AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1063950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063950 MtrunA17_Chr7g0241761 95.527 313 14 0 1 313 1 313 0.0 622
Msa1063950 MtrunA17_Chr5g0429521 58.675 317 106 9 7 312 1 303 2.56e-114 332
Msa1063950 MtrunA17_Chr3g0104071 53.231 325 115 12 11 311 5 316 2.48e-102 303
Msa1063950 MtrunA17_Chr5g0436501 62.500 208 69 2 11 216 3 203 6.43e-87 261
Msa1063950 MtrunA17_Chr1g0162081 51.031 194 84 2 30 215 7 197 1.66e-56 184
Msa1063950 MtrunA17_Chr1g0210471 50.000 182 74 4 33 208 22 192 2.65e-53 174
Msa1063950 MtrunA17_Chr4g0062741 38.214 280 130 7 30 278 3 270 2.41e-51 171
Msa1063950 MtrunA17_Chr8g0365011 36.434 258 125 8 33 275 6 239 3.28e-36 131
Msa1063950 MtrunA17_Chr6g0488471 78.873 71 15 0 134 204 91 161 3.95e-33 123
Msa1063950 MtrunA17_Chr2g0331031 74.648 71 18 0 135 205 104 174 5.93e-31 119
Msa1063950 MtrunA17_Chr4g0055931 70.667 75 22 0 132 206 87 161 1.26e-30 117
Msa1063950 MtrunA17_Chr8g0389241 76.056 71 16 1 134 204 99 168 1.57e-30 116
Msa1063950 MtrunA17_Chr5g0415191 67.949 78 25 0 134 211 96 173 2.02e-27 108
Msa1063950 MtrunA17_Chr4g0059701 66.667 78 26 0 128 205 72 149 1.33e-25 103
Msa1063950 MtrunA17_Chr3g0135671 48.718 117 53 3 98 214 54 163 4.50e-25 100
Msa1063950 MtrunA17_Chr3g0092621 54.545 77 35 0 140 216 84 160 2.59e-23 94.4
Msa1063950 MtrunA17_Chr5g0432941 33.333 192 110 5 34 223 21 196 5.81e-23 94.7
Msa1063950 MtrunA17_Chr5g0432921 34.359 195 105 7 34 223 20 196 1.74e-22 93.6
Msa1063950 MtrunA17_Chr5g0440731 53.086 81 35 1 129 206 94 174 1.99e-22 95.1
Msa1063950 MtrunA17_Chr5g0440741 55.696 79 32 1 131 206 91 169 5.15e-22 93.6
Msa1063950 MtrunA17_Chr5g0409841 57.534 73 29 1 136 206 88 160 7.12e-21 89.4
Msa1063950 MtrunA17_Chr5g0409831 57.895 76 29 1 136 208 73 148 6.92e-20 86.7
Msa1063950 MtrunA17_Chr6g0452791 72.917 48 13 0 140 187 80 127 4.12e-19 83.2
Msa1063950 MtrunA17_Chr8g0364741 36.975 119 64 2 31 148 6 114 1.15e-18 80.5
Msa1063950 MtrunA17_Chr3g0141601 50.000 78 36 1 33 107 5 82 3.60e-18 78.2
Msa1063950 MtrunA17_Chr8g0364731 60.294 68 25 1 150 215 11 78 6.88e-18 80.1
Msa1063950 MtrunA17_Chr1g0155181 48.611 72 37 0 30 101 2 73 8.69e-18 77.0
Msa1063950 MtrunA17_Chr5g0404101 46.667 75 40 0 23 97 7 81 2.51e-17 75.9
Msa1063950 MtrunA17_Chr3g0144631 50.000 68 34 0 33 100 14 81 1.05e-16 73.9
Msa1063950 MtrunA17_Chr8g0373131 50.000 70 34 1 32 101 2 70 4.18e-16 72.0
Msa1063950 MtrunA17_Chr8g0373111 50.000 70 34 1 32 101 2 70 4.50e-16 71.6
Msa1063950 MtrunA17_Chr8g0373121 50.000 70 34 1 32 101 2 70 4.50e-16 71.6
Msa1063950 MtrunA17_Chr6g0449111 44.928 69 38 0 30 98 5 73 1.77e-15 70.5
Msa1063950 MtrunA17_Chr7g0255841 53.030 66 31 0 38 103 15 80 1.54e-14 68.2
Msa1063950 MtrunA17_Chr3g0081631 43.529 85 38 2 35 118 10 85 1.16e-13 65.9
Msa1063950 MtrunA17_Chr8g0373101 47.143 70 36 1 32 101 2 70 1.16e-13 65.1
Msa1063950 MtrunA17_Chr3g0113121 48.000 75 32 1 142 209 97 171 1.82e-13 68.6
Msa1063950 MtrunA17_Chr1g0192061 52.113 71 29 2 142 208 63 132 4.59e-13 66.6
Msa1063950 MtrunA17_Chr5g0404301 49.206 63 31 1 33 95 2 63 6.08e-13 63.2
Msa1063950 MtrunA17_Chr8g0370121 44.068 59 33 0 128 186 88 146 4.80e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063950 AT2G38090.1 75.238 210 45 2 7 209 1 210 4.30e-117 340
Msa1063950 AT5G58900.1 64.651 215 59 5 11 211 1 212 8.61e-91 272
Msa1063950 AT5G01200.1 59.821 224 65 6 2 209 1 215 2.31e-83 253
Msa1063950 AT3G11280.2 58.937 207 66 4 11 209 1 196 1.04e-75 233
