Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823560 | XP_003617548.1 | 99.091 | 110 | 1 | 0 | 34 | 143 | 1 | 110 | 2.15e-74 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823560 | sp|O82569|SUI1_SPUBR | 75.229 | 109 | 26 | 1 | 36 | 143 | 5 | 113 | 9.61e-57 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823560 | G7K3H5 | 99.091 | 110 | 1 | 0 | 34 | 143 | 1 | 110 | 1.03e-74 | 227 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050730 | Msa0823560 | 0.803575 | 3.264527e-49 | -8.615850e-47 |
| Msa0823560 | Msa0862640 | 0.991142 | 4.187892e-186 | -8.615850e-47 |
| Msa0823560 | Msa1244830 | 0.814779 | 1.294606e-51 | -8.615850e-47 |
| Msa0823560 | Msa1436040 | 0.801510 | 8.703759e-49 | -8.615850e-47 |
| Msa0253370 | Msa0823560 | 0.800227 | 1.590855e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823560 | MtrunA17_Chr5g0444201 | 99.091 | 110 | 1 | 0 | 34 | 143 | 1 | 110 | 1.98e-78 | 227 |
| Msa0823560 | MtrunA17_Chr3g0098971 | 84.404 | 109 | 17 | 0 | 35 | 143 | 4 | 112 | 3.34e-65 | 194 |
| Msa0823560 | MtrunA17_Chr4g0024171 | 71.560 | 109 | 30 | 1 | 36 | 143 | 5 | 113 | 2.11e-55 | 169 |
| Msa0823560 | MtrunA17_Chr2g0319561 | 72.072 | 111 | 29 | 1 | 35 | 143 | 4 | 114 | 7.26e-55 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823560 | AT5G54940.1 | 81.651 | 109 | 20 | 0 | 35 | 143 | 4 | 112 | 4.72e-64 | 191 |
| Msa0823560 | AT5G54940.3 | 81.651 | 109 | 20 | 0 | 35 | 143 | 4 | 112 | 4.72e-64 | 191 |
| Msa0823560 | AT5G54940.2 | 81.651 | 109 | 20 | 0 | 35 | 143 | 4 | 112 | 4.72e-64 | 191 |
| Msa0823560 | AT1G54290.1 | 72.727 | 110 | 29 | 1 | 35 | 143 | 4 | 113 | 1.45e-57 | 175 |
| Msa0823560 | AT4G27130.1 | 73.636 | 110 | 28 | 1 | 35 | 143 | 4 | 113 | 1.99e-57 | 174 |
| Msa0823560 | AT5G54760.2 | 73.636 | 110 | 28 | 1 | 35 | 143 | 4 | 113 | 3.12e-57 | 174 |
| Msa0823560 | AT5G54760.4 | 73.636 | 110 | 28 | 1 | 35 | 143 | 4 | 113 | 3.12e-57 | 174 |
| Msa0823560 | AT5G54760.3 | 73.636 | 110 | 28 | 1 | 35 | 143 | 4 | 113 | 3.12e-57 | 174 |
| Msa0823560 | AT5G54760.1 | 73.636 | 110 | 28 | 1 | 35 | 143 | 4 | 113 | 3.12e-57 | 174 |
Find 29 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTTTCTTGAGATCTTTA+AGG | 0.098306 | 5_3:+62239587 | None:intergenic |
| CAAAAGAGTATGTGCATATT+AGG | 0.278072 | 5_3:-62239684 | Msa0823560:CDS |
| TCAGTCCTTGCACTGTTGTT+AGG | 0.278405 | 5_3:+62239635 | None:intergenic |
| TAGAAGAGAGTTGAAGAGAT+TGG | 0.333969 | 5_3:+62240800 | None:intergenic |
| AAGGACAACATCAAGATTCA+TGG | 0.385779 | 5_3:-62239451 | Msa0823560:CDS |
| AGAAGAGAGTTGAAGAGATT+GGG | 0.422313 | 5_3:+62240801 | None:intergenic |
| TCATGCTGGTCTTGCTAGAA+AGG | 0.426864 | 5_3:-62239470 | Msa0823560:CDS |
| AGTTGAAGAGATTGGGAATG+TGG | 0.436578 | 5_3:+62240808 | None:intergenic |
| TATCTCTATCTGCAGACTAC+AGG | 0.445137 | 5_3:-62240759 | Msa0823560:intron |
