AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050730 MtrunA17_Chr1g0155721 96.581 117 4 0 2 118 3 119 3.31e-78 226
Msa0050730 MtrunA17_Chr3g0142051 80.909 110 21 0 2 111 3 112 2.17e-62 186
Msa0050730 MtrunA17_Chr5g0404831 67.593 108 35 0 4 111 7 114 7.78e-53 162
Msa0050730 MtrunA17_Chr7g0216481 50.980 102 50 0 11 112 32 133 4.85e-37 122
Msa0050730 MtrunA17_Chr8g0393201 50.000 108 54 0 4 111 226 333 6.71e-36 125
Msa0050730 MtrunA17_Chr8g0334481 40.566 106 63 0 3 108 24 129 3.11e-32 110
Msa0050730 MtrunA17_Chr7g0245141 39.286 112 68 0 3 114 22 133 6.84e-30 104
Msa0050730 MtrunA17_Chr5g0415761 44.954 109 60 0 5 113 20 128 1.20e-28 100
Msa0050730 MtrunA17_Chr5g0415771 45.283 106 58 0 7 112 21 126 7.71e-27 96.3
Msa0050730 MtrunA17_Chr2g0280411 38.261 115 71 0 4 118 8 122 1.60e-25 92.8
Msa0050730 MtrunA17_Chr5g0415741 42.202 109 63 0 5 113 18 126 3.03e-25 92.4
Msa0050730 MtrunA17_Chr2g0319291 33.929 112 74 0 4 115 9 120 4.32e-21 81.6
Msa0050730 MtrunA17_Chr4g0052481 38.298 94 56 1 8 99 62 155 1.30e-20 81.6
Msa0050730 MtrunA17_Chr4g0042051 35.294 102 66 0 4 105 9 110 1.26e-19 77.8
Msa0050730 MtrunA17_Chr1g0201781 40.789 76 44 1 25 99 76 151 3.29e-18 75.5
Msa0050730 MtrunA17_Chr3g0125821 35.780 109 65 3 8 114 70 175 4.69e-17 72.8
Msa0050730 MtrunA17_Chr6g0488561 30.172 116 76 3 5 117 75 188 7.35e-16 70.1
Msa0050730 MtrunA17_Chr7g0249461 38.095 105 61 2 5 108 79 180 1.36e-15 68.9
Msa0050730 MtrunA17_Chr3g0142031 70.732 41 12 0 61 101 5 45 1.45e-15 65.5
Msa0050730 MtrunA17_Chr7g0264661 33.721 86 55 1 26 111 44 127 1.73e-14 64.7
Msa0050730 MtrunA17_Chr2g0317731 39.474 76 45 1 25 99 84 159 4.15e-14 64.7
Msa0050730 MtrunA17_Chr3g0092051 28.319 113 76 3 4 113 86 196 1.80e-13 64.7
Msa0050730 MtrunA17_Chr8g0360031 36.364 88 54 2 25 110 87 174 3.44e-13 62.4
Msa0050730 MtrunA17_Chr1g0211871 36.842 95 48 4 26 114 85 173 5.23e-13 62.0
Msa0050730 MtrunA17_Chr4g0047431 31.132 106 69 1 5 110 3 104 1.01e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050730 AT3G51030.1 68.519 108 34 0 4 111 5 112 1.28e-55 169
Msa0050730 AT1G45145.1 58.559 111 46 0 1 111 1 111 7.21e-48 149
Msa0050730 AT5G42980.1 58.120 117 49 0 1 117 1 117 8.29e-47 147
Msa0050730 AT1G19730.1 57.265 117 49 1 2 117 3 119 4.67e-43 137
Msa0050730 AT3G17880.2 41.667 108 63 0 4 111 262 369 3.51e-31 114
Msa0050730 AT3G17880.1 41.667 108 63 0 4 111 269 376 4.44e-31 113
Msa0050730 AT5G39950.1 42.991 107 61 0 6 112 26 132 5.17e-31 107
Msa0050730 AT3G56420.1 41.346 104 61 0 2 105 37 140 1.14e-29 104
Msa0050730 AT3G56420.2 41.346 104 61 0 2 105 37 140 1.14e-29 104