Msa1063950 AT3G11280.1 58.937 207 66 4 11 209 1 196 1.04e-75 233
Msa1063950 AT5G05790.2 60.638 188 67 3 33 218 29 211 4.90e-72 224
Msa1063950 AT5G05790.1 60.638 188 67 3 33 218 29 211 4.90e-72 224
Msa1063950 AT5G08520.1 50.000 188 91 2 30 215 7 193 1.95e-54 179
Msa1063950 AT1G49010.1 48.500 200 80 4 33 210 6 204 8.22e-50 168
Msa1063950 AT5G04760.1 47.027 185 86 3 33 217 4 176 1.54e-47 159
Msa1063950 AT5G23650.1 45.304 181 91 3 32 207 10 187 2.25e-44 154
Msa1063950 AT3G10580.2 38.043 184 92 4 38 220 11 173 5.49e-32 120
Msa1063950 AT5G47390.1 76.712 73 17 0 132 204 88 160 1.04e-31 122
Msa1063950 AT3G10580.1 38.043 184 92 4 38 220 11 173 1.15e-31 120
Msa1063950 AT5G61620.1 56.436 101 37 1 111 211 86 179 7.85e-29 113
Msa1063950 AT5G56840.1 59.551 89 34 2 135 221 86 174 1.29e-27 107
Msa1063950 AT1G70000.1 72.222 72 20 0 134 205 92 163 1.39e-26 105
Msa1063950 AT1G70000.2 72.222 72 20 0 134 205 92 163 1.39e-26 105
Msa1063950 AT4G09450.1 37.572 173 87 3 34 206 6 157 1.99e-26 103
Msa1063950 AT3G16350.1 84.906 53 8 0 135 187 132 184 2.01e-25 105
Msa1063950 AT1G19000.2 64.935 77 27 0 136 212 98 174 1.44e-24 100
Msa1063950 AT1G19000.1 64.935 77 27 0 136 212 98 174 1.44e-24 100
Msa1063950 AT1G74840.2 80.769 52 10 0 135 186 91 142 1.45e-23 97.1
Msa1063950 AT1G74840.1 80.769 52 10 0 135 186 91 142 2.19e-23 97.4
Msa1063950 AT3G10590.1 35.204 196 118 7 34 226 6 195 4.56e-20 87.0
Msa1063950 AT1G75250.2 53.731 67 31 0 33 99 10 76 3.50e-17 75.9
Msa1063950 AT1G75250.1 53.731 67 31 0 33 99 10 76 1.07e-16 75.5
Msa1063950 AT4G39250.1 48.485 66 34 0 35 100 14 79 1.92e-15 71.2
Msa1063950 AT2G21650.1 47.761 67 35 0 35 101 14 80 4.43e-14 67.8
Msa1063950 AT1G19510.1 44.872 78 40 1 38 115 15 89 6.20e-14 67.4
Msa1063950 AT2G18328.1 46.032 63 34 0 39 101 15 77 7.95e-12 60.8

Find 102 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAGCAAAACTATATATTT+AGG 0.103703 7_2:+56248495 Msa1063950:three_prime_UTR
GAAACAACCAATTGGAATTT+TGG 0.118121 7_2:-56246497 None:intergenic
ACGAAGGCGGTTTCATTTCT+TGG 0.231424 7_2:-56247831 None:intergenic
TATTTCATTAGGCAGCTTTC+AGG 0.241192 7_2:+56247757 Msa1063950:CDS
TATTAATAATTAATAAATTC+TGG 0.249828 7_2:+56246208 Msa1063950:five_prime_UTR
AATTTAGAACATAAGGGTTT+TGG 0.264507 7_2:-56246078 None:intergenic
TTTAGATTCCTTAGTTATTT+GGG 0.278161 7_2:+56246265 Msa1063950:five_prime_UTR
TTCATAGATTCTAATTACTA+TGG 0.291046 7_2:-56248169 None:intergenic
TGTTTGATAATATGCTTCTT+TGG 0.301353 7_2:+56246326 Msa1063950:five_prime_UTR
GCATATTATCAAACAGCATT+TGG 0.304060 7_2:-56246318 None:intergenic
GTAGCAAAACTATATATTTA+GGG 0.309531 7_2:+56248496 Msa1063950:three_prime_UTR
TACAAAAGTGGAAGTTCTTA+TGG 0.330111 7_2:-56246349 None:intergenic
ACATAGTTCCATGAGTGAAT+TGG 0.333627 7_2:-56248423 None:intergenic
AGGGTTGCTGAGATGATTCC+TGG 0.340116 7_2:+56246615 Msa1063950:CDS
TCCTTCTTCTCTGGACCATT+TGG 0.345458 7_2:+56247867 Msa1063950:CDS
TTGGAGTGAAATTAAGCAAC+TGG 0.359489 7_2:-56246059 None:intergenic
ACATCAAAATTTAGAACATA+AGG 0.371517 7_2:-56246085 None:intergenic
TGCTTTGGCTTATTATGATA+AGG 0.376321 7_2:+56246572 Msa1063950:CDS
ATGCTCAGAAGTATTTCATT+AGG 0.387800 7_2:+56247746 Msa1063950:CDS
AAGACAGTGATCTATGAAAC+AGG 0.390474 7_2:-56245832 None:intergenic
CATATTATCAAACAGCATTT+GGG 0.398281 7_2:-56246317 None:intergenic
TTAGTTGAATTGAAAACAAA+TGG 0.411456 7_2:-56247976 None:intergenic
CATCAAAATTTAGAACATAA+GGG 0.411862 7_2:-56246084 None:intergenic
AAAAGTATGGCAAGGGAGAC+TGG 0.414734 7_2:+56247668 Msa1063950:CDS
