AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126370 MtrunA17_Chr1g0189371 96.450 507 13 2 1 503 1 506 0.0 992
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126370 AT5G16260.1 59.339 514 178 9 13 502 11 517 0.0 563

Find 155 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTTCAATTTCTGAATTA+TGG 0.084752 1_3:-55455961 Msa0126370:CDS
TTCAGTTGTTTCTTCCTTTA+TGG 0.114821 1_3:+55453915 None:intergenic
TTTGACTACCATATCTTATT+TGG 0.126095 1_3:-55449881 Msa0126370:three_prime_UTR
TGACAGTTGGTTTGAATTAA+AGG 0.162229 1_3:-55453668 Msa0126370:CDS
CTGGTAGCGCTTTGCCTTAT+GGG 0.205690 1_3:-55454047 Msa0126370:CDS
ATTTCAGAGCATTTCTTAAA+TGG 0.211617 1_3:-55456040 Msa0126370:intron
TCTGGTAGCGCTTTGCCTTA+TGG 0.229159 1_3:-55454048 Msa0126370:CDS
GTCTTCAATTTCTGAATTAT+GGG 0.244458 1_3:-55455960 Msa0126370:CDS
TTTCAAGGCCTGGACTTATT+AGG 0.251138 1_3:+55450043 None:intergenic
ATAAGTGGGATAAGAGTCTT+AGG 0.253904 1_3:-55455339 Msa0126370:CDS
GGCTCTAGCAATCCAACTTT+TGG 0.263833 1_3:-55452540 Msa0126370:CDS
AACTTCCTCTTCTTTCAAAA+AGG 0.285902 1_3:+55454011 None:intergenic
TGTATCATTGGAAAAGAAAA+AGG 0.296817 1_3:-55449931 Msa0126370:three_prime_UTR
AAAACGATGAATTCTGAAAA+TGG 0.309280 1_3:-55456329 Msa0126370:exon
CGTAGTAATCCATGAGCTTC+GGG 0.311556 1_3:+55450008 None:intergenic
TATTAGTTCTCTTGTATCAT+TGG 0.313605 1_3:-55449943 Msa0126370:three_prime_UTR
TCATCCTCAGGGTGTTGTTT+TGG 0.326001 1_3:-55450753 Msa0126370:CDS
AAAATGGCAAAAGGAGATTA+AGG 0.329467 1_3:-55455482 Msa0126370:CDS
CTTATTAGGAACTGTGAATC+TGG 0.330266 1_3:+55450057 None:intergenic
ACCTGCAGTTGAAGACGAAT+TGG 0.334870 1_3:+55455916 None:intergenic
GATGTTGGATGGTACGTTCT+TGG 0.346116 1_3:-55456182 Msa0126370:CDS
ATTGTCTTTGTCAGCTTGCT+TGG 0.355106 1_3:+55452291 None:intergenic
TTCGGTGGTGGTGGTGTAGT+AGG 0.376500 1_3:-55455430 Msa0126370:CDS
GTGTTATAATACTCATGATT+TGG 0.385876 1_3:+55449829 None:intergenic
AATACACATGTTTATGTCAC+TGG 0.389054 1_3:-55453643 Msa0126370:CDS
GGGGTTCTTGCAATATTTCA+AGG 0.390159 1_3:+55450028 None:intergenic
CAAGTGGAAGCTTCGGAATT+CGG 0.395495 1_3:-55455448 Msa0126370:CDS
CTTTCTGCTGAAATTTAGCC+AGG 0.400350 1_3:+55452471 None:intergenic
GGCATATAAGCGGGTTCCTC+AGG 0.404098 1_3:-55455317 Msa0126370:intron
TGTTTCTGCAACTTCCATAA+AGG 0.417508 1_3:-55453929 Msa0126370:CDS
AACTTGAAGGTGAATGAGTT+AGG 0.421155 1_3:-55450094 Msa0126370:exon
TCACCATCAGGCGGTGTTGA+AGG 0.424907 1_3:+55455391 None:intergenic
GCTAAGCGATTGGAGCAGTT+TGG 0.425973 1_3:-55450122 Msa0126370:CDS
ACGTAGTAATCCATGAGCTT+CGG 0.430518 1_3:+55450007 None:intergenic
ACTAGAAGAAGATGTTAAAG+AGG 0.441572 1_3:-55451020 Msa0126370:CDS
GTAAATTCTTCTTCACCATC+AGG 0.442135 1_3:+55455379 None:intergenic
GTTAAATTCAAGGACAGAAA+AGG 0.445666 1_3:-55450731 Msa0126370:CDS
TAATTAACCATGCCACAGTC+CGG 0.453104 1_3:-55450160 Msa0126370:CDS
ATTTGGAAAATTGCGACATT+CGG 0.457076 1_3:-55449864 Msa0126370:three_prime_UTR
ATCTTATCACCAGGCCGAAA+AGG 0.458485 1_3:+55452509 None:intergenic
GAAGACGAATTGGGTCTTTG+AGG 0.461752 1_3:+55455926 None:intergenic
AAGACGAATTGGGTCTTTGA+GGG 0.462016 1_3:+55455927 None:intergenic
AATTAAACCATCGTCTTCAC+TGG 0.462591 1_3:+55450178 None:intergenic
TGATAGGAGGAGGCCACGTC+TGG 0.466721 1_3:-55454066 Msa0126370:intron
