Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825150 | XP_003617845.1 | 97.907 | 430 | 9 | 0 | 1 | 430 | 1 | 430 | 0.0 | 881 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825150 | sp|Q6BPT6|AIM32_DEBHA | 43.000 | 100 | 53 | 2 | 189 | 288 | 178 | 273 | 3.01e-17 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825150 | G7KEI3 | 97.907 | 430 | 9 | 0 | 1 | 430 | 1 | 430 | 0.0 | 881 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078650 | Msa0825150 | 0.809552 | 1.788057e-50 | -8.615850e-47 |
| Msa0658240 | Msa0825150 | 0.807103 | 5.952648e-50 | -8.615850e-47 |
| Msa0825150 | Msa0982600 | 0.804687 | 1.916491e-49 | -8.615850e-47 |
| Msa0825150 | Msa1063950 | 0.806097 | 9.707699e-50 | -8.615850e-47 |
| Msa0825150 | Msa1151910 | 0.806773 | 6.990333e-50 | -8.615850e-47 |
| Msa0825150 | Msa1306690 | 0.808443 | 3.089630e-50 | -8.615850e-47 |
| Msa0126370 | Msa0825150 | 0.800256 | 1.569264e-48 | -8.615850e-47 |
| Msa0200260 | Msa0825150 | 0.807515 | 4.867959e-50 | -8.615850e-47 |
| Msa0222700 | Msa0825150 | 0.800922 | 1.147975e-48 | -8.615850e-47 |
| Msa0264040 | Msa0825150 | 0.816185 | 6.300316e-52 | -8.615850e-47 |
| Msa0302000 | Msa0825150 | 0.800358 | 1.496258e-48 | -8.615850e-47 |
| Msa0339320 | Msa0825150 | 0.807037 | 6.145707e-50 | -8.615850e-47 |
| Msa0576880 | Msa0825150 | 0.812598 | 3.911781e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825150 | MtrunA17_Chr5g0446741 | 97.907 | 430 | 9 | 0 | 1 | 430 | 1 | 430 | 0.0 | 881 |
| Msa0825150 | MtrunA17_Chr3g0078811 | 99.298 | 285 | 2 | 0 | 1 | 285 | 1 | 285 | 0.0 | 598 |
| Msa0825150 | MtrunA17_Chr7g0227301 | 49.828 | 291 | 137 | 3 | 55 | 336 | 2 | 292 | 1.20e-99 | 301 |
| Msa0825150 | MtrunA17_Chr6g0449451 | 47.386 | 306 | 151 | 4 | 60 | 359 | 44 | 345 | 5.46e-96 | 293 |
| Msa0825150 | MtrunA17_Chr3g0078821 | 93.706 | 143 | 9 | 0 | 288 | 430 | 1 | 143 | 1.71e-81 | 247 |
| Msa0825150 | MtrunA17_Chr6g0449431 | 36.957 | 184 | 93 | 4 | 155 | 335 | 19 | 182 | 1.48e-29 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825150 | AT4G26620.1 | 64.286 | 448 | 126 | 11 | 7 | 429 | 5 | 443 | 0.0 | 526 |
| Msa0825150 | AT5G55900.1 | 58.411 | 428 | 153 | 9 | 7 | 429 | 5 | 412 | 1.18e-149 | 431 |
| Msa0825150 | AT5G55900.2 | 61.489 | 309 | 104 | 5 | 126 | 429 | 10 | 308 | 2.42e-113 | 335 |
| Msa0825150 | AT3G27570.2 | 50.877 | 285 | 126 | 7 | 60 | 339 | 17 | 292 | 7.86e-88 | 271 |
| Msa0825150 | AT3G27570.1 | 50.877 | 285 | 126 | 7 | 60 | 339 | 56 | 331 | 3.06e-87 | 271 |
| Msa0825150 | AT5G40510.1 | 39.353 | 371 | 169 | 7 | 60 | 428 | 15 | 331 | 3.19e-87 | 269 |
| Msa0825150 | AT5G40510.2 | 39.353 | 371 | 169 | 7 | 60 | 428 | 51 | 367 | 2.00e-86 | 268 |
Find 125 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACGAACCTTTCAAACTTTC+AGG | 0.135608 | 5_3:-64894485 | None:intergenic |
| GCAGGAAATGTCATTATATT+TGG | 0.179898 | 5_3:+64894659 | Msa0825150:CDS |
| TGTCTGTGTTATTATTATTT+AGG | 0.215354 | 5_3:+64896765 | Msa0825150:three_prime_UTR |
| GCTTTACAATAAATTGAAAA+AGG | 0.281043 | 5_3:-64897060 | None:intergenic |
| TTAGCCCGTGCTCGCACATT+GGG | 0.302143 | 5_3:+64894624 | Msa0825150:CDS |
| GTTATAAGAATCCCAGGTTT+TGG | 0.304851 | 5_3:+64892756 | Msa0825150:CDS |
| TGGGGTTTGTGGACCTGTTT+TGG | 0.325042 | 5_3:+64894547 | Msa0825150:CDS |
| GGGAGATTATAGACTCATTA+TGG | 0.327019 | 5_3:+64894912 | Msa0825150:CDS |
| AAACTTCCAGAAGCGCTTCT+TGG | 0.342260 | 5_3:-64892608 | None:intergenic |
| GTGAGCTGCTGCCAAGAAAA+TGG | 0.344854 | 5_3:+64896455 | Msa0825150:CDS |
| GATGTTGCTGATGTTGAGTT+TGG | 0.346397 | 5_3:+64892659 | Msa0825150:CDS |
| TTTGTTTGAGAGAGTGAAAA+TGG | 0.346843 | 5_3:-64892466 | None:intergenic |
| GACCCTCACATATCGTTAAC+CGG | 0.349668 | 5_3:-64894243 | None:intergenic |
| GAAGTATTTATAAGTTTGTT+CGG | 0.354038 | 5_3:+64897019 | Msa0825150:three_prime_UTR |
| AGACTGTGTTCCTGTGCTAT+AGG | 0.354525 | 5_3:-64892353 | None:intergenic |
| ATGAAAGAACACCATCGTTC+TGG | 0.355681 | 5_3:-64892631 | None:intergenic |
| TGGCAGCAGCTCACTCCATT+TGG | 0.355874 | 5_3:-64896446 | None:intergenic |
| GCTAATTAATCCAAGATTTG+AGG | 0.369083 | 5_3:+64897102 | Msa0825150:three_prime_UTR |
| TTCAATTTATTGTAAAGCTT+TGG | 0.369959 | 5_3:+64897065 | Msa0825150:three_prime_UTR |
| AACGATGGTGTTCTTTCATC+TGG | 0.374524 | 5_3:+64892635 | Msa0825150:CDS |
| ACCGACCCAAGAAGCGCTTC+TGG | 0.375953 | 5_3:+64892602 | Msa0825150:CDS |
| TTCAAACTTTCAGGTGTTCC+AGG | 0.376030 | 5_3:-64894476 | None:intergenic |
| AACTTCCAGAAGCGCTTCTT+GGG | 0.394619 | 5_3:-64892607 | None:intergenic |
| CTGAATCTATTAACCAAAAC+AGG | 0.401968 | 5_3:-64894560 | None:intergenic |
| GACTGTGTTCCTGTGCTATA+GGG | 0.404200 | 5_3:-64892352 | None:intergenic |
| AGAGAGCTTTGTCGAAAATC+AGG | 0.413859 | 5_3:-64892692 | None:intergenic |
| TATGTACAGATTAAGCTAAT+AGG | 0.416181 | 5_3:-64896972 | None:intergenic |
| ATGGGACTGAAACATCTAAT+GGG | 0.417414 | 5_3:+64894269 | Msa0825150:CDS |
| CTCTCTCAAACAAACAATGA+TGG | 0.423112 | 5_3:+64892475 | Msa0825150:exon |
| GACAGCATGGCTTGACGGCT+GGG | 0.426281 | 5_3:+64896640 | Msa0825150:CDS |
| AAGTATTTATAAGTTTGTTC+GGG | 0.434313 | 5_3:+64897020 | Msa0825150:three_prime_UTR |
| CGACAGCATGGCTTGACGGC+TGG | 0.436679 | 5_3:+64896639 | Msa0825150:CDS |