CCTATATCCAAAATTCCAAT+TGG 0.417676 7_2:+56246490 Msa1063950:CDS
TGATGTGATTAAACAGTATA+GGG 0.417708 7_2:+56246650 Msa1063950:CDS
GCTGGTTTGATACCAGTTCC+TGG 0.417898 7_2:+56246702 Msa1063950:CDS
TAGTATCAAAAGGTGAAAAC+TGG 0.419071 7_2:-56248092 None:intergenic
GCAACCCTTATCCATCTATC+AGG 0.422928 7_2:-56246600 None:intergenic
TAAGCTCTTTGAGAATGCTT+TGG 0.425147 7_2:+56246557 Msa1063950:CDS
TTCTCTGGACCATTTGGTGA+AGG 0.432138 7_2:+56247873 Msa1063950:CDS
ATAAGGATACTCCTGATAGA+TGG 0.435285 7_2:+56246589 Msa1063950:CDS
AAGTAACGATCCTTCTTCTC+TGG 0.444961 7_2:+56247858 Msa1063950:CDS
ACAAATGGCATGCCTTCATC+TGG 0.446288 7_2:-56247961 None:intergenic
TTCAGCTACCCAAATAACTA+AGG 0.451392 7_2:-56246273 None:intergenic
TTTGTCCAGCATGGTTAAGC+AGG 0.451543 7_2:+56247921 Msa1063950:CDS
TTTCAGGAGGGAAGGATAAG+AGG 0.455606 7_2:+56247773 Msa1063950:CDS
GATGTGTGTGTTATTGAAGC+TGG 0.457311 7_2:+56246684 Msa1063950:CDS
CATATAATTCCACTCTATGT+AGG 0.471260 7_2:-56248333 None:intergenic
ATACTCCTGATAGATGGATA+AGG 0.478456 7_2:+56246595 Msa1063950:CDS
GATTTGCAACCTTCACCAAA+TGG 0.478639 7_2:-56247882 None:intergenic
GTGATGTGATTAAACAGTAT+AGG 0.483162 7_2:+56246649 Msa1063950:CDS
GACTGGAAATTACCAGATGA+AGG 0.483800 7_2:+56247949 Msa1063950:CDS
TACTCCTGATAGATGGATAA+GGG 0.485001 7_2:+56246596 Msa1063950:CDS
ACCAAATGGTCCAGAGAAGA+AGG 0.487953 7_2:-56247868 None:intergenic
TTCTTCCTTTCCTGCTCCGA+CGG 0.488987 7_2:-56246828 None:intergenic
CTAGTTGTATAACCAGGAAC+TGG 0.504989 7_2:-56246714 None:intergenic
CAAAGGGGCTGAGTTGTGAT+TGG 0.509591 7_2:-56245766 None:intergenic
AGAGAGATAAGCTACAAAAG+TGG 0.511057 7_2:-56246361 None:intergenic
ATTTGCAAAATAGTATCAAA+AGG 0.512642 7_2:-56248102 None:intergenic
CTCGGCCGTCGGAGCAGGAA+AGG 0.514515 7_2:+56246823 Msa1063950:CDS
CTATGCTCCTCTTCAGTCCA+TGG 0.515244 7_2:-56246858 None:intergenic
GAGATGAAAATAAGCATAAG+TGG 0.519517 7_2:-56245922 None:intergenic
TTCACAAGAATCGAAATCAC+CGG 0.522859 7_2:+56248035 Msa1063950:CDS
GATTGACCACTGTGATATCA+TGG 0.524764 7_2:-56247807 None:intergenic
AACTAAAGGAAACATGTTTG+TGG 0.525249 7_2:+56247993 Msa1063950:CDS
TGGTTAAGCAGGAATTTGAC+TGG 0.530767 7_2:+56247932 Msa1063950:CDS
GGTATCCATGATGAGTGCTT+CGG 0.532341 7_2:-56248071 None:intergenic
AAATTCCTGCTTAACCATGC+TGG 0.533010 7_2:-56247926 None:intergenic
ATGTAGTTCCAATTCACTCA+TGG 0.543564 7_2:+56248415 Msa1063950:three_prime_UTR
GCATGACTTGCGACTTGAGT+TGG 0.545637 7_2:-56247727 None:intergenic
GAATCATAATTTGTCCAGCA+TGG 0.552113 7_2:+56247912 Msa1063950:CDS
TCACTCATGGAACTATGTAA+AGG 0.559728 7_2:+56248428 Msa1063950:three_prime_UTR
TTCATTAGGCAGCTTTCAGG+AGG 0.562103 7_2:+56247760 Msa1063950:CDS
ATGTTTGTGGCACCGTCGTG+CGG 0.567658 7_2:+56248006 Msa1063950:CDS
TCACAAGAATCGAAATCACC+GGG 0.570944 7_2:+56248036 Msa1063950:CDS
TGTTTGTGGCACCGTCGTGC+GGG 0.575136 7_2:+56248007 Msa1063950:CDS
TTATCTAGAACAATGAATAG+AGG 0.579227 7_2:+56246444 Msa1063950:CDS
GAGACTGGAGAAACATCTCT+AGG 0.579618 7_2:+56247683 Msa1063950:CDS
TAGGCAGCTTTCAGGAGGGA+AGG 0.581740 7_2:+56247765 Msa1063950:CDS
AAGTGGTTCGACTCGGCCGT+CGG 0.583732 7_2:+56246812 Msa1063950:CDS
AGGGGCTGAGTTGTGATTGG+TGG 0.584811 7_2:-56245763 None:intergenic
TCGGAGCAGGAAAGGAAGAA+AGG 0.584815 7_2:+56246831 Msa1063950:CDS
GTACTCCGAAGCACTCATCA+TGG 0.587369 7_2:+56248066 Msa1063950:CDS
TGGAGTGAAATTAAGCAACT+GGG 0.590812 7_2:-56246058 None:intergenic
ATTATCAAACAGCATTTGGG+TGG 0.594579 7_2:-56246314 None:intergenic
GACTTGAGTTGGTGTTCTTG+TGG 0.595027 7_2:-56247716 None:intergenic