ACTACCTTGACTGCATCTAT+AGG 0.470187 1_3:+55450980 None:intergenic
TAGCGAAGGACAACAGTTGT+TGG 0.472530 1_3:+55451420 None:intergenic
TGAGGCGCAAGTGGAAGCTT+CGG 0.475916 1_3:-55455455 Msa0126370:CDS
GTCATCTCTTCAACCCCATA+AGG 0.479721 1_3:+55454033 None:intergenic
CACAATCAACCGCAACCTAC+TGG 0.481272 1_3:-55456296 Msa0126370:intron
AAAGAGGAATGCACGAAGCT+TGG 0.484045 1_3:-55451004 Msa0126370:CDS
CAGTAGGTTGCGGTTGATTG+TGG 0.484700 1_3:+55456297 None:intergenic
CCCAATTCGTCTTCAACTGC+AGG 0.485119 1_3:-55455917 Msa0126370:intron
TTTAATTCAAACCAACTGTC+AGG 0.485198 1_3:+55453670 None:intergenic
GGTTTATTTATCAGGTTTGG+TGG 0.486619 1_3:-55450215 Msa0126370:intron
CTCTATGTTGATAAAGAGAC+AGG 0.489825 1_3:-55452691 Msa0126370:CDS
GGTATGTGATAATCATCCTC+AGG 0.490183 1_3:-55450765 Msa0126370:CDS
AAGGCGCACCATCCAAAAGT+TGG 0.491090 1_3:+55452528 None:intergenic
CCATGGAACATTAACGCCAT+TGG 0.492816 1_3:-55449643 Msa0126370:three_prime_UTR
CCTGCAGTTGAAGACGAATT+GGG 0.493187 1_3:+55455917 None:intergenic
GATTCCGATGTCTGTCTCCC+TGG 0.495254 1_3:-55452489 Msa0126370:CDS
TCTTGCAATATTTCAAGGCC+TGG 0.496929 1_3:+55450033 None:intergenic
GCTTCGGAATTCGGTGGTGG+TGG 0.497213 1_3:-55455439 Msa0126370:CDS
CAAGTATGGAATTATAAAAG+AGG 0.501539 1_3:-55453498 Msa0126370:intron
AATTTAATTAGTAGTCGAAT+GGG 0.502642 1_3:-55449773 Msa0126370:three_prime_UTR
TGGAAGACAAAATGCTTGGA+TGG 0.504268 1_3:-55452243 Msa0126370:CDS
AATACCAGTGTGGTAGCTGT+TGG 0.507660 1_3:-55453886 Msa0126370:CDS
GAATGCTAATCTCACATCAC+AGG 0.509001 1_3:+55449609 None:intergenic
AATTAACCATGCCACAGTCC+GGG 0.512168 1_3:-55450159 Msa0126370:CDS
CCTCTCGCCCGTGCGTGGAT+CGG 0.515772 1_3:+55456449 None:intergenic
CTAATAAACCTCCTGACAGT+TGG 0.516022 1_3:-55453681 Msa0126370:CDS
ATACCAGTGTGGTAGCTGTT+GGG 0.517744 1_3:-55453885 Msa0126370:CDS
TAAGGAGGCTGAGGCGCAAG+TGG 0.518541 1_3:-55455464 Msa0126370:CDS
TGCAAGAACCCCGAAGCTCA+TGG 0.518989 1_3:-55450017 Msa0126370:three_prime_UTR
GAATTTAATTAGTAGTCGAA+TGG 0.519758 1_3:-55449774 Msa0126370:three_prime_UTR
ACGTTCCTCTCGCCCGTGCG+TGG 0.520312 1_3:+55456444 None:intergenic
GAAGAATTTACTGATGATGA+TGG 0.523794 1_3:-55455367 Msa0126370:CDS
AGATAAACCTGAAGAAAAGA+AGG 0.526119 1_3:-55453848 Msa0126370:intron
CAAGGACAGAAAAGGTGCTC+AGG 0.526794 1_3:-55450723 Msa0126370:CDS
CAGTTTGGTGAGGAACTTGA+AGG 0.531731 1_3:-55450107 Msa0126370:CDS
GGTGAAAATGTCGCAGATGT+TGG 0.532231 1_3:-55456197 Msa0126370:CDS
ATATCAACCCTCATTTCAGC+AGG 0.537601 1_3:+55451387 None:intergenic
TCATCAATAGTAACATCCTC+AGG 0.539668 1_3:+55453616 None:intergenic
TGCACCTCAGAGAAGACATA+AGG 0.541988 1_3:+55456137 None:intergenic
GTGTGGTAGCTGTTGGGAAG+AGG 0.542110 1_3:-55453879 Msa0126370:CDS
TGTTCAGTCCTGCTGAAATG+AGG 0.543568 1_3:-55451395 Msa0126370:CDS
AGAGGAAGATGCTAAGCGAT+TGG 0.545342 1_3:-55450132 Msa0126370:CDS
GGAAGACAAAATGCTTGGAT+GGG 0.546076 1_3:-55452242 Msa0126370:CDS
CTGGCTAAATTTCAGCAGAA+AGG 0.546970 1_3:-55452470 Msa0126370:intron
TATACTGTTGCATTAGATGA+TGG 0.551989 1_3:-55449729 Msa0126370:three_prime_UTR
TAGCATCTTCCTCTAGATCC+CGG 0.556991 1_3:+55450141 None:intergenic
TGGTAGCGCTTTGCCTTATG+GGG 0.557580 1_3:-55454046 Msa0126370:CDS
GAAGCTTCGGAATTCGGTGG+TGG 0.562716 1_3:-55455442 Msa0126370:CDS
GAGTCTTAGGGCATATAAGC+GGG 0.570694 1_3:-55455326 Msa0126370:CDS
