Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862640 | XP_003617548.1 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 3.94e-74 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862640 | sp|O82569|SUI1_SPUBR | 75.229 | 109 | 26 | 1 | 3 | 110 | 5 | 113 | 7.36e-57 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862640 | G7K3H5 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 1.88e-74 | 225 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050730 | Msa0862640 | 0.809655 | 1.699881e-50 | -8.615850e-47 |
| Msa0823560 | Msa0862640 | 0.991142 | 4.187892e-186 | -8.615850e-47 |
| Msa0253370 | Msa0862640 | 0.804816 | 1.801604e-49 | -8.615850e-47 |
| Msa0330400 | Msa0862640 | 0.801977 | 6.978048e-49 | -8.615850e-47 |
| Msa0862640 | Msa1244830 | 0.812261 | 4.633608e-51 | -8.615850e-47 |
| Msa0862640 | Msa1408790 | 0.800167 | 1.636366e-48 | -8.615850e-47 |
| Msa0862640 | Msa1436040 | 0.801439 | 8.998337e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862640 | MtrunA17_Chr5g0444201 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 3.63e-78 | 225 |
| Msa0862640 | MtrunA17_Chr3g0098971 | 84.404 | 109 | 17 | 0 | 2 | 110 | 4 | 112 | 3.07e-65 | 192 |
| Msa0862640 | MtrunA17_Chr4g0024171 | 71.560 | 109 | 30 | 1 | 3 | 110 | 5 | 113 | 9.29e-56 | 168 |
| Msa0862640 | MtrunA17_Chr2g0319561 | 72.072 | 111 | 29 | 1 | 2 | 110 | 4 | 114 | 6.68e-55 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0862640 | AT5G54940.1 | 81.651 | 109 | 20 | 0 | 2 | 110 | 4 | 112 | 6.80e-64 | 189 |
| Msa0862640 | AT5G54940.3 | 81.651 | 109 | 20 | 0 | 2 | 110 | 4 | 112 | 6.80e-64 | 189 |
| Msa0862640 | AT5G54940.2 | 81.651 | 109 | 20 | 0 | 2 | 110 | 4 | 112 | 6.80e-64 | 189 |
| Msa0862640 | AT1G54290.1 | 72.727 | 110 | 29 | 1 | 2 | 110 | 4 | 113 | 8.44e-58 | 174 |
| Msa0862640 | AT4G27130.1 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.13e-57 | 174 |
| Msa0862640 | AT5G54760.2 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
| Msa0862640 | AT5G54760.4 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
| Msa0862640 | AT5G54760.3 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
| Msa0862640 | AT5G54760.1 | 73.636 | 110 | 28 | 1 | 2 | 110 | 4 | 113 | 1.94e-57 | 173 |
Find 29 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTTTCTTGAGATCTTTA+AGG | 0.098306 | 5_4:+62350980 | None:intergenic |
| CAAAAGAGTATGTGCATATT+AGG | 0.278072 | 5_4:-62351077 | Msa0862640:CDS |
| TCAGTCCTTGCACTGTTGTT+AGG | 0.278405 | 5_4:+62351028 | None:intergenic |
| TAGAAGAGAGTTGAAGAGAT+TGG | 0.333969 | 5_4:+62352194 | None:intergenic |
| AAGGACAACATCAAGATTCA+TGG | 0.385779 | 5_4:-62350844 | Msa0862640:CDS |
| AGAAGAGAGTTGAAGAGATT+GGG | 0.422313 | 5_4:+62352195 | None:intergenic |
| TCATGCTGGTCTTGCTAGAA+AGG | 0.426864 | 5_4:-62350863 | Msa0862640:CDS |
| AGTTGAAGAGATTGGGAATG+TGG | 0.436578 | 5_4:+62352202 | None:intergenic |