| TGGATTAATTAGCAAGTTTG+AGG | 0.438223 | 5_3:-64897092 | None:intergenic |
| TGATGGGATTGTGAATGTTA+AGG | 0.442781 | 5_3:-64892525 | None:intergenic |
| TTTCGACAAAGCTCTCTTGT+TGG | 0.444976 | 5_3:+64892698 | Msa0825150:CDS |
| GATGGGACTGAAACATCTAA+TGG | 0.445628 | 5_3:+64894268 | Msa0825150:CDS |
| TTCCTGACATGATCAGATAC+AGG | 0.459679 | 5_3:+64894305 | Msa0825150:CDS |
| AGCAATAACGGTACATCCTC+CGG | 0.464324 | 5_3:-64894869 | None:intergenic |
| GATGGGATTGTGAATGTTAA+GGG | 0.464399 | 5_3:-64892524 | None:intergenic |
| CTGAGTTTGATCGCTTGCCT+AGG | 0.469513 | 5_3:+64892798 | Msa0825150:CDS |
| AACTCAGCAGCTTCAATCCT+AGG | 0.469774 | 5_3:-64892782 | None:intergenic |
| CTAGAGATCCATTCAGTACA+GGG | 0.475454 | 5_3:-64896400 | None:intergenic |
| ATATTTGGATCAAGCATGAA+TGG | 0.478059 | 5_3:+64894674 | Msa0825150:CDS |
| TTCAACAACATATCATGAAA+GGG | 0.478501 | 5_3:+64894891 | Msa0825150:CDS |
| GTTAGCCCGTGCTCGCACAT+TGG | 0.479526 | 5_3:+64894623 | Msa0825150:CDS |
| TCTAGAGATCCATTCAGTAC+AGG | 0.481178 | 5_3:-64896401 | None:intergenic |
| AAGAATGGAGAGTGGCTACC+TGG | 0.483034 | 5_3:+64894458 | Msa0825150:CDS |
| AGCAGCTCACTCCATTTGGT+TGG | 0.483781 | 5_3:-64896442 | None:intergenic |
| GGCTTCTGCTGAGTTGCATA+GGG | 0.483816 | 5_3:+64896363 | Msa0825150:CDS |
| AGGCTTCTGCTGAGTTGCAT+AGG | 0.487626 | 5_3:+64896362 | Msa0825150:CDS |
| GAAGAAAACCCTGTACTGAA+TGG | 0.488090 | 5_3:+64896392 | Msa0825150:CDS |
| GATCGCAGATGTGGGGTTTG+TGG | 0.489205 | 5_3:+64894536 | Msa0825150:CDS |
| GAAGAAGTTCTTGTGAAGAA+TGG | 0.491498 | 5_3:+64894443 | Msa0825150:CDS |
| AACCTGTATCTGATCATGTC+AGG | 0.492493 | 5_3:-64894307 | None:intergenic |
| TGTTGTCTGTGCTGCTGTAT+CGG | 0.492568 | 5_3:+64896691 | Msa0825150:CDS |
| TACTTCATATCCTGAGGCTA+AGG | 0.493024 | 5_3:-64897002 | None:intergenic |
| TATTTCCATCAGGGGTCAGA+TGG | 0.493546 | 5_3:+64896301 | Msa0825150:intron |
| TGTGTGTGCACCTCAAATCT+TGG | 0.496495 | 5_3:-64897112 | None:intergenic |
| TTCTTTGTTATAAGAATCCC+AGG | 0.497646 | 5_3:+64892750 | Msa0825150:CDS |
| ACGAGCTGCTGCCAACCAAA+TGG | 0.500882 | 5_3:+64896431 | Msa0825150:CDS |
| TCTCGAATCAACAGCGGGAA+AGG | 0.505074 | 5_3:+64896593 | Msa0825150:CDS |
| GGGTTTGATGATGTTGTTGT+TGG | 0.507283 | 5_3:-64892384 | None:intergenic |
| CTTCAACAACATATCATGAA+AGG | 0.512393 | 5_3:+64894890 | Msa0825150:CDS |
| TTGGACATGCAGGGAACGAA+TGG | 0.519742 | 5_3:+64896872 | Msa0825150:intron |
| TGACGCCTGACTCTGACAAA+AGG | 0.522283 | 5_3:-64896486 | None:intergenic |
| ACGATATGTGAGGGTCATGA+TGG | 0.524712 | 5_3:+64894250 | Msa0825150:CDS |
| TCCAGAAGCGCTTCTTGGGT+CGG | 0.528657 | 5_3:-64892603 | None:intergenic |
| GGATCACGTGATCGCAGATG+TGG | 0.533389 | 5_3:+64894527 | Msa0825150:CDS |
| ATATGTTGTTGAAGCAATAA+CGG | 0.533696 | 5_3:-64894881 | None:intergenic |
| TAGGAAGAATCATATGAAGA+AGG | 0.535864 | 5_3:+64892844 | Msa0825150:CDS |
| ATCAGCTGAAAGCTTTGCCT+CGG | 0.537129 | 5_3:-64896543 | None:intergenic |
| ATAGAGTATCATGGTCTACA+AGG | 0.540083 | 5_3:+64894590 | Msa0825150:CDS |
| AATCCTAGGAGGCCAAAACC+TGG | 0.541943 | 5_3:-64892768 | None:intergenic |
| CAGGTATGGATATGTTGCTC+CGG | 0.547551 | 5_3:+64894850 | Msa0825150:intron |
| TTTATGCTGCTGTTAAAGCT+AGG | 0.548804 | 5_3:+64892825 | Msa0825150:CDS |
| TCTCTCAAACAAACAATGAT+GGG | 0.550896 | 5_3:+64892476 | Msa0825150:exon |
| ATATAAGAAACCTTAGCCTC+AGG | 0.553594 | 5_3:+64896992 | Msa0825150:three_prime_UTR |
| GGTGATTGGTGAGGAATGAG+AGG | 0.553624 | 5_3:-64892552 | None:intergenic |
| GAGGAATGAGAGGAAGATGA+TGG | 0.557349 | 5_3:-64892542 | None:intergenic |
| AGGAATGAGAGGAAGATGAT+GGG | 0.558309 | 5_3:-64892541 | None:intergenic |
| TGGACATGCAGGGAACGAAT+GGG | 0.564164 | 5_3:+64896873 | Msa0825150:intron |
| TCTACGACAGCATGGCTTGA+CGG | 0.564994 | 5_3:+64896635 | Msa0825150:CDS |
| TAGCCCGTGCTCGCACATTG+GGG | 0.565186 | 5_3:+64894625 | Msa0825150:CDS |
| GCGGGAAAGGAGCTTCATGC+AGG | 0.566698 | 5_3:+64896606 | Msa0825150:CDS |
| ATTTCCATCAGGGGTCAGAT+GGG | 0.569080 | 5_3:+64896302 | Msa0825150:intron |
| AGTGTGTCAGAGACGGTGAT+TGG | 0.569202 | 5_3:-64892566 | None:intergenic |
| TATCATAGTCCCTATAGCAC+AGG | 0.569295 | 5_3:+64892343 | None:intergenic |
| GATCACGTGATCGCAGATGT+GGG | 0.572702 | 5_3:+64894528 | Msa0825150:CDS |
| GGAACACCTGAAAGTTTGAA+AGG | 0.573138 | 5_3:+64894479 | Msa0825150:CDS |
| CTGCTACAAACAATTGACAT+AGG | 0.580547 | 5_3:+64896730 | Msa0825150:CDS |
| CGGTTTCTCGAATCAACAGC+GGG | 0.584126 | 5_3:+64896588 | Msa0825150:CDS |
| TTGTCAGAGTCAGGCGTCAG+TGG | 0.586534 | 5_3:+64896490 | Msa0825150:CDS |
| AGCCCGTGCTCGCACATTGG+GGG | 0.586972 | 5_3:+64894626 | Msa0825150:CDS |
| TAATAAGATCAGCAAGGCGG+CGG | 0.589393 | 5_3:+64896568 | Msa0825150:CDS |
| AGGGAAGAAATAGAGTATCA+TGG | 0.590070 | 5_3:+64894581 | Msa0825150:CDS |
| CGATATGTGAGGGTCATGAT+GGG | 0.591587 | 5_3:+64894251 | Msa0825150:CDS |
| ATCCTAGGAGGCCAAAACCT+GGG | 0.598991 | 5_3:-64892767 | None:intergenic |
| CTACAAACAATTGACATAGG+AGG | 0.601210 | 5_3:+64896733 | Msa0825150:exon |
| ACAGCAGCATAAAGCAACCT+AGG | 0.605995 | 5_3:-64892815 | None:intergenic |
| GAAGAATCATATGAAGAAGG+AGG | 0.606834 | 5_3:+64892847 | Msa0825150:CDS |
| ACCCTCACATATCGTTAACC+GGG | 0.613685 | 5_3:-64894242 | None:intergenic |
| TATAAATACTTCATATCCTG+AGG | 0.620891 | 5_3:-64897008 | None:intergenic |