CCAATGGCGTTAATGTTCCA+TGG 0.573495 1_3:+55449643 None:intergenic
AAGAATTTACTGATGATGAT+GGG 0.578013 1_3:-55455366 Msa0126370:CDS
AAGTTGGAAGACAAAATGCT+TGG 0.578949 1_3:-55452247 Msa0126370:CDS
ATGATGATGGGACATATAAG+TGG 0.580341 1_3:-55455354 Msa0126370:CDS
CTAGATCCCGGACTGTGGCA+TGG 0.581437 1_3:+55450153 None:intergenic
TAGAATTGATGAATGGAAGA+TGG 0.583366 1_3:-55450694 Msa0126370:intron
GCATCAGAATCAGTTACTAT+CGG 0.583746 1_3:+55453985 None:intergenic
CCGATCCACGCACGGGCGAG+AGG 0.583798 1_3:-55456449 Msa0126370:five_prime_UTR
TAGCGTGTACCAGTAGGTTG+CGG 0.584652 1_3:+55456287 None:intergenic
TCACAGTTCCTAATAAGTCC+AGG 0.585329 1_3:-55450051 Msa0126370:three_prime_UTR
AAAGGAGATTAAGGAGGCTG+AGG 0.585827 1_3:-55455473 Msa0126370:CDS
TGCATTGGTTACATATCTCA+AGG 0.589361 1_3:-55452653 Msa0126370:intron
ATACACATGTTTATGTCACT+GGG 0.589425 1_3:-55453642 Msa0126370:CDS
AATTGTAGCCGATCCACGCA+CGG 0.590738 1_3:-55456457 None:intergenic
AAGCTGACAAAGACAATAGA+CGG 0.593819 1_3:-55452285 Msa0126370:CDS
GCGTGCATAGAATTGATGAA+TGG 0.595667 1_3:-55450701 Msa0126370:CDS
TATGTCTTCTCTGAGGTGCA+AGG 0.604699 1_3:-55456134 Msa0126370:intron
GAAGACAAAATGCTTGGATG+GGG 0.605978 1_3:-55452241 Msa0126370:intron
GCGATTGGAGCAGTTTGGTG+AGG 0.606680 1_3:-55450117 Msa0126370:CDS
AGGCAAAGCGCTACCAGACG+TGG 0.611672 1_3:+55454053 None:intergenic
GGAGAGAATCAACAACAACT+TGG 0.615030 1_3:-55456161 Msa0126370:CDS
ATTGTAGCCGATCCACGCAC+GGG 0.615763 1_3:-55456456 None:intergenic
GACATCGGAATCTTATCACC+AGG 0.616948 1_3:+55452500 None:intergenic
AATTCAGAAATTGAAGACAA+AGG 0.617573 1_3:+55455965 None:intergenic
TGGATTGCTAGAGCCACTGA+TGG 0.618240 1_3:+55452548 None:intergenic
AGACCTTCAACACCGCCTGA+TGG 0.618261 1_3:-55455394 Msa0126370:CDS
TTATGCTGAGGCTGAAGATG+TGG 0.619425 1_3:-55455515 Msa0126370:CDS
TGGACCTATAGATGCAGTCA+AGG 0.623091 1_3:-55450984 Msa0126370:intron
TTGTTATGTAGTTTATGCTG+AGG 0.623808 1_3:-55455527 Msa0126370:intron
TTCCTCTAGATCCCGGACTG+TGG 0.624191 1_3:+55450148 None:intergenic
TGCCACAGTCCGGGATCTAG+AGG 0.625882 1_3:-55450150 Msa0126370:CDS
TGGTCCTTATGTCTTCTCTG+AGG 0.627862 1_3:-55456141 Msa0126370:CDS
ATCAACATAGAGCTTAACAC+GGG 0.630935 1_3:+55452702 None:intergenic
AATTCAAACCAACTGTCAGG+AGG 0.631486 1_3:+55453673 None:intergenic
TTATGTCACTGGGTTGCCTG+AGG 0.633023 1_3:-55453632 Msa0126370:CDS
GTTCAGTCCTGCTGAAATGA+GGG 0.634321 1_3:-55451394 Msa0126370:intron
AGAGTCTTAGGGCATATAAG+CGG 0.635019 1_3:-55455327 Msa0126370:CDS
TCGTCGTCTCTAGAAACCAC+GGG 0.636897 1_3:-55456422 Msa0126370:five_prime_UTR
TGTATATCAGGAACCATCAG+TGG 0.638535 1_3:-55452561 Msa0126370:intron
TATTCGCTACAGTGGCAGCA+AGG 0.639308 1_3:+55456374 None:intergenic
ACAGGGTCAATCAACACCAA+TGG 0.642531 1_3:+55449627 None:intergenic
AAAATGTCGCAGATGTTGGA+TGG 0.645277 1_3:-55456193 Msa0126370:CDS
TAAGTGGGATAAGAGTCTTA+GGG 0.645357 1_3:-55455338 Msa0126370:CDS
TTTCTGCTGAAATTTAGCCA+GGG 0.652648 1_3:+55452472 None:intergenic
CTTCCCAACAGCTACCACAC+TGG 0.656887 1_3:+55453882 None:intergenic
CAGGACTGAACATATAGCGA+AGG 0.659719 1_3:+55451406 None:intergenic
GTATGTGATAATCATCCTCA+GGG 0.661661 1_3:-55450764 Msa0126370:CDS
GTCGTCGTCTCTAGAAACCA+CGG 0.668195 1_3:-55456423 Msa0126370:five_prime_UTR