| TATCTCTATCTGCAGACTAC+AGG | 0.445137 | 5_4:-62352153 | Msa0862640:intron |
| TGCGTTGATCACCTTGGAGT+TGG | 0.445951 | 5_4:+62350908 | None:intergenic |
| GATTCTTTAGCCTCAGCAAA+TGG | 0.452308 | 5_4:+62351114 | None:intergenic |
| TCTCACTTCCTCATTCATGC+TGG | 0.461083 | 5_4:-62350877 | Msa0862640:CDS |
| GTTGTGAATTGCAAGGATCT+TGG | 0.473894 | 5_4:-62350940 | Msa0862640:CDS |
| GCAAATGGATCAAATGTGCT+TGG | 0.480564 | 5_4:+62351129 | None:intergenic |
| AGAGATTGGGAATGTGGAGG+TGG | 0.498637 | 5_4:+62352208 | None:intergenic |
| CATTCTTGCGTTGATCACCT+TGG | 0.510216 | 5_4:+62350902 | None:intergenic |
| CAAATGGATCAAATGTGCTT+GGG | 0.511747 | 5_4:+62351130 | None:intergenic |
| CACATTTGATCCATTTGCTG+AGG | 0.553489 | 5_4:-62351124 | Msa0862640:CDS |
| AACAGTGCAAGGACTGAAGA+AGG | 0.557278 | 5_4:-62351022 | Msa0862640:CDS |
| ATTAGGATACAACAAAGGAA+TGG | 0.567289 | 5_4:-62351060 | Msa0862640:CDS |
| GAGATTGGGAATGTGGAGGT+GGG | 0.587196 | 5_4:+62352209 | None:intergenic |
| TAGCAAGACCAGCATGAATG+AGG | 0.588886 | 5_4:+62350869 | None:intergenic |
| AATCACAAAGAAAGTGTACA+TGG | 0.596673 | 5_4:-62351166 | Msa0862640:exon |
| GGCAAGATTATCCAACTCCA+AGG | 0.618688 | 5_4:-62350919 | Msa0862640:CDS |
| AAGAGCCTAACAACAGTGCA+AGG | 0.631107 | 5_4:-62351033 | Msa0862640:CDS |
| GCTAAAGAATCAGATGCACC+AGG | 0.655042 | 5_4:-62351102 | Msa0862640:CDS |
| TGGAAATGTTGTGAATTGCA+AGG | 0.663364 | 5_4:-62350947 | Msa0862640:CDS |
| TGAAGAGATTGGGAATGTGG+AGG | 0.681590 | 5_4:+62352205 | None:intergenic |
| TGCATATTAGGATACAACAA+AGG | 0.686189 | 5_4:-62351065 | Msa0862640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTATTTTAAAACTAATT+TGG | + | chr5_4:62351615-62351634 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTAAAATAAAACT+AGG | - | chr5_4:62351616-62351635 | Msa0862640:intron | 10.0% |
| !! | TGATATATATAATTCAAAAT+TGG | + | chr5_4:62351705-62351724 | None:intergenic | 10.0% |
| !!! | GTTTTATTTTAAAACTAATT+TGG | + | chr5_4:62351615-62351634 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTAAAATAAAACT+AGG | - | chr5_4:62351616-62351635 | Msa0862640:intron | 10.0% |
| !! | TGATATATATAATTCAAAAT+TGG | + | chr5_4:62351705-62351724 | None:intergenic | 10.0% |
| !! | ATATATATCATATGAATGAA+TGG | - | chr5_4:62351715-62351734 | Msa0862640:intron | 15.0% |
| !!! | AAACATAATCTTTAAAACTA+AGG | - | chr5_4:62351756-62351775 | Msa0862640:intron | 15.0% |
| !!! | TAATCTGATTTTAATATACA+TGG | - | chr5_4:62351797-62351816 | Msa0862640:intron | 15.0% |
| !! | ATATATATCATATGAATGAA+TGG | - | chr5_4:62351715-62351734 | Msa0862640:intron | 15.0% |
| !!! | AAACATAATCTTTAAAACTA+AGG | - | chr5_4:62351756-62351775 | Msa0862640:intron | 15.0% |
| !!! | TAATCTGATTTTAATATACA+TGG | - | chr5_4:62351797-62351816 | Msa0862640:intron | 15.0% |
| !!! | AATATACTCCAAGTTTTATA+TGG | - | chr5_4:62351088-62351107 | Msa0862640:CDS | 20.0% |