| TGCGTTGATCACCTTGGAGT+TGG | 0.445951 | 5_3:+62239515 | None:intergenic |
| GATTCTTTAGCCTCAGCAAA+TGG | 0.452308 | 5_3:+62239721 | None:intergenic |
| TCTCACTTCCTCATTCATGC+TGG | 0.461083 | 5_3:-62239484 | Msa0823560:CDS |
| GTTGTGAATTGCAAGGATCT+TGG | 0.473894 | 5_3:-62239547 | Msa0823560:CDS |
| GCAAATGGATCAAATGTGCT+TGG | 0.480564 | 5_3:+62239736 | None:intergenic |
| AGAGATTGGGAATGTGGAGG+TGG | 0.498637 | 5_3:+62240814 | None:intergenic |
| CATTCTTGCGTTGATCACCT+TGG | 0.510216 | 5_3:+62239509 | None:intergenic |
| CAAATGGATCAAATGTGCTT+GGG | 0.511747 | 5_3:+62239737 | None:intergenic |
| CACATTTGATCCATTTGCTG+AGG | 0.553489 | 5_3:-62239731 | Msa0823560:CDS |
| AACAGTGCAAGGACTGAAGA+AGG | 0.557278 | 5_3:-62239629 | Msa0823560:CDS |
| ATTAGGATACAACAAAGGAA+TGG | 0.567289 | 5_3:-62239667 | Msa0823560:CDS |
| GAGATTGGGAATGTGGAGGT+GGG | 0.587196 | 5_3:+62240815 | None:intergenic |
| TAGCAAGACCAGCATGAATG+AGG | 0.588886 | 5_3:+62239476 | None:intergenic |
| AATCACAAAGAAAGTGTACA+TGG | 0.596673 | 5_3:-62239773 | Msa0823560:CDS |
| GGCAAGATTATCCAACTCCA+AGG | 0.618688 | 5_3:-62239526 | Msa0823560:CDS |
| AAGAGCCTAACAACAGTGCA+AGG | 0.631107 | 5_3:-62239640 | Msa0823560:CDS |
| GCTAAAGAATCAGATGCACC+AGG | 0.655042 | 5_3:-62239709 | Msa0823560:CDS |
| TGGAAATGTTGTGAATTGCA+AGG | 0.663364 | 5_3:-62239554 | Msa0823560:CDS |
| TGAAGAGATTGGGAATGTGG+AGG | 0.681590 | 5_3:+62240811 | None:intergenic |
| TGCATATTAGGATACAACAA+AGG | 0.686189 | 5_3:-62239672 | Msa0823560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTATTTTAAAACTAATT+TGG | + | chr5_3:62240222-62240241 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTAAAATAAAACT+AGG | - | chr5_3:62240223-62240242 | Msa0823560:intron | 10.0% |
| !! | TGATATATATAATTCAAAAT+TGG | + | chr5_3:62240312-62240331 | None:intergenic | 10.0% |
| !!! | GTTTTATTTTAAAACTAATT+TGG | + | chr5_3:62240222-62240241 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTAAAATAAAACT+AGG | - | chr5_3:62240223-62240242 | Msa0823560:intron | 10.0% |
| !! | TGATATATATAATTCAAAAT+TGG | + | chr5_3:62240312-62240331 | None:intergenic | 10.0% |
| !! | ATATATATCATATGAATGAA+TGG | - | chr5_3:62240322-62240341 | Msa0823560:intron | 15.0% |
| !!! | AAACATAATCTTTAAAACTA+AGG | - | chr5_3:62240363-62240382 | Msa0823560:intron | 15.0% |
| !! | ATATATATCATATGAATGAA+TGG | - | chr5_3:62240322-62240341 | Msa0823560:intron | 15.0% |
| !!! | AAACATAATCTTTAAAACTA+AGG | - | chr5_3:62240363-62240382 | Msa0823560:intron | 15.0% |
| !!! | AATATACTCCAAGTTTTATA+TGG | - | chr5_3:62239695-62239714 | Msa0823560:CDS | 20.0% |
| !! | TATATTCACCATATAAAACT+TGG | + | chr5_3:62239706-62239725 | None:intergenic | 20.0% |
| !! | AGAAAAAAAGTTATGAAGAA+GGG | + | chr5_3:62239884-62239903 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAGTTATGAAGA+AGG | + | chr5_3:62239885-62239904 | None:intergenic | 20.0% |