TTGGATTGGGATAACAGTGA+AGG 0.598870 7_2:+56246747 Msa1063950:CDS
TCGTTACTTTCTGACGAAGG+CGG 0.604880 7_2:-56247844 None:intergenic
AAAGGAAGAAAGGTGTGCCA+TGG 0.605391 7_2:+56246841 Msa1063950:CDS
CATGGACTGAAGAGGAGCAT+AGG 0.606328 7_2:+56246859 Msa1063950:CDS
GAGGATCTTCCTACATAGAG+TGG 0.606785 7_2:+56248324 Msa1063950:three_prime_UTR
CTTCGGAGTACATTATGCCC+CGG 0.609016 7_2:-56248054 None:intergenic
TGGATTGGGATAACAGTGAA+GGG 0.609140 7_2:+56246748 Msa1063950:CDS
AGGTGTGCCATGGACTGAAG+AGG 0.618331 7_2:+56246851 Msa1063950:CDS
GGAAAAGAAGTGGTTCGACT+CGG 0.625707 7_2:+56246805 Msa1063950:CDS
CTGGACAAATTATGATTCTG+TGG 0.628813 7_2:-56247907 None:intergenic
AGTGTTGGTGGGAAAAGAAG+TGG 0.631430 7_2:+56246795 Msa1063950:CDS
TGTACTTTAACAGATTTGTG+AGG 0.635184 7_2:+56248305 Msa1063950:three_prime_UTR
AAAGAGCTAGTTGTATAACC+AGG 0.644968 7_2:-56246720 None:intergenic
ATGTACTAGAATAGAACTAG+TGG 0.646388 7_2:+56248465 Msa1063950:three_prime_UTR
GGATCGTTACTTTCTGACGA+AGG 0.646642 7_2:-56247847 None:intergenic
TTGTGAAAGAAGAAGTGAAG+TGG 0.648643 7_2:-56245896 None:intergenic
TCATTAGGCAGCTTTCAGGA+GGG 0.651718 7_2:+56247761 Msa1063950:CDS
GCAGCATCAATGAACTGAGG+AGG 0.656599 7_2:+56248134 Msa1063950:exon
TGGTTGTTTCAAGAAAACAA+TGG 0.668637 7_2:+56246510 Msa1063950:CDS
AGACAGTGATCTATGAAACA+GGG 0.679917 7_2:-56245831 None:intergenic
TGTGAAGAAATCCCGCACGA+CGG 0.712958 7_2:-56248018 None:intergenic
TATGCAGCATCAATGAACTG+AGG 0.716248 7_2:+56248131 Msa1063950:exon
ATGAAAATAAGCATAAGTGG+TGG 0.742414 7_2:-56245919 None:intergenic
CACAAGAATCGAAATCACCG+GGG 0.772907 7_2:+56248037 Msa1063950:CDS
AAGTATCCATGATATCACAG+TGG 0.791298 7_2:+56247801 Msa1063950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTCTTTTCTCTTT+TGG + chr7_2:56246138-56246157 Msa1063950:five_prime_UTR 15.0%
!!! ATTTTACTTAGTGAAATTAT+AGG + chr7_2:56246974-56246993 Msa1063950:intron 15.0%
!!! AATGAGTTGAAGAATTTTAT+TGG - chr7_2:56245999-56246018 None:intergenic 20.0%
!!! CATCAAAATTTAGAACATAA+GGG - chr7_2:56246087-56246106 None:intergenic 20.0%
!!! ACATCAAAATTTAGAACATA+AGG - chr7_2:56246088-56246107 None:intergenic 20.0%
!!! TTATGTTCTAAATTTTGATG+TGG + chr7_2:56246087-56246106 Msa1063950:five_prime_UTR 20.0%
!!! TATGTTCTAAATTTTGATGT+GGG + chr7_2:56246088-56246107 Msa1063950:five_prime_UTR 20.0%
!! ATAACTAAGGAATCTAAAAA+AGG - chr7_2:56246263-56246282 None:intergenic 20.0%
!!! TTTTAGATTCCTTAGTTATT+TGG + chr7_2:56246264-56246283 Msa1063950:five_prime_UTR 20.0%
!! TTTAGATTCCTTAGTTATTT+GGG + chr7_2:56246265-56246284 Msa1063950:five_prime_UTR 20.0%
!!! CCATTTTCTAACATTATTAA+CGG - chr7_2:56247396-56247415 None:intergenic 20.0%
!! TATGGTTGATTAACATAAAA+AGG - chr7_2:56247627-56247646 None:intergenic 20.0%
!!! TTTTTATGTTAATCAACCAT+AGG + chr7_2:56247626-56247645 Msa1063950:intron 20.0%
!! TTAGTTGAATTGAAAACAAA+TGG - chr7_2:56247979-56247998 None:intergenic 20.0%
!!! TTTGTTTTCAATTCAACTAA+AGG + chr7_2:56247979-56247998 Msa1063950:CDS 20.0%
!! ATTTGCAAAATAGTATCAAA+AGG - chr7_2:56248105-56248124 None:intergenic 20.0%
!! TTCATAGATTCTAATTACTA+TGG - chr7_2:56248172-56248191 None:intergenic 20.0%
!! TGTAGCAAAACTATATATTT+AGG + chr7_2:56248495-56248514 Msa1063950:three_prime_UTR 20.0%
!! GTAGCAAAACTATATATTTA+GGG + chr7_2:56248496-56248515 Msa1063950:three_prime_UTR 20.0%
!!! AATTTAGAACATAAGGGTTT+TGG - chr7_2:56246081-56246100 None:intergenic 25.0%
!!! TAAATTCTGGATTTTTTCCT+TGG + chr7_2:56246221-56246240 Msa1063950:five_prime_UTR 25.0%
! CATATTATCAAACAGCATTT+GGG - chr7_2:56246320-56246339 None:intergenic 25.0%
