AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0818060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0818060 MtrunA17_Chr5g0436971 97.674 129 3 0 1 129 1 129 6.14e-93 264
Msa0818060 MtrunA17_Chr3g0113291 77.344 128 29 0 1 128 24 151 5.46e-72 212
Msa0818060 MtrunA17_Chr7g0242231 69.027 113 35 0 1 113 1 113 5.14e-56 170
Msa0818060 MtrunA17_Chr2g0316921 56.589 129 56 0 1 129 1 129 1.91e-47 149
Msa0818060 MtrunA17_Chr8g0360291 60.952 105 41 0 1 105 1 105 5.10e-44 140
Msa0818060 MtrunA17_Chr4g0046851 57.143 105 45 0 1 105 1 105 1.99e-41 134
Msa0818060 MtrunA17_Chr8g0346501 50.505 99 49 0 12 110 8 106 1.60e-33 113
Msa0818060 MtrunA17_Chr3g0127211 52.128 94 45 0 12 105 8 101 2.00e-33 112
Msa0818060 MtrunA17_Chr1g0188931 46.809 94 50 0 12 105 8 101 1.16e-30 105
Msa0818060 MtrunA17_Chr2g0316891 48.837 86 44 0 44 129 42 127 3.78e-22 84.7
Msa0818060 MtrunA17_Chr1g0188951 51.852 54 26 0 48 101 1 54 2.24e-17 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0818060 AT2G40110.1 78.462 130 27 1 1 129 1 130 4.51e-72 211
Msa0818060 AT3G11230.1 72.093 129 36 0 1 129 1 129 1.56e-67 200
Msa0818060 AT3G11230.2 72.093 129 36 0 1 129 34 162 3.88e-67 200
Msa0818060 AT2G40110.2 79.612 103 21 0 1 103 1 103 4.65e-58 175
Msa0818060 AT3G11230.4 75.728 103 25 0 1 103 1 103 3.88e-54 165
Msa0818060 AT3G11230.3 76.471 102 24 0 1 102 34 135 5.74e-54 166
Msa0818060 AT3G08990.2 59.375 128 52 0 1 128 1 128 2.98e-53 164
Msa0818060 AT3G08990.1 59.375 128 52 0 1 128 1 128 2.98e-53 164
Msa0818060 AT3G08990.3 59.375 128 52 0 1 128 1 128 2.98e-53 164
Msa0818060 AT3G55890.4 62.016 129 41 1 1 129 1 121 3.83e-53 163
Msa0818060 AT3G55890.1 62.016 129 41 1 1 129 1 121 3.83e-53 163
Msa0818060 AT5G53940.1 58.140 129 54 0 1 129 1 129 4.93e-50 155
Msa0818060 AT3G55890.3 67.327 101 33 0 1 101 1 101 5.56e-47 147
Msa0818060 AT3G55890.2 67.327 101 33 0 1 101 1 101 5.56e-47 147
Msa0818060 AT2G40110.4 75.904 83 20 0 1 83 1 83 2.38e-43 137
Msa0818060 AT2G40110.3 75.904 83 20 0 1 83 1 83 2.38e-43 137
Msa0818060 AT4G27745.2 53.061 98 46 0 12 109 8 105 5.33e-35 117
Msa0818060 AT4G27745.3 53.061 98 46 0 12 109 8 105 5.33e-35 117
Msa0818060 AT4G27745.1 53.061 98 46 0 12 109 8 105 5.33e-35 117
Msa0818060 AT4G27745.4 53.061 98 46 0 12 109 8 105 5.33e-35 117
Msa0818060 AT4G27740.1 41.935 93 54 0 14 106 10 102 3.79e-24 89.7

Find 47 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTGATGTTCAATGAATT+TGG 0.084467 5_3:-53504742 Msa0818060:three_prime_UTR
GTCCTGATGGCAGCAATTAT+TGG 0.259271 5_3:-53504862 Msa0818060:CDS
TGTTACCTTTGGTTTGGTTT+TGG 0.273266 5_3:+53508074 None:intergenic
TCAATGAATTTGGATTTATA+AGG 0.316897 5_3:-53504732 Msa0818060:three_prime_UTR
TACAGTGTGAATGTTTCTAT+TGG 0.322176 5_3:-53505388 Msa0818060:intron
TAAGGACAAATTAGCAAAAT+CGG 0.348577 5_3:-53504714 Msa0818060:three_prime_UTR
TTGACCAGGTTCAAGGTGTC+TGG 0.365136 5_3:-53504884 Msa0818060:intron