Msa0050730 AT3G56420.3 41.346 104 61 0 2 105 37 140 1.14e-29 104
Msa0050730 AT3G08710.2 38.182 110 68 0 5 114 23 132 5.98e-29 102
Msa0050730 AT3G08710.3 38.182 110 68 0 5 114 23 132 5.98e-29 102
Msa0050730 AT3G08710.1 38.182 110 68 0 5 114 23 132 5.98e-29 102
Msa0050730 AT1G59730.1 39.286 112 68 0 1 112 17 128 1.61e-28 101
Msa0050730 AT1G69880.1 37.963 108 67 0 7 114 39 146 1.02e-26 97.1
Msa0050730 AT2G40790.2 40.196 102 61 0 4 105 39 140 1.78e-25 94.0
Msa0050730 AT2G40790.1 40.196 102 61 0 4 105 39 140 1.78e-25 94.0
Msa0050730 AT1G11530.1 39.604 101 61 0 5 105 2 102 8.10e-23 86.3
Msa0050730 AT2G35010.2 37.615 109 66 1 2 108 81 189 1.31e-20 82.8
Msa0050730 AT2G35010.1 37.615 109 66 1 2 108 81 189 1.31e-20 82.8
Msa0050730 AT1G43560.1 37.778 90 50 2 25 108 74 163 2.12e-17 73.6
Msa0050730 AT1G76760.1 39.474 76 45 1 25 99 79 154 7.22e-17 72.4
Msa0050730 AT4G26160.1 32.727 110 69 3 6 112 94 201 1.49e-16 72.8
Msa0050730 AT5G16400.1 41.463 82 47 1 28 108 98 179 4.31e-16 70.9
Msa0050730 AT1G31020.1 38.372 86 51 1 15 98 59 144 9.08e-16 69.3
Msa0050730 AT3G02730.1 38.636 88 53 1 28 114 88 175 1.28e-15 69.3
Msa0050730 AT4G32580.1 31.915 94 64 0 17 110 11 104 1.41e-12 60.8
Msa0050730 AT1G03680.1 30.088 113 72 4 3 111 69 178 1.44e-12 61.2
Msa0050730 AT3G15360.1 34.940 83 52 2 30 110 107 189 1.62e-12 61.6
Msa0050730 AT3G53220.1 31.395 86 57 1 26 111 42 125 9.42e-12 58.2
Msa0050730 AT4G29670.1 26.364 110 76 3 6 112 104 211 1.24e-11 59.7
Msa0050730 AT4G29670.2 27.711 83 58 1 6 88 104 184 2.24e-11 58.9
Msa0050730 AT4G04950.1 31.915 94 64 0 17 110 11 104 2.66e-11 59.7
Msa0050730 AT4G03520.1 32.530 83 54 2 30 110 101 183 4.48e-11 57.4

Find 46 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAATGGTCCCTTCTTC+TGG 0.228096 1_2:+4741914 Msa0050730:three_prime_UTR
GGCAATTATGTTGATGAAAA+TGG 0.244274 1_2:+4741901 Msa0050730:three_prime_UTR
ATGACTTCAGGAGTCTTCTT+AGG 0.296484 1_2:-4741186 None:intergenic
TTAGGAATCTCAGCTAGAAT+TGG 0.349137 1_2:-4741168 None:intergenic
ATAATACATTTATCCTTTGT+CGG 0.372131 1_2:+4741746 Msa0050730:three_prime_UTR
AGAAGGTAAGGAAGTGGATA+AGG 0.412033 1_2:+4741625 Msa0050730:CDS
TGACATGGTCCCTTTGTTGA+TGG 0.437230 1_2:+4741876 Msa0050730:three_prime_UTR
CTTATTCTTGAAAGAAGGTA+AGG 0.442943 1_2:+4741613 Msa0050730:CDS
ATATATATCTGCATAATTGT+TGG 0.444889 1_2:-4741956 Msa0050740:three_prime_UTR
ACCTTCTTATTCTTGAAAGA+AGG 0.451509 1_2:+4741608 Msa0050730:CDS
ACCTTGAGGAAGATGACTTC+AGG 0.453976 1_2:-4741198 None:intergenic
AAATGCAATCACCAAGCATA+AGG 0.465102 1_2:+4741676 Msa0050730:CDS
AATAGTAATCAACCAGAAGA+AGG 0.477075 1_2:-4741926 None:intergenic