AATGCTAATCTCACATCACA+GGG 0.669904 1_3:+55449610 None:intergenic
TGGGTTTCTATTCGCTACAG+TGG 0.670571 1_3:+55456366 None:intergenic
GGTCTGAAGGAAGAACTGAA+TGG 0.672653 1_3:-55455991 Msa0126370:CDS
GTGGAAGCTTCGGAATTCGG+TGG 0.675726 1_3:-55455445 Msa0126370:CDS
TTAGCCAGGGAGACAGACAT+CGG 0.680304 1_3:+55452485 None:intergenic
ATGGCAAAAGGAGATTAAGG+AGG 0.680476 1_3:-55455479 Msa0126370:CDS
AATTCTTCTTCACCATCAGG+CGG 0.682237 1_3:+55455382 None:intergenic
TATCAACATAGAGCTTAACA+CGG 0.691544 1_3:+55452701 None:intergenic
TGATGATGGGACATATAAGT+GGG 0.715635 1_3:-55455353 Msa0126370:CDS
ATGCAATGAAAGAGTGCCCG+TGG 0.722032 1_3:+55456406 None:intergenic
TTAACCAAAACAACACCCTG+AGG 0.735800 1_3:+55450749 None:intergenic
GTAGTAATCCATGAGCTTCG+GGG 0.736991 1_3:+55450009 None:intergenic
ATACATGCCAGTGAAGACGA+TGG 0.748904 1_3:-55450185 Msa0126370:CDS
TCAACATAGAGCTTAACACG+GGG 0.786913 1_3:+55452703 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAATTTATTTGCTTT+TGG - chr1_3:55450444-55450463 Msa0126370:intron 10.0%
!!! TTTAAAATTTATTTGCTTTT+GGG - chr1_3:55450445-55450464 Msa0126370:intron 10.0%
!! TAAAATTAATACTTTATGTT+TGG - chr1_3:55451188-55451207 Msa0126370:intron 10.0%
!!! TACTTTTCTTTTTTAAATTA+CGG + chr1_3:55451662-55451681 None:intergenic 10.0%
!! AAAAAAAAAAGTTCATTATT+AGG - chr1_3:55453186-55453205 Msa0126370:intron 10.0%
!! AATCTATATTAAATGAAAAA+GGG + chr1_3:55453906-55453925 None:intergenic 10.0%
!! AAATCTATATTAAATGAAAA+AGG + chr1_3:55453907-55453926 None:intergenic 10.0%
!!! TTTGTTATTATTATTTACTG+TGG - chr1_3:55450471-55450490 Msa0126370:intron 15.0%
!! TATTATGATTAACATAAGAT+AGG - chr1_3:55450810-55450829 Msa0126370:intron 15.0%
!! GATTATAAAATTGATAGAAA+AGG + chr1_3:55451762-55451781 None:intergenic 15.0%
!!! TTTTATAATCAAAACTTTGA+TGG - chr1_3:55451772-55451791 Msa0126370:intron 15.0%
!! TTTCAATAAAATAAAACCTA+GGG + chr1_3:55451868-55451887 None:intergenic 15.0%
!!! TGTTTTTCTATTTTTTCTTT+TGG - chr1_3:55451927-55451946 Msa0126370:intron 15.0%
!!! GTTTTTCTATTTTTTCTTTT+GGG - chr1_3:55451928-55451947 Msa0126370:intron 15.0%
!!! GTTCATCTTATTTATATAAA+TGG - chr1_3:55452229-55452248 Msa0126370:intron 15.0%
!!! AAATATAACAGATACTTTTA+AGG + chr1_3:55452654-55452673 None:intergenic 15.0%
!! GTATCTGTTATATTTAATTA+AGG - chr1_3:55452659-55452678 Msa0126370:CDS 15.0%
!!! TGATAATATGCAATATATTT+TGG + chr1_3:55452751-55452770 None:intergenic 15.0%
!! AAATCCTCATAAAAAATATA+TGG + chr1_3:55452838-55452857 None:intergenic 15.0%
!!! ATATATTTTTTATGAGGATT+TGG - chr1_3:55452837-55452856 Msa0126370:intron 15.0%
!! GATATACACAAATATATAAT+TGG + chr1_3:55453466-55453485 None:intergenic 15.0%
!! ATTATATATTTGTGTATATC+AGG - chr1_3:55453466-55453485 Msa0126370:intron 15.0%
!! ATCTATATTAAATGAAAAAG+GGG + chr1_3:55453905-55453924 None:intergenic 15.0%
!!! TTACTTTTAACAATTATAGT+AGG - chr1_3:55454863-55454882 Msa0126370:intron 15.0%
!!! TCAATTACATTAATCTTTTA+AGG + chr1_3:55455097-55455116 None:intergenic 15.0%
!! TTAATTTCAACATAAACACA+GGG + chr1_3:55449951-55449970 None:intergenic 20.0%
!!! TTTAATTTCAACATAAACAC+AGG + chr1_3:55449952-55449971 None:intergenic 20.0%
!!! ATAAAAGTGTATTTTCTGAT+AGG + chr1_3:55450028-55450047 None:intergenic 20.0%