GCCCCGAAAACCATTTGAAT+TGG 0.365740 5_3:-53504685 Msa0818060:three_prime_UTR
TCCTGATGGCAGCAATTATT+GGG 0.368015 5_3:-53504861 Msa0818060:CDS
TGTTTCTATTGGAGAATTAG+AGG 0.372709 5_3:-53505377 Msa0818060:CDS
TTGTTTGTTGTTCATCTTGA+AGG 0.413695 5_3:-53507881 Msa0818060:CDS
GTTGAATGTTACCTTTGGTT+TGG 0.431009 5_3:+53508068 None:intergenic
ATGAGAATCACCAATTCAAA+TGG 0.447332 5_3:+53504675 None:intergenic
ACCCAATAATTGCTGCCATC+AGG 0.450327 5_3:+53504860 None:intergenic
CAAGGATAACTTACACCTTA+CGG 0.472783 5_3:+53505667 None:intergenic
GAGGACAGAAATATGATGAC+TGG 0.475545 5_3:-53505358 Msa0818060:CDS
TTGTGAAGATGTTGTTTCAA+AGG 0.476254 5_3:-53507816 Msa0818060:intron
TTCAAGGTGTCTGGTCCTGA+TGG 0.507863 5_3:-53504875 Msa0818060:CDS
AGAAGAGTACGTAAGAAATG+TGG 0.515693 5_3:+53508099 None:intergenic
CAGGCTTTCCACAGCAGACA+TGG 0.524156 5_3:-53505705 Msa0818060:CDS
TTTCAACACCATGTGTTGCA+TGG 0.544712 5_3:+53504834 None:intergenic
GTCGGTTGTGGATCAATCCT+CGG 0.549786 5_3:-53505307 Msa0818060:CDS
TTGTTGTTCATCTTGAAGGA+AGG 0.554689 5_3:-53507877 Msa0818060:CDS
AAAAGCCAGAAGTACAAAGA+AGG 0.556508 5_3:-53505178 Msa0818060:CDS
AATTCAATTGTCAATGAGGA+CGG 0.563540 5_3:+53504786 None:intergenic
TTTCCACAGCAGACATGGGA+AGG 0.566067 5_3:-53505700 Msa0818060:CDS
ATTCAATTGTCAATGAGGAC+GGG 0.570367 5_3:+53504787 None:intergenic
AAGGAAAATCTGTTCTTGAA+CGG 0.572251 5_3:-53505159 Msa0818060:intron
GATCTTGTTCAGTTATTGCG+TGG 0.576508 5_3:-53507931 Msa0818060:intron
GTTGTGGATCAATCCTCGGT+TGG 0.576717 5_3:-53505303 Msa0818060:CDS
TCATTGAACATCAACAGAGA+GGG 0.597230 5_3:+53504748 None:intergenic
AGGCTTTCCACAGCAGACAT+GGG 0.597650 5_3:-53505704 Msa0818060:CDS
AAGCCTTCCCATGTCTGCTG+TGG 0.600078 5_3:+53505697 None:intergenic
TGGGTTAGCCATGCAACACA+TGG 0.601436 5_3:-53504842 Msa0818060:CDS
ACATCTTCACAAAGAGCAAG+AGG 0.603930 5_3:+53507827 None:intergenic
AGGACAGAAATATGATGACT+GGG 0.607783 5_3:-53505357 Msa0818060:CDS
CATTGAACATCAACAGAGAG+GGG 0.618572 5_3:+53504749 None:intergenic
CATCTTCACAAAGAGCAAGA+GGG 0.619095 5_3:+53507828 None:intergenic
ATCTTCACAAAGAGCAAGAG+GGG 0.623684 5_3:+53507829 None:intergenic
TCTCTCCAAAACCAAACCAA+AGG 0.628109 5_3:-53508079 Msa0818060:intron
ATACAATTCAATTGTCAATG+AGG 0.629874 5_3:+53504782 None:intergenic
GAAGGCTTATCTCTTCCGTA+AGG 0.633340 5_3:-53505682 Msa0818060:CDS
TTCATTGAACATCAACAGAG+AGG 0.647728 5_3:+53504747 None:intergenic
GTAGAACACGACAAGATGCG+TGG 0.648848 5_3:+53508158 None:intergenic
TAGAACACGACAAGATGCGT+GGG 0.660783 5_3:+53508159 None:intergenic
GTCTTACATATGTCCAACCG+AGG 0.682634 5_3:+53505290 None:intergenic
GATGACTGGGATGCATACTG+TGG 0.714746 5_3:-53505344 Msa0818060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTCATAAAAAAAATTAAAAT+TGG + chr5_3:53505009-53505028 None:intergenic 10.0%
!! TTAAAGTGAATTTATAAATT+AGG - chr5_3:53506072-53506091 Msa0818060:intron 10.0%
!! TAAAGTGAATTTATAAATTA+GGG - chr5_3:53506073-53506092 Msa0818060:intron 10.0%