!! TGTTTGATAATATGCTTCTT+TGG + chr7_2:56246326-56246345 Msa1063950:five_prime_UTR 25.0%
!! TTATCTAGAACAATGAATAG+AGG + chr7_2:56246444-56246463 Msa1063950:CDS 25.0%
! TGATGTGATTAAACAGTATA+GGG + chr7_2:56246650-56246669 Msa1063950:CDS 25.0%
! TTAGTGAAATTATAGGTGTT+GGG + chr7_2:56246981-56247000 Msa1063950:intron 25.0%
!! AATTTTGTGCTTGAAATGAA+TGG + chr7_2:56247005-56247024 Msa1063950:intron 25.0%
! ACTTAACCAAAGAACTAATA+TGG - chr7_2:56247067-56247086 None:intergenic 25.0%
! TAAAAACCTTCAATCATTCT+AGG - chr7_2:56247121-56247140 None:intergenic 25.0%
! ACTATGGAATCATTCTAATA+TGG - chr7_2:56247151-56247170 None:intergenic 25.0%
! AATGATTCCATAGTGTAAAT+CGG + chr7_2:56247157-56247176 Msa1063950:intron 25.0%
!!! GTTTTTGTGCTTTGAAATTA+TGG + chr7_2:56247281-56247300 Msa1063950:intron 25.0%
! CCGTTAATAATGTTAGAAAA+TGG + chr7_2:56247393-56247412 Msa1063950:intron 25.0%
! TATAATAATCTATGTAACCC+CGG - chr7_2:56247502-56247521 None:intergenic 25.0%
! GGGTTACATAGATTATTATA+TGG + chr7_2:56247502-56247521 Msa1063950:intron 25.0%
!! AACAAGTAAAGCATTTATCA+AGG - chr7_2:56247533-56247552 None:intergenic 25.0%
! TTGATAAATGCTTTACTTGT+TGG + chr7_2:56247532-56247551 Msa1063950:intron 25.0%
!! TGATTTTCTGATTACTTGTT+TGG + chr7_2:56248273-56248292 Msa1063950:three_prime_UTR 25.0%
ATGAAAATAAGCATAAGTGG+TGG - chr7_2:56245922-56245941 None:intergenic 30.0%
GAGATGAAAATAAGCATAAG+TGG - chr7_2:56245925-56245944 None:intergenic 30.0%
TGGAACAAAAAGAATGAAGA+GGG - chr7_2:56245979-56245998 None:intergenic 30.0%
TTGGAACAAAAAGAATGAAG+AGG - chr7_2:56245980-56245999 None:intergenic 30.0%
GCATATTATCAAACAGCATT+TGG - chr7_2:56246321-56246340 None:intergenic 30.0%
TACAAAAGTGGAAGTTCTTA+TGG - chr7_2:56246352-56246371 None:intergenic 30.0%
! CCAATTGGAATTTTGGATAT+AGG - chr7_2:56246493-56246512 None:intergenic 30.0%
CCTATATCCAAAATTCCAAT+TGG + chr7_2:56246490-56246509 Msa1063950:CDS 30.0%
! GAAACAACCAATTGGAATTT+TGG - chr7_2:56246500-56246519 None:intergenic 30.0%
! GTTTTCTTGAAACAACCAAT+TGG - chr7_2:56246508-56246527 None:intergenic 30.0%
! TGGTTGTTTCAAGAAAACAA+TGG + chr7_2:56246510-56246529 Msa1063950:CDS 30.0%
! TGCTTTGGCTTATTATGATA+AGG + chr7_2:56246572-56246591 Msa1063950:CDS 30.0%
GTGATGTGATTAAACAGTAT+AGG + chr7_2:56246649-56246668 Msa1063950:CDS 30.0%
!! TACAACTAGCTCTTTTACAT+TGG + chr7_2:56246728-56246747 Msa1063950:CDS 30.0%
! TAGCTCTTTTACATTGGATT+GGG + chr7_2:56246734-56246753 Msa1063950:CDS 30.0%
CTTAGTGAAATTATAGGTGT+TGG + chr7_2:56246980-56246999 Msa1063950:intron 30.0%
AAAAGTCCTAGAATGATTGA+AGG + chr7_2:56247112-56247131 Msa1063950:intron 30.0%
ATCGATGATTTGAATAATCG+AGG + chr7_2:56247195-56247214 Msa1063950:intron 30.0%
ATGATTTGAATAATCGAGGA+AGG + chr7_2:56247199-56247218 Msa1063950:intron 30.0%
TGTTTGAGCGATTATAAATC+AGG + chr7_2:56247323-56247342 Msa1063950:intron 30.0%
!! TATCTATGAAGCATTGATAC+TGG + chr7_2:56247360-56247379 Msa1063950:intron 30.0%
TTGAATGTAACTACACGTTT+CGG + chr7_2:56247423-56247442 Msa1063950:intron 30.0%
! AACCATAGGCAATTTTTGTT+GGG + chr7_2:56247640-56247659 Msa1063950:intron 30.0%
!! ATGCTCAGAAGTATTTCATT+AGG + chr7_2:56247746-56247765 Msa1063950:CDS 30.0%
AACTAAAGGAAACATGTTTG+TGG + chr7_2:56247993-56248012 Msa1063950:CDS 30.0%
TAGTATCAAAAGGTGAAAAC+TGG - chr7_2:56248095-56248114 None:intergenic 30.0%
TGTACTTTAACAGATTTGTG+AGG + chr7_2:56248305-56248324 Msa1063950:three_prime_UTR 30.0%
CATATAATTCCACTCTATGT+AGG - chr7_2:56248336-56248355 None:intergenic 30.0%