| !! | TATATTCACCATATAAAACT+TGG | + | chr5_4:62351099-62351118 | None:intergenic | 20.0% |
| !! | AGAAAAAAAGTTATGAAGAA+GGG | + | chr5_4:62351277-62351296 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAGTTATGAAGA+AGG | + | chr5_4:62351278-62351297 | None:intergenic | 20.0% |
| !! | ATCTAGGTTATTAGAATTAA+TGG | + | chr5_4:62351507-62351526 | None:intergenic | 20.0% |
| !!! | AATATACTCCAAGTTTTATA+TGG | - | chr5_4:62351088-62351107 | Msa0862640:CDS | 20.0% |
| !! | TATATTCACCATATAAAACT+TGG | + | chr5_4:62351099-62351118 | None:intergenic | 20.0% |
| !! | AGAAAAAAAGTTATGAAGAA+GGG | + | chr5_4:62351277-62351296 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAGTTATGAAGA+AGG | + | chr5_4:62351278-62351297 | None:intergenic | 20.0% |
| !! | ATCTAGGTTATTAGAATTAA+TGG | + | chr5_4:62351507-62351526 | None:intergenic | 20.0% |
| ! | AATATACTCCAAGTTTGATA+TGG | - | chr5_4:62350997-62351016 | Msa0862640:CDS | 25.0% |
| ! | ATATTTACAATTGTTCCACA+TGG | + | chr5_4:62351223-62351242 | None:intergenic | 25.0% |
| ! | TAAAACTAGGAATATATGAG+TGG | - | chr5_4:62351629-62351648 | Msa0862640:intron | 25.0% |
| ! | TATTCACTAATTTCAAACCT+CGG | + | chr5_4:62351674-62351693 | None:intergenic | 25.0% |
| ! | ATATCATATGAATGAATGGT+TGG | - | chr5_4:62351719-62351738 | Msa0862640:intron | 25.0% |
| ! | TCAGATTAAAACCAAATCAA+AGG | + | chr5_4:62351785-62351804 | None:intergenic | 25.0% |
| ! | ACAAAACAACACCAAAATTA+AGG | + | chr5_4:62351842-62351861 | None:intergenic | 25.0% |
| ! | AATATACTCCAAGTTTGATA+TGG | - | chr5_4:62350997-62351016 | Msa0862640:CDS | 25.0% |
| ! | ATATTTACAATTGTTCCACA+TGG | + | chr5_4:62351223-62351242 | None:intergenic | 25.0% |
| ! | TAAAACTAGGAATATATGAG+TGG | - | chr5_4:62351629-62351648 | Msa0862640:intron | 25.0% |
| ! | TATTCACTAATTTCAAACCT+CGG | + | chr5_4:62351674-62351693 | None:intergenic | 25.0% |
| ! | ATATCATATGAATGAATGGT+TGG | - | chr5_4:62351719-62351738 | Msa0862640:intron | 25.0% |
| ! | TCAGATTAAAACCAAATCAA+AGG | + | chr5_4:62351785-62351804 | None:intergenic | 25.0% |
| ! | ACAAAACAACACCAAAATTA+AGG | + | chr5_4:62351842-62351861 | None:intergenic | 25.0% |
| TAGAATCACCATATCAAACT+TGG | + | chr5_4:62351008-62351027 | None:intergenic | 30.0% | |
| AATTCAAACATAGCTCCTTA+AGG | + | chr5_4:62351200-62351219 | None:intergenic | 30.0% | |
| TGTGCAAGTTAGAAGATAAA+TGG | + | chr5_4:62351459-62351478 | None:intergenic | 30.0% | |
| ! | AATCACAAAGAAAGTGTACA+TGG | - | chr5_4:62351880-62351899 | Msa0862640:intron | 30.0% |
| ! | CAAAAGAGTATGTGCATATT+AGG | - | chr5_4:62351969-62351988 | Msa0862640:intron | 30.0% |
| TGCATATTAGGATACAACAA+AGG | - | chr5_4:62351981-62352000 | Msa0862640:intron | 30.0% | |
| ATTAGGATACAACAAAGGAA+TGG | - | chr5_4:62351986-62352005 | Msa0862640:intron | 30.0% | |
| ACTCTTTCTTGAGATCTTTA+AGG | + | chr5_4:62352069-62352088 | None:intergenic | 30.0% | |
| !!! | AAGAAAGAGTTTTGTTGCAA+TGG | - | chr5_4:62352079-62352098 | Msa0862640:intron | 30.0% |