!!! AATTTTCTTAGTTGAATTAT+GGG - chr5_3:53504864-53504883 Msa0818060:CDS 15.0%
!!! TTTAAGTTTTTGTTTATGTT+TGG - chr5_3:53505042-53505061 Msa0818060:intron 15.0%
!!! ATTTGTAATTTATTTTACTG+TGG - chr5_3:53505702-53505721 Msa0818060:CDS 15.0%
!!! TATTTGGTTTATAACAATTT+AGG - chr5_3:53505781-53505800 Msa0818060:intron 15.0%
!!! ATTTGGTTTATAACAATTTA+GGG - chr5_3:53505782-53505801 Msa0818060:intron 15.0%
!! AATAAGTTAAGATAAACAAT+CGG - chr5_3:53505978-53505997 Msa0818060:intron 15.0%
!! AAAGTGAATTTATAAATTAG+GGG - chr5_3:53506074-53506093 Msa0818060:intron 15.0%
!!! ACTTTTTCTTAATGTTTTAA+CGG - chr5_3:53506953-53506972 Msa0818060:intron 15.0%
!!! ATTGATAATAATTAGAACAA+GGG - chr5_3:53507745-53507764 Msa0818060:intron 15.0%
!!! GAATTTTCTTAGTTGAATTA+TGG - chr5_3:53504863-53504882 Msa0818060:CDS 20.0%
!! ATGGTGAATTTGATAAAATT+AGG - chr5_3:53505168-53505187 Msa0818060:CDS 20.0%
!! ATGGTGAATTTGATAAAATT+AGG - chr5_3:53505168-53505187 Msa0818060:CDS 20.0%
!!! TGCTATTAACTAAAACTTTT+TGG - chr5_3:53506452-53506471 Msa0818060:intron 20.0%
!! TATGATATTTCCATTTAAAC+CGG + chr5_3:53506886-53506905 None:intergenic 20.0%
!! ATATGTATATATATTCTGAC+TGG - chr5_3:53507020-53507039 Msa0818060:intron 20.0%
!!! ACAGTTATGTTTTTTATTCA+TGG - chr5_3:53507269-53507288 Msa0818060:intron 20.0%
!!! CATTGATAATAATTAGAACA+AGG - chr5_3:53507744-53507763 Msa0818060:intron 20.0%
!! TCAATGAATTTGGATTTATA+AGG - chr5_3:53508040-53508059 Msa0818060:intron 20.0%
! GTCAAACATAAATCACAAAA+GGG + chr5_3:53504764-53504783 None:intergenic 25.0%
! AGTCAAACATAAATCACAAA+AGG + chr5_3:53504765-53504784 None:intergenic 25.0%
! AGACAGTTAAAGAACAAAAA+TGG + chr5_3:53504817-53504836 None:intergenic 25.0%
! TTGAAACTTCAACAAAACTA+CGG + chr5_3:53505101-53505120 None:intergenic 25.0%
! ATGGTGAATGTGATAAAATT+AGG - chr5_3:53505267-53505286 Msa0818060:intron 25.0%
!!! TGTAATTTATTTTACTGTGG+TGG - chr5_3:53505705-53505724 Msa0818060:CDS 25.0%
!!! GTAATTTATTTTACTGTGGT+GGG - chr5_3:53505706-53505725 Msa0818060:intron 25.0%
!! ACAGCTTAAATTTTGTGTTA+AGG - chr5_3:53505909-53505928 Msa0818060:intron 25.0%
!!! ATGCTTAAGCACTTTTATTT+CGG + chr5_3:53506109-53506128 None:intergenic 25.0%
! AGATGAAAGACAATAACATA+AGG + chr5_3:53506323-53506342 None:intergenic 25.0%
! TAAGCATTTATAAGTTTCCA+AGG + chr5_3:53506382-53506401 None:intergenic 25.0%
!! AAACCATTCTATTCTGATTT+TGG - chr5_3:53506798-53506817 Msa0818060:intron 25.0%
!!! TATAAACGACCAAGTTTTTT+AGG - chr5_3:53506859-53506878 Msa0818060:intron 25.0%
!!! ATAAACGACCAAGTTTTTTA+GGG - chr5_3:53506860-53506879 Msa0818060:intron 25.0%
!!! GTTTTAACGGTTTTTTTAGT+TGG - chr5_3:53506966-53506985 Msa0818060:intron 25.0%
!!! ATGTTTTTTATTCATGGCTT+TGG - chr5_3:53507275-53507294 Msa0818060:intron 25.0%
!!! TGTTTTTTATTCATGGCTTT+GGG - chr5_3:53507276-53507295 Msa0818060:intron 25.0%
! ACTAACTGCAAAATATAATG+CGG + chr5_3:53507326-53507345 None:intergenic 25.0%
! ATACAATTCAATTGTCAATG+AGG + chr5_3:53507993-53508012 None:intergenic 25.0%