! TCTCTCAACTTTTTATGAGA+AGG + chr7_2:56248381-56248400 Msa1063950:three_prime_UTR 30.0%
ATGTACTAGAATAGAACTAG+TGG + chr7_2:56248465-56248484 Msa1063950:three_prime_UTR 30.0%
AGACAGTGATCTATGAAACA+GGG - chr7_2:56245834-56245853 None:intergenic 35.0%
AAGACAGTGATCTATGAAAC+AGG - chr7_2:56245835-56245854 None:intergenic 35.0%
TTGTGAAAGAAGAAGTGAAG+TGG - chr7_2:56245899-56245918 None:intergenic 35.0%
TGGAGTGAAATTAAGCAACT+GGG - chr7_2:56246061-56246080 None:intergenic 35.0%
TTGGAGTGAAATTAAGCAAC+TGG - chr7_2:56246062-56246081 None:intergenic 35.0%
!!! TGGATTTTTTCCTTGGAGTT+TGG + chr7_2:56246228-56246247 Msa1063950:five_prime_UTR 35.0%
TTCAGCTACCCAAATAACTA+AGG - chr7_2:56246276-56246295 None:intergenic 35.0%
ATTATCAAACAGCATTTGGG+TGG - chr7_2:56246317-56246336 None:intergenic 35.0%
AGAGAGATAAGCTACAAAAG+TGG - chr7_2:56246364-56246383 None:intergenic 35.0%
! GAATTTTGGATATAGGAAGC+TGG - chr7_2:56246486-56246505 None:intergenic 35.0%
! TAAGCTCTTTGAGAATGCTT+TGG + chr7_2:56246557-56246576 Msa1063950:CDS 35.0%
ATAAGGATACTCCTGATAGA+TGG + chr7_2:56246589-56246608 Msa1063950:CDS 35.0%
ATACTCCTGATAGATGGATA+AGG + chr7_2:56246595-56246614 Msa1063950:CDS 35.0%
TACTCCTGATAGATGGATAA+GGG + chr7_2:56246596-56246615 Msa1063950:CDS 35.0%
ATGATTCCTGGAAAAACTGT+TGG + chr7_2:56246627-56246646 Msa1063950:CDS 35.0%
AAAGAGCTAGTTGTATAACC+AGG - chr7_2:56246723-56246742 None:intergenic 35.0%
!! CTAGCTCTTTTACATTGGAT+TGG + chr7_2:56246733-56246752 Msa1063950:CDS 35.0%
!! TTCAAGCAGTTTTGTAGTGT+TGG + chr7_2:56246780-56246799 Msa1063950:CDS 35.0%
! CATCAGCCATATTAGTTCTT+TGG + chr7_2:56247058-56247077 Msa1063950:intron 35.0%
!! TGAATCACCGATTTACACTA+TGG - chr7_2:56247167-56247186 None:intergenic 35.0%
AGAGTCAGATATCAAATGCA+AGG - chr7_2:56247560-56247579 None:intergenic 35.0%
!! ATCCAGTGTTTTTGCTTCTT+TGG + chr7_2:56247584-56247603 Msa1063950:intron 35.0%
! CAACCATAGGCAATTTTTGT+TGG + chr7_2:56247639-56247658 Msa1063950:intron 35.0%
TTGTTGGGTCTGAAAAAGTA+TGG + chr7_2:56247655-56247674 Msa1063950:CDS 35.0%
TATTTCATTAGGCAGCTTTC+AGG + chr7_2:56247757-56247776 Msa1063950:CDS 35.0%
AAGTATCCATGATATCACAG+TGG + chr7_2:56247801-56247820 Msa1063950:CDS 35.0%
CTGGACAAATTATGATTCTG+TGG - chr7_2:56247910-56247929 None:intergenic 35.0%
! GAATCATAATTTGTCCAGCA+TGG + chr7_2:56247912-56247931 Msa1063950:CDS 35.0%
TTCACAAGAATCGAAATCAC+CGG + chr7_2:56248035-56248054 Msa1063950:CDS 35.0%
ATGTAGTTCCAATTCACTCA+TGG + chr7_2:56248415-56248434 Msa1063950:three_prime_UTR 35.0%
ACATAGTTCCATGAGTGAAT+TGG - chr7_2:56248426-56248445 None:intergenic 35.0%
TCACTCATGGAACTATGTAA+AGG + chr7_2:56248428-56248447 Msa1063950:three_prime_UTR 35.0%
TGAAAGAAAGAGAGAGAGAG+AGG - chr7_2:56245793-56245812 None:intergenic 40.0%
!!! GTGCTTTTTTCCAAACTCCA+AGG - chr7_2:56246241-56246260 None:intergenic 40.0%
! ACATCACCAACAGTTTTTCC+AGG - chr7_2:56246636-56246655 None:intergenic 40.0%
! GATGTGTGTGTTATTGAAGC+TGG + chr7_2:56246684-56246703 Msa1063950:CDS 40.0%
CTAGTTGTATAACCAGGAAC+TGG - chr7_2:56246717-56246736 None:intergenic 40.0%
! TTGGATTGGGATAACAGTGA+AGG + chr7_2:56246747-56246766 Msa1063950:CDS 40.0%
! TGGATTGGGATAACAGTGAA+GGG + chr7_2:56246748-56246767 Msa1063950:CDS 40.0%
!! AAGCAGTTTTGTAGTGTTGG+TGG + chr7_2:56246783-56246802 Msa1063950:CDS 40.0%
!!! AGCAGTTTTGTAGTGTTGGT+GGG + chr7_2:56246784-56246803 Msa1063950:CDS 40.0%
! GGCTGATGATTTTCAACTTC+AGG - chr7_2:56247046-56247065 None:intergenic 40.0%
ATCGAGGAAGGAAGAATCAT+TGG + chr7_2:56247211-56247230 Msa1063950:intron 40.0%