| GGTCTCGATCTACGACAGCA+TGG | 0.627098 | 5_3:+64896627 | Msa0825150:CDS |
| GTATGGATATGTTGCTCCGG+AGG | 0.628869 | 5_3:+64894853 | Msa0825150:CDS |
| TCTGGAAGTTTCCAGAACGA+TGG | 0.633045 | 5_3:+64892620 | Msa0825150:CDS |
| AGCATGAATGGAGAAGTCAC+TGG | 0.635287 | 5_3:+64894686 | Msa0825150:CDS |
| CTCCGATGTCATCGAGACCG+AGG | 0.640492 | 5_3:+64896526 | Msa0825150:CDS |
| TCAACAACATATCATGAAAG+GGG | 0.643501 | 5_3:+64894892 | Msa0825150:CDS |
| GACCCGGTTAACGATATGTG+AGG | 0.656105 | 5_3:+64894240 | Msa0825150:intron |
| ATGGAGAAGTCACTGGACAC+TGG | 0.656231 | 5_3:+64894693 | Msa0825150:CDS |
| AAGCGCTTCTTGGGTCGGTG+AGG | 0.656522 | 5_3:-64892598 | None:intergenic |
| TTCTTGTGAAGAATGGAGAG+TGG | 0.662950 | 5_3:+64894450 | Msa0825150:CDS |
| ATCACGTGATCGCAGATGTG+GGG | 0.664665 | 5_3:+64894529 | Msa0825150:CDS |
| TCAGCAGCTTCAATCCTAGG+AGG | 0.668429 | 5_3:-64892779 | None:intergenic |
| TGCCTCGGTCTCGATGACAT+CGG | 0.669399 | 5_3:-64896528 | None:intergenic |
| AAATACAAAAGCAAGAACAA+AGG | 0.675736 | 5_3:+64896342 | Msa0825150:CDS |
| ACTATCGAGTGTGTCAGAGA+CGG | 0.678977 | 5_3:-64892573 | None:intergenic |
| TGATAATAATAAGATCAGCA+AGG | 0.682577 | 5_3:+64896562 | Msa0825150:CDS |
| AGATTATAGACTCATTATGG+AGG | 0.687669 | 5_3:+64894915 | Msa0825150:CDS |
| GCTTCTGCTGAGTTGCATAG+GGG | 0.693692 | 5_3:+64896364 | Msa0825150:CDS |
| ACCCGGTTAACGATATGTGA+GGG | 0.693772 | 5_3:+64894241 | Msa0825150:CDS |
| GTCAGAGACGGTGATTGGTG+AGG | 0.699707 | 5_3:-64892561 | None:intergenic |
| GCGGTTTCTCGAATCAACAG+CGG | 0.724966 | 5_3:+64896587 | Msa0825150:CDS |
| TGGGACTGAAACATCTAATG+GGG | 0.726326 | 5_3:+64894270 | Msa0825150:CDS |
| TAATAATAAGATCAGCAAGG+CGG | 0.744569 | 5_3:+64896565 | Msa0825150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTAACTTTTTAATTTTA+AGG | + | chr5_3:64893066-64893085 | Msa0825150:intron | 10.0% |
| !!! | TTTTGGTTTATATTTTTTTT+TGG | + | chr5_3:64893429-64893448 | Msa0825150:intron | 10.0% |
| !!! | TAGTTTTAGTTATATTAATA+CGG | + | chr5_3:64895044-64895063 | Msa0825150:intron | 10.0% |
| !!! | TAAAAGTATTGTAATTTTAT+TGG | - | chr5_3:64895843-64895862 | None:intergenic | 10.0% |
| !!! | TTGTAAAAATTTAAGCTTTT+GGG | + | chr5_3:64892972-64892991 | Msa0825150:intron | 15.0% |
| !!! | TAATTGTTTTGTGATTTTTT+GGG | + | chr5_3:64893139-64893158 | Msa0825150:intron | 15.0% |
| !!! | GTGATTTTTAGATTATTTAT+TGG | + | chr5_3:64893761-64893780 | Msa0825150:intron | 15.0% |
| !!! | TTGTAAAAAATTAAGCTTTT+GGG | + | chr5_3:64893792-64893811 | Msa0825150:intron | 15.0% |
| !!! | TTGTAAAAATTTAAGCTTTT+GGG | + | chr5_3:64892972-64892991 | Msa0825150:intron | 15.0% |
| !! | ATATCAGTTGAATATAATAT+AGG | - | chr5_3:64894827-64894846 | None:intergenic | 15.0% |
| !! | GTTCATAATTCATTTAATAA+GGG | + | chr5_3:64895213-64895232 | Msa0825150:intron | 15.0% |
| !!! | CAAATATTTTCTAAAACTTA+AGG | - | chr5_3:64895244-64895263 | None:intergenic | 15.0% |
| !! | AAAATATTTGCATTTCAAAA+AGG | + | chr5_3:64895254-64895273 | Msa0825150:intron | 15.0% |
| !! | AAATATTTGCATTTCAAAAA+GGG | + | chr5_3:64895255-64895274 | Msa0825150:intron | 15.0% |
| !!! | ATGTTTTTTTTAATCTGAAT+TGG | + | chr5_3:64895329-64895348 | Msa0825150:intron | 15.0% |
| !! | ACAATTTCAATTTGAAAATA+TGG | - | chr5_3:64895385-64895404 | None:intergenic | 15.0% |
| !!! | TTCATAACTTGAATTATTTT+TGG | - | chr5_3:64895919-64895938 | None:intergenic | 15.0% |
| !! | ATACATATTAAGCAATATAT+TGG | - | chr5_3:64896201-64896220 | None:intergenic | 15.0% |
| !! | TATATTGCTTAATATGTATT+TGG | + | chr5_3:64896202-64896221 | Msa0825150:intron | 15.0% |
| !! | ATATTGCTTAATATGTATTT+GGG | + | chr5_3:64896203-64896222 | Msa0825150:intron | 15.0% |
| !! | TAATTGTGGAATATTATTAT+TGG | + | chr5_3:64896930-64896949 | Msa0825150:intron | 15.0% |
| !!! | GTTGTAAAAATTTAAGCTTT+TGG | + | chr5_3:64892971-64892990 | Msa0825150:intron | 20.0% |
| !!! | CTAATTGTTTTGTGATTTTT+TGG | + | chr5_3:64893138-64893157 | Msa0825150:intron | 20.0% |
| !!! | GTTGTAAAAATTTAAGCTTT+TGG | + | chr5_3:64892971-64892990 | Msa0825150:intron | 20.0% |
| !! | ATAAATGAATGATATTAGTG+AGG | + | chr5_3:64893273-64893292 | Msa0825150:intron | 20.0% |
| !!! | TTGTAAAAAAACTAAGCTTT+TGG | + | chr5_3:64893412-64893431 | Msa0825150:intron | 20.0% |
| !!! | TTGTAAAAATTCAAGCTTTT+TGG | + | chr5_3:64893603-64893622 | Msa0825150:intron | 20.0% |
| !!! | CTTGTAAAAAATTAAGCTTT+TGG | + | chr5_3:64893791-64893810 | Msa0825150:intron | 20.0% |
| !!! | CTTGTAAAAATTTAAGCTTT+TGG | + | chr5_3:64894030-64894049 | Msa0825150:intron | 20.0% |
| !! | AATATTTGATTCATTTGTGA+AGG | + | chr5_3:64894349-64894368 | Msa0825150:intron | 20.0% |
| !! | ATAATCAATATGGTAAACAA+CGG | - | chr5_3:64894796-64894815 | None:intergenic | 20.0% |
| !! | TCATAATTCTTTATGTTATC+AGG | + | chr5_3:64894948-64894967 | Msa0825150:intron | 20.0% |
| !! | GGTTCATAATTCATTTAATA+AGG | + | chr5_3:64895212-64895231 | Msa0825150:intron | 20.0% |
| !! | TCATTCTCTCAAATTATTAT+TGG | + | chr5_3:64895602-64895621 | Msa0825150:intron | 20.0% |
| !! | AAGATTACAATTCAGAAAAT+AGG | - | chr5_3:64895797-64895816 | None:intergenic | 20.0% |
| !! | TGAGATATATCATAATGAAT+TGG | + | chr5_3:64896052-64896071 | Msa0825150:intron | 20.0% |
| !! | GAGATATATCATAATGAATT+GGG | + | chr5_3:64896053-64896072 | Msa0825150:intron | 20.0% |