! TAAGGACAAATTAGCAAAAT+CGG - chr5_3:53508058-53508077 Msa0818060:intron 25.0%
AAAACGTTGAATGTTACCTT+TGG + chr5_3:53504712-53504731 None:intergenic 30.0%
!! TTGTTTGTTGTTCATCTTGA+AGG - chr5_3:53504891-53504910 Msa0818060:intron 30.0%
!! TTGTGAAGATGTTGTTTCAA+AGG - chr5_3:53504956-53504975 Msa0818060:intron 30.0%
TTGTTGAAGTTTCAACGATT+AGG - chr5_3:53505106-53505125 Msa0818060:intron 30.0%
TCGAAACTTCAACAAAACTA+TGG + chr5_3:53505200-53505219 None:intergenic 30.0%
ATAATCACCGTTTCAGTTTA+TGG - chr5_3:53505734-53505753 Msa0818060:intron 30.0%
ACTATCACCATAAACTGAAA+CGG + chr5_3:53505744-53505763 None:intergenic 30.0%
TTTCAGTTTATGGTGATAGT+TGG - chr5_3:53505744-53505763 Msa0818060:intron 30.0%
TTTGTGTTAAGGTACACAAA+TGG - chr5_3:53505920-53505939 Msa0818060:intron 30.0%
ATGGTCGGAAATTAAAGTTA+TGG - chr5_3:53505939-53505958 Msa0818060:intron 30.0%
GAATTTATAAATTAGGGGTG+AGG - chr5_3:53506079-53506098 Msa0818060:intron 30.0%
!! GAAATAAAAGTGCTTAAGCA+TGG - chr5_3:53506108-53506127 Msa0818060:intron 30.0%
TTTGTGTACCAATACACAAA+TGG + chr5_3:53506253-53506272 None:intergenic 30.0%
AGACAATAACATAAGGTTGA+AGG + chr5_3:53506316-53506335 None:intergenic 30.0%
TGTACTTCAGAATTAGACAA+TGG + chr5_3:53506629-53506648 None:intergenic 30.0%
GTGAATTATGTAGATTGTAG+AGG + chr5_3:53506742-53506761 None:intergenic 30.0%
AATCTACATAATTCACTGAG+TGG - chr5_3:53506746-53506765 Msa0818060:intron 30.0%
TGGTTTCATATATTTCACAG+AGG - chr5_3:53506766-53506785 Msa0818060:intron 30.0%
GAACCAAAATCAGAATAGAA+TGG + chr5_3:53506804-53506823 None:intergenic 30.0%
TGGAATCGACATTTCTTTAT+TGG - chr5_3:53506986-53507005 Msa0818060:intron 30.0%
GATTTCGGTTTCATTGAAAA+TGG + chr5_3:53507179-53507198 None:intergenic 30.0%
ACCTTTGATTACAAACTACA+AGG + chr5_3:53507239-53507258 None:intergenic 30.0%
! GTTTGTAATCAAAGGTGTAA+AGG - chr5_3:53507243-53507262 Msa0818060:intron 30.0%
! TACAGTGTGAATGTTTCTAT+TGG - chr5_3:53507384-53507403 Msa0818060:intron 30.0%
! TGTTTCTATTGGAGAATTAG+AGG - chr5_3:53507395-53507414 Msa0818060:intron 30.0%
CATTAAGTTAAGTTACCCTT+TGG - chr5_3:53507546-53507565 Msa0818060:intron 30.0%
! ATTTTCCTTCTTTGTACTTC+TGG + chr5_3:53507602-53507621 None:intergenic 30.0%
AAGGAAAATCTGTTCTTGAA+CGG - chr5_3:53507613-53507632 Msa0818060:intron 30.0%
AATTCAATTGTCAATGAGGA+CGG + chr5_3:53507989-53508008 None:intergenic 30.0%
CTGTTGATGTTCAATGAATT+TGG - chr5_3:53508030-53508049 Msa0818060:intron 30.0%
! TCACCAATTCAAATGGTTTT+CGG + chr5_3:53508093-53508112 None:intergenic 30.0%
ATGAGAATCACCAATTCAAA+TGG + chr5_3:53508100-53508119 None:intergenic 30.0%
! AGAAGAGTACGTAAGAAATG+TGG + chr5_3:53504676-53504695 None:intergenic 35.0%
!!! TGTTACCTTTGGTTTGGTTT+TGG + chr5_3:53504701-53504720 None:intergenic 35.0%
GTTGAATGTTACCTTTGGTT+TGG + chr5_3:53504707-53504726 None:intergenic 35.0%
! TTGTTGTTCATCTTGAAGGA+AGG - chr5_3:53504895-53504914 Msa0818060:intron 35.0%