| TAGAATCACCATATCAAACT+TGG | + | chr5_4:62351008-62351027 | None:intergenic | 30.0% | |
| AATTCAAACATAGCTCCTTA+AGG | + | chr5_4:62351200-62351219 | None:intergenic | 30.0% | |
| TGTGCAAGTTAGAAGATAAA+TGG | + | chr5_4:62351459-62351478 | None:intergenic | 30.0% | |
| ! | AATCACAAAGAAAGTGTACA+TGG | - | chr5_4:62351880-62351899 | Msa0862640:intron | 30.0% |
| ! | CAAAAGAGTATGTGCATATT+AGG | - | chr5_4:62351969-62351988 | Msa0862640:intron | 30.0% |
| TGCATATTAGGATACAACAA+AGG | - | chr5_4:62351981-62352000 | Msa0862640:intron | 30.0% | |
| ATTAGGATACAACAAAGGAA+TGG | - | chr5_4:62351986-62352005 | Msa0862640:intron | 30.0% | |
| ACTCTTTCTTGAGATCTTTA+AGG | + | chr5_4:62352069-62352088 | None:intergenic | 30.0% | |
| !!! | AAGAAAGAGTTTTGTTGCAA+TGG | - | chr5_4:62352079-62352098 | Msa0862640:intron | 30.0% |
| AGAAGAGAGTTGAAGAGATT+GGG | + | chr5_4:62350854-62350873 | None:intergenic | 35.0% | |
| TAGAAGAGAGTTGAAGAGAT+TGG | + | chr5_4:62350855-62350874 | None:intergenic | 35.0% | |
| TCTTTCCAAGTTTCGACAAT+AGG | - | chr5_4:62351150-62351169 | Msa0862640:CDS | 35.0% | |
| TTCAACCTATTGTCGAAACT+TGG | + | chr5_4:62351158-62351177 | None:intergenic | 35.0% | |
| AGTTTGAGTCTGTAACCTTA+AGG | - | chr5_4:62351182-62351201 | Msa0862640:intron | 35.0% | |
| AGCTATGTTTGAATTCCATG+TGG | - | chr5_4:62351205-62351224 | Msa0862640:intron | 35.0% | |
| AACTAAGGAGACCTTTGATT+TGG | - | chr5_4:62351771-62351790 | Msa0862640:intron | 35.0% | |
| CAAATGGATCAAATGTGCTT+GGG | + | chr5_4:62351919-62351938 | None:intergenic | 35.0% | |
| TGGAAATGTTGTGAATTGCA+AGG | - | chr5_4:62352099-62352118 | Msa0862640:intron | 35.0% | |
| AAGGACAACATCAAGATTCA+TGG | - | chr5_4:62352202-62352221 | Msa0862640:five_prime_UTR | 35.0% | |
| AGAAGAGAGTTGAAGAGATT+GGG | + | chr5_4:62350854-62350873 | None:intergenic | 35.0% | |
| TAGAAGAGAGTTGAAGAGAT+TGG | + | chr5_4:62350855-62350874 | None:intergenic | 35.0% | |
| TCTTTCCAAGTTTCGACAAT+AGG | - | chr5_4:62351150-62351169 | Msa0862640:CDS | 35.0% | |
| TTCAACCTATTGTCGAAACT+TGG | + | chr5_4:62351158-62351177 | None:intergenic | 35.0% | |
| AGTTTGAGTCTGTAACCTTA+AGG | - | chr5_4:62351182-62351201 | Msa0862640:intron | 35.0% | |
| AGCTATGTTTGAATTCCATG+TGG | - | chr5_4:62351205-62351224 | Msa0862640:intron | 35.0% | |
| AACTAAGGAGACCTTTGATT+TGG | - | chr5_4:62351771-62351790 | Msa0862640:intron | 35.0% | |
| CAAATGGATCAAATGTGCTT+GGG | + | chr5_4:62351919-62351938 | None:intergenic | 35.0% | |
| TGGAAATGTTGTGAATTGCA+AGG | - | chr5_4:62352099-62352118 | Msa0862640:intron | 35.0% | |
| AAGGACAACATCAAGATTCA+TGG | - | chr5_4:62352202-62352221 | Msa0862640:five_prime_UTR | 35.0% | |
| AGTTGAAGAGATTGGGAATG+TGG | + | chr5_4:62350847-62350866 | None:intergenic | 40.0% | |
| TATCTCTATCTGCAGACTAC+AGG | - | chr5_4:62350893-62350912 | Msa0862640:CDS | 40.0% | |
| TCTCTTGATTGCAAGGATCT+AGG | + | chr5_4:62351523-62351542 | None:intergenic | 40.0% | |
| GTGTACTTCTCTTGATTGCA+AGG | + | chr5_4:62351530-62351549 | None:intergenic | 40.0% | |
| CGATCTTCATTTAACAACCG+AGG | - | chr5_4:62351654-62351673 | Msa0862640:intron | 40.0% | |
| ATTAAGGTGCATGCATGCAT+GGG | + | chr5_4:62351826-62351845 | None:intergenic | 40.0% | |
| AATTAAGGTGCATGCATGCA+TGG | + | chr5_4:62351827-62351846 | None:intergenic | 40.0% | |
| ! | GCATGCATGCACCTTAATTT+TGG | - | chr5_4:62351828-62351847 | Msa0862640:intron | 40.0% |
| GCAAATGGATCAAATGTGCT+TGG | + | chr5_4:62351920-62351939 | None:intergenic | 40.0% | |
| ! | CACATTTGATCCATTTGCTG+AGG | - | chr5_4:62351922-62351941 | Msa0862640:intron | 40.0% |
| GATTCTTTAGCCTCAGCAAA+TGG | + | chr5_4:62351935-62351954 | None:intergenic | 40.0% | |
| GTTGTGAATTGCAAGGATCT+TGG | - | chr5_4:62352106-62352125 | Msa0862640:intron | 40.0% | |
| AGTTGAAGAGATTGGGAATG+TGG | + | chr5_4:62350847-62350866 | None:intergenic | 40.0% | |
| TATCTCTATCTGCAGACTAC+AGG | - | chr5_4:62350893-62350912 | Msa0862640:CDS | 40.0% | |
| TCTCTTGATTGCAAGGATCT+AGG | + | chr5_4:62351523-62351542 | None:intergenic | 40.0% | |
| GTGTACTTCTCTTGATTGCA+AGG | + | chr5_4:62351530-62351549 | None:intergenic | 40.0% | |
| CGATCTTCATTTAACAACCG+AGG | - | chr5_4:62351654-62351673 | Msa0862640:intron | 40.0% | |
| ATTAAGGTGCATGCATGCAT+GGG | + | chr5_4:62351826-62351845 | None:intergenic | 40.0% | |
| AATTAAGGTGCATGCATGCA+TGG | + | chr5_4:62351827-62351846 | None:intergenic | 40.0% | |
| ! | GCATGCATGCACCTTAATTT+TGG | - | chr5_4:62351828-62351847 | Msa0862640:intron | 40.0% |
| GCAAATGGATCAAATGTGCT+TGG | + | chr5_4:62351920-62351939 | None:intergenic | 40.0% | |
| ! | CACATTTGATCCATTTGCTG+AGG | - | chr5_4:62351922-62351941 | Msa0862640:intron | 40.0% |
| GATTCTTTAGCCTCAGCAAA+TGG | + | chr5_4:62351935-62351954 | None:intergenic | 40.0% | |
| GTTGTGAATTGCAAGGATCT+TGG | - | chr5_4:62352106-62352125 | Msa0862640:intron | 40.0% | |
| TGAAGAGATTGGGAATGTGG+AGG | + | chr5_4:62350844-62350863 | None:intergenic | 45.0% | |
| TTAAGGTGCATGCATGCATG+GGG | + | chr5_4:62351825-62351844 | None:intergenic | 45.0% | |
| GCTAAAGAATCAGATGCACC+AGG | - | chr5_4:62351944-62351963 | Msa0862640:intron | 45.0% | |
| ! | TGCACATACTCTTTTGCACC+TGG | + | chr5_4:62351965-62351984 | None:intergenic | 45.0% |
| AAGAGCCTAACAACAGTGCA+AGG | - | chr5_4:62352013-62352032 | Msa0862640:intron | 45.0% | |
| TCAGTCCTTGCACTGTTGTT+AGG | + | chr5_4:62352021-62352040 | None:intergenic | 45.0% | |
| AACAGTGCAAGGACTGAAGA+AGG | - | chr5_4:62352024-62352043 | Msa0862640:intron | 45.0% | |
| GGCAAGATTATCCAACTCCA+AGG | - | chr5_4:62352127-62352146 | Msa0862640:intron | 45.0% | |
| ! | CATTCTTGCGTTGATCACCT+TGG | + | chr5_4:62352147-62352166 | None:intergenic | 45.0% |
| TCTCACTTCCTCATTCATGC+TGG | - | chr5_4:62352169-62352188 | Msa0862640:five_prime_UTR | 45.0% | |
| TAGCAAGACCAGCATGAATG+AGG | + | chr5_4:62352180-62352199 | None:intergenic | 45.0% | |
| !! | TCATGCTGGTCTTGCTAGAA+AGG | - | chr5_4:62352183-62352202 | Msa0862640:five_prime_UTR | 45.0% |
| TGAAGAGATTGGGAATGTGG+AGG | + | chr5_4:62350844-62350863 | None:intergenic | 45.0% | |
| TTAAGGTGCATGCATGCATG+GGG | + | chr5_4:62351825-62351844 | None:intergenic | 45.0% | |
| GCTAAAGAATCAGATGCACC+AGG | - | chr5_4:62351944-62351963 | Msa0862640:intron | 45.0% | |
| ! | TGCACATACTCTTTTGCACC+TGG | + | chr5_4:62351965-62351984 | None:intergenic | 45.0% |
| AAGAGCCTAACAACAGTGCA+AGG | - | chr5_4:62352013-62352032 | Msa0862640:intron | 45.0% | |
| TCAGTCCTTGCACTGTTGTT+AGG | + | chr5_4:62352021-62352040 | None:intergenic | 45.0% | |
| AACAGTGCAAGGACTGAAGA+AGG | - | chr5_4:62352024-62352043 | Msa0862640:intron | 45.0% | |
| GGCAAGATTATCCAACTCCA+AGG | - | chr5_4:62352127-62352146 | Msa0862640:intron | 45.0% | |
| ! | CATTCTTGCGTTGATCACCT+TGG | + | chr5_4:62352147-62352166 | None:intergenic | 45.0% |
| TCTCACTTCCTCATTCATGC+TGG | - | chr5_4:62352169-62352188 | Msa0862640:five_prime_UTR | 45.0% | |
| TAGCAAGACCAGCATGAATG+AGG | + | chr5_4:62352180-62352199 | None:intergenic | 45.0% | |
| !! | TCATGCTGGTCTTGCTAGAA+AGG | - | chr5_4:62352183-62352202 | Msa0862640:five_prime_UTR | 45.0% |
| !!! | ATTTTAACAATTATATTTTT+TGG | - | chr5_4:62351386-62351405 | Msa0862640:intron | 5.0% |
| !!! | ATTTTAACAATTATATTTTT+TGG | - | chr5_4:62351386-62351405 | Msa0862640:intron | 5.0% |
| GAGATTGGGAATGTGGAGGT+GGG | + | chr5_4:62350840-62350859 | None:intergenic | 50.0% | |
| AGAGATTGGGAATGTGGAGG+TGG | + | chr5_4:62350841-62350860 | None:intergenic | 50.0% | |
| ! | TGCGTTGATCACCTTGGAGT+TGG | + | chr5_4:62352141-62352160 | None:intergenic | 50.0% |
| GAGATTGGGAATGTGGAGGT+GGG | + | chr5_4:62350840-62350859 | None:intergenic | 50.0% | |
| AGAGATTGGGAATGTGGAGG+TGG | + | chr5_4:62350841-62350860 | None:intergenic | 50.0% | |
| ! | TGCGTTGATCACCTTGGAGT+TGG | + | chr5_4:62352141-62352160 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 62350837 | 62352231 | 62350837 | ID=Msa0862640;Name=Msa0862640 |
| chr5_4 | mRNA | 62350837 | 62352231 | 62350837 | ID=Msa0862640-mRNA-1;Parent=Msa0862640;Name=Msa0862640-mRNA-1;_AED=0.15;_eAED=0.21;_QI=101|0|0.5|1|0|0|2|0|110 |
| chr5_4 | exon | 62350837 | 62351192 | 62350837 | ID=Msa0862640-mRNA-1:exon:19464;Parent=Msa0862640-mRNA-1 |
| chr5_4 | exon | 62352154 | 62352231 | 62352154 | ID=Msa0862640-mRNA-1:exon:19463;Parent=Msa0862640-mRNA-1 |
| chr5_4 | five_prime_UTR | 62352154 | 62352231 | 62352154 | ID=Msa0862640-mRNA-1:five_prime_utr;Parent=Msa0862640-mRNA-1 |
| chr5_4 | five_prime_UTR | 62351170 | 62351192 | 62351170 | ID=Msa0862640-mRNA-1:five_prime_utr;Parent=Msa0862640-mRNA-1 |
| chr5_4 | CDS | 62350837 | 62351169 | 62350837 | ID=Msa0862640-mRNA-1:cds;Parent=Msa0862640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