TAAGGTAGTTGGTGCTAGGA+AGG 0.479587 1_2:+4741643 Msa0050730:CDS
AGTCACTACTCAATTGAAGT+AGG 0.485104 1_2:-4741812 None:intergenic
TGGATAAGGTAGTTGGTGCT+AGG 0.488936 1_2:+4741639 Msa0050730:CDS
AAGGAAGTGGATAAGGTAGT+TGG 0.491604 1_2:+4741632 Msa0050730:CDS
AACAGTTGCATCCTTATGCT+TGG 0.492616 1_2:-4741687 None:intergenic
ACCTTCTTTCAAGAATAAGA+AGG 0.495256 1_2:-4741609 None:intergenic
TTGAAAATAAATTGTTGCAT+TGG 0.497916 1_2:+4741789 Msa0050730:three_prime_UTR
TTCAGAGTGTTGCTGAGGAA+TGG 0.506641 1_2:+4741567 Msa0050730:intron
GGTGGATATTGATGAAGTAA+AGG 0.509236 1_2:+4741218 Msa0050730:CDS
ATGGTCCCTTTGTTGATGGT+TGG 0.517569 1_2:+4741880 Msa0050730:three_prime_UTR
CTAGAATTGGAGCAATAAAA+CGG 0.524722 1_2:-4741155 None:intergenic
CTTGAAAGAAGGTAAGGAAG+TGG 0.537499 1_2:+4741619 Msa0050730:CDS
TGGTGCTAGGAAGGAAGAGC+TGG 0.539272 1_2:+4741652 Msa0050730:CDS
TCTTTCAAGAATAAGAAGGT+TGG 0.555397 1_2:-4741605 None:intergenic
TCCTGAAGTCATCTTCCTCA+AGG 0.561588 1_2:+4741197 Msa0050730:CDS
CTCCTCCTTCCACTGTTCAA+CGG 0.563671 1_2:-4739572 None:intergenic
ATAGTAATCAACCAGAAGAA+GGG 0.567472 1_2:-4741925 None:intergenic
AATTGCCAACCATCAACAAA+GGG 0.573039 1_2:-4741885 None:intergenic
GAAAAGATGAAAACCGACAA+AGG 0.590952 1_2:-4741759 None:intergenic
CATTGAATAATAGATTGTGG+TGG 0.597012 1_2:+4741104 Msa0050730:intron
GCAGCTGAAGGACAGGTGAT+CGG 0.598988 1_2:+4739541 Msa0050730:CDS
GTGGAAGGAGGAGATCCAGA+AGG 0.606920 1_2:+4739582 Msa0050730:CDS
TGGAAGGAGGAGATCCAGAA+GGG 0.610530 1_2:+4739583 Msa0050730:CDS
TGCTGAGGAATGGTCTGTTG+AGG 0.618156 1_2:+4741577 Msa0050730:CDS
CTTCATCAATATCCACCTTG+AGG 0.619089 1_2:-4741212 None:intergenic
TCATACCGTTGAACAGTGGA+AGG 0.620633 1_2:+4739567 Msa0050730:CDS
TAATTGCCAACCATCAACAA+AGG 0.621385 1_2:-4741886 None:intergenic
ATTGGAGCAATAAAACGGCA+TGG 0.627618 1_2:-4741150 None:intergenic
CCTATTTCAGAGTGTTGCTG+AGG 0.630806 1_2:+4741562 Msa0050730:intron
TACCGTTGAACAGTGGAAGG+AGG 0.648899 1_2:+4739570 Msa0050730:CDS
TGAAGTCATCTTCCTCAAGG+TGG 0.658466 1_2:+4741200 Msa0050730:CDS
GTGTTCATACCGTTGAACAG+TGG 0.666984 1_2:+4739563 Msa0050730:CDS
ATAATTTGATGTAAATGACA+TGG 0.737526 1_2:+4741861 Msa0050730:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTATATTTTAGTGTATTT+GGG + chr1_2:4739847-4739866 Msa0050730:intron 15.0%
!!! ACAATTTTGTTTTTCATTAT+TGG - chr1_2:4740182-4740201 None:intergenic 15.0%
!! ATAAAATAAACTCTAAACAA+GGG + chr1_2:4740643-4740662 Msa0050730:intron 15.0%
!! TTAAATTAAGCATTTAATGT+AGG - chr1_2:4740696-4740715 None:intergenic 15.0%
!!! ATGTTTCTAATATTTTAAGA+TGG + chr1_2:4741474-4741493 Msa0050730:intron 15.0%
!!! CTTTTGGATCAAAATATATA+GGG - chr1_2:4739747-4739766 None:intergenic 20.0%