TTGTTGAAGTTTCGACGATT+AGG - chr5_3:53505205-53505224 Msa0818060:intron 35.0%
TTGTTGAAGTTTCGACGATT+AGG - chr5_3:53505205-53505224 Msa0818060:intron 35.0%
TTGTTGAAGTTTCGACGATT+AGG - chr5_3:53505205-53505224 Msa0818060:intron 35.0%
TTGTTGAAGTTTCGACGATT+AGG - chr5_3:53505205-53505224 Msa0818060:intron 35.0%
TTGTTGAAGTTTCGACGATT+AGG - chr5_3:53505205-53505224 Msa0818060:intron 35.0%
GGATAACAGCTTTGCTTATT+TGG - chr5_3:53505765-53505784 Msa0818060:intron 35.0%
! CACGCTTGATAATCGATTTA+AGG - chr5_3:53505871-53505890 Msa0818060:intron 35.0%
! TCGATTTAAGGTTGCGTTTA+TGG - chr5_3:53505883-53505902 Msa0818060:intron 35.0%
TGTTAAGGTACACAAATGGT+CGG - chr5_3:53505924-53505943 Msa0818060:intron 35.0%
GTCGGAAATTAAAGTTATGG+TGG - chr5_3:53505942-53505961 Msa0818060:intron 35.0%
! AAAGTTATGGTGGAACTAGA+AGG - chr5_3:53505952-53505971 Msa0818060:intron 35.0%
AGATAAACAATCGGAGTGAT+CGG - chr5_3:53505987-53506006 Msa0818060:intron 35.0%
! ACTTGACTGTATTACTGGTT+GGG - chr5_3:53506024-53506043 Msa0818060:intron 35.0%
TTTAATCGTCATGCTTCAAC+TGG + chr5_3:53506057-53506076 None:intergenic 35.0%
CAATGGTGCAAGATACAAAA+TGG - chr5_3:53506139-53506158 Msa0818060:intron 35.0%
CAACTATTCTCAGGATGTAT+CGG + chr5_3:53506177-53506196 None:intergenic 35.0%
GTCATCAACCATTTGTGTAT+TGG - chr5_3:53506242-53506261 Msa0818060:intron 35.0%
TGAAGGTGGTCATTAAATCA+AGG + chr5_3:53506299-53506318 None:intergenic 35.0%
CAATAACATAAGGTTGAAGG+TGG + chr5_3:53506313-53506332 None:intergenic 35.0%
!! GTTTTGGCATTAGCACAATT+TGG + chr5_3:53506349-53506368 None:intergenic 35.0%
TATGAGTGTATCTGACAAAG+TGG - chr5_3:53506493-53506512 Msa0818060:intron 35.0%
AGAAGTTACTTCTGTGCAAA+AGG - chr5_3:53506564-53506583 Msa0818060:intron 35.0%
TTACTTCTGTGCAAAAGGAA+AGG - chr5_3:53506569-53506588 Msa0818060:intron 35.0%
!! GGAAGTAATCCTACTTTTGA+AGG - chr5_3:53506593-53506612 Msa0818060:intron 35.0%
GCAAATAGTCCTTCAAAAGT+AGG + chr5_3:53506605-53506624 None:intergenic 35.0%
!!! TTTTTTAGGGCCGGTTTAAA+TGG - chr5_3:53506873-53506892 Msa0818060:intron 35.0%
!! TTACTTGTGCTGTTTCATTC+AGG - chr5_3:53507048-53507067 Msa0818060:intron 35.0%
CAAGGATAACTTACACCTTA+CGG + chr5_3:53507108-53507127 None:intergenic 35.0%
GTGTAAGTTATCCTTGACAT+TGG - chr5_3:53507112-53507131 Msa0818060:intron 35.0%
ATGGTGAAACCAAAGTTATC+AGG + chr5_3:53507160-53507179 None:intergenic 35.0%
ATGCAGGACAAAAGGTTAAA+GGG + chr5_3:53507207-53507226 None:intergenic 35.0%
! CTTTTGTCCTGCATCATTTT+GGG - chr5_3:53507213-53507232 Msa0818060:intron 35.0%
! GCCTTGTAGTTTGTAATCAA+AGG - chr5_3:53507235-53507254 Msa0818060:intron 35.0%
AGGACAGAAATATGATGACT+GGG - chr5_3:53507415-53507434 Msa0818060:intron 35.0%
ACTTAATGCAGCATAGAAAC+AGG + chr5_3:53507534-53507553 None:intergenic 35.0%
! AAAAGCCAGAAGTACAAAGA+AGG - chr5_3:53507594-53507613 Msa0818060:intron 35.0%
AGCGATATATAAGTATGTCG+TGG - chr5_3:53507846-53507865 Msa0818060:CDS 35.0%
ATTCAATTGTCAATGAGGAC+GGG + chr5_3:53507988-53508007 None:intergenic 35.0%