!!! TATCAGAAAATACACTTTTA+TGG - chr1_3:55450027-55450046 Msa0126370:three_prime_UTR 20.0%
!!! AAAAGTTAAGCTTTAATTCA+TGG + chr1_3:55450400-55450419 None:intergenic 20.0%
!! GTTTCAATAAAATAAAACCT+AGG + chr1_3:55451869-55451888 None:intergenic 20.0%
!!! GTTTTATTTTATTGAAACCA+AGG - chr1_3:55451871-55451890 Msa0126370:intron 20.0%
!! TAATGAAATTGTTATGTGAT+AGG - chr1_3:55451957-55451976 Msa0126370:intron 20.0%
!! AAAGATGAGAAAAAATAAGT+GGG + chr1_3:55452261-55452280 None:intergenic 20.0%
!! AAAGGAATATAGGAATAAAA+AGG + chr1_3:55452569-55452588 None:intergenic 20.0%
!!! TTGATTTTACAATTCAACAA+AGG + chr1_3:55452587-55452606 None:intergenic 20.0%
!! AAAATCAAACTATAATGCTT+AGG - chr1_3:55452599-55452618 Msa0126370:intron 20.0%
!! TATAATGCTTAGGTATATAT+CGG - chr1_3:55452609-55452628 Msa0126370:intron 20.0%
!! AAAAAAAGTTCATTATTAGG+TGG - chr1_3:55453189-55453208 Msa0126370:intron 20.0%
!!! AGTGTTTTTATAATTGTACT+TGG - chr1_3:55453625-55453644 Msa0126370:CDS 20.0%
!! AAAATCAACTTGAATAAAGT+TGG + chr1_3:55453836-55453855 None:intergenic 20.0%
!!! TTTATTCAAGTTGATTTTTC+AGG - chr1_3:55453838-55453857 Msa0126370:intron 20.0%
!! AGATGCAAAAATTGATATAA+AGG + chr1_3:55454171-55454190 None:intergenic 20.0%
!! AGATTCATATTTCATAAGTT+AGG - chr1_3:55454238-55454257 Msa0126370:intron 20.0%
!!! TATGTTTAGTTTAGAGTTTT+TGG - chr1_3:55454475-55454494 Msa0126370:intron 20.0%
!! AGAAAAAAAATCCTGAAAAT+AGG + chr1_3:55455148-55455167 None:intergenic 20.0%
!! ATGACAAAAGTTAATATTCT+CGG + chr1_3:55455795-55455814 None:intergenic 20.0%
!! GAAAAGAAAAAGGAAATTAT+AGG - chr1_3:55456118-55456137 Msa0126370:intron 20.0%
!! AATTTAATTAGTAGTCGAAT+GGG - chr1_3:55456266-55456285 Msa0126370:intron 20.0%
!! AAAACGATGAATTCTGAAAA+TGG - chr1_3:55449710-55449729 Msa0126370:three_prime_UTR 25.0%
!! ATTTCAGAGCATTTCTTAAA+TGG - chr1_3:55449999-55450018 Msa0126370:three_prime_UTR 25.0%
! AATTCAGAAATTGAAGACAA+AGG + chr1_3:55450077-55450096 None:intergenic 25.0%
! TGTCTTCAATTTCTGAATTA+TGG - chr1_3:55450078-55450097 Msa0126370:three_prime_UTR 25.0%
! GTCTTCAATTTCTGAATTAT+GGG - chr1_3:55450079-55450098 Msa0126370:three_prime_UTR 25.0%
! ATCTAACAGATATGATTGAT+TGG - chr1_3:55450354-55450373 Msa0126370:intron 25.0%
! ATTATTATTTACTGTGGACT+TGG - chr1_3:55450477-55450496 Msa0126370:intron 25.0%
!! AAGAATTTACTGATGATGAT+GGG - chr1_3:55450673-55450692 Msa0126370:intron 25.0%
!!! TTAACTAAATTTTGATGCCT+AGG - chr1_3:55450841-55450860 Msa0126370:intron 25.0%
! GCATAATAGTTAAAACTCTA+AGG + chr1_3:55450897-55450916 None:intergenic 25.0%
! ACCTGATTTATTGAATACAT+TGG - chr1_3:55450973-55450992 Msa0126370:intron 25.0%
! ACCAATGTATTCAATAAATC+AGG + chr1_3:55450977-55450996 None:intergenic 25.0%
!!! TCTTGTTTTAGATTTTGCAT+AGG - chr1_3:55451012-55451031 Msa0126370:CDS 25.0%
!!! AGTTACTAGTTAGTTTGTTA+CGG + chr1_3:55451151-55451170 None:intergenic 25.0%
!!! AGATTTTTTGAGAACTAGTT+TGG + chr1_3:55451411-55451430 None:intergenic 25.0%
!!! AAGTCCGAAACAATTTTTTT+AGG - chr1_3:55451465-55451484 Msa0126370:intron 25.0%
!!! AGTCCGAAACAATTTTTTTA+GGG - chr1_3:55451466-55451485 Msa0126370:intron 25.0%
! ACACCCTAAAAAAATTGTTT+CGG + chr1_3:55451472-55451491 None:intergenic 25.0%
! ATATGGATACATTTCCTTAA+GGG + chr1_3:55451729-55451748 None:intergenic 25.0%