| !! | ATCTAGGTTATTAGAATTAA+TGG | + | chr5_3:62240114-62240133 | None:intergenic | 20.0% |
| !!! | TTAATCTGATTTTAATATCC+TGG | - | chr5_3:62240403-62240422 | Msa0823560:intron | 20.0% |
| !!! | AATATACTCCAAGTTTTATA+TGG | - | chr5_3:62239695-62239714 | Msa0823560:CDS | 20.0% |
| !! | TATATTCACCATATAAAACT+TGG | + | chr5_3:62239706-62239725 | None:intergenic | 20.0% |
| !! | AGAAAAAAAGTTATGAAGAA+GGG | + | chr5_3:62239884-62239903 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAGTTATGAAGA+AGG | + | chr5_3:62239885-62239904 | None:intergenic | 20.0% |
| !! | ATCTAGGTTATTAGAATTAA+TGG | + | chr5_3:62240114-62240133 | None:intergenic | 20.0% |
| !!! | TTAATCTGATTTTAATATCC+TGG | - | chr5_3:62240403-62240422 | Msa0823560:intron | 20.0% |
| ! | AATATACTCCAAGTTTGATA+TGG | - | chr5_3:62239604-62239623 | Msa0823560:CDS | 25.0% |
| ! | ATATTTACAATTGTTCCACA+TGG | + | chr5_3:62239830-62239849 | None:intergenic | 25.0% |
| ! | TAAAACTAGGAATATATGAG+TGG | - | chr5_3:62240236-62240255 | Msa0823560:intron | 25.0% |
| ! | TATTCACTAATTTCAAACCT+CGG | + | chr5_3:62240281-62240300 | None:intergenic | 25.0% |
| ! | ATATCATATGAATGAATGGT+TGG | - | chr5_3:62240326-62240345 | Msa0823560:intron | 25.0% |
| ! | TCAGATTAAAACCAAATCAA+AGG | + | chr5_3:62240392-62240411 | None:intergenic | 25.0% |
| ! | ACAAAACAACACCAAAATTA+AGG | + | chr5_3:62240448-62240467 | None:intergenic | 25.0% |
| ! | AATATACTCCAAGTTTGATA+TGG | - | chr5_3:62239604-62239623 | Msa0823560:CDS | 25.0% |
| ! | ATATTTACAATTGTTCCACA+TGG | + | chr5_3:62239830-62239849 | None:intergenic | 25.0% |
| ! | TAAAACTAGGAATATATGAG+TGG | - | chr5_3:62240236-62240255 | Msa0823560:intron | 25.0% |
| ! | TATTCACTAATTTCAAACCT+CGG | + | chr5_3:62240281-62240300 | None:intergenic | 25.0% |
| ! | ATATCATATGAATGAATGGT+TGG | - | chr5_3:62240326-62240345 | Msa0823560:intron | 25.0% |
| ! | TCAGATTAAAACCAAATCAA+AGG | + | chr5_3:62240392-62240411 | None:intergenic | 25.0% |
| ! | ACAAAACAACACCAAAATTA+AGG | + | chr5_3:62240448-62240467 | None:intergenic | 25.0% |
| TAGAATCACCATATCAAACT+TGG | + | chr5_3:62239615-62239634 | None:intergenic | 30.0% | |
| ! | AGTTTGAGTTTGTAACCTTA+AGG | - | chr5_3:62239789-62239808 | Msa0823560:intron | 30.0% |
| AATTCAAACATAGCTCCTTA+AGG | + | chr5_3:62239807-62239826 | None:intergenic | 30.0% | |
| TGTGCAAGTTAGAAGATAAA+TGG | + | chr5_3:62240066-62240085 | None:intergenic | 30.0% | |
| ! | AATCACAAAGAAAGTGTACA+TGG | - | chr5_3:62240486-62240505 | Msa0823560:intron | 30.0% |
| ! | CAAAAGAGTATGTGCATATT+AGG | - | chr5_3:62240575-62240594 | Msa0823560:intron | 30.0% |
| TGCATATTAGGATACAACAA+AGG | - | chr5_3:62240587-62240606 | Msa0823560:intron | 30.0% | |
| ATTAGGATACAACAAAGGAA+TGG | - | chr5_3:62240592-62240611 | Msa0823560:intron | 30.0% | |
| ACTCTTTCTTGAGATCTTTA+AGG | + | chr5_3:62240675-62240694 | None:intergenic | 30.0% | |