!!! ACTTTTGGATCAAAATATAT+AGG - chr1_2:4739748-4739767 None:intergenic 20.0%
!!! CATGTATATTTTAGTGTATT+TGG + chr1_2:4739846-4739865 Msa0050730:intron 20.0%
!! GTTTGTGATGATATATTATA+TGG + chr1_2:4739970-4739989 Msa0050730:intron 20.0%
!! TGTTAAAAACCTAATTATAG+TGG + chr1_2:4740004-4740023 Msa0050730:intron 20.0%
!! CAAATTACTTATATATACTC+TGG - chr1_2:4740248-4740267 None:intergenic 20.0%
!! CAGAGTATATATAAGTAATT+TGG + chr1_2:4740246-4740265 Msa0050730:intron 20.0%
!! TTCTTCGAGTATTATATTAT+AGG - chr1_2:4740534-4740553 None:intergenic 20.0%
!!! CTTGTTTAGAGTTTATTTTA+TGG - chr1_2:4740644-4740663 None:intergenic 20.0%
!! CATAAAATAAACTCTAAACA+AGG + chr1_2:4740642-4740661 Msa0050730:intron 20.0%
!!! CAACAAAGAATTTATTTTGT+TGG + chr1_2:4740885-4740904 Msa0050730:intron 20.0%
!! ATAAAGGTGGTTATAAATTA+AGG - chr1_2:4740956-4740975 None:intergenic 20.0%
!! TTTCATTGAATAATAGATTG+TGG + chr1_2:4741101-4741120 Msa0050730:intron 20.0%
!! ATTAAACTTGAGAAAGAATA+AGG - chr1_2:4741269-4741288 None:intergenic 20.0%
!! ATAATACATTTATCCTTTGT+CGG + chr1_2:4741746-4741765 Msa0050730:three_prime_UTR 20.0%
!! TTGAAAATAAATTGTTGCAT+TGG + chr1_2:4741789-4741808 Msa0050730:three_prime_UTR 20.0%
!! ATAATTTGATGTAAATGACA+TGG + chr1_2:4741861-4741880 Msa0050730:three_prime_UTR 20.0%
!! ATATATATCTGCATAATTGT+TGG - chr1_2:4741959-4741978 Msa0050740:three_prime_UTR 20.0%
! ATTCGAAAGAAGAGAAAAAA+TGG + chr1_2:4739519-4739538 Msa0050730:exon 25.0%
!!! TTTGATGAATACCAGTTTTT+TGG - chr1_2:4739617-4739636 None:intergenic 25.0%
!! GAACAATTCATAAACACTTT+TGG - chr1_2:4739763-4739782 None:intergenic 25.0%
!!! TATTTTGACCATACTTTAGT+AGG - chr1_2:4740033-4740052 None:intergenic 25.0%
! ATGATTATGACATTCATATG+TGG - chr1_2:4740592-4740611 None:intergenic 25.0%
!! TATTTTATGGCACAAGTATT+TGG - chr1_2:4740631-4740650 None:intergenic 25.0%
! AAAAAAACTAACCTAGAGAA+TGG - chr1_2:4740671-4740690 None:intergenic 25.0%
!!! TTGCCATTTTTATATATGCA+TGG + chr1_2:4740757-4740776 Msa0050730:intron 25.0%
! AGGCTAATAATAACATTGAA+AGG - chr1_2:4740811-4740830 None:intergenic 25.0%
! AAATTACTAAGTTAGTGTCA+CGG - chr1_2:4740840-4740859 None:intergenic 25.0%
! CAAAACAAATAAGCACATAA+AGG - chr1_2:4740972-4740991 None:intergenic 25.0%
!! CTTTATGTGCTTATTTGTTT+TGG + chr1_2:4740970-4740989 Msa0050730:intron 25.0%
! TAATTAGGTTTTTAACACCG+TGG - chr1_2:4740001-4740020 None:intergenic 30.0%
AGTAGGAAACCACTATAATT+AGG - chr1_2:4740016-4740035 None:intergenic 30.0%
TAATTTAACCGTCAAACCTA+TGG + chr1_2:4740051-4740070 Msa0050730:intron 30.0%
!! CACAGTTGGCAAATTTTAAT+TGG - chr1_2:4740466-4740485 None:intergenic 30.0%