TCATTGAACATCAACAGAGA+GGG + chr5_3:53508027-53508046 None:intergenic 35.0%
TTCATTGAACATCAACAGAG+AGG + chr5_3:53508028-53508047 None:intergenic 35.0%
! ACCAATTCAAATGGTTTTCG+GGG + chr5_3:53508091-53508110 None:intergenic 35.0%
! CACCAATTCAAATGGTTTTC+GGG + chr5_3:53508092-53508111 None:intergenic 35.0%
TCTCTCCAAAACCAAACCAA+AGG - chr5_3:53504693-53504712 Msa0818060:three_prime_UTR 40.0%
GATCTTGTTCAGTTATTGCG+TGG - chr5_3:53504841-53504860 Msa0818060:CDS 40.0%
ATCTTCACAAAGAGCAAGAG+GGG + chr5_3:53504946-53504965 None:intergenic 40.0%
CATCTTCACAAAGAGCAAGA+GGG + chr5_3:53504947-53504966 None:intergenic 40.0%
ACATCTTCACAAAGAGCAAG+AGG + chr5_3:53504948-53504967 None:intergenic 40.0%
CGATGATGCACTATGATTCA+TGG - chr5_3:53505149-53505168 Msa0818060:intron 40.0%
CGATGACGTACTATGATTCA+TGG - chr5_3:53505446-53505465 Msa0818060:intron 40.0%
AATCAGATTCGCAGTGACTT+CGG + chr5_3:53505668-53505687 None:intergenic 40.0%
CACTTGACTGTATTACTGGT+TGG - chr5_3:53506023-53506042 Msa0818060:intron 40.0%
AGTGCTTAAGCATGGTATTG+TGG - chr5_3:53506116-53506135 Msa0818060:intron 40.0%
TAAGCATGGTATTGTGGCAA+TGG - chr5_3:53506122-53506141 Msa0818060:intron 40.0%
!! CCAAGGAAGCATACATGTTT+TGG + chr5_3:53506365-53506384 None:intergenic 40.0%
CCAAAACATGTATGCTTCCT+TGG - chr5_3:53506362-53506381 Msa0818060:intron 40.0%
TAAACCGGCCCTAAAAAACT+TGG + chr5_3:53506871-53506890 None:intergenic 40.0%
!! AGTGAAAGGTACCAATGTCA+AGG + chr5_3:53507126-53507145 None:intergenic 40.0%
GTGTTCTGTCCTGATAACTT+TGG - chr5_3:53507148-53507167 Msa0818060:intron 40.0%
GGTTAAAGGGTGGAAGATTT+CGG + chr5_3:53507194-53507213 None:intergenic 40.0%
GATGCAGGACAAAAGGTTAA+AGG + chr5_3:53507208-53507227 None:intergenic 40.0%
CCAAAATGATGCAGGACAAA+AGG + chr5_3:53507215-53507234 None:intergenic 40.0%
! CCTTTTGTCCTGCATCATTT+TGG - chr5_3:53507212-53507231 Msa0818060:intron 40.0%
TATAATGCGGCTAGAGCTAA+TGG + chr5_3:53507313-53507332 None:intergenic 40.0%
GAGGACAGAAATATGATGAC+TGG - chr5_3:53507414-53507433 Msa0818060:intron 40.0%
TAATGCAGCATAGAAACAGG+AGG + chr5_3:53507531-53507550 None:intergenic 40.0%
! GTTACCCTTTGGTTTCTTTC+AGG - chr5_3:53507557-53507576 Msa0818060:intron 40.0%
GTCTCCTGAAAGAAACCAAA+GGG + chr5_3:53507564-53507583 None:intergenic 40.0%
AGTCTCCTGAAAGAAACCAA+AGG + chr5_3:53507565-53507584 None:intergenic 40.0%
TAATTACTCTGTCAGTGTCG+TGG - chr5_3:53507781-53507800 Msa0818060:intron 40.0%
TGCCAAACATCAACACATGT+CGG - chr5_3:53507807-53507826 Msa0818060:intron 40.0%
TATATCGCTCAAAACCCATG+TGG + chr5_3:53507835-53507854 None:intergenic 40.0%
! GAGTTTTTGCTCTTTTGACC+AGG - chr5_3:53507874-53507893 Msa0818060:CDS 40.0%
TCCTGATGGCAGCAATTATT+GGG - chr5_3:53507911-53507930 Msa0818060:exon 40.0%
TTTCAACACCATGTGTTGCA+TGG + chr5_3:53507941-53507960 None:intergenic 40.0%
CATTGAACATCAACAGAGAG+GGG + chr5_3:53508026-53508045 None:intergenic 40.0%
CGATGACGCACTATGATTCA+TGG - chr5_3:53505248-53505267 Msa0818060:intron 45.0%