! TTAAGGAAATGTATCCATAT+GGG - chr1_3:55451729-55451748 Msa0126370:intron 25.0%
!! ACTATCTTCAACAATTTTTG+AGG + chr1_3:55452079-55452098 None:intergenic 25.0%
! TAAATAAGATGAACAGATAG+CGG + chr1_3:55452223-55452242 None:intergenic 25.0%
! AAGATGAGAAAAAATAAGTG+GGG + chr1_3:55452260-55452279 None:intergenic 25.0%
! CAAAGATGAGAAAAAATAAG+TGG + chr1_3:55452262-55452281 None:intergenic 25.0%
! CAATGAATATAAGTAGTTTC+AGG + chr1_3:55452477-55452496 None:intergenic 25.0%
! CTGAAACTACTTATATTCAT+TGG - chr1_3:55452475-55452494 Msa0126370:CDS 25.0%
! ATTCATTGGAAAAACTAACA+TGG - chr1_3:55452489-55452508 Msa0126370:CDS 25.0%
! TTCATTGGAAAAACTAACAT+GGG - chr1_3:55452490-55452509 Msa0126370:CDS 25.0%
!! CTCTTTTATAATTCCATACT+TGG + chr1_3:55452543-55452562 None:intergenic 25.0%
! CAAGTATGGAATTATAAAAG+AGG - chr1_3:55452541-55452560 Msa0126370:CDS 25.0%
! ACAATTCAACAAAGGAATAT+AGG + chr1_3:55452579-55452598 None:intergenic 25.0%
!!! TATATCGGTTTTTCATGTTT+AGG - chr1_3:55452624-55452643 Msa0126370:intron 25.0%
! TTAATTAAGGAAAACACAGT+CGG - chr1_3:55452672-55452691 Msa0126370:CDS 25.0%
! AAAGTATATTGCCAAAAGTA+TGG - chr1_3:55452701-55452720 Msa0126370:CDS 25.0%
!! GAAATGTTAATCCATACTTT+TGG + chr1_3:55452715-55452734 None:intergenic 25.0%
!!! ATCACATGAAAGCATTTAAA+AGG + chr1_3:55452781-55452800 None:intergenic 25.0%
!!! ATGGCCATATATTTTTTATG+AGG - chr1_3:55452831-55452850 Msa0126370:intron 25.0%
! TATAATACACCAAAAATGGT+GGG + chr1_3:55453036-55453055 None:intergenic 25.0%
!!! AACTAAACTATGATTTTGAC+AGG + chr1_3:55453665-55453684 None:intergenic 25.0%
! GAAAAAGAAAACGAAAAAGT+TGG - chr1_3:55453776-55453795 Msa0126370:intron 25.0%
! GCTAAAATTAAGATGAATTG+GGG + chr1_3:55453876-55453895 None:intergenic 25.0%
! GGCTAAAATTAAGATGAATT+GGG + chr1_3:55453877-55453896 None:intergenic 25.0%
! AGGCTAAAATTAAGATGAAT+TGG + chr1_3:55453878-55453897 None:intergenic 25.0%
! TTAAATGAAAAAGGGGAATT+AGG + chr1_3:55453898-55453917 None:intergenic 25.0%
! TTGGAAAAATATCTACAAGA+AGG + chr1_3:55453931-55453950 None:intergenic 25.0%
!! TATTTTTCCAATTTACCAGA+TGG - chr1_3:55453940-55453959 Msa0126370:CDS 25.0%
! ACATTTCCATAAATACTGAT+AGG - chr1_3:55454082-55454101 Msa0126370:intron 25.0%
!! TCTTTTCCTATCAGTATTTA+TGG + chr1_3:55454091-55454110 None:intergenic 25.0%
! AACTAAACATAAATCTGAGA+TGG + chr1_3:55454466-55454485 None:intergenic 25.0%
!!! TTTAGAGTTTTTGGATGATT+TGG - chr1_3:55454484-55454503 Msa0126370:intron 25.0%
!! CTAATGTGATTTTCATTGTA+TGG - chr1_3:55454562-55454581 Msa0126370:intron 25.0%
! TATAACCAAATCCAAAATGA+TGG + chr1_3:55454749-55454768 None:intergenic 25.0%
! TAATATTGCTTAATCTGTTC+AGG - chr1_3:55454974-55454993 Msa0126370:intron 25.0%
! AAAATCCTGAAAATAGGATA+TGG + chr1_3:55455142-55455161 None:intergenic 25.0%
!!! TGTTGTTTTGGTTAAATTCA+AGG - chr1_3:55455298-55455317 Msa0126370:intron 25.0%
! ATAATGACTAAAACAAGATC+TGG + chr1_3:55455504-55455523 None:intergenic 25.0%
!!! TATTTTAATAGCACCTAAAC+TGG + chr1_3:55455531-55455550 None:intergenic 25.0%
!!! AATAGTAACGTAACTTGTTT+TGG - chr1_3:55455547-55455566 Msa0126370:intron 25.0%
!!! AAACAATCATTTTTCCTTGT+GGG - chr1_3:55455634-55455653 Msa0126370:intron 25.0%
! TTACAGTGTTACAATGAAAT+TGG - chr1_3:55455695-55455714 Msa0126370:intron 25.0%