!!! AGAATTTTTCAAGACACAGT+TGG - chr1_2:4740480-4740499 None:intergenic 30.0%
GGACCATGCATATATAAAAA+TGG - chr1_2:4740763-4740782 None:intergenic 30.0%
! TTTTTATATATGCATGGTCC+AGG + chr1_2:4740763-4740782 Msa0050730:intron 30.0%
AACAAATAAGCACATAAAGG+TGG - chr1_2:4740969-4740988 None:intergenic 30.0%
CATTGAATAATAGATTGTGG+TGG + chr1_2:4741104-4741123 Msa0050730:intron 30.0%
CTAGAATTGGAGCAATAAAA+CGG - chr1_2:4741158-4741177 None:intergenic 30.0%
! TGTAGTTTTTGTCAAAATCG+TGG + chr1_2:4741349-4741368 Msa0050730:intron 30.0%
GATCATAAGATGACATAACA+TGG - chr1_2:4741429-4741448 None:intergenic 30.0%
TCTTTCAAGAATAAGAAGGT+TGG - chr1_2:4741608-4741627 None:intergenic 30.0%
ACCTTCTTATTCTTGAAAGA+AGG + chr1_2:4741608-4741627 Msa0050730:CDS 30.0%
ACCTTCTTTCAAGAATAAGA+AGG - chr1_2:4741612-4741631 None:intergenic 30.0%
CTTATTCTTGAAAGAAGGTA+AGG + chr1_2:4741613-4741632 Msa0050730:CDS 30.0%
! GGCAATTATGTTGATGAAAA+TGG + chr1_2:4741901-4741920 Msa0050730:three_prime_UTR 30.0%
ATAGTAATCAACCAGAAGAA+GGG - chr1_2:4741928-4741947 None:intergenic 30.0%
AATAGTAATCAACCAGAAGA+AGG - chr1_2:4741929-4741948 None:intergenic 30.0%
!! AGAGGAGATTAGTCTCATAA+CGG + chr1_2:4739935-4739954 Msa0050730:intron 35.0%
!! GATTAGTCTCATAACGGATT+TGG + chr1_2:4739941-4739960 Msa0050730:intron 35.0%
TATATTATATGGAGCCACCA+CGG + chr1_2:4739981-4740000 Msa0050730:intron 35.0%
AGTGGTTTCCTACTAAAGTA+TGG + chr1_2:4740022-4740041 Msa0050730:intron 35.0%
GCACTATTTGCCATAATTCA+AGG + chr1_2:4740401-4740420 Msa0050730:intron 35.0%
CTATTTGCCATAATTCAAGG+AGG + chr1_2:4740404-4740423 Msa0050730:intron 35.0%
TTAGGAATCTCAGCTAGAAT+TGG - chr1_2:4741171-4741190 None:intergenic 35.0%
GGTGGATATTGATGAAGTAA+AGG + chr1_2:4741218-4741237 Msa0050730:CDS 35.0%
!! AACTAGTCTTAAAGCCGATT+CGG + chr1_2:4741539-4741558 Msa0050730:intron 35.0%
AAATGCAATCACCAAGCATA+AGG + chr1_2:4741676-4741695 Msa0050730:CDS 35.0%
GAAAAGATGAAAACCGACAA+AGG - chr1_2:4741762-4741781 None:intergenic 35.0%
AGTCACTACTCAATTGAAGT+AGG - chr1_2:4741815-4741834 None:intergenic 35.0%
AATTGCCAACCATCAACAAA+GGG - chr1_2:4741888-4741907 None:intergenic 35.0%
TAATTGCCAACCATCAACAA+AGG - chr1_2:4741889-4741908 None:intergenic 35.0%
AGAGAAAAAATGGCAGCTGA+AGG + chr1_2:4739529-4739548 Msa0050730:exon 40.0%
!!! TTTTGGAGTCATTTCCCTTC+TGG - chr1_2:4739600-4739619 None:intergenic 40.0%
GGGAAATGACTCCAAAAAAC+TGG + chr1_2:4739603-4739622 Msa0050730:CDS 40.0%
AATATTGCCCTAGATCATCG+TGG + chr1_2:4739799-4739818 Msa0050730:intron 40.0%
TTAGACCGCAACTTAAAGCT+CGG - chr1_2:4739894-4739913 None:intergenic 40.0%