| !!! | AAGAAAGAGTTTTGTTGCAA+TGG | - | chr5_3:62240685-62240704 | Msa0823560:intron | 30.0% |
| TAGAATCACCATATCAAACT+TGG | + | chr5_3:62239615-62239634 | None:intergenic | 30.0% | |
| ! | AGTTTGAGTTTGTAACCTTA+AGG | - | chr5_3:62239789-62239808 | Msa0823560:intron | 30.0% |
| AATTCAAACATAGCTCCTTA+AGG | + | chr5_3:62239807-62239826 | None:intergenic | 30.0% | |
| TGTGCAAGTTAGAAGATAAA+TGG | + | chr5_3:62240066-62240085 | None:intergenic | 30.0% | |
| ! | AATCACAAAGAAAGTGTACA+TGG | - | chr5_3:62240486-62240505 | Msa0823560:intron | 30.0% |
| ! | CAAAAGAGTATGTGCATATT+AGG | - | chr5_3:62240575-62240594 | Msa0823560:intron | 30.0% |
| TGCATATTAGGATACAACAA+AGG | - | chr5_3:62240587-62240606 | Msa0823560:intron | 30.0% | |
| ATTAGGATACAACAAAGGAA+TGG | - | chr5_3:62240592-62240611 | Msa0823560:intron | 30.0% | |
| ACTCTTTCTTGAGATCTTTA+AGG | + | chr5_3:62240675-62240694 | None:intergenic | 30.0% | |
| !!! | AAGAAAGAGTTTTGTTGCAA+TGG | - | chr5_3:62240685-62240704 | Msa0823560:intron | 30.0% |
| AGAAGAGAGTTGAAGAGATT+GGG | + | chr5_3:62239461-62239480 | None:intergenic | 35.0% | |
| TAGAAGAGAGTTGAAGAGAT+TGG | + | chr5_3:62239462-62239481 | None:intergenic | 35.0% | |
| TCTTTCCAAGTTTCGACAAT+AGG | - | chr5_3:62239757-62239776 | Msa0823560:CDS | 35.0% | |
| TTCAACCTATTGTCGAAACT+TGG | + | chr5_3:62239765-62239784 | None:intergenic | 35.0% | |
| AGCTATGTTTGAATTCCATG+TGG | - | chr5_3:62239812-62239831 | Msa0823560:intron | 35.0% | |
| AACTAAGGAGACCTTTGATT+TGG | - | chr5_3:62240378-62240397 | Msa0823560:intron | 35.0% | |
| CAAATGGATCAAATGTGCTT+GGG | + | chr5_3:62240525-62240544 | None:intergenic | 35.0% | |
| TGGAAATGTTGTGAATTGCA+AGG | - | chr5_3:62240705-62240724 | Msa0823560:intron | 35.0% | |
| AAGGACAACATCAAGATTCA+TGG | - | chr5_3:62240808-62240827 | Msa0823560:CDS | 35.0% | |
| AGAAGAGAGTTGAAGAGATT+GGG | + | chr5_3:62239461-62239480 | None:intergenic | 35.0% | |
| TAGAAGAGAGTTGAAGAGAT+TGG | + | chr5_3:62239462-62239481 | None:intergenic | 35.0% | |
| TCTTTCCAAGTTTCGACAAT+AGG | - | chr5_3:62239757-62239776 | Msa0823560:CDS | 35.0% | |
| TTCAACCTATTGTCGAAACT+TGG | + | chr5_3:62239765-62239784 | None:intergenic | 35.0% | |
| AGCTATGTTTGAATTCCATG+TGG | - | chr5_3:62239812-62239831 | Msa0823560:intron | 35.0% | |
| AACTAAGGAGACCTTTGATT+TGG | - | chr5_3:62240378-62240397 | Msa0823560:intron | 35.0% | |
| CAAATGGATCAAATGTGCTT+GGG | + | chr5_3:62240525-62240544 | None:intergenic | 35.0% | |
| TGGAAATGTTGTGAATTGCA+AGG | - | chr5_3:62240705-62240724 | Msa0823560:intron | 35.0% | |
| AAGGACAACATCAAGATTCA+TGG | - | chr5_3:62240808-62240827 | Msa0823560:CDS | 35.0% | |
| AGTTGAAGAGATTGGGAATG+TGG | + | chr5_3:62239454-62239473 | None:intergenic | 40.0% | |
| TATCTCTATCTGCAGACTAC+AGG | - | chr5_3:62239500-62239519 | Msa0823560:CDS | 40.0% | |
| TCTCTTGATTGCAAGGATCT+AGG | + | chr5_3:62240130-62240149 | None:intergenic | 40.0% | |