! TGACAAAAGTTAATATTCTC+GGG + chr1_3:55455794-55455813 None:intergenic 25.0%
!!! AACTTTTGTCATACTTTTTC+TGG - chr1_3:55455803-55455822 Msa0126370:intron 25.0%
!!! CTTTTTCTGGTTTATTTATC+AGG - chr1_3:55455816-55455835 Msa0126370:intron 25.0%
!! TATTAGTTCTCTTGTATCAT+TGG - chr1_3:55456096-55456115 Msa0126370:intron 25.0%
! TGTATCATTGGAAAAGAAAA+AGG - chr1_3:55456108-55456127 Msa0126370:intron 25.0%
! AAGAAAAAGGAAATTATAGG+AGG - chr1_3:55456121-55456140 Msa0126370:intron 25.0%
! TTTGACTACCATATCTTATT+TGG - chr1_3:55456158-55456177 Msa0126370:CDS 25.0%
!! GCAATTTTCCAAATAAGATA+TGG + chr1_3:55456169-55456188 None:intergenic 25.0%
! GTGTTATAATACTCATGATT+TGG + chr1_3:55456213-55456232 None:intergenic 25.0%
! GAATTTAATTAGTAGTCGAA+TGG - chr1_3:55456265-55456284 Msa0126370:intron 25.0%
! TTCAGAATTCATCGTTTTCT+TGG + chr1_3:55449708-55449727 None:intergenic 30.0%
AGTTAAAACAGAAATTGCTG+CGG + chr1_3:55449808-55449827 None:intergenic 30.0%
!! CTCTGAAATGTAAATTAGCA+AGG + chr1_3:55449988-55450007 None:intergenic 30.0%
! AATACACTTTTATGGTCTGA+AGG - chr1_3:55450035-55450054 Msa0126370:three_prime_UTR 30.0%
! GATTTGAAATCTGTATCTTG+AGG - chr1_3:55450253-55450272 Msa0126370:intron 30.0%
TTGTTATGTAGTTTATGCTG+AGG - chr1_3:55450512-55450531 Msa0126370:intron 30.0%
AAAATGGCAAAAGGAGATTA+AGG - chr1_3:55450557-55450576 Msa0126370:intron 30.0%
! GAAGAATTTACTGATGATGA+TGG - chr1_3:55450672-55450691 Msa0126370:intron 30.0%
!! AAATTTTGATGCCTAGGATT+TGG - chr1_3:55450847-55450866 Msa0126370:intron 30.0%
!! AATTTTGATGCCTAGGATTT+GGG - chr1_3:55450848-55450867 Msa0126370:intron 30.0%
!!! TACATTGGTTTTGAAATGAC+AGG - chr1_3:55450988-55451007 Msa0126370:CDS 30.0%
!!! AGGGAAATTTTTAGCAATAG+GGG + chr1_3:55451124-55451143 None:intergenic 30.0%
!!! GAGGGAAATTTTTAGCAATA+GGG + chr1_3:55451125-55451144 None:intergenic 30.0%
CAAAAAGACACTGCTATAAA+GGG - chr1_3:55451435-55451454 Msa0126370:CDS 30.0%
!!! CAATTTTTTTAGGGTGTGTT+TGG - chr1_3:55451475-55451494 Msa0126370:intron 30.0%
CATATGGATACATTTCCTTA+AGG + chr1_3:55451730-55451749 None:intergenic 30.0%
CTTAAGGAAATGTATCCATA+TGG - chr1_3:55451728-55451747 Msa0126370:intron 30.0%
GAAAAGGAAATATTCCCATA+TGG + chr1_3:55451746-55451765 None:intergenic 30.0%
GTATTAATCTCAATTTCCCT+AGG - chr1_3:55451849-55451868 Msa0126370:intron 30.0%
TGAAATTGTTATGTGATAGG+AGG - chr1_3:55451960-55451979 Msa0126370:intron 30.0%
AACTTCCTCTTCTTTCAAAA+AGG + chr1_3:55452031-55452050 None:intergenic 30.0%
!! TTCAGTTGTTTCTTCCTTTA+TGG + chr1_3:55452127-55452146 None:intergenic 30.0%
AGATAAACCTGAAGAAAAGA+AGG - chr1_3:55452191-55452210 Msa0126370:intron 30.0%
! TTAGAAATGAGTACCTCTTT+TGG - chr1_3:55452292-55452311 Msa0126370:CDS 30.0%
! TAGAAATGAGTACCTCTTTT+GGG - chr1_3:55452293-55452312 Msa0126370:CDS 30.0%
! TGTCATTTATTTCCCAAAAG+AGG + chr1_3:55452308-55452327 None:intergenic 30.0%
TTTAATTCAAACCAACTGTC+AGG + chr1_3:55452372-55452391 None:intergenic 30.0%
!! TGACAGTTGGTTTGAATTAA+AGG - chr1_3:55452371-55452390 Msa0126370:intron 30.0%
AATACACATGTTTATGTCAC+TGG - chr1_3:55452396-55452415 Msa0126370:intron 30.0%
ATACACATGTTTATGTCACT+GGG - chr1_3:55452397-55452416 Msa0126370:intron 30.0%
TGGATTAACATTTCTACACA+TGG - chr1_3:55452721-55452740 Msa0126370:CDS 30.0%