! TTAGGTTTTTAACACCGTGG+TGG - chr1_2:4739998-4740017 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG - chr1_2:4740393-4740412 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + chr1_2:4740427-4740446 Msa0050730:intron 40.0%
!! AAACAAGGGTACCATTCTCT+AGG + chr1_2:4740657-4740676 Msa0050730:intron 40.0%
!! AGTTAGTGTCACGGTTTTAG+AGG - chr1_2:4740831-4740850 None:intergenic 40.0%
!!! TGGTGGATTTTACTGCTTCA+TGG + chr1_2:4741121-4741140 Msa0050730:CDS 40.0%
! GATTTTACTGCTTCATGGTG+TGG + chr1_2:4741126-4741145 Msa0050730:CDS 40.0%
ATTGGAGCAATAAAACGGCA+TGG - chr1_2:4741153-4741172 None:intergenic 40.0%
ATGACTTCAGGAGTCTTCTT+AGG - chr1_2:4741189-4741208 None:intergenic 40.0%
CTTCATCAATATCCACCTTG+AGG - chr1_2:4741215-4741234 None:intergenic 40.0%
CTTGAAAGAAGGTAAGGAAG+TGG + chr1_2:4741619-4741638 Msa0050730:CDS 40.0%
AGAAGGTAAGGAAGTGGATA+AGG + chr1_2:4741625-4741644 Msa0050730:CDS 40.0%
AAGGAAGTGGATAAGGTAGT+TGG + chr1_2:4741632-4741651 Msa0050730:CDS 40.0%
AACAGTTGCATCCTTATGCT+TGG - chr1_2:4741690-4741709 None:intergenic 40.0%
ATGAAAATGGTCCCTTCTTC+TGG + chr1_2:4741914-4741933 Msa0050730:three_prime_UTR 40.0%
AAAAATGGCAGCTGAAGGAC+AGG + chr1_2:4739534-4739553 Msa0050730:exon 45.0%
GTGTTCATACCGTTGAACAG+TGG + chr1_2:4739563-4739582 Msa0050730:CDS 45.0%
TCATACCGTTGAACAGTGGA+AGG + chr1_2:4739567-4739586 Msa0050730:CDS 45.0%
ACACTGTCCACGATGATCTA+GGG - chr1_2:4739809-4739828 None:intergenic 45.0%
AACACTGTCCACGATGATCT+AGG - chr1_2:4739810-4739829 None:intergenic 45.0%
!! ATCACCCGAGCTTTAAGTTG+CGG + chr1_2:4739886-4739905 Msa0050730:intron 45.0%
TAGACCGCAACTTAAAGCTC+GGG - chr1_2:4739893-4739912 None:intergenic 45.0%
TAATCTCCTCTCGTGTGCTT+AGG - chr1_2:4739926-4739945 None:intergenic 45.0%
CTTGTGCACCATAGGTTTGA+CGG - chr1_2:4740062-4740081 None:intergenic 45.0%
TTGTCTCACTTGTGCACCAT+AGG - chr1_2:4740070-4740089 None:intergenic 45.0%
TGCCATAATTCAAGGAGGTG+TGG + chr1_2:4740409-4740428 Msa0050730:intron 45.0%
AGCCACACCTCCTTGAATTA+TGG - chr1_2:4740414-4740433 None:intergenic 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG + chr1_2:4740421-4740440 Msa0050730:intron 45.0%
TAACGCAAGTTCGTTCATCC+TGG - chr1_2:4740784-4740803 None:intergenic 45.0%
TCCTGAAGTCATCTTCCTCA+AGG + chr1_2:4741197-4741216 Msa0050730:CDS 45.0%
ACCTTGAGGAAGATGACTTC+AGG - chr1_2:4741201-4741220 None:intergenic 45.0%
TGAAGTCATCTTCCTCAAGG+TGG + chr1_2:4741200-4741219 Msa0050730:CDS 45.0%
!! CACTCTGAAATAGGCCGAAT+CGG - chr1_2:4741556-4741575 None:intergenic 45.0%
!! CCTCAGCAACACTCTGAAAT+AGG - chr1_2:4741565-4741584 None:intergenic 45.0%
!! CCTATTTCAGAGTGTTGCTG+AGG + chr1_2:4741562-4741581 Msa0050730:intron 45.0%