CGATGACGCACTATGATTCA+TGG - chr5_3:53505248-53505267 Msa0818060:intron 45.0%
CATCCTGAGAATAGTTGACG+CGG - chr5_3:53506180-53506199 Msa0818060:intron 45.0%
CTTCTGTGCAAAAGGAAAGG+TGG - chr5_3:53506572-53506591 Msa0818060:intron 45.0%
!!! ACGACCAAGTTTTTTAGGGC+CGG - chr5_3:53506864-53506883 Msa0818060:intron 45.0%
GAAGGCTTATCTCTTCCGTA+AGG - chr5_3:53507090-53507109 Msa0818060:intron 45.0%
AGGACAGAACACGTAGTGAA+AGG + chr5_3:53507140-53507159 None:intergenic 45.0%
CAGGACAAAAGGTTAAAGGG+TGG + chr5_3:53507204-53507223 None:intergenic 45.0%
TACAAGGCCCAAAATGATGC+AGG + chr5_3:53507223-53507242 None:intergenic 45.0%
TAGAGCTAATGGAGATTCGG+AGG + chr5_3:53507302-53507321 None:intergenic 45.0%
GGCTAGAGCTAATGGAGATT+CGG + chr5_3:53507305-53507324 None:intergenic 45.0%
! GTGGCTGACATTTTCTGTGT+CGG - chr5_3:53507447-53507466 Msa0818060:intron 45.0%
!!! GACATTTTCTGTGTCGGTTG+TGG - chr5_3:53507453-53507472 Msa0818060:intron 45.0%
GTCTTACATATGTCCAACCG+AGG + chr5_3:53507485-53507504 None:intergenic 45.0%
! CACCGACATGTGTTGATGTT+TGG + chr5_3:53507812-53507831 None:intergenic 45.0%
! TGCTCTTTTGACCAGGTTCA+AGG - chr5_3:53507881-53507900 Msa0818060:CDS 45.0%
GTCCTGATGGCAGCAATTAT+TGG - chr5_3:53507910-53507929 Msa0818060:exon 45.0%
ACCCAATAATTGCTGCCATC+AGG + chr5_3:53507915-53507934 None:intergenic 45.0%
GCCCCGAAAACCATTTGAAT+TGG - chr5_3:53508087-53508106 Msa0818060:five_prime_UTR 45.0%
!! TCATAAAAAAAATTAAAATT+GGG + chr5_3:53505008-53505027 None:intergenic 5.0%
CGATGACGCGCTATGATTCA+TGG - chr5_3:53505545-53505564 Msa0818060:intron 50.0%
! GGGGCACTTGACTGTATTAC+TGG - chr5_3:53506019-53506038 Msa0818060:intron 50.0%
CTACCGCGTCAACTATTCTC+AGG + chr5_3:53506186-53506205 None:intergenic 50.0%
GAGAATAGTTGACGCGGTAG+TGG - chr5_3:53506186-53506205 Msa0818060:intron 50.0%
!! TGGTGCTGTTTCGGCAGTTT+CGG + chr5_3:53506214-53506233 None:intergenic 50.0%
AAACTGCCGAAACAGCACCA+TGG - chr5_3:53506214-53506233 Msa0818060:intron 50.0%
AGGCTTTCCACAGCAGACAT+GGG - chr5_3:53507068-53507087 Msa0818060:intron 50.0%
TTTCCACAGCAGACATGGGA+AGG - chr5_3:53507072-53507091 Msa0818060:intron 50.0%
GATGACTGGGATGCATACTG+TGG - chr5_3:53507428-53507447 Msa0818060:intron 50.0%
GTCGGTTGTGGATCAATCCT+CGG - chr5_3:53507465-53507484 Msa0818060:intron 50.0%
GTTGTGGATCAATCCTCGGT+TGG - chr5_3:53507469-53507488 Msa0818060:intron 50.0%
!! AACACATGTCGGTGCCACAT+GGG - chr5_3:53507818-53507837 Msa0818060:CDS 50.0%
! TTGACCAGGTTCAAGGTGTC+TGG - chr5_3:53507888-53507907 Msa0818060:CDS 50.0%
! TTCAAGGTGTCTGGTCCTGA+TGG - chr5_3:53507897-53507916 Msa0818060:exon 50.0%
!! TGGGTTAGCCATGCAACACA+TGG - chr5_3:53507930-53507949 Msa0818060:intron 50.0%
AATCGGAGTGATCGGCCTTG+AGG - chr5_3:53505995-53506014 Msa0818060:intron 55.0%
!! ATGGTTGATGACCGCTGCCA+TGG + chr5_3:53506234-53506253 None:intergenic 55.0%
CAGGCTTTCCACAGCAGACA+TGG - chr5_3:53507067-53507086 Msa0818060:intron 55.0%