| !!! | TTATGAATCAGATTTAAGAT+AGG | + | chr5_3:64896096-64896115 | Msa0825150:intron | 20.0% |
| !!! | TGTCTGTGTTATTATTATTT+AGG | + | chr5_3:64896765-64896784 | Msa0825150:three_prime_UTR | 20.0% |
| !!! | TTATTTTGACCAATCATTAT+TGG | + | chr5_3:64896853-64896872 | Msa0825150:intron | 20.0% |
| !!! | GAAGTATTTATAAGTTTGTT+CGG | + | chr5_3:64897019-64897038 | Msa0825150:three_prime_UTR | 20.0% |
| !!! | AAGTATTTATAAGTTTGTTC+GGG | + | chr5_3:64897020-64897039 | Msa0825150:three_prime_UTR | 20.0% |
| !! | GCTTTACAATAAATTGAAAA+AGG | - | chr5_3:64897063-64897082 | None:intergenic | 20.0% |
| !! | TTCAATTTATTGTAAAGCTT+TGG | + | chr5_3:64897065-64897084 | Msa0825150:three_prime_UTR | 20.0% |
| ! | ATGAATCATGAATGAATGAA+TGG | + | chr5_3:64893016-64893035 | Msa0825150:intron | 25.0% |
| !! | TGATTTTCTTTGTGAGTTTA+TGG | + | chr5_3:64893370-64893389 | Msa0825150:intron | 25.0% |
| ! | TAATCCACTTGAAATTAATG+AGG | + | chr5_3:64893470-64893489 | Msa0825150:intron | 25.0% |
| ! | AAAACCTCATTAATTTCAAG+TGG | - | chr5_3:64893477-64893496 | None:intergenic | 25.0% |
| !!! | CTTTTGAGTTAAGAACTATA+TGG | + | chr5_3:64893499-64893518 | Msa0825150:intron | 25.0% |
| ! | TTATGAATGAATGATACACT+TGG | + | chr5_3:64893650-64893669 | Msa0825150:intron | 25.0% |
| !! | TTTTCACAACACATTCAATT+AGG | - | chr5_3:64893725-64893744 | None:intergenic | 25.0% |
| !!! | GTGCTAATTGATTTTTTACA+AGG | + | chr5_3:64893975-64893994 | Msa0825150:intron | 25.0% |
| !!! | TGATTTTTTACAAGGTTATG+TGG | + | chr5_3:64893983-64894002 | Msa0825150:intron | 25.0% |
| ! | TTGATTGTATTGTGAAAATG+TGG | + | chr5_3:64894170-64894189 | Msa0825150:intron | 25.0% |
| ! | TTGACTGCAAAATGTTAATA+TGG | + | chr5_3:64894383-64894402 | Msa0825150:intron | 25.0% |
| !!! | TGTTTTGGTTAATAGATTCA+GGG | + | chr5_3:64894562-64894581 | Msa0825150:CDS | 25.0% |
| ! | TATATTCAACTGATATAACC+AGG | + | chr5_3:64894831-64894850 | Msa0825150:intron | 25.0% |
| ! | ATATGTTGTTGAAGCAATAA+CGG | - | chr5_3:64894884-64894903 | None:intergenic | 25.0% |
| ! | TTCAACAACATATCATGAAA+GGG | + | chr5_3:64894891-64894910 | Msa0825150:CDS | 25.0% |
| ! | AAATATCCATAAGTCAACTT+TGG | + | chr5_3:64895356-64895375 | Msa0825150:intron | 25.0% |
| ! | TTCAAATTGAAATTGTGTTC+AGG | + | chr5_3:64895389-64895408 | Msa0825150:intron | 25.0% |
| ! | TCAAGACTCAAATTGTAATT+CGG | + | chr5_3:64895767-64895786 | Msa0825150:intron | 25.0% |
| ! | TCAAATGTCAAAAGAAAAGT+AGG | + | chr5_3:64895939-64895958 | Msa0825150:intron | 25.0% |
| ! | TACAAAGTTGTCAAAAAATG+TGG | + | chr5_3:64895968-64895987 | Msa0825150:intron | 25.0% |
| ! | TTCTTTGAATATTTCCATCA+GGG | + | chr5_3:64896292-64896311 | Msa0825150:intron | 25.0% |
| ! | AAATACAAAAGCAAGAACAA+AGG | + | chr5_3:64896342-64896361 | Msa0825150:CDS | 25.0% |
| ! | TGATAATAATAAGATCAGCA+AGG | + | chr5_3:64896562-64896581 | Msa0825150:CDS | 25.0% |
| !! | TGGAATATTATTATTGGCTA+TGG | + | chr5_3:64896936-64896955 | Msa0825150:intron | 25.0% |
| ! | TATGTACAGATTAAGCTAAT+AGG | - | chr5_3:64896975-64896994 | None:intergenic | 25.0% |
| ! | TATAAATACTTCATATCCTG+AGG | - | chr5_3:64897011-64897030 | None:intergenic | 25.0% |
| ! | TTTTTCTGTTACTGTTTCGA+GGG | - | chr5_3:64892408-64892427 | None:intergenic | 30.0% |
| !!! | TTTTTTCTGTTACTGTTTCG+AGG | - | chr5_3:64892409-64892428 | None:intergenic | 30.0% |
| TTTGTTTGAGAGAGTGAAAA+TGG | - | chr5_3:64892469-64892488 | None:intergenic | 30.0% | |
| TCTCTCAAACAAACAATGAT+GGG | + | chr5_3:64892476-64892495 | Msa0825150:exon | 30.0% | |
| ! | TTCTTTGTTATAAGAATCCC+AGG | + | chr5_3:64892750-64892769 | Msa0825150:CDS | 30.0% |
| TAGGAAGAATCATATGAAGA+AGG | + | chr5_3:64892844-64892863 | Msa0825150:CDS | 30.0% | |
| !!! | GTGTTGATTTTGTGACTTTT+TGG | + | chr5_3:64892930-64892949 | Msa0825150:intron | 30.0% |
| ! | TTGATTTTGTGACTTTTTGG+TGG | + | chr5_3:64892933-64892952 | Msa0825150:intron | 30.0% |
| !!! | AATTTAAGCTTTTGGGTTGT+TGG | + | chr5_3:64892979-64892998 | Msa0825150:intron | 30.0% |
| ! | TGAATGAATGGAAGTATGAT+AGG | + | chr5_3:64893028-64893047 | Msa0825150:intron | 30.0% |
| ! | AAGTATGATAGGTTTGAAGT+TGG | + | chr5_3:64893039-64893058 | Msa0825150:intron | 30.0% |
| !!! | TGTGATTTTTTGGGTGTTTA+TGG | + | chr5_3:64893148-64893167 | Msa0825150:intron | 30.0% |
| !!! | TTTTGAGTTGTTTGCTTTGT+GGG | + | chr5_3:64893240-64893259 | Msa0825150:intron | 30.0% |
| GATGTGAAATTAATGCTAGT+TGG | + | chr5_3:64893316-64893335 | Msa0825150:intron | 30.0% | |
| !!! | TTTTTGGTTGTTTGTTTTGC+AGG | + | chr5_3:64893619-64893638 | Msa0825150:intron | 30.0% |
| !!! | TTTTGGTTGTTTGTTTTGCA+GGG | + | chr5_3:64893620-64893639 | Msa0825150:intron | 30.0% |
| !!! | TTTTGGGTTGTTTGTTTTGT+AGG | + | chr5_3:64893808-64893827 | Msa0825150:intron | 30.0% |
| !!! | TTTGGGTTGTTTGTTTTGTA+GGG | + | chr5_3:64893809-64893828 | Msa0825150:intron | 30.0% |
| TAATCCACTTGAAATTTGTG+AGG | + | chr5_3:64893857-64893876 | Msa0825150:intron | 30.0% | |
| TTTACAAGGTTATGTGGTTA+TGG | + | chr5_3:64893989-64894008 | Msa0825150:intron | 30.0% | |
| !!! | AGCTTTTGGGTTAAATATTG+TGG | + | chr5_3:64894044-64894063 | Msa0825150:intron | 30.0% |
| !!! | GCTTTTGGGTTAAATATTGT+GGG | + | chr5_3:64894045-64894064 | Msa0825150:intron | 30.0% |
| !!! | CTTTTGGGTTAAATATTGTG+GGG | + | chr5_3:64894046-64894065 | Msa0825150:intron | 30.0% |