!! TTCAGAGTGTTGCTGAGGAA+TGG + chr1_2:4741567-4741586 Msa0050730:intron 45.0%
! TGGATAAGGTAGTTGGTGCT+AGG + chr1_2:4741639-4741658 Msa0050730:CDS 45.0%
!! TAAGGTAGTTGGTGCTAGGA+AGG + chr1_2:4741643-4741662 Msa0050730:CDS 45.0%
TGACATGGTCCCTTTGTTGA+TGG + chr1_2:4741876-4741895 Msa0050730:three_prime_UTR 45.0%
!! ATGGTCCCTTTGTTGATGGT+TGG + chr1_2:4741880-4741899 Msa0050730:three_prime_UTR 45.0%
TACCGTTGAACAGTGGAAGG+AGG + chr1_2:4739570-4739589 Msa0050730:CDS 50.0%
CTCCTCCTTCCACTGTTCAA+CGG - chr1_2:4739575-4739594 None:intergenic 50.0%
TGGAAGGAGGAGATCCAGAA+GGG + chr1_2:4739583-4739602 Msa0050730:CDS 50.0%
TCCTCTCGTGTGCTTAGGTT+CGG - chr1_2:4739921-4739940 None:intergenic 50.0%
TGCTGAGGAATGGTCTGTTG+AGG + chr1_2:4741577-4741596 Msa0050730:CDS 50.0%
GCAGCTGAAGGACAGGTGAT+CGG + chr1_2:4739541-4739560 Msa0050730:CDS 55.0%
GTGGAAGGAGGAGATCCAGA+AGG + chr1_2:4739582-4739601 Msa0050730:CDS 55.0%
TCCGAACCTAAGCACACGAG+AGG + chr1_2:4739917-4739936 Msa0050730:intron 55.0%
! TGGTGCTAGGAAGGAAGAGC+TGG + chr1_2:4741652-4741671 Msa0050730:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4739474 4741997 4739474 ID=Msa0050730;Name=Msa0050730
chr1_2 mRNA 4739474 4741997 4739474 ID=Msa0050730-mRNA-1;Parent=Msa0050730;Name=Msa0050730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=64|1|1|1|1|1|3|276|119
chr1_2 exon 4739474 4739624 4739474 ID=Msa0050730-mRNA-1:exon:1233;Parent=Msa0050730-mRNA-1
chr1_2 exon 4741117 4741239 4741117 ID=Msa0050730-mRNA-1:exon:1234;Parent=Msa0050730-mRNA-1
chr1_2 exon 4741572 4741997 4741572 ID=Msa0050730-mRNA-1:exon:1235;Parent=Msa0050730-mRNA-1
chr1_2 five_prime_UTR 4739474 4739537 4739474 ID=Msa0050730-mRNA-1:five_prime_utr;Parent=Msa0050730-mRNA-1
chr1_2 CDS 4739538 4739624 4739538 ID=Msa0050730-mRNA-1:cds;Parent=Msa0050730-mRNA-1
chr1_2 CDS 4741117 4741239 4741117 ID=Msa0050730-mRNA-1:cds;Parent=Msa0050730-mRNA-1
chr1_2 CDS 4741572 4741721 4741572 ID=Msa0050730-mRNA-1:cds;Parent=Msa0050730-mRNA-1
chr1_2 three_prime_UTR 4741722 4741997 4741722 ID=Msa0050730-mRNA-1:three_prime_utr;Parent=Msa0050730-mRNA-1
Gene Sequence

>Msa0050730

ATGGCAGCTGAAGGACAGGTGATCGGTGTTCATACCGTTGAACAGTGGAAGGAGGAGATCCAGAAGGGAAATGACTCCAAAAAACTGATTGTGGTGGATTTTACTGCTTCATGGTGTGGTCCATGCCGTTTTATTGCTCCAATTCTAGCTGAGATTCCTAAGAAGACTCCTGAAGTCATCTTCCTCAAGGTGGATATTGATGAAGTAAAGAGTGTTGCTGAGGAATGGTCTGTTGAGGCTATGCCAACCTTCTTATTCTTGAAAGAAGGTAAGGAAGTGGATAAGGTAGTTGGTGCTAGGAAGGAAGAGCTGGAAAATGCAATCACCAAGCATAAGGATGCAACTGTTGCTACTACTTGA

Protein sequence

>Msa0050730

MAAEGQVIGVHTVEQWKEEIQKGNDSKKLIVVDFTASWCGPCRFIAPILAEIPKKTPEVIFLKVDIDEVKSVAEEWSVEAMPTFLFLKEGKEVDKVVGARKEELENAITKHKDATVATT*