TACACGTTTCGGTTTCATGT+CGG + chr7_2:56247434-56247453 Msa1063950:intron 40.0%
GACTTCAGAGTTTAGACTGA+AGG - chr7_2:56247480-56247499 None:intergenic 40.0%
!! TCAGTCTAAACTCTGAAGTC+CGG + chr7_2:56247480-56247499 Msa1063950:intron 40.0%
AGCCAAAGAAGCAAAAACAC+TGG - chr7_2:56247589-56247608 None:intergenic 40.0%
GACCCAACAAAAATTGCCTA+TGG - chr7_2:56247645-56247664 None:intergenic 40.0%
! GGTCTGAAAAAGTATGGCAA+GGG + chr7_2:56247661-56247680 Msa1063950:CDS 40.0%
GATTGACCACTGTGATATCA+TGG - chr7_2:56247810-56247829 None:intergenic 40.0%
AAGTAACGATCCTTCTTCTC+TGG + chr7_2:56247858-56247877 Msa1063950:CDS 40.0%
GATTTGCAACCTTCACCAAA+TGG - chr7_2:56247885-56247904 None:intergenic 40.0%
AAATTCCTGCTTAACCATGC+TGG - chr7_2:56247929-56247948 None:intergenic 40.0%
TGGTTAAGCAGGAATTTGAC+TGG + chr7_2:56247932-56247951 Msa1063950:CDS 40.0%
GACTGGAAATTACCAGATGA+AGG + chr7_2:56247949-56247968 Msa1063950:CDS 40.0%
TCACAAGAATCGAAATCACC+GGG + chr7_2:56248036-56248055 Msa1063950:CDS 40.0%
TATGCAGCATCAATGAACTG+AGG + chr7_2:56248131-56248150 Msa1063950:exon 40.0%
AGAGAGAGAGAGAGGTCAAA+GGG - chr7_2:56245785-56245804 None:intergenic 45.0%
AAGAGAGAGAGAGAGGTCAA+AGG - chr7_2:56245786-56245805 None:intergenic 45.0%
GCAACCCTTATCCATCTATC+AGG - chr7_2:56246603-56246622 None:intergenic 45.0%
!! AGTGTTGGTGGGAAAAGAAG+TGG + chr7_2:56246795-56246814 Msa1063950:CDS 45.0%
GGAAAAGAAGTGGTTCGACT+CGG + chr7_2:56246805-56246824 Msa1063950:CDS 45.0%
! AAAGGAAGAAAGGTGTGCCA+TGG + chr7_2:56246841-56246860 Msa1063950:CDS 45.0%
TTTCGGTTTCATGTCGGCAT+TGG + chr7_2:56247440-56247459 Msa1063950:intron 45.0%
!! CAGTCTAAACTCTGAAGTCC+GGG + chr7_2:56247481-56247500 Msa1063950:intron 45.0%
!! AGTCTAAACTCTGAAGTCCG+GGG + chr7_2:56247482-56247501 Msa1063950:intron 45.0%
! GGGTCTGAAAAAGTATGGCA+AGG + chr7_2:56247660-56247679 Msa1063950:CDS 45.0%
! AAAAGTATGGCAAGGGAGAC+TGG + chr7_2:56247668-56247687 Msa1063950:CDS 45.0%
GAGACTGGAGAAACATCTCT+AGG + chr7_2:56247683-56247702 Msa1063950:CDS 45.0%
!! GACTTGAGTTGGTGTTCTTG+TGG - chr7_2:56247719-56247738 None:intergenic 45.0%
TTCATTAGGCAGCTTTCAGG+AGG + chr7_2:56247760-56247779 Msa1063950:CDS 45.0%
TCATTAGGCAGCTTTCAGGA+GGG + chr7_2:56247761-56247780 Msa1063950:CDS 45.0%
TTTCAGGAGGGAAGGATAAG+AGG + chr7_2:56247773-56247792 Msa1063950:CDS 45.0%
ACGAAGGCGGTTTCATTTCT+TGG - chr7_2:56247834-56247853 None:intergenic 45.0%
! TCGTTACTTTCTGACGAAGG+CGG - chr7_2:56247847-56247866 None:intergenic 45.0%
! GGATCGTTACTTTCTGACGA+AGG - chr7_2:56247850-56247869 None:intergenic 45.0%
TCCTTCTTCTCTGGACCATT+TGG + chr7_2:56247867-56247886 Msa1063950:CDS 45.0%
ACCAAATGGTCCAGAGAAGA+AGG - chr7_2:56247871-56247890 None:intergenic 45.0%
! TTCTCTGGACCATTTGGTGA+AGG + chr7_2:56247873-56247892 Msa1063950:CDS 45.0%
TTTGTCCAGCATGGTTAAGC+AGG + chr7_2:56247921-56247940 Msa1063950:CDS 45.0%
ACAAATGGCATGCCTTCATC+TGG - chr7_2:56247964-56247983 None:intergenic 45.0%
CACAAGAATCGAAATCACCG+GGG + chr7_2:56248037-56248056 Msa1063950:CDS 45.0%
GGTATCCATGATGAGTGCTT+CGG - chr7_2:56248074-56248093 None:intergenic 45.0%
GAGGATCTTCCTACATAGAG+TGG + chr7_2:56248324-56248343 Msa1063950:three_prime_UTR 45.0%
!! TATTAATAATTAATAAATTC+TGG + chr7_2:56246208-56246227 Msa1063950:five_prime_UTR 5.0%
CAAAGGGGCTGAGTTGTGAT+TGG - chr7_2:56245769-56245788 None:intergenic 50.0%
GAGAGAGAGAGAGGTCAAAG+GGG - chr7_2:56245784-56245803 None:intergenic 50.0%
AGGGTTGCTGAGATGATTCC+TGG + chr7_2:56246615-56246634 Msa1063950:CDS 50.0%
!! GCTGGTTTGATACCAGTTCC+TGG + chr7_2:56246702-56246721 Msa1063950:CDS 50.0%