AAGCCTTCCCATGTCTGCTG+TGG + chr5_3:53507078-53507097 None:intergenic 55.0%
!! CAACACATGTCGGTGCCACA+TGG - chr5_3:53507817-53507836 Msa0818060:CDS 55.0%
AGGACCAGACACCTTGAACC+TGG + chr5_3:53507895-53507914 None:intergenic 55.0%
!! CCGCTGCCATGGTGCTGTTT+CGG + chr5_3:53506223-53506242 None:intergenic 60.0%
CCGAAACAGCACCATGGCAG+CGG - chr5_3:53506220-53506239 Msa0818060:intron 60.0%
CGGAGTGATCGGCCTTGAGG+CGG - chr5_3:53505998-53506017 Msa0818060:intron 65.0%
GGAGTGATCGGCCTTGAGGC+GGG - chr5_3:53505999-53506018 Msa0818060:intron 65.0%
GAGTGATCGGCCTTGAGGCG+GGG - chr5_3:53506000-53506019 Msa0818060:intron 65.0%
CAGTCAAGTGCCCCGCCTCA+AGG + chr5_3:53506013-53506032 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 53504615 53508179 53504615 ID=Msa0818060;Name=Msa0818060
chr5_3 mRNA 53504615 53508179 53504615 ID=Msa0818060-mRNA-1;Parent=Msa0818060;Name=Msa0818060-mRNA-1;_AED=0.14;_eAED=0.14;_QI=129|1|1|1|0.8|0.66|6|199|129
chr5_3 exon 53504615 53504898 53504615 ID=Msa0818060-mRNA-1:exon:16160;Parent=Msa0818060-mRNA-1
chr5_3 exon 53505160 53505215 53505160 ID=Msa0818060-mRNA-1:exon:16159;Parent=Msa0818060-mRNA-1
chr5_3 exon 53505297 53505405 53505297 ID=Msa0818060-mRNA-1:exon:16158;Parent=Msa0818060-mRNA-1
chr5_3 exon 53505681 53505724 53505681 ID=Msa0818060-mRNA-1:exon:16157;Parent=Msa0818060-mRNA-1
chr5_3 exon 53507817 53507941 53507817 ID=Msa0818060-mRNA-1:exon:16156;Parent=Msa0818060-mRNA-1
chr5_3 exon 53508080 53508179 53508080 ID=Msa0818060-mRNA-1:exon:16155;Parent=Msa0818060-mRNA-1
chr5_3 five_prime_UTR 53508080 53508179 53508080 ID=Msa0818060-mRNA-1:five_prime_utr;Parent=Msa0818060-mRNA-1
chr5_3 five_prime_UTR 53507913 53507941 53507913 ID=Msa0818060-mRNA-1:five_prime_utr;Parent=Msa0818060-mRNA-1
chr5_3 CDS 53507817 53507912 53507817 ID=Msa0818060-mRNA-1:cds;Parent=Msa0818060-mRNA-1
chr5_3 CDS 53505681 53505724 53505681 ID=Msa0818060-mRNA-1:cds;Parent=Msa0818060-mRNA-1
chr5_3 CDS 53505297 53505405 53505297 ID=Msa0818060-mRNA-1:cds;Parent=Msa0818060-mRNA-1
chr5_3 CDS 53505160 53505215 53505160 ID=Msa0818060-mRNA-1:cds;Parent=Msa0818060-mRNA-1
chr5_3 CDS 53504814 53504898 53504814 ID=Msa0818060-mRNA-1:cds;Parent=Msa0818060-mRNA-1
chr5_3 three_prime_UTR 53504615 53504813 53504615 ID=Msa0818060-mRNA-1:three_prime_utr;Parent=Msa0818060-mRNA-1
Gene Sequence

>Msa0818060

ATGGGAAGATTGTTTGTTGTTCATCTTGAAGGAAGGATCTATAGCTGTAAACACTGTAGAACCCCTCTTGCTCTTTGTGAAGATGTTGTTTCAAAGGCTTTCCACAGCAGACATGGGAAGGCTTATCTCTTCCGTAAGGTTGTGAATGTTTCTATTGGAGAATTAGAGGACAGAAATATGATGACTGGGATGCATACTGTGGCTGACATTTTCTGTGTCGGTTGTGGATCAATCCTCGGTTGGACATATGAGACTGCTCATGAAAAAAGCCAGAAGTACAAAGAAGGAAAATCTGTTCTTGAACGGTTCAAGGTGTCTGGTCCTGATGGCAGCAATTATTGGGTTAGCCATGCAACACATGGTGTTGAAAGTGATGCAGATGATGCTTAA

Protein sequence

>Msa0818060

MGRLFVVHLEGRIYSCKHCRTPLALCEDVVSKAFHSRHGKAYLFRKVVNVSIGELEDRNMMTGMHTVADIFCVGCGSILGWTYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHATHGVESDADDA*