AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078650 MtrunA17_Chr1g0189371 96.450 507 13 2 1 503 1 506 0.0 992
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078650 AT5G16260.1 59.339 514 178 9 13 502 11 517 0.0 563

Find 155 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTTCAATTTCTGAATTA+TGG 0.084752 1_2:-56315406 Msa0078650:CDS
TTCAGTTGTTTCTTCCTTTA+TGG 0.114821 1_2:+56313360 None:intergenic
TTTGACTACCATATCTTATT+TGG 0.126095 1_2:-56309326 Msa0078650:three_prime_UTR
TGACAGTTGGTTTGAATTAA+AGG 0.162229 1_2:-56313113 Msa0078650:CDS
CTGGTAGCGCTTTGCCTTAT+GGG 0.205690 1_2:-56313492 Msa0078650:CDS
ATTTCAGAGCATTTCTTAAA+TGG 0.211617 1_2:-56315485 Msa0078650:intron
TCTGGTAGCGCTTTGCCTTA+TGG 0.229159 1_2:-56313493 Msa0078650:CDS
GTCTTCAATTTCTGAATTAT+GGG 0.244458 1_2:-56315405 Msa0078650:CDS
TTTCAAGGCCTGGACTTATT+AGG 0.251138 1_2:+56309488 None:intergenic
ATAAGTGGGATAAGAGTCTT+AGG 0.253904 1_2:-56314784 Msa0078650:CDS
GGCTCTAGCAATCCAACTTT+TGG 0.263833 1_2:-56311985 Msa0078650:CDS
AACTTCCTCTTCTTTCAAAA+AGG 0.285902 1_2:+56313456 None:intergenic
TGTATCATTGGAAAAGAAAA+AGG 0.296817 1_2:-56309376 Msa0078650:three_prime_UTR
AAAACGATGAATTCTGAAAA+TGG 0.309280 1_2:-56315774 Msa0078650:exon
CGTAGTAATCCATGAGCTTC+GGG 0.311556 1_2:+56309453 None:intergenic
TATTAGTTCTCTTGTATCAT+TGG 0.313605 1_2:-56309388 Msa0078650:three_prime_UTR
TCATCCTCAGGGTGTTGTTT+TGG 0.326001 1_2:-56310198 Msa0078650:CDS
GCCTGCAGTTGAAGACGAAT+TGG 0.327838 1_2:+56315361 None:intergenic
AAAATGGCAAAAGGAGATTA+AGG 0.329467 1_2:-56314927 Msa0078650:CDS
CTTATTAGGAACTGTGAATC+TGG 0.330266 1_2:+56309502 None:intergenic
GATGTTGGATGGTACGTTCT+TGG 0.346116 1_2:-56315627 Msa0078650:CDS
ATTGTCTTTGTCAGCTTGCT+TGG 0.355106 1_2:+56311736 None:intergenic
TTCGGTGGTGGTGGTGTAGT+AGG 0.376500 1_2:-56314875 Msa0078650:CDS
GTGTTATAATACTCATGATT+TGG 0.385876 1_2:+56309274 None:intergenic
AATACACATGTTTATGTCAC+TGG 0.389054 1_2:-56313088 Msa0078650:CDS
GGGGTTCTTGCAATATTTCA+AGG 0.390159 1_2:+56309473 None:intergenic
CAAGTGGAAGCTTCGGAATT+CGG 0.395495 1_2:-56314893 Msa0078650:CDS
CTTTCTGCTGAAATTTAGCC+AGG 0.400350 1_2:+56311916 None:intergenic
GGCATATAAGCGGGTTCCTC+AGG 0.404098 1_2:-56314762 Msa0078650:intron
TGTTTCTGCAACTTCCATAA+AGG 0.417508 1_2:-56313374 Msa0078650:CDS
AACTTGAAGGTGAATGAGTT+AGG 0.421155 1_2:-56309539 Msa0078650:exon
TCACCATCAGGCGGTGTTGA+AGG 0.424907 1_2:+56314836 None:intergenic
GCTAAGCGATTGGAGCAGTT+TGG 0.425973 1_2:-56309567 Msa0078650:CDS
ACGTAGTAATCCATGAGCTT+CGG 0.430518 1_2:+56309452 None:intergenic
ACTAGAAGAAGATGTTAAAG+AGG 0.441572 1_2:-56310465 Msa0078650:CDS
GTAAATTCTTCTTCACCATC+AGG 0.442135 1_2:+56314824 None:intergenic
GTTAAATTCAAGGACAGAAA+AGG 0.445666 1_2:-56310176 Msa0078650:CDS
TAATTAACCATGCCACAGTC+CGG 0.453104 1_2:-56309605 Msa0078650:CDS
ATTTGGAAAATTGCGACATT+CGG 0.457076 1_2:-56309309 Msa0078650:three_prime_UTR
ATCTTATCACCAGGCCGAAA+AGG 0.458485 1_2:+56311954 None:intergenic
GAAGACGAATTGGGTCTTTG+AGG 0.461752 1_2:+56315371 None:intergenic
AAGACGAATTGGGTCTTTGA+GGG 0.462016 1_2:+56315372 None:intergenic
AATTAAACCATCGTCTTCAC+TGG 0.462591 1_2:+56309623 None:intergenic
TGATAGGAGGAGGCCACGTC+TGG 0.466721 1_2:-56313511 Msa0078650:intron
ACTACCTTGACTGCATCTAT+AGG 0.470187 1_2:+56310425 None:intergenic
TAGCGAAGGACAACAGTTGT+TGG 0.472530 1_2:+56310865 None:intergenic
TGAGGCGCAAGTGGAAGCTT+CGG 0.475916 1_2:-56314900 Msa0078650:CDS
GTCATCTCTTCAACCCCATA+AGG 0.479721 1_2:+56313478 None:intergenic
CCCAATTCGTCTTCAACTGC+AGG 0.480056 1_2:-56315362 Msa0078650:intron
CACAATCAACCGCAACCTAC+TGG 0.481272 1_2:-56315741 Msa0078650:intron
AAAGAGGAATGCACGAAGCT+TGG 0.484045 1_2:-56310449 Msa0078650:CDS
CAGTAGGTTGCGGTTGATTG+TGG 0.484700 1_2:+56315742 None:intergenic
TTTAATTCAAACCAACTGTC+AGG 0.485198 1_2:+56313115 None:intergenic
GGTTTATTTATCAGGTTTGG+TGG 0.486619 1_2:-56309660 Msa0078650:intron
CTCTATGTTGATAAAGAGAC+AGG 0.489825 1_2:-56312136 Msa0078650:CDS
GGTATGTGATAATCATCCTC+AGG 0.490183 1_2:-56310210 Msa0078650:CDS
AAGGCGCACCATCCAAAAGT+TGG 0.491090 1_2:+56311973 None:intergenic
CCTGCAGTTGAAGACGAATT+GGG 0.491725 1_2:+56315362 None:intergenic
CCATGGAACATTAACGCCAT+TGG 0.492816 1_2:-56309088 Msa0078650:three_prime_UTR
GATTCCGATGTCTGTCTCCC+TGG 0.495254 1_2:-56311934 Msa0078650:CDS
TCTTGCAATATTTCAAGGCC+TGG 0.496929 1_2:+56309478 None:intergenic
GCTTCGGAATTCGGTGGTGG+TGG 0.497213 1_2:-56314884 Msa0078650:CDS
CAAGTATGGAATTATAAAAG+AGG 0.501539 1_2:-56312943 Msa0078650:intron
AATTTAATTAGTAGTCGAAT+GGG 0.502642 1_2:-56309218 Msa0078650:three_prime_UTR
TGGAAGACAAAATGCTTGGA+TGG 0.504268 1_2:-56311688 Msa0078650:CDS
AATACCAGTGTGGTAGCTGT+TGG 0.507660 1_2:-56313331 Msa0078650:CDS
GAATGCTAATCTCACATCAC+AGG 0.509001 1_2:+56309054 None:intergenic
AATTAACCATGCCACAGTCC+GGG 0.512168 1_2:-56309604 Msa0078650:CDS
CCTCTCGCCCGTGCGTGGAT+CGG 0.515772 1_2:+56315894 None:intergenic
CTAATAAACCTCCTGACAGT+TGG 0.516022 1_2:-56313126 Msa0078650:CDS
ATACCAGTGTGGTAGCTGTT+GGG 0.517744 1_2:-56313330 Msa0078650:CDS
TAAGGAGGCTGAGGCGCAAG+TGG 0.518541 1_2:-56314909 Msa0078650:CDS
TGCAAGAACCCCGAAGCTCA+TGG 0.518989 1_2:-56309462 Msa0078650:three_prime_UTR
GAATTTAATTAGTAGTCGAA+TGG 0.519758 1_2:-56309219 Msa0078650:three_prime_UTR
ACGTTCCTCTCGCCCGTGCG+TGG 0.520312 1_2:+56315889 None:intergenic
GAAGAATTTACTGATGATGA+TGG 0.523794 1_2:-56314812 Msa0078650:CDS
AGATAAACCTGAAGAAAAGA+AGG 0.526119 1_2:-56313293 Msa0078650:intron
CAAGGACAGAAAAGGTGCTC+AGG 0.526794 1_2:-56310168 Msa0078650:CDS
CAGTTTGGTGAGGAACTTGA+AGG 0.531731 1_2:-56309552 Msa0078650:CDS
GGTGAAAATGTCGCAGATGT+TGG 0.532231 1_2:-56315642 Msa0078650:CDS
ATATCAACCCTCATTTCAGC+AGG 0.537601 1_2:+56310832 None:intergenic
TCATCAATAGTAACATCCTC+AGG 0.539668 1_2:+56313061 None:intergenic
TGCACCTCAGAGAAGACATA+AGG 0.541988 1_2:+56315582 None:intergenic
GTGTGGTAGCTGTTGGGAAG+AGG 0.542110 1_2:-56313324 Msa0078650:CDS
TGTTCAGTCCTGCTGAAATG+AGG 0.543568 1_2:-56310840 Msa0078650:CDS
AGAGGAAGATGCTAAGCGAT+TGG 0.545342 1_2:-56309577 Msa0078650:CDS
GGAAGACAAAATGCTTGGAT+GGG 0.546076 1_2:-56311687 Msa0078650:CDS
CTGGCTAAATTTCAGCAGAA+AGG 0.546970 1_2:-56311915 Msa0078650:intron
TATACTGTTGCATTAGATGA+TGG 0.551989 1_2:-56309174 Msa0078650:three_prime_UTR
TAGCATCTTCCTCTAGATCC+CGG 0.556991 1_2:+56309586 None:intergenic
TGGTAGCGCTTTGCCTTATG+GGG 0.557580 1_2:-56313491 Msa0078650:CDS
GAAGCTTCGGAATTCGGTGG+TGG 0.562716 1_2:-56314887 Msa0078650:CDS
GAGTCTTAGGGCATATAAGC+GGG 0.570694 1_2:-56314771 Msa0078650:CDS
CCAATGGCGTTAATGTTCCA+TGG 0.573495 1_2:+56309088 None:intergenic
AAGAATTTACTGATGATGAT+GGG 0.578013 1_2:-56314811 Msa0078650:CDS
AAGTTGGAAGACAAAATGCT+TGG 0.578949 1_2:-56311692 Msa0078650:CDS
ATGATGATGGGACATATAAG+TGG 0.580341 1_2:-56314799 Msa0078650:CDS
CTAGATCCCGGACTGTGGCA+TGG 0.581437 1_2:+56309598 None:intergenic
TAGAATTGATGAATGGAAGA+TGG 0.583366 1_2:-56310139 Msa0078650:intron
GCATCAGAATCAGTTACTAT+CGG 0.583746 1_2:+56313430 None:intergenic
CCGATCCACGCACGGGCGAG+AGG 0.583798 1_2:-56315894 Msa0078650:five_prime_UTR
TAGCGTGTACCAGTAGGTTG+CGG 0.584652 1_2:+56315732 None:intergenic
TCACAGTTCCTAATAAGTCC+AGG 0.585329 1_2:-56309496 Msa0078650:three_prime_UTR
AAAGGAGATTAAGGAGGCTG+AGG 0.585827 1_2:-56314918 Msa0078650:CDS
TGCATTGGTTACATATCTCA+AGG 0.589361 1_2:-56312098 Msa0078650:intron
ATACACATGTTTATGTCACT+GGG 0.589425 1_2:-56313087 Msa0078650:CDS
AATTGTAGCCGATCCACGCA+CGG 0.590738 1_2:-56315902 None:intergenic
AAGCTGACAAAGACAATAGA+CGG 0.593819 1_2:-56311730 Msa0078650:CDS
GCGTGCATAGAATTGATGAA+TGG 0.595667 1_2:-56310146 Msa0078650:CDS
TATGTCTTCTCTGAGGTGCA+AGG 0.604699 1_2:-56315579 Msa0078650:intron
GAAGACAAAATGCTTGGATG+GGG 0.605978 1_2:-56311686 Msa0078650:intron
GCGATTGGAGCAGTTTGGTG+AGG 0.606680 1_2:-56309562 Msa0078650:CDS
AGGCAAAGCGCTACCAGACG+TGG 0.611672 1_2:+56313498 None:intergenic
GGAGAGAATCAACAACAACT+TGG 0.615030 1_2:-56315606 Msa0078650:CDS
ATTGTAGCCGATCCACGCAC+GGG 0.615763 1_2:-56315901 None:intergenic
GACATCGGAATCTTATCACC+AGG 0.616948 1_2:+56311945 None:intergenic
AATTCAGAAATTGAAGACAA+AGG 0.617573 1_2:+56315410 None:intergenic
TGGATTGCTAGAGCCACTGA+TGG 0.618240 1_2:+56311993 None:intergenic
AGACCTTCAACACCGCCTGA+TGG 0.618261 1_2:-56314839 Msa0078650:CDS
TTATGCTGAGGCTGAAGATG+TGG 0.619425 1_2:-56314960 Msa0078650:CDS
TGGACCTATAGATGCAGTCA+AGG 0.623091 1_2:-56310429 Msa0078650:intron
TTGTTATGTAGTTTATGCTG+AGG 0.623808 1_2:-56314972 Msa0078650:intron
TTCCTCTAGATCCCGGACTG+TGG 0.624191 1_2:+56309593 None:intergenic
TGCCACAGTCCGGGATCTAG+AGG 0.625882 1_2:-56309595 Msa0078650:CDS
TGGTCCTTATGTCTTCTCTG+AGG 0.627862 1_2:-56315586 Msa0078650:CDS
ATCAACATAGAGCTTAACAC+GGG 0.630935 1_2:+56312147 None:intergenic
AATTCAAACCAACTGTCAGG+AGG 0.631486 1_2:+56313118 None:intergenic
TATTCGCTACAGTGGCAGCA+AGG 0.632781 1_2:+56315819 None:intergenic
TTATGTCACTGGGTTGCCTG+AGG 0.633023 1_2:-56313077 Msa0078650:CDS
GTTCAGTCCTGCTGAAATGA+GGG 0.634321 1_2:-56310839 Msa0078650:intron
AGAGTCTTAGGGCATATAAG+CGG 0.635019 1_2:-56314772 Msa0078650:CDS
TCGTCGTCTCTAGAAACCAC+GGG 0.636897 1_2:-56315867 Msa0078650:five_prime_UTR
TGTATATCAGGAACCATCAG+TGG 0.638535 1_2:-56312006 Msa0078650:intron
ACAGGGTCAATCAACACCAA+TGG 0.642531 1_2:+56309072 None:intergenic
AAAATGTCGCAGATGTTGGA+TGG 0.645277 1_2:-56315638 Msa0078650:CDS
TAAGTGGGATAAGAGTCTTA+GGG 0.645357 1_2:-56314783 Msa0078650:CDS
TTTCTGCTGAAATTTAGCCA+GGG 0.652648 1_2:+56311917 None:intergenic
AAGCAATGAAAGAGTGCCCG+TGG 0.655749 1_2:+56315851 None:intergenic
CTTCCCAACAGCTACCACAC+TGG 0.656887 1_2:+56313327 None:intergenic
CAGGACTGAACATATAGCGA+AGG 0.659719 1_2:+56310851 None:intergenic
GTATGTGATAATCATCCTCA+GGG 0.661661 1_2:-56310209 Msa0078650:CDS
GTCGTCGTCTCTAGAAACCA+CGG 0.668195 1_2:-56315868 Msa0078650:five_prime_UTR
AATGCTAATCTCACATCACA+GGG 0.669904 1_2:+56309055 None:intergenic
TGGGTTTCTATTCGCTACAG+TGG 0.670571 1_2:+56315811 None:intergenic
GGTCTGAAGGAAGAACTGAA+TGG 0.672653 1_2:-56315436 Msa0078650:CDS
GTGGAAGCTTCGGAATTCGG+TGG 0.675726 1_2:-56314890 Msa0078650:CDS
TTAGCCAGGGAGACAGACAT+CGG 0.680304 1_2:+56311930 None:intergenic
ATGGCAAAAGGAGATTAAGG+AGG 0.680476 1_2:-56314924 Msa0078650:CDS
AATTCTTCTTCACCATCAGG+CGG 0.682237 1_2:+56314827 None:intergenic
TATCAACATAGAGCTTAACA+CGG 0.691544 1_2:+56312146 None:intergenic
TGATGATGGGACATATAAGT+GGG 0.715635 1_2:-56314798 Msa0078650:CDS
TTAACCAAAACAACACCCTG+AGG 0.735800 1_2:+56310194 None:intergenic
GTAGTAATCCATGAGCTTCG+GGG 0.736991 1_2:+56309454 None:intergenic
ATACATGCCAGTGAAGACGA+TGG 0.748904 1_2:-56309630 Msa0078650:CDS
TCAACATAGAGCTTAACACG+GGG 0.786913 1_2:+56312148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATTTATTTGCTTT+TGG - chr1_2:56309889-56309908 Msa0078650:intron 10.0%
!!! TTTTAAATTTATTTGCTTTT+GGG - chr1_2:56309890-56309909 Msa0078650:intron 10.0%
!! TAAAATTAATACTTTATGTT+TGG - chr1_2:56310633-56310652 Msa0078650:intron 10.0%
!!! TACTTTTCTTTTTTAAATTA+CGG + chr1_2:56311107-56311126 None:intergenic 10.0%
!! AAAAAAAAAAGTTCATTATT+AGG - chr1_2:56312631-56312650 Msa0078650:intron 10.0%
!! AATCTATATTAAATGAAAAA+GGG + chr1_2:56313351-56313370 None:intergenic 10.0%
!! AAATCTATATTAAATGAAAA+AGG + chr1_2:56313352-56313371 None:intergenic 10.0%
!!! TTTGTTATTATTATTTACTG+TGG - chr1_2:56309916-56309935 Msa0078650:intron 15.0%
!! TATTATGATTAACATAAGAT+AGG - chr1_2:56310255-56310274 Msa0078650:intron 15.0%
!! GATTATAAAATTGATAGAAA+AGG + chr1_2:56311207-56311226 None:intergenic 15.0%
!!! TTTTATAATCAAAACTTTGA+TGG - chr1_2:56311217-56311236 Msa0078650:intron 15.0%
!! TTTCAATAAAATAAAACCTA+GGG + chr1_2:56311313-56311332 None:intergenic 15.0%
!!! TGTTTTTCTATTTTTTCTTT+TGG - chr1_2:56311372-56311391 Msa0078650:intron 15.0%
!!! GTTTTTCTATTTTTTCTTTT+GGG - chr1_2:56311373-56311392 Msa0078650:intron 15.0%
!!! GTTCATCTTATTTATATAAA+TGG - chr1_2:56311674-56311693 Msa0078650:intron 15.0%
!!! AAATATAACAGATACTTTTA+AGG + chr1_2:56312099-56312118 None:intergenic 15.0%
!! GTATCTGTTATATTTAATTA+AGG - chr1_2:56312104-56312123 Msa0078650:CDS 15.0%
!!! TGATAATATGCAATATATTT+TGG + chr1_2:56312196-56312215 None:intergenic 15.0%
!! AAATCCTCATAAAAAATATA+TGG + chr1_2:56312283-56312302 None:intergenic 15.0%
!!! ATATATTTTTTATGAGGATT+TGG - chr1_2:56312282-56312301 Msa0078650:intron 15.0%
!! GATATACACAAATATATAAT+TGG + chr1_2:56312911-56312930 None:intergenic 15.0%
!! ATTATATATTTGTGTATATC+AGG - chr1_2:56312911-56312930 Msa0078650:intron 15.0%
!! ATCTATATTAAATGAAAAAG+GGG + chr1_2:56313350-56313369 None:intergenic 15.0%
!!! TTACTTTTAACAATTATAGT+AGG - chr1_2:56314308-56314327 Msa0078650:intron 15.0%
!!! TCAATTACATTAATCTTTTA+AGG + chr1_2:56314542-56314561 None:intergenic 15.0%
!! TTAATTTCAACATAAACACA+GGG + chr1_2:56309396-56309415 None:intergenic 20.0%
!!! TTTAATTTCAACATAAACAC+AGG + chr1_2:56309397-56309416 None:intergenic 20.0%
!!! ATAAAAGTGTATTTTCTGAT+AGG + chr1_2:56309473-56309492 None:intergenic 20.0%
!!! TATCAGAAAATACACTTTTA+TGG - chr1_2:56309472-56309491 Msa0078650:three_prime_UTR 20.0%
!!! AAAAGTTAAGCTTTAATTCA+TGG + chr1_2:56309846-56309865 None:intergenic 20.0%
!! GTTTCAATAAAATAAAACCT+AGG + chr1_2:56311314-56311333 None:intergenic 20.0%
!!! GTTTTATTTTATTGAAACCA+AGG - chr1_2:56311316-56311335 Msa0078650:intron 20.0%
!! TAATGAAATTGTTATGTGAT+AGG - chr1_2:56311402-56311421 Msa0078650:intron 20.0%
!! AAAGATGAGAAAAAATAAGT+GGG + chr1_2:56311706-56311725 None:intergenic 20.0%
!! AAAGGAATATAGGAATAAAA+AGG + chr1_2:56312014-56312033 None:intergenic 20.0%
!!! TTGATTTTACAATTCAACAA+AGG + chr1_2:56312032-56312051 None:intergenic 20.0%
!! AAAATCAAACTATAATGCTT+AGG - chr1_2:56312044-56312063 Msa0078650:intron 20.0%
!! TATAATGCTTAGGTATATAT+CGG - chr1_2:56312054-56312073 Msa0078650:intron 20.0%
!! AAAAAAAGTTCATTATTAGG+TGG - chr1_2:56312634-56312653 Msa0078650:intron 20.0%
!!! AGTGTTTTTATAATTGTACT+TGG - chr1_2:56313070-56313089 Msa0078650:CDS 20.0%
!! AAAATCAACTTGAATAAAGT+TGG + chr1_2:56313281-56313300 None:intergenic 20.0%
!!! TTTATTCAAGTTGATTTTTC+AGG - chr1_2:56313283-56313302 Msa0078650:intron 20.0%
!! AGATGCAAAAATTGATATAA+AGG + chr1_2:56313616-56313635 None:intergenic 20.0%
!! AGATTCATATTTCATAAGTT+AGG - chr1_2:56313683-56313702 Msa0078650:intron 20.0%
!!! TATGTTTAGTTTAGAGTTTT+TGG - chr1_2:56313920-56313939 Msa0078650:intron 20.0%
!! AGAAAAAAAATCCTGAAAAT+AGG + chr1_2:56314593-56314612 None:intergenic 20.0%
!! ATGACAAAAGTTAATATTCT+CGG + chr1_2:56315240-56315259 None:intergenic 20.0%
!! GAAAAGAAAAAGGAAATTAT+AGG - chr1_2:56315563-56315582 Msa0078650:intron 20.0%
!! AATTTAATTAGTAGTCGAAT+GGG - chr1_2:56315711-56315730 Msa0078650:intron 20.0%
!! AAAACGATGAATTCTGAAAA+TGG - chr1_2:56309155-56309174 Msa0078650:three_prime_UTR 25.0%
!! ATTTCAGAGCATTTCTTAAA+TGG - chr1_2:56309444-56309463 Msa0078650:three_prime_UTR 25.0%
! AATTCAGAAATTGAAGACAA+AGG + chr1_2:56309522-56309541 None:intergenic 25.0%
! TGTCTTCAATTTCTGAATTA+TGG - chr1_2:56309523-56309542 Msa0078650:three_prime_UTR 25.0%
! GTCTTCAATTTCTGAATTAT+GGG - chr1_2:56309524-56309543 Msa0078650:three_prime_UTR 25.0%
! ATCTAACAGATATGATTGAT+TGG - chr1_2:56309800-56309819 Msa0078650:intron 25.0%
! ATTATTATTTACTGTGGACT+TGG - chr1_2:56309922-56309941 Msa0078650:intron 25.0%
!! AAGAATTTACTGATGATGAT+GGG - chr1_2:56310118-56310137 Msa0078650:intron 25.0%
!!! TTAACTAAATTTTGATGCCT+AGG - chr1_2:56310286-56310305 Msa0078650:intron 25.0%
! GCATAATAGTTAAAACTCTA+AGG + chr1_2:56310342-56310361 None:intergenic 25.0%
! ACCTGATTTATTGAATACAT+TGG - chr1_2:56310418-56310437 Msa0078650:intron 25.0%
! ACCAATGTATTCAATAAATC+AGG + chr1_2:56310422-56310441 None:intergenic 25.0%
!!! TCTTGTTTTAGATTTTGCAT+AGG - chr1_2:56310457-56310476 Msa0078650:CDS 25.0%
!!! AGTTACTAGTTAGTTTGTTA+CGG + chr1_2:56310596-56310615 None:intergenic 25.0%
!!! AGATTTTTTGAGAACTAGTT+TGG + chr1_2:56310856-56310875 None:intergenic 25.0%
!!! AAGTCCGAAACAATTTTTTT+AGG - chr1_2:56310910-56310929 Msa0078650:intron 25.0%
!!! AGTCCGAAACAATTTTTTTA+GGG - chr1_2:56310911-56310930 Msa0078650:intron 25.0%
! ACACCCTAAAAAAATTGTTT+CGG + chr1_2:56310917-56310936 None:intergenic 25.0%
! ATATGGATACATTTCCTTAA+GGG + chr1_2:56311174-56311193 None:intergenic 25.0%
! TTAAGGAAATGTATCCATAT+GGG - chr1_2:56311174-56311193 Msa0078650:intron 25.0%
!! ACTATCTTCAACAATTTTTG+AGG + chr1_2:56311524-56311543 None:intergenic 25.0%
! TAAATAAGATGAACAGATAG+CGG + chr1_2:56311668-56311687 None:intergenic 25.0%
! AAGATGAGAAAAAATAAGTG+GGG + chr1_2:56311705-56311724 None:intergenic 25.0%
! CAAAGATGAGAAAAAATAAG+TGG + chr1_2:56311707-56311726 None:intergenic 25.0%
! CAATGAATATAAGTAGTTTC+AGG + chr1_2:56311922-56311941 None:intergenic 25.0%
! CTGAAACTACTTATATTCAT+TGG - chr1_2:56311920-56311939 Msa0078650:CDS 25.0%
! ATTCATTGGAAAAACTAACA+TGG - chr1_2:56311934-56311953 Msa0078650:CDS 25.0%
! TTCATTGGAAAAACTAACAT+GGG - chr1_2:56311935-56311954 Msa0078650:CDS 25.0%
!! CTCTTTTATAATTCCATACT+TGG + chr1_2:56311988-56312007 None:intergenic 25.0%
! CAAGTATGGAATTATAAAAG+AGG - chr1_2:56311986-56312005 Msa0078650:CDS 25.0%
! ACAATTCAACAAAGGAATAT+AGG + chr1_2:56312024-56312043 None:intergenic 25.0%
!!! TATATCGGTTTTTCATGTTT+AGG - chr1_2:56312069-56312088 Msa0078650:intron 25.0%
! TTAATTAAGGAAAACACAGT+CGG - chr1_2:56312117-56312136 Msa0078650:CDS 25.0%
! AAAGTATATTGCCAAAAGTA+TGG - chr1_2:56312146-56312165 Msa0078650:CDS 25.0%
!! GAAATGTTAATCCATACTTT+TGG + chr1_2:56312160-56312179 None:intergenic 25.0%
!!! ATCACATGAAAGCATTTAAA+AGG + chr1_2:56312226-56312245 None:intergenic 25.0%
!!! ATGGCCATATATTTTTTATG+AGG - chr1_2:56312276-56312295 Msa0078650:intron 25.0%
! TATAATACACCAAAAATGGT+GGG + chr1_2:56312481-56312500 None:intergenic 25.0%
!!! AACTAAACTATGATTTTGAC+AGG + chr1_2:56313110-56313129 None:intergenic 25.0%
! GAAAAAGAAAACGAAAAAGT+TGG - chr1_2:56313221-56313240 Msa0078650:intron 25.0%
! GCTAAAATTAAGATGAATTG+GGG + chr1_2:56313321-56313340 None:intergenic 25.0%
! GGCTAAAATTAAGATGAATT+GGG + chr1_2:56313322-56313341 None:intergenic 25.0%
! AGGCTAAAATTAAGATGAAT+TGG + chr1_2:56313323-56313342 None:intergenic 25.0%
! TTAAATGAAAAAGGGGAATT+AGG + chr1_2:56313343-56313362 None:intergenic 25.0%
! TTGGAAAAATATCTACAAGA+AGG + chr1_2:56313376-56313395 None:intergenic 25.0%
!! TATTTTTCCAATTTACCAGA+TGG - chr1_2:56313385-56313404 Msa0078650:CDS 25.0%
! ACATTTCCATAAATACTGAT+AGG - chr1_2:56313527-56313546 Msa0078650:intron 25.0%
!! TCTTTTCCTATCAGTATTTA+TGG + chr1_2:56313536-56313555 None:intergenic 25.0%
! AACTAAACATAAATCTGAGA+TGG + chr1_2:56313911-56313930 None:intergenic 25.0%
!!! TTTAGAGTTTTTGGATGATT+TGG - chr1_2:56313929-56313948 Msa0078650:intron 25.0%
!! CTAATGTGATTTTCATTGTA+TGG - chr1_2:56314007-56314026 Msa0078650:intron 25.0%
! TATAACCAAATCCAAAATGA+TGG + chr1_2:56314194-56314213 None:intergenic 25.0%
! TAATATTGCTTAATCTGTTC+AGG - chr1_2:56314419-56314438 Msa0078650:intron 25.0%
! AAAATCCTGAAAATAGGATA+TGG + chr1_2:56314587-56314606 None:intergenic 25.0%
!!! TGTTGTTTTGGTTAAATTCA+AGG - chr1_2:56314743-56314762 Msa0078650:intron 25.0%
! ATAATGACTAAAACAAGATC+TGG + chr1_2:56314949-56314968 None:intergenic 25.0%
!!! TATTTTAATAGCACCTAAAC+TGG + chr1_2:56314976-56314995 None:intergenic 25.0%
!!! AATAGTAACGTAACTTGTTT+TGG - chr1_2:56314992-56315011 Msa0078650:intron 25.0%
!!! AAACAATCATTTTTCCTTGT+GGG - chr1_2:56315079-56315098 Msa0078650:intron 25.0%
! TTACAGTGTTACAATGAAAT+TGG - chr1_2:56315140-56315159 Msa0078650:intron 25.0%
! TGACAAAAGTTAATATTCTC+GGG + chr1_2:56315239-56315258 None:intergenic 25.0%
!!! AACTTTTGTCATACTTTTTC+TGG - chr1_2:56315248-56315267 Msa0078650:intron 25.0%
!!! CTTTTTCTGGTTTATTTATC+AGG - chr1_2:56315261-56315280 Msa0078650:intron 25.0%
!! TATTAGTTCTCTTGTATCAT+TGG - chr1_2:56315541-56315560 Msa0078650:intron 25.0%
! TGTATCATTGGAAAAGAAAA+AGG - chr1_2:56315553-56315572 Msa0078650:intron 25.0%
! AAGAAAAAGGAAATTATAGG+AGG - chr1_2:56315566-56315585 Msa0078650:intron 25.0%
! TTTGACTACCATATCTTATT+TGG - chr1_2:56315603-56315622 Msa0078650:CDS 25.0%
!! GCAATTTTCCAAATAAGATA+TGG + chr1_2:56315614-56315633 None:intergenic 25.0%
! GTGTTATAATACTCATGATT+TGG + chr1_2:56315658-56315677 None:intergenic 25.0%
! GAATTTAATTAGTAGTCGAA+TGG - chr1_2:56315710-56315729 Msa0078650:intron 25.0%
! TTCAGAATTCATCGTTTTCT+TGG + chr1_2:56309153-56309172 None:intergenic 30.0%
AGTTAAAACAGAAATTGCTG+CGG + chr1_2:56309253-56309272 None:intergenic 30.0%
!! CTCTGAAATGTAAATTAGCA+AGG + chr1_2:56309433-56309452 None:intergenic 30.0%
! AATACACTTTTATGGTCTGA+AGG - chr1_2:56309480-56309499 Msa0078650:three_prime_UTR 30.0%
! GATTTGAAATCTGTATCTTG+AGG - chr1_2:56309699-56309718 Msa0078650:intron 30.0%
TTGTTATGTAGTTTATGCTG+AGG - chr1_2:56309957-56309976 Msa0078650:intron 30.0%
AAAATGGCAAAAGGAGATTA+AGG - chr1_2:56310002-56310021 Msa0078650:intron 30.0%
! GAAGAATTTACTGATGATGA+TGG - chr1_2:56310117-56310136 Msa0078650:intron 30.0%
!! AAATTTTGATGCCTAGGATT+TGG - chr1_2:56310292-56310311 Msa0078650:intron 30.0%
!! AATTTTGATGCCTAGGATTT+GGG - chr1_2:56310293-56310312 Msa0078650:intron 30.0%
!!! TACATTGGTTTTGAAATGAC+AGG - chr1_2:56310433-56310452 Msa0078650:CDS 30.0%
!!! AGGGAAATTTTTAGCAATAG+GGG + chr1_2:56310569-56310588 None:intergenic 30.0%
!!! GAGGGAAATTTTTAGCAATA+GGG + chr1_2:56310570-56310589 None:intergenic 30.0%
CAAAAAGACACTGCTATAAA+GGG - chr1_2:56310880-56310899 Msa0078650:CDS 30.0%
!!! CAATTTTTTTAGGGTGTGTT+TGG - chr1_2:56310920-56310939 Msa0078650:intron 30.0%
CATATGGATACATTTCCTTA+AGG + chr1_2:56311175-56311194 None:intergenic 30.0%
CTTAAGGAAATGTATCCATA+TGG - chr1_2:56311173-56311192 Msa0078650:intron 30.0%
GAAAAGGAAATATTCCCATA+TGG + chr1_2:56311191-56311210 None:intergenic 30.0%
GTATTAATCTCAATTTCCCT+AGG - chr1_2:56311294-56311313 Msa0078650:intron 30.0%
TGAAATTGTTATGTGATAGG+AGG - chr1_2:56311405-56311424 Msa0078650:intron 30.0%
AACTTCCTCTTCTTTCAAAA+AGG + chr1_2:56311476-56311495 None:intergenic 30.0%
!! TTCAGTTGTTTCTTCCTTTA+TGG + chr1_2:56311572-56311591 None:intergenic 30.0%
AGATAAACCTGAAGAAAAGA+AGG - chr1_2:56311636-56311655 Msa0078650:intron 30.0%
! TTAGAAATGAGTACCTCTTT+TGG - chr1_2:56311737-56311756 Msa0078650:CDS 30.0%
! TAGAAATGAGTACCTCTTTT+GGG - chr1_2:56311738-56311757 Msa0078650:CDS 30.0%
! TGTCATTTATTTCCCAAAAG+AGG + chr1_2:56311753-56311772 None:intergenic 30.0%
TTTAATTCAAACCAACTGTC+AGG + chr1_2:56311817-56311836 None:intergenic 30.0%
!! TGACAGTTGGTTTGAATTAA+AGG - chr1_2:56311816-56311835 Msa0078650:intron 30.0%
AATACACATGTTTATGTCAC+TGG - chr1_2:56311841-56311860 Msa0078650:intron 30.0%
ATACACATGTTTATGTCACT+GGG - chr1_2:56311842-56311861 Msa0078650:intron 30.0%
TGGATTAACATTTCTACACA+TGG - chr1_2:56312166-56312185 Msa0078650:CDS 30.0%
!!! GTGTTATTTATTTTCGGTCA+GGG + chr1_2:56312348-56312367 None:intergenic 30.0%
!!! TGTGTTATTTATTTTCGGTC+AGG + chr1_2:56312349-56312368 None:intergenic 30.0%
GACCGAAAATAAATAACACA+AGG - chr1_2:56312349-56312368 Msa0078650:intron 30.0%
!!! GGCCTTGTGTTATTTATTTT+CGG + chr1_2:56312354-56312373 None:intergenic 30.0%
TGTCTTGCCAAAGATTAAAA+GGG - chr1_2:56312407-56312426 Msa0078650:intron 30.0%
GTATAATACACCAAAAATGG+TGG + chr1_2:56312482-56312501 None:intergenic 30.0%
TGCGTATAATACACCAAAAA+TGG + chr1_2:56312485-56312504 None:intergenic 30.0%
TATCAACATAGAGCTTAACA+CGG + chr1_2:56312786-56312805 None:intergenic 30.0%
TAAAGAGACAGGAAGAAAAA+AGG - chr1_2:56312804-56312823 Msa0078650:intron 30.0%
AAAGAGACAGGAAGAAAAAA+GGG - chr1_2:56312805-56312824 Msa0078650:intron 30.0%
!! TAAACTATGATTTTGACAGG+TGG + chr1_2:56313107-56313126 None:intergenic 30.0%
TATTTAAAGAAAGCTCCATC+AGG + chr1_2:56313153-56313172 None:intergenic 30.0%
ATTTACACCATCTGGTAAAT+TGG + chr1_2:56313395-56313414 None:intergenic 30.0%
AATTTACCAGATGGTGTAAA+TGG - chr1_2:56313394-56313413 Msa0078650:CDS 30.0%
ATGGAAATGTTTATCGAAAC+TGG + chr1_2:56313517-56313536 None:intergenic 30.0%
ACTTATGAAAAAGCTAGATG+AGG + chr1_2:56313657-56313676 None:intergenic 30.0%
!! TTGAATTAGCTTTGAGCTTA+TGG + chr1_2:56313739-56313758 None:intergenic 30.0%
GCTCAAAGCTAATTCAAATT+TGG - chr1_2:56313742-56313761 Msa0078650:intron 30.0%
CAGAAGCAAATTGAAAAACA+TGG + chr1_2:56313839-56313858 None:intergenic 30.0%
!! CATGTTTTTCAATTTGCTTC+TGG - chr1_2:56313837-56313856 Msa0078650:intron 30.0%
ACTAGAAGAAGATGTTAAAG+AGG - chr1_2:56314464-56314483 Msa0078650:intron 30.0%
TGAAAATAGGATATGGTTAC+AGG + chr1_2:56314580-56314599 None:intergenic 30.0%
! TGTAACCATATCCTATTTTC+AGG - chr1_2:56314579-56314598 Msa0078650:intron 30.0%
GAAAGTAGTATCACTGTTAT+TGG + chr1_2:56314630-56314649 None:intergenic 30.0%
GTTAAATTCAAGGACAGAAA+AGG - chr1_2:56314753-56314772 Msa0078650:intron 30.0%
TAGAATTGATGAATGGAAGA+TGG - chr1_2:56314790-56314809 Msa0078650:CDS 30.0%
AAGAAGAAAACGGATAAACA+AGG + chr1_2:56314825-56314844 None:intergenic 30.0%
AGTCATTATTCAACCAGTTT+AGG - chr1_2:56314960-56314979 Msa0078650:CDS 30.0%
!! GAAACAATCATTTTTCCTTG+TGG - chr1_2:56315078-56315097 Msa0078650:intron 30.0%
TCGGGATATGTAAAAATGAA+AGG + chr1_2:56315221-56315240 None:intergenic 30.0%
! TCTGGTTTATTTATCAGGTT+TGG - chr1_2:56315266-56315285 Msa0078650:intron 30.0%
ATTTGGAAAATTGCGACATT+CGG - chr1_2:56315620-56315639 Msa0078650:CDS 30.0%
TATACTGTTGCATTAGATGA+TGG - chr1_2:56315755-56315774 Msa0078650:CDS 30.0%
! GTTTTCTTGGAGCAATTTCT+GGG + chr1_2:56309140-56309159 None:intergenic 35.0%
GATTTCAAATCACCTCATGA+CGG + chr1_2:56309690-56309709 None:intergenic 35.0%
AAAATTCTTACCACTGAGCT+AGG - chr1_2:56309731-56309750 Msa0078650:intron 35.0%
ATGTGGACGAGTTTGAAAAA+TGG - chr1_2:56309986-56310005 Msa0078650:intron 35.0%
CGAGTTTGAAAAATGGCAAA+AGG - chr1_2:56309993-56310012 Msa0078650:intron 35.0%
GTAAATTCTTCTTCACCATC+AGG + chr1_2:56310108-56310127 None:intergenic 35.0%
!! ATGATGATGGGACATATAAG+TGG - chr1_2:56310130-56310149 Msa0078650:intron 35.0%
!! TGATGATGGGACATATAAGT+GGG - chr1_2:56310131-56310150 Msa0078650:intron 35.0%
ATAAGTGGGATAAGAGTCTT+AGG - chr1_2:56310145-56310164 Msa0078650:CDS 35.0%
TAAGTGGGATAAGAGTCTTA+GGG - chr1_2:56310146-56310165 Msa0078650:CDS 35.0%
!! ATTTTGATGCCTAGGATTTG+GGG - chr1_2:56310294-56310313 Msa0078650:intron 35.0%
TATTATGCTCGAAGCTTATG+TGG - chr1_2:56310354-56310373 Msa0078650:intron 35.0%
! AGATTTTGCATAGGTCACAT+AGG - chr1_2:56310466-56310485 Msa0078650:CDS 35.0%
!!! GGAGGGAAATTTTTAGCAAT+AGG + chr1_2:56310571-56310590 None:intergenic 35.0%
!! ACTAGTTAGTTTGTTACGGA+GGG + chr1_2:56310592-56310611 None:intergenic 35.0%
!! TACTAGTTAGTTTGTTACGG+AGG + chr1_2:56310593-56310612 None:intergenic 35.0%
TGTTTGGCATCTTGTCAAAT+TGG - chr1_2:56310649-56310668 Msa0078650:intron 35.0%
TAAAGCACAGACAGTACATT+TGG - chr1_2:56310686-56310705 Msa0078650:intron 35.0%
! CCTTTATAGCAGTGTCTTTT+TGG + chr1_2:56310882-56310901 None:intergenic 35.0%
CCAAAAAGACACTGCTATAA+AGG - chr1_2:56310879-56310898 Msa0078650:CDS 35.0%
ATTCAGAGAATCAACAACCT+TGG + chr1_2:56311336-56311355 None:intergenic 35.0%
AATTGTTATGTGATAGGAGG+AGG - chr1_2:56311408-56311427 Msa0078650:intron 35.0%
!! GATGACCTTTTTGAAAGAAG+AGG - chr1_2:56311468-56311487 Msa0078650:intron 35.0%
GCATCAGAATCAGTTACTAT+CGG + chr1_2:56311502-56311521 None:intergenic 35.0%
! TGTTTCTGCAACTTCCATAA+AGG - chr1_2:56311555-56311574 Msa0078650:intron 35.0%
TGAAGCAAAAAATACCAGTG+TGG - chr1_2:56311588-56311607 Msa0078650:intron 35.0%
TCATCAATAGTAACATCCTC+AGG + chr1_2:56311871-56311890 None:intergenic 35.0%
ACTAACATGGGCAATATTGT+AGG - chr1_2:56311947-56311966 Msa0078650:CDS 35.0%
! GTGGAAACATTTTCCAAGTA+TGG - chr1_2:56311972-56311991 Msa0078650:CDS 35.0%
! AATCTTTGGCAAGACACTTT+TGG + chr1_2:56312403-56312422 None:intergenic 35.0%
GTGTCTTGCCAAAGATTAAA+AGG - chr1_2:56312406-56312425 Msa0078650:intron 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr1_2:56312509-56312528 None:intergenic 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - chr1_2:56312509-56312528 Msa0078650:intron 35.0%
AGCCTCTTGTGTAAAAAACA+GGG + chr1_2:56312514-56312533 None:intergenic 35.0%
!!! GAAAACATCAGACTAGCTTT+TGG - chr1_2:56312675-56312694 Msa0078650:intron 35.0%
CATGCAATTCATATGAAGCT+GGG + chr1_2:56312718-56312737 None:intergenic 35.0%
TCATGCAATTCATATGAAGC+TGG + chr1_2:56312719-56312738 None:intergenic 35.0%
! GAACTGATTCTGTTTGAAAC+AGG - chr1_2:56312741-56312760 Msa0078650:intron 35.0%
ATCAACATAGAGCTTAACAC+GGG + chr1_2:56312785-56312804 None:intergenic 35.0%
! CTCTATGTTGATAAAGAGAC+AGG - chr1_2:56312793-56312812 Msa0078650:intron 35.0%
AAGAAAAAAGGGAGATGCAT+TGG - chr1_2:56312816-56312835 Msa0078650:intron 35.0%
!! TGCATTGGTTACATATCTCA+AGG - chr1_2:56312831-56312850 Msa0078650:intron 35.0%
AATTCAAAGCTACGTATCAC+AGG + chr1_2:56312877-56312896 None:intergenic 35.0%
!! TACGTAGCTTTGAATTTGTC+AGG - chr1_2:56312881-56312900 Msa0078650:intron 35.0%
!! ACGTAGCTTTGAATTTGTCA+GGG - chr1_2:56312882-56312901 Msa0078650:intron 35.0%
GGAGCTTTCTTTAAATATGC+AGG - chr1_2:56313156-56313175 Msa0078650:intron 35.0%
AAGCTGACAAAGACAATAGA+CGG - chr1_2:56313199-56313218 Msa0078650:intron 35.0%
AAGTTGGAAGACAAAATGCT+TGG - chr1_2:56313237-56313256 Msa0078650:intron 35.0%
ATTGATCCATTTACACCATC+TGG + chr1_2:56313403-56313422 None:intergenic 35.0%
! TTTGGATGATTTGGAGTTTC+TGG - chr1_2:56313938-56313957 Msa0078650:intron 35.0%
! TGATTTTCATTGTATGGCAC+AGG - chr1_2:56314013-56314032 Msa0078650:intron 35.0%
CTCTCAGTATTGCAATTTGT+TGG - chr1_2:56314370-56314389 Msa0078650:intron 35.0%
ACTGTTATTGGTACAGGTAT+GGG + chr1_2:56314618-56314637 None:intergenic 35.0%
AGTATCACTGTTATTGGTAC+AGG + chr1_2:56314624-56314643 None:intergenic 35.0%
GTATGTGATAATCATCCTCA+GGG - chr1_2:56314720-56314739 Msa0078650:intron 35.0%
! GAAAGTGCAGAAGAAGAAAA+CGG + chr1_2:56314835-56314854 None:intergenic 35.0%
! GTTTTCTTCTTCTGCACTTT+CGG - chr1_2:56314834-56314853 Msa0078650:CDS 35.0%
ACTAAAACAAGATCTGGAGA+AGG + chr1_2:56314943-56314962 None:intergenic 35.0%
!!! AAAACCTTTGAGCTTTTTCG+AGG - chr1_2:56315021-56315040 Msa0078650:intron 35.0%
!!! AAACCTTTGAGCTTTTTCGA+GGG - chr1_2:56315022-56315041 Msa0078650:intron 35.0%
!! GTTTGGCATTGATATCAGTA+AGG - chr1_2:56315044-56315063 Msa0078650:intron 35.0%
TTTCCTTGTGGGTAAAGTAT+AGG - chr1_2:56315090-56315109 Msa0078650:intron 35.0%
TTCCTTGTGGGTAAAGTATA+GGG - chr1_2:56315091-56315110 Msa0078650:intron 35.0%
GGTTTATTTATCAGGTTTGG+TGG - chr1_2:56315269-56315288 Msa0078650:intron 35.0%
AATTAAACCATCGTCTTCAC+TGG + chr1_2:56315309-56315328 None:intergenic 35.0%
AACTTGAAGGTGAATGAGTT+AGG - chr1_2:56315390-56315409 Msa0078650:CDS 35.0%
CTTATTAGGAACTGTGAATC+TGG + chr1_2:56315430-56315449 None:intergenic 35.0%
AATGCTAATCTCACATCACA+GGG + chr1_2:56315877-56315896 None:intergenic 35.0%
! CGTTTTCTTGGAGCAATTTC+TGG + chr1_2:56309141-56309160 None:intergenic 40.0%
!! TTTAACTGAGCTTGTTACGC+AGG - chr1_2:56309266-56309285 Msa0078650:three_prime_UTR 40.0%
AAAATGTCGCAGATGTTGGA+TGG - chr1_2:56309291-56309310 Msa0078650:three_prime_UTR 40.0%
GGAGAGAATCAACAACAACT+TGG - chr1_2:56309323-56309342 Msa0078650:three_prime_UTR 40.0%
!! CATAAACACAGGGCTTTGTT+TGG + chr1_2:56309386-56309405 None:intergenic 40.0%
AAGACGAATTGGGTCTTTGA+GGG + chr1_2:56309560-56309579 None:intergenic 40.0%
GACGGTTGTAAAATGGTCAA+TGG + chr1_2:56309672-56309691 None:intergenic 40.0%
! ACCATTTTACAACCGTCATG+AGG - chr1_2:56309675-56309694 Msa0078650:intron 40.0%
ACCTCATGACGGTTGTAAAA+TGG + chr1_2:56309679-56309698 None:intergenic 40.0%
ATGGCAAAAGGAGATTAAGG+AGG - chr1_2:56310005-56310024 Msa0078650:intron 40.0%
AATTCTTCTTCACCATCAGG+CGG + chr1_2:56310105-56310124 None:intergenic 40.0%
AGAGTCTTAGGGCATATAAG+CGG - chr1_2:56310157-56310176 Msa0078650:CDS 40.0%
TAAACCTAACCCCAAATCCT+AGG + chr1_2:56310306-56310325 None:intergenic 40.0%
TCGAAGCTTATGTGGTTCAT+AGG - chr1_2:56310362-56310381 Msa0078650:intron 40.0%
CGAAGCTTATGTGGTTCATA+GGG - chr1_2:56310363-56310382 Msa0078650:intron 40.0%
! ACACTGAAGGTGTATTAAGG+TGG - chr1_2:56310524-56310543 Msa0078650:intron 40.0%
! TGAACCTTCTGTCTTGTTGA+TGG - chr1_2:56310729-56310748 Msa0078650:intron 40.0%
! GAACCTTCTGTCTTGTTGAT+GGG - chr1_2:56310730-56310749 Msa0078650:intron 40.0%
AATCCCATCAACAAGACAGA+AGG + chr1_2:56310736-56310755 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG - chr1_2:56310927-56310946 Msa0078650:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr1_2:56310928-56310947 Msa0078650:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr1_2:56310934-56310953 Msa0078650:intron 40.0%
GTGTTTGGATTGAGGGTTTA+GGG - chr1_2:56310935-56310954 Msa0078650:intron 40.0%
TGTTTGGATTGAGGGTTTAG+GGG - chr1_2:56310936-56310955 Msa0078650:intron 40.0%
! CATTTCCTTAAGGGTGTGTT+TGG + chr1_2:56311165-56311184 None:intergenic 40.0%
! ATAAGATGAACAGATAGCGG+CGG + chr1_2:56311665-56311684 None:intergenic 40.0%
TATTGACCTCATTCTGTTCC+AGG - chr1_2:56311777-56311796 Msa0078650:intron 40.0%
CTAATAAACCTCCTGACAGT+TGG - chr1_2:56311803-56311822 Msa0078650:intron 40.0%
AATTCAAACCAACTGTCAGG+AGG + chr1_2:56311814-56311833 None:intergenic 40.0%
ATGGGCAATATTGTAGGTTG+TGG - chr1_2:56311953-56311972 Msa0078650:CDS 40.0%
!! GCTAGTTCTAAAGAGTTGCT+TGG + chr1_2:56312375-56312394 None:intergenic 40.0%
! CAGGTTGCCCTTTTAATCTT+TGG + chr1_2:56312417-56312436 None:intergenic 40.0%
CAAAGATTAAAAGGGCAACC+TGG - chr1_2:56312415-56312434 Msa0078650:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG + chr1_2:56312515-56312534 None:intergenic 40.0%
!! TTACACAAGAGGCTGTTTTC+AGG - chr1_2:56312520-56312539 Msa0078650:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr1_2:56312560-56312579 None:intergenic 40.0%
TTACCCTTCTGTCTTGCAAA+AGG - chr1_2:56312599-56312618 Msa0078650:intron 40.0%
! CAACCTTTTGCAAGACAGAA+GGG + chr1_2:56312605-56312624 None:intergenic 40.0%
! ACAACCTTTTGCAAGACAGA+AGG + chr1_2:56312606-56312625 None:intergenic 40.0%
!!! AACATCAGACTAGCTTTTGG+AGG - chr1_2:56312678-56312697 Msa0078650:intron 40.0%
!!! AGACTAGCTTTTGGAGGTTT+TGG - chr1_2:56312684-56312703 Msa0078650:intron 40.0%
TCAACATAGAGCTTAACACG+GGG + chr1_2:56312784-56312803 None:intergenic 40.0%
TGTATATCAGGAACCATCAG+TGG - chr1_2:56312923-56312942 Msa0078650:intron 40.0%
! CTAGCAATCCAACTTTTGGA+TGG - chr1_2:56312948-56312967 Msa0078650:CDS 40.0%
TAGTTAACTATCACTCCTGC+TGG - chr1_2:56313125-56313144 Msa0078650:CDS 40.0%
! ATTGTCTTTGTCAGCTTGCT+TGG + chr1_2:56313196-56313215 None:intergenic 40.0%
TGGAAGACAAAATGCTTGGA+TGG - chr1_2:56313241-56313260 Msa0078650:intron 40.0%
GGAAGACAAAATGCTTGGAT+GGG - chr1_2:56313242-56313261 Msa0078650:intron 40.0%
GAAGACAAAATGCTTGGATG+GGG - chr1_2:56313243-56313262 Msa0078650:intron 40.0%
TCAGTGAACTCAAGGATCAA+CGG + chr1_2:56313440-56313459 None:intergenic 40.0%
AAATGCACTCAGTGAACTCA+AGG + chr1_2:56313448-56313467 None:intergenic 40.0%
! TGAGTTCACTGAGTGCATTT+TGG - chr1_2:56313448-56313467 Msa0078650:CDS 40.0%
! TTTTCATTGTATGGCACAGG+TGG - chr1_2:56314016-56314035 Msa0078650:intron 40.0%
ATATCAACCCTCATTTCAGC+AGG + chr1_2:56314100-56314119 None:intergenic 40.0%
! ACCATAGCTGTCCATCATTT+TGG - chr1_2:56314180-56314199 Msa0078650:intron 40.0%
!! TCCAAAATGATGGACAGCTA+TGG + chr1_2:56314184-56314203 None:intergenic 40.0%
! GCTGTCCATCATTTTGGATT+TGG - chr1_2:56314186-56314205 Msa0078650:intron 40.0%
ACTACCTTGACTGCATCTAT+AGG + chr1_2:56314507-56314526 None:intergenic 40.0%
CTGTTATTGGTACAGGTATG+GGG + chr1_2:56314617-56314636 None:intergenic 40.0%
CACTGTTATTGGTACAGGTA+TGG + chr1_2:56314619-56314638 None:intergenic 40.0%
GTCAAACACAACAGAAACAC+AGG + chr1_2:56314663-56314682 None:intergenic 40.0%
CAGCAAACATGGAAATACAG+AGG + chr1_2:56314697-56314716 None:intergenic 40.0%
! TGTATTTCCATGTTTGCTGC+AGG - chr1_2:56314698-56314717 Msa0078650:intron 40.0%
GGTATGTGATAATCATCCTC+AGG - chr1_2:56314719-56314738 Msa0078650:intron 40.0%
TTAACCAAAACAACACCCTG+AGG + chr1_2:56314738-56314757 None:intergenic 40.0%
GCGTGCATAGAATTGATGAA+TGG - chr1_2:56314783-56314802 Msa0078650:CDS 40.0%
! GCTATGCTGCTTATATGACA+AGG + chr1_2:56314890-56314909 None:intergenic 40.0%
TATAAGCAGCATAGCCTACT+TGG - chr1_2:56314895-56314914 Msa0078650:CDS 40.0%
!!! GCATGCTGACTTTCTTTTGT+TGG - chr1_2:56314917-56314936 Msa0078650:CDS 40.0%
AAACCCTCGAAAAAGCTCAA+AGG + chr1_2:56315028-56315047 None:intergenic 40.0%
!!! TTTGAGCTTTTTCGAGGGTT+TGG - chr1_2:56315027-56315046 Msa0078650:intron 40.0%
ATCCCTATACTTTACCCACA+AGG + chr1_2:56315096-56315115 None:intergenic 40.0%
TAATTAACCATGCCACAGTC+CGG - chr1_2:56315324-56315343 Msa0078650:intron 40.0%
TCACAGTTCCTAATAAGTCC+AGG - chr1_2:56315433-56315452 Msa0078650:CDS 40.0%
TTTCAAGGCCTGGACTTATT+AGG + chr1_2:56315444-56315463 None:intergenic 40.0%
TCTTGCAATATTTCAAGGCC+TGG + chr1_2:56315454-56315473 None:intergenic 40.0%
GGGGTTCTTGCAATATTTCA+AGG + chr1_2:56315459-56315478 None:intergenic 40.0%
ACGTAGTAATCCATGAGCTT+CGG + chr1_2:56315480-56315499 None:intergenic 40.0%
CTGCAAAACTGCAAAAAGCA+AGG + chr1_2:56315509-56315528 None:intergenic 40.0%
AAAAAAGCTGCAACTTGCCA+TGG - chr1_2:56315824-56315843 Msa0078650:five_prime_UTR 40.0%
GAATGCTAATCTCACATCAC+AGG + chr1_2:56315878-56315897 None:intergenic 40.0%
TGGGTTTCTATTCGCTACAG+TGG + chr1_2:56309121-56309140 None:intergenic 45.0%
AGAAGTTAGCGTGTACCAGT+AGG + chr1_2:56309206-56309225 None:intergenic 45.0%
! GCTGCGGATTTGAGATGAAA+AGG + chr1_2:56309237-56309256 None:intergenic 45.0%
GGTGAAAATGTCGCAGATGT+TGG - chr1_2:56309287-56309306 Msa0078650:three_prime_UTR 45.0%
GATGTTGGATGGTACGTTCT+TGG - chr1_2:56309302-56309321 Msa0078650:three_prime_UTR 45.0%
TGGTCCTTATGTCTTCTCTG+AGG - chr1_2:56309343-56309362 Msa0078650:three_prime_UTR 45.0%
TGCACCTCAGAGAAGACATA+AGG + chr1_2:56309350-56309369 None:intergenic 45.0%
!! TATGTCTTCTCTGAGGTGCA+AGG - chr1_2:56309350-56309369 Msa0078650:three_prime_UTR 45.0%
GGTCTGAAGGAAGAACTGAA+TGG - chr1_2:56309493-56309512 Msa0078650:three_prime_UTR 45.0%
GAAGACGAATTGGGTCTTTG+AGG + chr1_2:56309561-56309580 None:intergenic 45.0%
CCTGCAGTTGAAGACGAATT+GGG + chr1_2:56309570-56309589 None:intergenic 45.0%
TTATGCTGAGGCTGAAGATG+TGG - chr1_2:56309969-56309988 Msa0078650:intron 45.0%
AAAGGAGATTAAGGAGGCTG+AGG - chr1_2:56310011-56310030 Msa0078650:intron 45.0%
CAAGTGGAAGCTTCGGAATT+CGG - chr1_2:56310036-56310055 Msa0078650:intron 45.0%
GAGTCTTAGGGCATATAAGC+GGG - chr1_2:56310158-56310177 Msa0078650:CDS 45.0%
! GGGACACTGAAGGTGTATTA+AGG - chr1_2:56310521-56310540 Msa0078650:intron 45.0%
!! GTTAGTTTGTTACGGAGGGA+GGG + chr1_2:56310588-56310607 None:intergenic 45.0%
!! AGTTAGTTTGTTACGGAGGG+AGG + chr1_2:56310589-56310608 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+GGG - chr1_2:56310937-56310956 Msa0078650:intron 45.0%
TTTGGATTGAGGGTTTAGGG+GGG - chr1_2:56310938-56310957 Msa0078650:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG + chr1_2:56311147-56311166 None:intergenic 45.0%
TGTGTTTGGATGGAGGGTTT+AGG + chr1_2:56311151-56311170 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATGGA+GGG + chr1_2:56311157-56311176 None:intergenic 45.0%
! TTAAGGGTGTGTTTGGATGG+AGG + chr1_2:56311158-56311177 None:intergenic 45.0%
TCCATCCAAACACACCCTTA+AGG - chr1_2:56311157-56311176 Msa0078650:intron 45.0%
! TCCTTAAGGGTGTGTTTGGA+TGG + chr1_2:56311161-56311180 None:intergenic 45.0%
GTCATCTCTTCAACCCCATA+AGG + chr1_2:56311454-56311473 None:intergenic 45.0%
AATACCAGTGTGGTAGCTGT+TGG - chr1_2:56311598-56311617 Msa0078650:intron 45.0%
ATACCAGTGTGGTAGCTGTT+GGG - chr1_2:56311599-56311618 Msa0078650:intron 45.0%
TAGCTTCCTGGAACAGAATG+AGG + chr1_2:56311786-56311805 None:intergenic 45.0%
! CAGGAGGTTTATTAGCTTCC+TGG + chr1_2:56311798-56311817 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr1_2:56312553-56312572 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr1_2:56312554-56312573 None:intergenic 45.0%
!! GGCTCTAGCAATCCAACTTT+TGG - chr1_2:56312944-56312963 Msa0078650:CDS 45.0%
! TTTTGGATGGTGCGCCTTTT+CGG - chr1_2:56312961-56312980 Msa0078650:CDS 45.0%
ATCTTATCACCAGGCCGAAA+AGG + chr1_2:56312978-56312997 None:intergenic 45.0%
GACATCGGAATCTTATCACC+AGG + chr1_2:56312987-56313006 None:intergenic 45.0%
ACTCAAGGATCAACGGACAT+GGG + chr1_2:56313433-56313452 None:intergenic 45.0%
AACTCAAGGATCAACGGACA+TGG + chr1_2:56313434-56313453 None:intergenic 45.0%
! TGAAGCAAGAAAGCATGCTG+TGG - chr1_2:56313866-56313885 Msa0078650:intron 45.0%
TAGCGAAGGACAACAGTTGT+TGG + chr1_2:56314067-56314086 None:intergenic 45.0%
CAGGACTGAACATATAGCGA+AGG + chr1_2:56314081-56314100 None:intergenic 45.0%
TGTTCAGTCCTGCTGAAATG+AGG - chr1_2:56314089-56314108 Msa0078650:intron 45.0%
GTTCAGTCCTGCTGAAATGA+GGG - chr1_2:56314090-56314109 Msa0078650:intron 45.0%
AAAGAGGAATGCACGAAGCT+TGG - chr1_2:56314480-56314499 Msa0078650:intron 45.0%
TGGACCTATAGATGCAGTCA+AGG - chr1_2:56314500-56314519 Msa0078650:intron 45.0%
TCACATACCTGCAGCAAACA+TGG + chr1_2:56314708-56314727 None:intergenic 45.0%
!!! TCATCCTCAGGGTGTTGTTT+TGG - chr1_2:56314731-56314750 Msa0078650:intron 45.0%
AGAAAGTCAGCATGCCAAGT+AGG + chr1_2:56314912-56314931 None:intergenic 45.0%
ATACATGCCAGTGAAGACGA+TGG - chr1_2:56315299-56315318 Msa0078650:intron 45.0%
AATTAACCATGCCACAGTCC+GGG - chr1_2:56315325-56315344 Msa0078650:intron 45.0%
TAGCATCTTCCTCTAGATCC+CGG + chr1_2:56315346-56315365 None:intergenic 45.0%
AGAGGAAGATGCTAAGCGAT+TGG - chr1_2:56315352-56315371 Msa0078650:intron 45.0%
! CAGTTTGGTGAGGAACTTGA+AGG - chr1_2:56315377-56315396 Msa0078650:CDS 45.0%
GTAGTAATCCATGAGCTTCG+GGG + chr1_2:56315478-56315497 None:intergenic 45.0%
CGTAGTAATCCATGAGCTTC+GGG + chr1_2:56315479-56315498 None:intergenic 45.0%
CCAATGGCGTTAATGTTCCA+TGG + chr1_2:56315844-56315863 None:intergenic 45.0%
CCATGGAACATTAACGCCAT+TGG - chr1_2:56315841-56315860 Msa0078650:five_prime_UTR 45.0%
ACAGGGTCAATCAACACCAA+TGG + chr1_2:56315860-56315879 None:intergenic 45.0%
!!! TTTTTTTAATTTTTTATGAA+TGG - chr1_2:56312257-56312276 Msa0078650:intron 5.0%
! GTCGTCGTCTCTAGAAACCA+CGG - chr1_2:56309061-56309080 Msa0078650:three_prime_UTR 50.0%
! TCGTCGTCTCTAGAAACCAC+GGG - chr1_2:56309062-56309081 Msa0078650:three_prime_UTR 50.0%
!! AAGCAATGAAAGAGTGCCCG+TGG + chr1_2:56309081-56309100 None:intergenic 50.0%
TATTCGCTACAGTGGCAGCA+AGG + chr1_2:56309113-56309132 None:intergenic 50.0%
CAGTAGGTTGCGGTTGATTG+TGG + chr1_2:56309190-56309209 None:intergenic 50.0%
CACAATCAACCGCAACCTAC+TGG - chr1_2:56309188-56309207 Msa0078650:three_prime_UTR 50.0%
TAGCGTGTACCAGTAGGTTG+CGG + chr1_2:56309200-56309219 None:intergenic 50.0%
CCCAATTCGTCTTCAACTGC+AGG - chr1_2:56309567-56309586 Msa0078650:CDS 50.0%
GCCTGCAGTTGAAGACGAAT+TGG + chr1_2:56309571-56309590 None:intergenic 50.0%
! TATAAGCGGGTTCCTCAGGT+TGG - chr1_2:56310171-56310190 Msa0078650:CDS 50.0%
AAAGCTCGTGTACCAACCTG+AGG + chr1_2:56310186-56310205 None:intergenic 50.0%
! GATGCCTAGGATTTGGGGTT+AGG - chr1_2:56310299-56310318 Msa0078650:intron 50.0%
GCTTATGTGGTTCATAGGGC+TGG - chr1_2:56310367-56310386 Msa0078650:intron 50.0%
AGGTCACATAGGATCCCTGA+AGG - chr1_2:56310477-56310496 Msa0078650:CDS 50.0%
AAGGTGTAGCCCAGTGGTAT+GGG - chr1_2:56310496-56310515 Msa0078650:intron 50.0%
TAGGGGTCGAACACTAGAGT+CGG + chr1_2:56310552-56310571 None:intergenic 50.0%
TTGGATTGAGGGTTTAGGGG+GGG - chr1_2:56310939-56310958 Msa0078650:intron 50.0%
TTGGATGGAGGGTTTAGGAG+GGG + chr1_2:56311146-56311165 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG + chr1_2:56311148-56311167 None:intergenic 50.0%
! TCTGGTAGCGCTTTGCCTTA+TGG - chr1_2:56311436-56311455 Msa0078650:intron 50.0%
! CTGGTAGCGCTTTGCCTTAT+GGG - chr1_2:56311437-56311456 Msa0078650:intron 50.0%
! TGGTAGCGCTTTGCCTTATG+GGG - chr1_2:56311438-56311457 Msa0078650:intron 50.0%
! GCGGACACCTTCTTTTCTTC+AGG + chr1_2:56311646-56311665 None:intergenic 50.0%
TTATGTCACTGGGTTGCCTG+AGG - chr1_2:56311852-56311871 Msa0078650:intron 50.0%
ATGTGCCCAGAAAAGGGAAG+GGG + chr1_2:56312312-56312331 None:intergenic 50.0%
CATGTGCCCAGAAAAGGGAA+GGG + chr1_2:56312313-56312332 None:intergenic 50.0%
ACATGTGCCCAGAAAAGGGA+AGG + chr1_2:56312314-56312333 None:intergenic 50.0%
GAGCACATGTGCCCAGAAAA+GGG + chr1_2:56312318-56312337 None:intergenic 50.0%
TGAGCACATGTGCCCAGAAA+AGG + chr1_2:56312319-56312338 None:intergenic 50.0%
! AAAATGGTGGGACCCCTTAC+CGG + chr1_2:56312469-56312488 None:intergenic 50.0%
! GTAAGGGGTCCCACCATTTT+TGG - chr1_2:56312469-56312488 Msa0078650:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1_2:56312576-56312595 Msa0078650:intron 50.0%
GCAAGACAGAAGGGTAACCT+TGG + chr1_2:56312596-56312615 None:intergenic 50.0%
!!! ACACGGGGCTTTTTGGTTTC+TGG + chr1_2:56312769-56312788 None:intergenic 50.0%
! GAGCTTAACACGGGGCTTTT+TGG + chr1_2:56312776-56312795 None:intergenic 50.0%
TGGATTGCTAGAGCCACTGA+TGG + chr1_2:56312939-56312958 None:intergenic 50.0%
AAGGCGCACCATCCAAAAGT+TGG + chr1_2:56312959-56312978 None:intergenic 50.0%
TTAGCCAGGGAGACAGACAT+CGG + chr1_2:56313002-56313021 None:intergenic 50.0%
ATGCTTGGATGGGGTATGCT+TGG - chr1_2:56313252-56313271 Msa0078650:intron 50.0%
TCACATGTGTAGCGATGCAC+TGG + chr1_2:56314161-56314180 None:intergenic 50.0%
!! CAAGGACAGAAAAGGTGCTC+AGG - chr1_2:56314761-56314780 Msa0078650:intron 50.0%
GCTAAGCGATTGGAGCAGTT+TGG - chr1_2:56315362-56315381 Msa0078650:intron 50.0%
CACTGTCAGCATATCGCACG+AGG - chr1_2:56309640-56309659 Msa0078650:CDS 55.0%
!! CACTTGCTGTCCTAGCTCAG+TGG + chr1_2:56309744-56309763 None:intergenic 55.0%
TGAGGCGCAAGTGGAAGCTT+CGG - chr1_2:56310029-56310048 Msa0078650:intron 55.0%
GTGGAAGCTTCGGAATTCGG+TGG - chr1_2:56310039-56310058 Msa0078650:intron 55.0%
! GAAGCTTCGGAATTCGGTGG+TGG - chr1_2:56310042-56310061 Msa0078650:intron 55.0%
!! TTCGGTGGTGGTGGTGTAGT+AGG - chr1_2:56310054-56310073 Msa0078650:intron 55.0%
AGACCTTCAACACCGCCTGA+TGG - chr1_2:56310090-56310109 Msa0078650:intron 55.0%
! TCACCATCAGGCGGTGTTGA+AGG + chr1_2:56310096-56310115 None:intergenic 55.0%
! GGCATATAAGCGGGTTCCTC+AGG - chr1_2:56310167-56310186 Msa0078650:CDS 55.0%
ACCACTGGGCTACACCTTCA+GGG + chr1_2:56310494-56310513 None:intergenic 55.0%
TACCACTGGGCTACACCTTC+AGG + chr1_2:56310495-56310514 None:intergenic 55.0%
! GAAGGTGTAGCCCAGTGGTA+TGG - chr1_2:56310495-56310514 Msa0078650:intron 55.0%
TGTAGCCCAGTGGTATGGGT+TGG - chr1_2:56310500-56310519 Msa0078650:intron 55.0%
GTAGCCCAGTGGTATGGGTT+GGG - chr1_2:56310501-56310520 Msa0078650:intron 55.0%
GTGTCCCAACCCATACCACT+GGG + chr1_2:56310508-56310527 None:intergenic 55.0%
AGTGTCCCAACCCATACCAC+TGG + chr1_2:56310509-56310528 None:intergenic 55.0%
!! GGTATGGGTTGGGACACTGA+AGG - chr1_2:56310511-56310530 Msa0078650:intron 55.0%
AGGGGTCGAACACTAGAGTC+GGG + chr1_2:56310551-56310570 None:intergenic 55.0%
ATTGAGGGTTTAGGGGGGGA+AGG - chr1_2:56310943-56310962 Msa0078650:intron 55.0%
TTGAGGGTTTAGGGGGGGAA+GGG - chr1_2:56310944-56310963 Msa0078650:intron 55.0%
TGGAGGGTTTAGGAGGGGAA+GGG + chr1_2:56311141-56311160 None:intergenic 55.0%
ATGGAGGGTTTAGGAGGGGA+AGG + chr1_2:56311142-56311161 None:intergenic 55.0%
CTTCCCAACAGCTACCACAC+TGG + chr1_2:56311605-56311624 None:intergenic 55.0%
GTGTGGTAGCTGTTGGGAAG+AGG - chr1_2:56311605-56311624 Msa0078650:intron 55.0%
! GAGAGCCCCTTCCCTTTTCT+GGG - chr1_2:56312304-56312323 Msa0078650:intron 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr1_2:56312441-56312460 Msa0078650:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr1_2:56312442-56312461 Msa0078650:intron 55.0%
AAGGGTAACCTTGGCGCAAC+TGG + chr1_2:56312587-56312606 None:intergenic 55.0%
GATTCCGATGTCTGTCTCCC+TGG - chr1_2:56312995-56313014 Msa0078650:intron 55.0%
TTCCTCTAGATCCCGGACTG+TGG + chr1_2:56315339-56315358 None:intergenic 55.0%
! GCGATTGGAGCAGTTTGGTG+AGG - chr1_2:56315367-56315386 Msa0078650:CDS 55.0%
TGCAAGAACCCCGAAGCTCA+TGG - chr1_2:56315467-56315486 Msa0078650:CDS 55.0%
TAAGGAGGCTGAGGCGCAAG+TGG - chr1_2:56310020-56310039 Msa0078650:intron 60.0%
! GCTTCGGAATTCGGTGGTGG+TGG - chr1_2:56310045-56310064 Msa0078650:intron 60.0%
! TCCCTGAAGGTGTAGCCCAG+TGG - chr1_2:56310490-56310509 Msa0078650:CDS 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr1_2:56311136-56311155 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr1_2:56311137-56311156 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr1_2:56311138-56311157 None:intergenic 60.0%
TGATAGGAGGAGGCCACGTC+TGG - chr1_2:56311418-56311437 Msa0078650:intron 60.0%
! AGGCAAAGCGCTACCAGACG+TGG + chr1_2:56311434-56311453 None:intergenic 60.0%
! GGAGAGCCCCTTCCCTTTTC+TGG - chr1_2:56312303-56312322 Msa0078650:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+AGG + chr1_2:56312436-56312455 None:intergenic 60.0%
TTACCGGACCCTGCGTATGC+GGG + chr1_2:56312453-56312472 None:intergenic 60.0%
CTTACCGGACCCTGCGTATG+CGG + chr1_2:56312454-56312473 None:intergenic 60.0%
GCATACGCAGGGTCCGGTAA+GGG - chr1_2:56312453-56312472 Msa0078650:intron 60.0%
CATACGCAGGGTCCGGTAAG+GGG - chr1_2:56312454-56312473 Msa0078650:intron 60.0%
TCACTCCTGCTGGTGCCTGA+TGG - chr1_2:56313135-56313154 Msa0078650:intron 60.0%
AAGCTCCATCAGGCACCAGC+AGG + chr1_2:56313143-56313162 None:intergenic 60.0%
CTAGATCCCGGACTGTGGCA+TGG + chr1_2:56315334-56315353 None:intergenic 60.0%
TGCCACAGTCCGGGATCTAG+AGG - chr1_2:56315334-56315353 Msa0078650:intron 60.0%
AGGGTTTAGGGGGGGAAGGG+AGG - chr1_2:56310947-56310966 Msa0078650:intron 65.0%
GGGTTTAGGGGGGGAAGGGA+GGG - chr1_2:56310948-56310967 Msa0078650:intron 65.0%
GGTTTAGGGGGGGAAGGGAG+GGG - chr1_2:56310949-56310968 Msa0078650:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr1_2:56311132-56311151 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr1_2:56311133-56311152 None:intergenic 65.0%
CGCATACGCAGGGTCCGGTA+AGG - chr1_2:56312452-56312471 Msa0078650:intron 65.0%
! GATGGTGCGCCTTTTCGGCC+TGG - chr1_2:56312966-56312985 Msa0078650:intron 65.0%
CCTCTCGCCCGTGCGTGGAT+CGG + chr1_2:56309038-56309057 None:intergenic 70.0%
ACGTTCCTCTCGCCCGTGCG+TGG + chr1_2:56309043-56309062 None:intergenic 70.0%
TAGGGGGGGAAGGGAGGGGA+TGG - chr1_2:56310953-56310972 Msa0078650:intron 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr1_2:56312447-56312466 Msa0078650:intron 70.0%
CCGATCCACGCACGGGCGAG+AGG - chr1_2:56309035-56309054 Msa0078650:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56309034 56315917 56309034 ID=Msa0078650;Name=Msa0078650
chr1_2 mRNA 56309034 56315917 56309034 ID=Msa0078650-mRNA-1;Parent=Msa0078650;Name=Msa0078650-mRNA-1;_AED=0.13;_eAED=0.13;_QI=127|1|1|1|1|1|14|511|503
chr1_2 exon 56309034 56309668 56309034 ID=Msa0078650-mRNA-1:exon:17665;Parent=Msa0078650-mRNA-1
chr1_2 exon 56310140 56310231 56310140 ID=Msa0078650-mRNA-1:exon:17664;Parent=Msa0078650-mRNA-1
chr1_2 exon 56310430 56310510 56310430 ID=Msa0078650-mRNA-1:exon:17663;Parent=Msa0078650-mRNA-1
chr1_2 exon 56310840 56310916 56310840 ID=Msa0078650-mRNA-1:exon:17662;Parent=Msa0078650-mRNA-1
chr1_2 exon 56311687 56311773 56311687 ID=Msa0078650-mRNA-1:exon:17661;Parent=Msa0078650-mRNA-1
chr1_2 exon 56311916 56312018 56311916 ID=Msa0078650-mRNA-1:exon:17660;Parent=Msa0078650-mRNA-1
chr1_2 exon 56312099 56312188 56312099 ID=Msa0078650-mRNA-1:exon:17659;Parent=Msa0078650-mRNA-1
chr1_2 exon 56312944 56312982 56312944 ID=Msa0078650-mRNA-1:exon:17658;Parent=Msa0078650-mRNA-1
chr1_2 exon 56313060 56313152 56313060 ID=Msa0078650-mRNA-1:exon:17657;Parent=Msa0078650-mRNA-1
chr1_2 exon 56313294 56313527 56313294 ID=Msa0078650-mRNA-1:exon:17656;Parent=Msa0078650-mRNA-1
chr1_2 exon 56314763 56314983 56314763 ID=Msa0078650-mRNA-1:exon:17655;Parent=Msa0078650-mRNA-1
chr1_2 exon 56315363 56315500 56315363 ID=Msa0078650-mRNA-1:exon:17654;Parent=Msa0078650-mRNA-1
chr1_2 exon 56315580 56315663 56315580 ID=Msa0078650-mRNA-1:exon:17653;Parent=Msa0078650-mRNA-1
chr1_2 exon 56315742 56315917 56315742 ID=Msa0078650-mRNA-1:exon:17652;Parent=Msa0078650-mRNA-1
chr1_2 five_prime_UTR 56315791 56315917 56315791 ID=Msa0078650-mRNA-1:five_prime_utr;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56315742 56315790 56315742 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56315580 56315663 56315580 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56315363 56315500 56315363 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56314763 56314983 56314763 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56313294 56313527 56313294 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56313060 56313152 56313060 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56312944 56312982 56312944 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56312099 56312188 56312099 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56311916 56312018 56311916 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56311687 56311773 56311687 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56310840 56310916 56310840 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56310430 56310510 56310430 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56310140 56310231 56310140 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 CDS 56309545 56309668 56309545 ID=Msa0078650-mRNA-1:cds;Parent=Msa0078650-mRNA-1
chr1_2 three_prime_UTR 56309034 56309544 56309034 ID=Msa0078650-mRNA-1:three_prime_utr;Parent=Msa0078650-mRNA-1
Gene Sequence

>Msa0078650

ATGAATTCTGAAAATGGCTACGAAAGCCACAATCAACCGCAACCTACTGGTGAAAATGTCGCAGATGTTGGATGGTACGTTCTTGGAGAGAATCAACAACAACTTGGTCCTTATGTCTTCTCTGAGGTGCAAGAGCATTTCTTAAATGGATACCTATCAGAAAATACACTTTTATGGTCTGAAGGAAGAACTGAATGGCAGCCTTTGTCTTCAATTTCTGAATTATGGGATCAAATTAACCCTCAAAGACCCAATTCGTCTTCAACTGCAGTTTATGCTGAGGCTGAAGATGTGGACGAGTTTGAAAAATGGCAAAAGGAGATTAAGGAGGCTGAGGCGCAAGTGGAAGCTTCGGAATTCGGTGGTGGTGGTGTAGTAGGAGAAGACGTTGAGAGACCTTCAACACCGCCTGATGGTGAAGAAGAATTTACTGATGATGATGGGACATATAAGTGGGATAAGAGTCTTAGGGCATATAAGCGGGTTCCTCAGGAGGAGGCCACGTCTGGTAGCGCTTTGCCTTATGGGGTTGAAGAGATGACCTTTTTGAAAGAAGAGGAAGTTTTTCCGATAGTAACTGATTCTGATGCCTCAAAAATTGTTGAAGATAGTTCAAAATCGAGTGTTTCTGCAACTTCCATAAAGGAAGAAACAACTGAAGCAAAAAATACCAGTGTGGTAGCTGTTGGGAAGAGGAAGCATTCAGATAAACCTGAAGAAAAGAAGGAAGCTAATAAACCTCCTGACAGTTGGTTTGAATTAAAGGTCAATACACATGTTTATGTCACTGGGTTGCCTGAGGATGTTACTATTGATGAAGTTGTGGAAACATTTTCCAAGTATGGAATTATAAAAGAGGATCCAGAAACCAAAAAGCCCCGTGTTAAGCTCTATGTTGATAAAGAGACAGGAAGAAAAAAGGGAGATGCATTGGTTACATATCTCAAGGAACCATCAGTGGCTCTAGCAATCCAACTTTTGGATGGTGCGCCTTTTCGGCCTGGTGATAAGATTCCGATGTCTGTCTCCCTGGCTAAATTTCAGCAGAAAGGAGAGAAGTTTGTATCCAAGCAAGCTGACAAAGACAATAGACGGAAAAAGAAAACGAAAAAGTTGGAAGACAAAATGCTTGGATGGGGTGGTCGTGATGATTCAAAAGTTTTAATTCCAACAACTGTTGTCCTTCGCTATATGTTCAGTCCTGCTGAAATGAGGGCTGATGAAAATTTGCACTCAGAACTAGAAGAAGATGTTAAAGAGGAATGCACGAAGCTTGGACCTATAGATGCAGTCAAGGTATGTGATAATCATCCTCAGGGTGTTGTTTTGGTTAAATTCAAGGACAGAAAAGGTGCTCAGGCGTGCATAGAATTGATGAATGGAAGATGGTTTGGTGGTAGACAGATACATGCCAGTGAAGACGATGGTTTAATTAACCATGCCACAGTCCGGGATCTAGAGGAAGATGCTAAGCGATTGGAGCAGTTTGGTGAGGAACTTGAAGGTGAATGA

Protein sequence

>Msa0078650

MNSENGYESHNQPQPTGENVADVGWYVLGENQQQLGPYVFSEVQEHFLNGYLSENTLLWSEGRTEWQPLSSISELWDQINPQRPNSSSTAVYAEAEDVDEFEKWQKEIKEAEAQVEASEFGGGGVVGEDVERPSTPPDGEEEFTDDDGTYKWDKSLRAYKRVPQEEATSGSALPYGVEEMTFLKEEEVFPIVTDSDASKIVEDSSKSSVSATSIKEETTEAKNTSVVAVGKRKHSDKPEEKKEANKPPDSWFELKVNTHVYVTGLPEDVTIDEVVETFSKYGIIKEDPETKKPRVKLYVDKETGRKKGDALVTYLKEPSVALAIQLLDGAPFRPGDKIPMSVSLAKFQQKGEKFVSKQADKDNRRKKKTKKLEDKMLGWGGRDDSKVLIPTTVVLRYMFSPAEMRADENLHSELEEDVKEECTKLGPIDAVKVCDNHPQGVVLVKFKDRKGAQACIELMNGRWFGGRQIHASEDDGLINHATVRDLEEDAKRLEQFGEELEGE*