| GAATGATCCACTTAAATTGT+TGG | + | chr5_3:64894080-64894099 | Msa0825150:intron | 30.0% | |
| !! | GAAAATGTGGCAATTGATTT+TGG | + | chr5_3:64894183-64894202 | Msa0825150:intron | 30.0% |
| !! | TATGTTTTTGTGTGTTCACA+TGG | + | chr5_3:64894506-64894525 | Msa0825150:CDS | 30.0% |
| CTGAATCTATTAACCAAAAC+AGG | - | chr5_3:64894563-64894582 | None:intergenic | 30.0% | |
| !!! | CTGTTTTGGTTAATAGATTC+AGG | + | chr5_3:64894561-64894580 | Msa0825150:CDS | 30.0% |
| GCAGGAAATGTCATTATATT+TGG | + | chr5_3:64894659-64894678 | Msa0825150:CDS | 30.0% | |
| ATATTTGGATCAAGCATGAA+TGG | + | chr5_3:64894674-64894693 | Msa0825150:CDS | 30.0% | |
| GGTCAGACAAATAATCAATA+TGG | - | chr5_3:64894806-64894825 | None:intergenic | 30.0% | |
| CTTCAACAACATATCATGAA+AGG | + | chr5_3:64894890-64894909 | Msa0825150:CDS | 30.0% | |
| TCAACAACATATCATGAAAG+GGG | + | chr5_3:64894892-64894911 | Msa0825150:CDS | 30.0% | |
| AGATTATAGACTCATTATGG+AGG | + | chr5_3:64894915-64894934 | Msa0825150:CDS | 30.0% | |
| !! | GAAGTTCTGAAGAAAATGAA+AGG | + | chr5_3:64895096-64895115 | Msa0825150:intron | 30.0% |
| CAAACAAGTAGCAGTAAAAA+GGG | - | chr5_3:64895305-64895324 | None:intergenic | 30.0% | |
| TCAAACAAGTAGCAGTAAAA+AGG | - | chr5_3:64895306-64895325 | None:intergenic | 30.0% | |
| ATTGCCAACAAAAAAACTTG+CGG | - | chr5_3:64895493-64895512 | None:intergenic | 30.0% | |
| ATCAATGTAATCCTATGTGT+CGG | - | chr5_3:64895577-64895596 | None:intergenic | 30.0% | |
| ATTACATGTTATCCTCTTCA+AGG | + | chr5_3:64895689-64895708 | Msa0825150:intron | 30.0% | |
| TTACATGTTATCCTCTTCAA+GGG | + | chr5_3:64895690-64895709 | Msa0825150:intron | 30.0% | |
| CTTAAATTAATCCCTTGAAG+AGG | - | chr5_3:64895704-64895723 | None:intergenic | 30.0% | |
| CAAGACTCAAATTGTAATTC+GGG | + | chr5_3:64895768-64895787 | Msa0825150:intron | 30.0% | |
| AAGTTGTCAAAAAATGTGGT+TGG | + | chr5_3:64895972-64895991 | Msa0825150:intron | 30.0% | |
| AATGAATCACTACCTAAACT+TGG | - | chr5_3:64896003-64896022 | None:intergenic | 30.0% | |
| TAATGAATTGGGATTGTGAT+TGG | + | chr5_3:64896064-64896083 | Msa0825150:intron | 30.0% | |
| AATGAATTGGGATTGTGATT+GGG | + | chr5_3:64896065-64896084 | Msa0825150:intron | 30.0% | |
| CTTCTTTGAATATTTCCATC+AGG | + | chr5_3:64896291-64896310 | Msa0825150:intron | 30.0% | |
| TCTTTGAATATTTCCATCAG+GGG | + | chr5_3:64896293-64896312 | Msa0825150:intron | 30.0% | |
| TAATAATAAGATCAGCAAGG+CGG | + | chr5_3:64896565-64896584 | Msa0825150:CDS | 30.0% | |
| TTTGTGTGCTTTACTAATTG+TGG | + | chr5_3:64896916-64896935 | Msa0825150:intron | 30.0% | |
| TGGATTAATTAGCAAGTTTG+AGG | - | chr5_3:64897095-64897114 | None:intergenic | 30.0% | |
| GCTAATTAATCCAAGATTTG+AGG | + | chr5_3:64897102-64897121 | Msa0825150:three_prime_UTR | 30.0% | |
| ! | TTTTCTGTTACTGTTTCGAG+GGG | - | chr5_3:64892407-64892426 | None:intergenic | 35.0% |
| CTCTCTCAAACAAACAATGA+TGG | + | chr5_3:64892475-64892494 | Msa0825150:exon | 35.0% | |
| GATGGGATTGTGAATGTTAA+GGG | - | chr5_3:64892527-64892546 | None:intergenic | 35.0% | |
| TGATGGGATTGTGAATGTTA+AGG | - | chr5_3:64892528-64892547 | None:intergenic | 35.0% | |
| ! | GTTATAAGAATCCCAGGTTT+TGG | + | chr5_3:64892756-64892775 | Msa0825150:CDS | 35.0% |
| TTTATGCTGCTGTTAAAGCT+AGG | + | chr5_3:64892825-64892844 | Msa0825150:CDS | 35.0% | |
| GAAGAATCATATGAAGAAGG+AGG | + | chr5_3:64892847-64892866 | Msa0825150:CDS | 35.0% | |
| !!! | TTTTGGGTTGTTGGTTATGT+GGG | + | chr5_3:64892988-64893007 | Msa0825150:intron | 35.0% |
| !!! | CTTTTGAGTTGTTTGCTTTG+TGG | + | chr5_3:64893239-64893258 | Msa0825150:intron | 35.0% |
| !! | TTTGAGTTGTTTGCTTTGTG+GGG | + | chr5_3:64893241-64893260 | Msa0825150:intron | 35.0% |
| GTGAGTTTATGGTGATTGAT+TGG | + | chr5_3:64893381-64893400 | Msa0825150:intron | 35.0% | |
| GTGAGTTTATCGTGATTGAT+TGG | + | chr5_3:64893572-64893591 | Msa0825150:intron | 35.0% | |
| CAAACCTCACAAATTTCAAG+TGG | - | chr5_3:64893864-64893883 | None:intergenic | 35.0% | |
| CTTGACACCAACAATTTAAG+TGG | - | chr5_3:64894090-64894109 | None:intergenic | 35.0% | |
| !! | CACTTAAATTGTTGGTGTCA+AGG | + | chr5_3:64894088-64894107 | Msa0825150:intron | 35.0% |
| !!! | TCAAGGTTTTTTTGATAGCG+AGG | + | chr5_3:64894105-64894124 | Msa0825150:intron | 35.0% |
| ATGGGACTGAAACATCTAAT+GGG | + | chr5_3:64894269-64894288 | Msa0825150:CDS | 35.0% | |
| CTGCAAAATGTTAATATGGC+AGG | + | chr5_3:64894387-64894406 | Msa0825150:intron | 35.0% | |
| GAAGAAGTTCTTGTGAAGAA+TGG | + | chr5_3:64894443-64894462 | Msa0825150:CDS | 35.0% | |
| TACGAACCTTTCAAACTTTC+AGG | - | chr5_3:64894488-64894507 | None:intergenic | 35.0% | |
| ! | AGGGAAGAAATAGAGTATCA+TGG | + | chr5_3:64894581-64894600 | Msa0825150:CDS | 35.0% |
| ! | ATAGAGTATCATGGTCTACA+AGG | + | chr5_3:64894590-64894609 | Msa0825150:CDS | 35.0% |
| !! | AAGAATTTTGATAACCGAGC+AGG | - | chr5_3:64894730-64894749 | None:intergenic | 35.0% |
| TCAACTGATATAACCAGGTA+TGG | + | chr5_3:64894836-64894855 | Msa0825150:intron | 35.0% | |
| GGGAGATTATAGACTCATTA+TGG | + | chr5_3:64894912-64894931 | Msa0825150:CDS | 35.0% | |
| ! | CTGGCATTTTGCTTATTTGT+GGG | + | chr5_3:64895012-64895031 | Msa0825150:intron | 35.0% |
| TTGAGAAGAGTTAACTAGCA+AGG | + | chr5_3:64895126-64895145 | Msa0825150:intron | 35.0% | |
| AAATGAATTATGAACCCTCG+AGG | - | chr5_3:64895208-64895227 | None:intergenic | 35.0% | |
| TAGCAGTAAAAAGGGCAAAT+AGG | - | chr5_3:64895297-64895316 | None:intergenic | 35.0% | |
| ! | TGGAAACCAAAGTTGACTTA+TGG | - | chr5_3:64895365-64895384 | None:intergenic | 35.0% |
| TACCATCAGCTAAAGACAAA+GGG | - | chr5_3:64895435-64895454 | None:intergenic | 35.0% | |
| ATACCATCAGCTAAAGACAA+AGG | - | chr5_3:64895436-64895455 | None:intergenic | 35.0% | |
| !!! | TTACCCGCAAGTTTTTTTGT+TGG | + | chr5_3:64895486-64895505 | Msa0825150:intron | 35.0% |
| TTGCCAACAAAAAAACTTGC+GGG | - | chr5_3:64895492-64895511 | None:intergenic | 35.0% | |
| AATGAAGCACAGACAATCTT+CGG | + | chr5_3:64895510-64895529 | Msa0825150:intron | 35.0% | |
| TAGCCAACAACTATAAAGCA+CGG | - | chr5_3:64895657-64895676 | None:intergenic | 35.0% | |
| GTGATTCATTAGAGTGTATC+AGG | + | chr5_3:64896013-64896032 | Msa0825150:intron | 35.0% | |
| TCGAATTAAGATACAACTCG+CGG | + | chr5_3:64896156-64896175 | Msa0825150:intron | 35.0% | |
| ACAAGTTAGAGTATGATCCA+GGG | - | chr5_3:64896259-64896278 | None:intergenic | 35.0% | |
| TACAAGTTAGAGTATGATCC+AGG | - | chr5_3:64896260-64896279 | None:intergenic | 35.0% | |
| ! | AGGAAGAGTTTCCATTTTCT+TGG | - | chr5_3:64896469-64896488 | None:intergenic | 35.0% |
| CTGCTACAAACAATTGACAT+AGG | + | chr5_3:64896730-64896749 | Msa0825150:CDS | 35.0% | |
| CTACAAACAATTGACATAGG+AGG | + | chr5_3:64896733-64896752 | Msa0825150:exon | 35.0% | |
| CAATCATTATTGGACATGCA+GGG | + | chr5_3:64896863-64896882 | Msa0825150:intron | 35.0% | |
| ATATAAGAAACCTTAGCCTC+AGG | + | chr5_3:64896992-64897011 | Msa0825150:three_prime_UTR | 35.0% | |
| !! | GGGTTTGATGATGTTGTTGT+TGG | - | chr5_3:64892387-64892406 | None:intergenic | 40.0% |
| AGGAATGAGAGGAAGATGAT+GGG | - | chr5_3:64892544-64892563 | None:intergenic | 40.0% | |
| ATGAAAGAACACCATCGTTC+TGG | - | chr5_3:64892634-64892653 | None:intergenic | 40.0% | |
| AACGATGGTGTTCTTTCATC+TGG | + | chr5_3:64892635-64892654 | Msa0825150:CDS | 40.0% | |
| GATGTTGCTGATGTTGAGTT+TGG | + | chr5_3:64892659-64892678 | Msa0825150:CDS | 40.0% | |
| ! | AGAGAGCTTTGTCGAAAATC+AGG | - | chr5_3:64892695-64892714 | None:intergenic | 40.0% |
| TTTCGACAAAGCTCTCTTGT+TGG | + | chr5_3:64892698-64892717 | Msa0825150:CDS | 40.0% | |
| !! | GTGACTTTTTGGTGGTTGAT+TGG | + | chr5_3:64892941-64892960 | Msa0825150:intron | 40.0% |
| !!! | CTTTTGGGTTGTTGGTTATG+TGG | + | chr5_3:64892987-64893006 | Msa0825150:intron | 40.0% |
| !! | TTTGGGTTGTTGGTTATGTG+GGG | + | chr5_3:64892989-64893008 | Msa0825150:intron | 40.0% |
| !! | TGATAGGTTTGAAGTTGGTG+AGG | + | chr5_3:64893044-64893063 | Msa0825150:intron | 40.0% |
| GGGTGTTTATGGTGATTGAT+TGG | + | chr5_3:64893159-64893178 | Msa0825150:intron | 40.0% | |
| ! | GTTTGTTTCTTTGCTAGACC+CGG | + | chr5_3:64894224-64894243 | Msa0825150:intron | 40.0% |
| GATGGGACTGAAACATCTAA+TGG | + | chr5_3:64894268-64894287 | Msa0825150:CDS | 40.0% | |
| TGGGACTGAAACATCTAATG+GGG | + | chr5_3:64894270-64894289 | Msa0825150:CDS | 40.0% | |
| TTCCTGACATGATCAGATAC+AGG | + | chr5_3:64894305-64894324 | Msa0825150:CDS | 40.0% | |
| AACCTGTATCTGATCATGTC+AGG | - | chr5_3:64894310-64894329 | None:intergenic | 40.0% | |
| TTCTTGTGAAGAATGGAGAG+TGG | + | chr5_3:64894450-64894469 | Msa0825150:CDS | 40.0% | |
| ! | TTCAAACTTTCAGGTGTTCC+AGG | - | chr5_3:64894479-64894498 | None:intergenic | 40.0% |
| GGAACACCTGAAAGTTTGAA+AGG | + | chr5_3:64894479-64894498 | Msa0825150:CDS | 40.0% | |
| TGGTAAGGATAAAACCTGCT+CGG | + | chr5_3:64894713-64894732 | Msa0825150:intron | 40.0% | |
| ! | GCTGGCATTTTGCTTATTTG+TGG | + | chr5_3:64895011-64895030 | Msa0825150:intron | 40.0% |
| AAGATTCTCTCAATCCTCGA+GGG | + | chr5_3:64895191-64895210 | Msa0825150:intron | 40.0% | |
| GCATTTCAAAAAGGGTCTCT+TGG | + | chr5_3:64895263-64895282 | Msa0825150:intron | 40.0% | |
| TCAGCTAAAGACAAAGGGTA+CGG | - | chr5_3:64895430-64895449 | None:intergenic | 40.0% | |
| TACCCTTTGTCTTTAGCTGA+TGG | + | chr5_3:64895430-64895449 | Msa0825150:intron | 40.0% | |
| TTGCGGGTAAGTAATGCATA+TGG | - | chr5_3:64895476-64895495 | None:intergenic | 40.0% | |
| TGTCCGTGCTTTATAGTTGT+TGG | + | chr5_3:64895651-64895670 | Msa0825150:intron | 40.0% | |
| AACTACCATGGTATCACTCA+TGG | + | chr5_3:64895736-64895755 | Msa0825150:intron | 40.0% | |
| TATTGTCGATCATATGTCCC+TGG | + | chr5_3:64896239-64896258 | Msa0825150:intron | 40.0% | |
| GAAGAAAACCCTGTACTGAA+TGG | + | chr5_3:64896392-64896411 | Msa0825150:CDS | 40.0% | |
| CTAGAGATCCATTCAGTACA+GGG | - | chr5_3:64896403-64896422 | None:intergenic | 40.0% | |
| TCTAGAGATCCATTCAGTAC+AGG | - | chr5_3:64896404-64896423 | None:intergenic | 40.0% | |
| CCTGCATGTCCAATAATGAT+TGG | - | chr5_3:64896865-64896884 | None:intergenic | 40.0% | |
| CCAATCATTATTGGACATGC+AGG | + | chr5_3:64896862-64896881 | Msa0825150:intron | 40.0% | |
| TACTTCATATCCTGAGGCTA+AGG | - | chr5_3:64897005-64897024 | None:intergenic | 40.0% | |
| GACTGTGTTCCTGTGCTATA+GGG | - | chr5_3:64892355-64892374 | None:intergenic | 45.0% | |
| AGACTGTGTTCCTGTGCTAT+AGG | - | chr5_3:64892356-64892375 | None:intergenic | 45.0% | |
| GAGGAATGAGAGGAAGATGA+TGG | - | chr5_3:64892545-64892564 | None:intergenic | 45.0% | |
| ACTATCGAGTGTGTCAGAGA+CGG | - | chr5_3:64892576-64892595 | None:intergenic | 45.0% | |