TTCTTCCTTTCCTGCTCCGA+CGG - chr7_2:56246831-56246850 None:intergenic 50.0%
TCGGAGCAGGAAAGGAAGAA+AGG + chr7_2:56246831-56246850 Msa1063950:CDS 50.0%
CTATGCTCCTCTTCAGTCCA+TGG - chr7_2:56246861-56246880 None:intergenic 50.0%
! CATGGACTGAAGAGGAGCAT+AGG + chr7_2:56246859-56246878 Msa1063950:CDS 50.0%
! GCATGACTTGCGACTTGAGT+TGG - chr7_2:56247730-56247749 None:intergenic 50.0%
TGTGAAGAAATCCCGCACGA+CGG - chr7_2:56248021-56248040 None:intergenic 50.0%
CTTCGGAGTACATTATGCCC+CGG - chr7_2:56248057-56248076 None:intergenic 50.0%
! GTACTCCGAAGCACTCATCA+TGG + chr7_2:56248066-56248085 Msa1063950:CDS 50.0%
GCAGCATCAATGAACTGAGG+AGG + chr7_2:56248134-56248153 Msa1063950:exon 50.0%
AGGGGCTGAGTTGTGATTGG+TGG - chr7_2:56245766-56245785 None:intergenic 55.0%
! AGGTGTGCCATGGACTGAAG+AGG + chr7_2:56246851-56246870 Msa1063950:CDS 55.0%
TAGGCAGCTTTCAGGAGGGA+AGG + chr7_2:56247765-56247784 Msa1063950:CDS 55.0%
ATGTTTGTGGCACCGTCGTG+CGG + chr7_2:56248006-56248025 Msa1063950:CDS 55.0%
!! AAGTGGTTCGACTCGGCCGT+CGG + chr7_2:56246812-56246831 Msa1063950:CDS 60.0%
TGTTTGTGGCACCGTCGTGC+GGG + chr7_2:56248007-56248026 Msa1063950:CDS 60.0%
!! TTCGACTCGGCCGTCGGAGC+AGG + chr7_2:56246818-56246837 Msa1063950:CDS 70.0%
CTCGGCCGTCGGAGCAGGAA+AGG + chr7_2:56246823-56246842 Msa1063950:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 56245759 56248532 56245759 ID=Msa1063950;Name=Msa1063950
chr7_2 mRNA 56245759 56248532 56245759 ID=Msa1063950-mRNA-1;Parent=Msa1063950;Name=Msa1063950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=679|1|1|1|1|1|2|386|313
chr7_2 exon 56245759 56246880 56245759 ID=Msa1063950-mRNA-1:exon:10572;Parent=Msa1063950-mRNA-1
chr7_2 exon 56247648 56248532 56247648 ID=Msa1063950-mRNA-1:exon:10573;Parent=Msa1063950-mRNA-1
chr7_2 five_prime_UTR 56245759 56246437 56245759 ID=Msa1063950-mRNA-1:five_prime_utr;Parent=Msa1063950-mRNA-1
chr7_2 CDS 56246438 56246880 56246438 ID=Msa1063950-mRNA-1:cds;Parent=Msa1063950-mRNA-1
chr7_2 CDS 56247648 56248146 56247648 ID=Msa1063950-mRNA-1:cds;Parent=Msa1063950-mRNA-1
chr7_2 three_prime_UTR 56248147 56248532 56248147 ID=Msa1063950-mRNA-1:three_prime_utr;Parent=Msa1063950-mRNA-1
Gene Sequence

>Msa1063950

ATGATGTTATCTAGAACAATGAATAGAGGAGTTGAAGTTCTATCACCAGCTTCCTATATCCAAAATTCCAATTGGTTGTTTCAAGAAAACAATGGTTCAAAATTTACTTCAGAAGAGAATAAGCTCTTTGAGAATGCTTTGGCTTATTATGATAAGGATACTCCTGATAGATGGATAAGGGTTGCTGAGATGATTCCTGGAAAAACTGTTGGTGATGTGATTAAACAGTATAGGGAGCTTGAAGAAGATGTGTGTGTTATTGAAGCTGGTTTGATACCAGTTCCTGGTTATACAACTAGCTCTTTTACATTGGATTGGGATAACAGTGAAGGGTATGATGAGTTCAAGCAGTTTTGTAGTGTTGGTGGGAAAAGAAGTGGTTCGACTCGGCCGTCGGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAGCATAGGCAATTTTTGTTGGGTCTGAAAAAGTATGGCAAGGGAGACTGGAGAAACATCTCTAGGAATTTTGTGACCACAAGAACACCAACTCAAGTCGCAAGTCATGCTCAGAAGTATTTCATTAGGCAGCTTTCAGGAGGGAAGGATAAGAGGAGATCAAGTATCCATGATATCACAGTGGTCAATCTCCAAGAAATGAAACCGCCTTCGTCAGAAAGTAACGATCCTTCTTCTCTGGACCATTTGGTGAAGGTTGCAAATCAACCACAGAATCATAATTTGTCCAGCATGGTTAAGCAGGAATTTGACTGGAAATTACCAGATGAAGGCATGCCATTTGTTTTCAATTCAACTAAAGGAAACATGTTTGTGGCACCGTCGTGCGGGATTTCTTCACAAGAATCGAAATCACCGGGGCATAATGTACTCCGAAGCACTCATCATGGATACCAGTTTTCACCTTTTGATACTATTTTGCAAATGCAATCTATGCAGCATCAATGA

Protein sequence

>Msa1063950

MMLSRTMNRGVEVLSPASYIQNSNWLFQENNGSKFTSEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWDNSEGYDEFKQFCSVGGKRSGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITVVNLQEMKPPSSESNDPSSLDHLVKVANQPQNHNLSSMVKQEFDWKLPDEGMPFVFNSTKGNMFVAPSCGISSQESKSPGHNVLRSTHHGYQFSPFDTILQMQSMQHQ*