| GTGTACTTCTCTTGATTGCA+AGG | + | chr5_3:62240137-62240156 | None:intergenic | 40.0% | |
| CGATCTTCATTTAACAACCG+AGG | - | chr5_3:62240261-62240280 | Msa0823560:intron | 40.0% | |
| ATTAAGGTGCATGCATGCAT+GGG | + | chr5_3:62240432-62240451 | None:intergenic | 40.0% | |
| AATTAAGGTGCATGCATGCA+TGG | + | chr5_3:62240433-62240452 | None:intergenic | 40.0% | |
| ! | GCATGCATGCACCTTAATTT+TGG | - | chr5_3:62240434-62240453 | Msa0823560:intron | 40.0% |
| GCAAATGGATCAAATGTGCT+TGG | + | chr5_3:62240526-62240545 | None:intergenic | 40.0% | |
| ! | CACATTTGATCCATTTGCTG+AGG | - | chr5_3:62240528-62240547 | Msa0823560:intron | 40.0% |
| GATTCTTTAGCCTCAGCAAA+TGG | + | chr5_3:62240541-62240560 | None:intergenic | 40.0% | |
| GTTGTGAATTGCAAGGATCT+TGG | - | chr5_3:62240712-62240731 | Msa0823560:intron | 40.0% | |
| AGTTGAAGAGATTGGGAATG+TGG | + | chr5_3:62239454-62239473 | None:intergenic | 40.0% | |
| TATCTCTATCTGCAGACTAC+AGG | - | chr5_3:62239500-62239519 | Msa0823560:CDS | 40.0% | |
| TCTCTTGATTGCAAGGATCT+AGG | + | chr5_3:62240130-62240149 | None:intergenic | 40.0% | |
| GTGTACTTCTCTTGATTGCA+AGG | + | chr5_3:62240137-62240156 | None:intergenic | 40.0% | |
| CGATCTTCATTTAACAACCG+AGG | - | chr5_3:62240261-62240280 | Msa0823560:intron | 40.0% | |
| ATTAAGGTGCATGCATGCAT+GGG | + | chr5_3:62240432-62240451 | None:intergenic | 40.0% | |
| AATTAAGGTGCATGCATGCA+TGG | + | chr5_3:62240433-62240452 | None:intergenic | 40.0% | |
| ! | GCATGCATGCACCTTAATTT+TGG | - | chr5_3:62240434-62240453 | Msa0823560:intron | 40.0% |
| GCAAATGGATCAAATGTGCT+TGG | + | chr5_3:62240526-62240545 | None:intergenic | 40.0% | |
| ! | CACATTTGATCCATTTGCTG+AGG | - | chr5_3:62240528-62240547 | Msa0823560:intron | 40.0% |
| GATTCTTTAGCCTCAGCAAA+TGG | + | chr5_3:62240541-62240560 | None:intergenic | 40.0% | |
| GTTGTGAATTGCAAGGATCT+TGG | - | chr5_3:62240712-62240731 | Msa0823560:intron | 40.0% | |
| TGAAGAGATTGGGAATGTGG+AGG | + | chr5_3:62239451-62239470 | None:intergenic | 45.0% | |
| TTAAGGTGCATGCATGCATG+GGG | + | chr5_3:62240431-62240450 | None:intergenic | 45.0% | |
| GCTAAAGAATCAGATGCACC+AGG | - | chr5_3:62240550-62240569 | Msa0823560:intron | 45.0% | |
| ! | TGCACATACTCTTTTGCACC+TGG | + | chr5_3:62240571-62240590 | None:intergenic | 45.0% |
| AAGAGCCTAACAACAGTGCA+AGG | - | chr5_3:62240619-62240638 | Msa0823560:intron | 45.0% | |
| TCAGTCCTTGCACTGTTGTT+AGG | + | chr5_3:62240627-62240646 | None:intergenic | 45.0% | |
| AACAGTGCAAGGACTGAAGA+AGG | - | chr5_3:62240630-62240649 | Msa0823560:intron | 45.0% | |
| GGCAAGATTATCCAACTCCA+AGG | - | chr5_3:62240733-62240752 | Msa0823560:intron | 45.0% | |
| ! | CATTCTTGCGTTGATCACCT+TGG | + | chr5_3:62240753-62240772 | None:intergenic | 45.0% |
| TCTCACTTCCTCATTCATGC+TGG | - | chr5_3:62240775-62240794 | Msa0823560:CDS | 45.0% | |