| !! | AACTTCCAGAAGCGCTTCTT+GGG | - | chr5_3:64892610-64892629 | None:intergenic | 45.0% |
| !! | AAACTTCCAGAAGCGCTTCT+TGG | - | chr5_3:64892611-64892630 | None:intergenic | 45.0% |
| TCTGGAAGTTTCCAGAACGA+TGG | + | chr5_3:64892620-64892639 | Msa0825150:CDS | 45.0% | |
| AACTCAGCAGCTTCAATCCT+AGG | - | chr5_3:64892785-64892804 | None:intergenic | 45.0% | |
| ACAGCAGCATAAAGCAACCT+AGG | - | chr5_3:64892818-64892837 | None:intergenic | 45.0% | |
| ! | TTGGGTTGTTGGTTATGTGG+GGG | + | chr5_3:64892990-64893009 | Msa0825150:intron | 45.0% |
| ACCCGGTTAACGATATGTGA+GGG | + | chr5_3:64894241-64894260 | Msa0825150:CDS | 45.0% | |
| ACCCTCACATATCGTTAACC+GGG | - | chr5_3:64894245-64894264 | None:intergenic | 45.0% | |
| GACCCTCACATATCGTTAAC+CGG | - | chr5_3:64894246-64894265 | None:intergenic | 45.0% | |
| ACGATATGTGAGGGTCATGA+TGG | + | chr5_3:64894250-64894269 | Msa0825150:CDS | 45.0% | |
| CGATATGTGAGGGTCATGAT+GGG | + | chr5_3:64894251-64894270 | Msa0825150:CDS | 45.0% | |
| ATTGGGGGACATAAGTATGC+AGG | + | chr5_3:64894641-64894660 | Msa0825150:CDS | 45.0% | |
| AGCATGAATGGAGAAGTCAC+TGG | + | chr5_3:64894686-64894705 | Msa0825150:CDS | 45.0% | |
| CAGGTATGGATATGTTGCTC+CGG | + | chr5_3:64894850-64894869 | Msa0825150:intron | 45.0% | |
| AGCAATAACGGTACATCCTC+CGG | - | chr5_3:64894872-64894891 | None:intergenic | 45.0% | |
| CATCCTCTAAATGACACACC+TGG | + | chr5_3:64894976-64894995 | Msa0825150:intron | 45.0% | |
| CAAGATTCTCTCAATCCTCG+AGG | + | chr5_3:64895190-64895209 | Msa0825150:intron | 45.0% | |
| TGTTCAGGCAACAACTGTCA+TGG | + | chr5_3:64895404-64895423 | Msa0825150:intron | 45.0% | |
| CACAGACAATCTTCGGAGTA+GGG | + | chr5_3:64895517-64895536 | Msa0825150:intron | 45.0% | |
| CTGCTACTACTCAACTACCA+TGG | + | chr5_3:64895724-64895743 | Msa0825150:intron | 45.0% | |
| GATGACCATGAGTGATACCA+TGG | - | chr5_3:64895744-64895763 | None:intergenic | 45.0% | |
| ! | TGGTTGGCTACACCAAGTTT+AGG | + | chr5_3:64895988-64896007 | Msa0825150:intron | 45.0% |
| TAAGATACAACTCGCGGCAT+CGG | + | chr5_3:64896162-64896181 | Msa0825150:intron | 45.0% | |
| TATTTCCATCAGGGGTCAGA+TGG | + | chr5_3:64896301-64896320 | Msa0825150:intron | 45.0% | |
| ATTTCCATCAGGGGTCAGAT+GGG | + | chr5_3:64896302-64896321 | Msa0825150:intron | 45.0% | |
| ! | CTCTTCCTTTTGTCAGAGTC+AGG | + | chr5_3:64896481-64896500 | Msa0825150:CDS | 45.0% |
| ATCAGCTGAAAGCTTTGCCT+CGG | - | chr5_3:64896546-64896565 | None:intergenic | 45.0% | |
| TAATAAGATCAGCAAGGCGG+CGG | + | chr5_3:64896568-64896587 | Msa0825150:CDS | 45.0% | |
| ! | TGTTGTCTGTGCTGCTGTAT+CGG | + | chr5_3:64896691-64896710 | Msa0825150:CDS | 45.0% |
| TGTGTGTGCACCTCAAATCT+TGG | - | chr5_3:64897115-64897134 | None:intergenic | 45.0% | |
| GGTGATTGGTGAGGAATGAG+AGG | - | chr5_3:64892555-64892574 | None:intergenic | 50.0% | |
| AGTGTGTCAGAGACGGTGAT+TGG | - | chr5_3:64892569-64892588 | None:intergenic | 50.0% | |
| ATCCTAGGAGGCCAAAACCT+GGG | - | chr5_3:64892770-64892789 | None:intergenic | 50.0% | |
| AATCCTAGGAGGCCAAAACC+TGG | - | chr5_3:64892771-64892790 | None:intergenic | 50.0% | |
| TCAGCAGCTTCAATCCTAGG+AGG | - | chr5_3:64892782-64892801 | None:intergenic | 50.0% | |
| CTGAGTTTGATCGCTTGCCT+AGG | + | chr5_3:64892798-64892817 | Msa0825150:CDS | 50.0% | |
| ! | TGGGTTGTTGGTTATGTGGG+GGG | + | chr5_3:64892991-64893010 | Msa0825150:intron | 50.0% |
| GACCCGGTTAACGATATGTG+AGG | + | chr5_3:64894240-64894259 | Msa0825150:intron | 50.0% | |
| AAGAATGGAGAGTGGCTACC+TGG | + | chr5_3:64894458-64894477 | Msa0825150:CDS | 50.0% | |
| GATCACGTGATCGCAGATGT+GGG | + | chr5_3:64894528-64894547 | Msa0825150:CDS | 50.0% | |
| ATCACGTGATCGCAGATGTG+GGG | + | chr5_3:64894529-64894548 | Msa0825150:CDS | 50.0% | |
| ! | TGGGGTTTGTGGACCTGTTT+TGG | + | chr5_3:64894547-64894566 | Msa0825150:CDS | 50.0% |
| ATGGAGAAGTCACTGGACAC+TGG | + | chr5_3:64894693-64894712 | Msa0825150:CDS | 50.0% | |
| GAAGTCACTGGACACTGGTA+AGG | + | chr5_3:64894698-64894717 | Msa0825150:intron | 50.0% | |
| CGGAGCAACATATCCATACC+TGG | - | chr5_3:64894852-64894871 | None:intergenic | 50.0% | |
| GTATGGATATGTTGCTCCGG+AGG | + | chr5_3:64894853-64894872 | Msa0825150:CDS | 50.0% | |
| AAAATGCCAGCAGCAGAGAG+CGG | - | chr5_3:64895002-64895021 | None:intergenic | 50.0% | |
| GCACAGACAATCTTCGGAGT+AGG | + | chr5_3:64895516-64895535 | Msa0825150:intron | 50.0% | |
| !! | TGGTGTCGACATGTCGTGTT+CGG | + | chr5_3:64895622-64895641 | Msa0825150:intron | 50.0% |
| TAATCCCATCTGACCCCTGA+TGG | - | chr5_3:64896309-64896328 | None:intergenic | 50.0% | |
| AGGCTTCTGCTGAGTTGCAT+AGG | + | chr5_3:64896362-64896381 | Msa0825150:CDS | 50.0% | |
| GGCTTCTGCTGAGTTGCATA+GGG | + | chr5_3:64896363-64896382 | Msa0825150:CDS | 50.0% | |
| GCTTCTGCTGAGTTGCATAG+GGG | + | chr5_3:64896364-64896383 | Msa0825150:CDS | 50.0% | |
| AGCAGCTCACTCCATTTGGT+TGG | - | chr5_3:64896445-64896464 | None:intergenic | 50.0% | |
| GTGAGCTGCTGCCAAGAAAA+TGG | + | chr5_3:64896455-64896474 | Msa0825150:CDS | 50.0% | |
| TGACGCCTGACTCTGACAAA+AGG | - | chr5_3:64896489-64896508 | None:intergenic | 50.0% | |
| GCGGTTTCTCGAATCAACAG+CGG | + | chr5_3:64896587-64896606 | Msa0825150:CDS | 50.0% | |
| CGGTTTCTCGAATCAACAGC+GGG | + | chr5_3:64896588-64896607 | Msa0825150:CDS | 50.0% | |