| TAGCAAGACCAGCATGAATG+AGG | + | chr5_3:62240786-62240805 | None:intergenic | 45.0% | |
| !! | TCATGCTGGTCTTGCTAGAA+AGG | - | chr5_3:62240789-62240808 | Msa0823560:CDS | 45.0% |
| TGAAGAGATTGGGAATGTGG+AGG | + | chr5_3:62239451-62239470 | None:intergenic | 45.0% | |
| TTAAGGTGCATGCATGCATG+GGG | + | chr5_3:62240431-62240450 | None:intergenic | 45.0% | |
| GCTAAAGAATCAGATGCACC+AGG | - | chr5_3:62240550-62240569 | Msa0823560:intron | 45.0% | |
| ! | TGCACATACTCTTTTGCACC+TGG | + | chr5_3:62240571-62240590 | None:intergenic | 45.0% |
| AAGAGCCTAACAACAGTGCA+AGG | - | chr5_3:62240619-62240638 | Msa0823560:intron | 45.0% | |
| TCAGTCCTTGCACTGTTGTT+AGG | + | chr5_3:62240627-62240646 | None:intergenic | 45.0% | |
| AACAGTGCAAGGACTGAAGA+AGG | - | chr5_3:62240630-62240649 | Msa0823560:intron | 45.0% | |
| GGCAAGATTATCCAACTCCA+AGG | - | chr5_3:62240733-62240752 | Msa0823560:intron | 45.0% | |
| ! | CATTCTTGCGTTGATCACCT+TGG | + | chr5_3:62240753-62240772 | None:intergenic | 45.0% |
| TCTCACTTCCTCATTCATGC+TGG | - | chr5_3:62240775-62240794 | Msa0823560:CDS | 45.0% | |
| TAGCAAGACCAGCATGAATG+AGG | + | chr5_3:62240786-62240805 | None:intergenic | 45.0% | |
| !! | TCATGCTGGTCTTGCTAGAA+AGG | - | chr5_3:62240789-62240808 | Msa0823560:CDS | 45.0% |
| !!! | ATTTTAACAATTATATTTTT+TGG | - | chr5_3:62239993-62240012 | Msa0823560:intron | 5.0% |
| !!! | ATTTTAACAATTATATTTTT+TGG | - | chr5_3:62239993-62240012 | Msa0823560:intron | 5.0% |
| GAGATTGGGAATGTGGAGGT+GGG | + | chr5_3:62239447-62239466 | None:intergenic | 50.0% | |
| AGAGATTGGGAATGTGGAGG+TGG | + | chr5_3:62239448-62239467 | None:intergenic | 50.0% | |
| ! | TGCGTTGATCACCTTGGAGT+TGG | + | chr5_3:62240747-62240766 | None:intergenic | 50.0% |
| GAGATTGGGAATGTGGAGGT+GGG | + | chr5_3:62239447-62239466 | None:intergenic | 50.0% | |
| AGAGATTGGGAATGTGGAGG+TGG | + | chr5_3:62239448-62239467 | None:intergenic | 50.0% | |
| ! | TGCGTTGATCACCTTGGAGT+TGG | + | chr5_3:62240747-62240766 | None:intergenic | 50.0% |
| GCATGCATGCATGGGGATCC+AGG | + | chr5_3:62240424-62240443 | None:intergenic | 60.0% | |
| GCATGCATGCATGGGGATCC+AGG | + | chr5_3:62240424-62240443 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 62239444 | 62240837 | 62239444 | ID=Msa0823560;Name=Msa0823560 |
| chr5_3 | mRNA | 62239444 | 62240837 | 62239444 | ID=Msa0823560-mRNA-1;Parent=Msa0823560;Name=Msa0823560-mRNA-1;_AED=0.15;_eAED=0.20;_QI=0|0|0.5|1|0|0.5|2|0|143 |
| chr5_3 | exon | 62239444 | 62239797 | 62239444 | ID=Msa0823560-mRNA-1:exon:19369;Parent=Msa0823560-mRNA-1 |
| chr5_3 | exon | 62240760 | 62240837 | 62240760 | ID=Msa0823560-mRNA-1:exon:19368;Parent=Msa0823560-mRNA-1 |
| chr5_3 | CDS | 62240760 | 62240837 | 62240760 | ID=Msa0823560-mRNA-1:cds;Parent=Msa0823560-mRNA-1 |
| chr5_3 | CDS | 62239444 | 62239797 | 62239444 | ID=Msa0823560-mRNA-1:cds;Parent=Msa0823560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