| TCTCGAATCAACAGCGGGAA+AGG | + | chr5_3:64896593-64896612 | Msa0825150:CDS | 50.0% | |
| TCTACGACAGCATGGCTTGA+CGG | + | chr5_3:64896635-64896654 | Msa0825150:CDS | 50.0% | |
| TTGGACATGCAGGGAACGAA+TGG | + | chr5_3:64896872-64896891 | Msa0825150:intron | 50.0% | |
| TGGACATGCAGGGAACGAAT+GGG | + | chr5_3:64896873-64896892 | Msa0825150:intron | 50.0% | |
| GTCAGAGACGGTGATTGGTG+AGG | - | chr5_3:64892564-64892583 | None:intergenic | 55.0% | |
| !! | TCCAGAAGCGCTTCTTGGGT+CGG | - | chr5_3:64892606-64892625 | None:intergenic | 55.0% |
| !! | ATCCCAGGTTTTGGCCTCCT+AGG | + | chr5_3:64892765-64892784 | Msa0825150:CDS | 55.0% |
| GGATCACGTGATCGCAGATG+TGG | + | chr5_3:64894527-64894546 | Msa0825150:CDS | 55.0% | |
| GATCGCAGATGTGGGGTTTG+TGG | + | chr5_3:64894536-64894555 | Msa0825150:CDS | 55.0% | |
| TTAGCCCGTGCTCGCACATT+GGG | + | chr5_3:64894624-64894643 | Msa0825150:CDS | 55.0% | |
| !! | CGGCCAGGTGTGTCATTTAG+AGG | - | chr5_3:64894982-64895001 | None:intergenic | 55.0% |
| ! | ATCTTCGGAGTAGGGTGTCC+CGG | + | chr5_3:64895525-64895544 | Msa0825150:intron | 55.0% |
| GGTGTCTGACACCGACACAT+AGG | + | chr5_3:64895563-64895582 | Msa0825150:intron | 55.0% | |
| ACGAGCTGCTGCCAACCAAA+TGG | + | chr5_3:64896431-64896450 | Msa0825150:CDS | 55.0% | |
| TGGCAGCAGCTCACTCCATT+TGG | - | chr5_3:64896449-64896468 | None:intergenic | 55.0% | |
| TTGTCAGAGTCAGGCGTCAG+TGG | + | chr5_3:64896490-64896509 | Msa0825150:CDS | 55.0% | |
| TGCCTCGGTCTCGATGACAT+CGG | - | chr5_3:64896531-64896550 | None:intergenic | 55.0% | |
| GGTCTCGATCTACGACAGCA+TGG | + | chr5_3:64896627-64896646 | Msa0825150:CDS | 55.0% | |
| AAGCGCTTCTTGGGTCGGTG+AGG | - | chr5_3:64892601-64892620 | None:intergenic | 60.0% | |
| !! | ACCGACCCAAGAAGCGCTTC+TGG | + | chr5_3:64892602-64892621 | Msa0825150:CDS | 60.0% |
| GTTAGCCCGTGCTCGCACAT+TGG | + | chr5_3:64894623-64894642 | Msa0825150:CDS | 60.0% | |
| TAGCCCGTGCTCGCACATTG+GGG | + | chr5_3:64894625-64894644 | Msa0825150:CDS | 60.0% | |
| TGTCCCCCAATGTGCGAGCA+CGG | - | chr5_3:64894632-64894651 | None:intergenic | 60.0% | |
| CTCCGATGTCATCGAGACCG+AGG | + | chr5_3:64896526-64896545 | Msa0825150:CDS | 60.0% | |
| GCGGGAAAGGAGCTTCATGC+AGG | + | chr5_3:64896606-64896625 | Msa0825150:CDS | 60.0% | |
| GACAGCATGGCTTGACGGCT+GGG | + | chr5_3:64896640-64896659 | Msa0825150:CDS | 60.0% | |
| AGCCCGTGCTCGCACATTGG+GGG | + | chr5_3:64894626-64894645 | Msa0825150:CDS | 65.0% | |
| GTCCCCCAATGTGCGAGCAC+GGG | - | chr5_3:64894631-64894650 | None:intergenic | 65.0% | |
| ! | GGAGTAGGGTGTCCCGGTGT+TGG | + | chr5_3:64895531-64895550 | Msa0825150:intron | 65.0% |
| ! | TCCCGGTGTTGGACACGCGT+CGG | + | chr5_3:64895542-64895561 | Msa0825150:intron | 65.0% |
| ACCGACGCGTGTCCAACACC+GGG | - | chr5_3:64895546-64895565 | None:intergenic | 65.0% | |
| CACCGACGCGTGTCCAACAC+CGG | - | chr5_3:64895547-64895566 | None:intergenic | 65.0% | |
| CGACAGCATGGCTTGACGGC+TGG | + | chr5_3:64896639-64896658 | Msa0825150:CDS | 65.0% | |
| ACCTGGCCGCTCTCTGCTGC+TGG | + | chr5_3:64894993-64895012 | Msa0825150:intron | 70.0% | |
| GCCAGCAGCAGAGAGCGGCC+AGG | - | chr5_3:64894997-64895016 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 64892350 | 64897156 | 64892350 | ID=Msa0825150;Name=Msa0825150 |
| chr5_3 | mRNA | 64892350 | 64897156 | 64892350 | ID=Msa0825150-mRNA-1;Parent=Msa0825150;Name=Msa0825150-mRNA-1;_AED=0.17;_eAED=0.17;_QI=141|1|1|1|0.66|0.57|7|273|430 |
| chr5_3 | exon | 64892350 | 64892868 | 64892350 | ID=Msa0825150-mRNA-1:exon:20286;Parent=Msa0825150-mRNA-1 |
| chr5_3 | exon | 64894241 | 64894326 | 64894241 | ID=Msa0825150-mRNA-1:exon:20287;Parent=Msa0825150-mRNA-1 |
| chr5_3 | exon | 64894409 | 64894714 | 64894409 | ID=Msa0825150-mRNA-1:exon:20288;Parent=Msa0825150-mRNA-1 |
| chr5_3 | exon | 64894853 | 64894936 | 64894853 | ID=Msa0825150-mRNA-1:exon:20289;Parent=Msa0825150-mRNA-1 |
| chr5_3 | exon | 64896313 | 64896786 | 64896313 | ID=Msa0825150-mRNA-1:exon:20290;Parent=Msa0825150-mRNA-1 |
| chr5_3 | exon | 64896884 | 64896923 | 64896884 | ID=Msa0825150-mRNA-1:exon:20291;Parent=Msa0825150-mRNA-1 |
| chr5_3 | exon | 64896959 | 64897156 | 64896959 | ID=Msa0825150-mRNA-1:exon:20292;Parent=Msa0825150-mRNA-1 |
| chr5_3 | five_prime_UTR | 64892350 | 64892490 | 64892350 | ID=Msa0825150-mRNA-1:five_prime_utr;Parent=Msa0825150-mRNA-1 |
| chr5_3 | CDS | 64892491 | 64892868 | 64892491 | ID=Msa0825150-mRNA-1:cds;Parent=Msa0825150-mRNA-1 |
| chr5_3 | CDS | 64894241 | 64894326 | 64894241 | ID=Msa0825150-mRNA-1:cds;Parent=Msa0825150-mRNA-1 |
| chr5_3 | CDS | 64894409 | 64894714 | 64894409 | ID=Msa0825150-mRNA-1:cds;Parent=Msa0825150-mRNA-1 |
| chr5_3 | CDS | 64894853 | 64894936 | 64894853 | ID=Msa0825150-mRNA-1:cds;Parent=Msa0825150-mRNA-1 |
| chr5_3 | CDS | 64896313 | 64896751 | 64896313 | ID=Msa0825150-mRNA-1:cds;Parent=Msa0825150-mRNA-1 |
| chr5_3 | three_prime_UTR | 64896752 | 64896786 | 64896752 | ID=Msa0825150-mRNA-1:three_prime_utr;Parent=Msa0825150-mRNA-1 |
| chr5_3 | three_prime_UTR | 64896884 | 64896923 | 64896884 | ID=Msa0825150-mRNA-1:three_prime_utr;Parent=Msa0825150-mRNA-1 |
| chr5_3 | three_prime_UTR | 64896959 | 64897156 | 64896959 | ID=Msa0825150-mRNA-1:three_prime_utr;Parent=Msa0825150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