!!! GTGTTATTTATTTTCGGTCA+GGG + chr1_3:55452903-55452922 None:intergenic 30.0%
!!! TGTGTTATTTATTTTCGGTC+AGG + chr1_3:55452904-55452923 None:intergenic 30.0%
GACCGAAAATAAATAACACA+AGG - chr1_3:55452904-55452923 Msa0126370:intron 30.0%
!!! GGCCTTGTGTTATTTATTTT+CGG + chr1_3:55452909-55452928 None:intergenic 30.0%
TGTCTTGCCAAAGATTAAAA+GGG - chr1_3:55452962-55452981 Msa0126370:intron 30.0%
GTATAATACACCAAAAATGG+TGG + chr1_3:55453037-55453056 None:intergenic 30.0%
TGCGTATAATACACCAAAAA+TGG + chr1_3:55453040-55453059 None:intergenic 30.0%
TATCAACATAGAGCTTAACA+CGG + chr1_3:55453341-55453360 None:intergenic 30.0%
TAAAGAGACAGGAAGAAAAA+AGG - chr1_3:55453359-55453378 Msa0126370:intron 30.0%
AAAGAGACAGGAAGAAAAAA+GGG - chr1_3:55453360-55453379 Msa0126370:intron 30.0%
!! TAAACTATGATTTTGACAGG+TGG + chr1_3:55453662-55453681 None:intergenic 30.0%
TATTTAAAGAAAGCTCCATC+AGG + chr1_3:55453708-55453727 None:intergenic 30.0%
ATTTACACCATCTGGTAAAT+TGG + chr1_3:55453950-55453969 None:intergenic 30.0%
AATTTACCAGATGGTGTAAA+TGG - chr1_3:55453949-55453968 Msa0126370:CDS 30.0%
ATGGAAATGTTTATCGAAAC+TGG + chr1_3:55454072-55454091 None:intergenic 30.0%
ACTTATGAAAAAGCTAGATG+AGG + chr1_3:55454212-55454231 None:intergenic 30.0%
!! TTGAATTAGCTTTGAGCTTA+TGG + chr1_3:55454294-55454313 None:intergenic 30.0%
GCTCAAAGCTAATTCAAATT+TGG - chr1_3:55454297-55454316 Msa0126370:intron 30.0%
CAGAAGCAAATTGAAAAACA+TGG + chr1_3:55454394-55454413 None:intergenic 30.0%
!! CATGTTTTTCAATTTGCTTC+TGG - chr1_3:55454392-55454411 Msa0126370:intron 30.0%
ACTAGAAGAAGATGTTAAAG+AGG - chr1_3:55455019-55455038 Msa0126370:intron 30.0%
TGAAAATAGGATATGGTTAC+AGG + chr1_3:55455135-55455154 None:intergenic 30.0%
! TGTAACCATATCCTATTTTC+AGG - chr1_3:55455134-55455153 Msa0126370:intron 30.0%
GAAAGTAGTATCACTGTTAT+TGG + chr1_3:55455185-55455204 None:intergenic 30.0%
GTTAAATTCAAGGACAGAAA+AGG - chr1_3:55455308-55455327 Msa0126370:intron 30.0%
TAGAATTGATGAATGGAAGA+TGG - chr1_3:55455345-55455364 Msa0126370:CDS 30.0%
AAGAAGAAAACGGATAAACA+AGG + chr1_3:55455380-55455399 None:intergenic 30.0%
AGTCATTATTCAACCAGTTT+AGG - chr1_3:55455515-55455534 Msa0126370:CDS 30.0%
!! GAAACAATCATTTTTCCTTG+TGG - chr1_3:55455633-55455652 Msa0126370:intron 30.0%
TCGGGATATGTAAAAATGAA+AGG + chr1_3:55455776-55455795 None:intergenic 30.0%
! TCTGGTTTATTTATCAGGTT+TGG - chr1_3:55455821-55455840 Msa0126370:intron 30.0%
ATTTGGAAAATTGCGACATT+CGG - chr1_3:55456175-55456194 Msa0126370:CDS 30.0%
TATACTGTTGCATTAGATGA+TGG - chr1_3:55456310-55456329 Msa0126370:CDS 30.0%
! GTTTTCTTGGAGCAATTTCT+GGG + chr1_3:55449695-55449714 None:intergenic 35.0%
GATTTCAAATCACCTCATGA+CGG + chr1_3:55450244-55450263 None:intergenic 35.0%
AAAATTCTTACCACTGAGCT+AGG - chr1_3:55450285-55450304 Msa0126370:intron 35.0%
ATGTGGACGAGTTTGAAAAA+TGG - chr1_3:55450541-55450560 Msa0126370:intron 35.0%
CGAGTTTGAAAAATGGCAAA+AGG - chr1_3:55450548-55450567 Msa0126370:intron 35.0%
GTAAATTCTTCTTCACCATC+AGG + chr1_3:55450663-55450682 None:intergenic 35.0%
!! ATGATGATGGGACATATAAG+TGG - chr1_3:55450685-55450704 Msa0126370:intron 35.0%
!! TGATGATGGGACATATAAGT+GGG - chr1_3:55450686-55450705 Msa0126370:intron 35.0%
ATAAGTGGGATAAGAGTCTT+AGG - chr1_3:55450700-55450719 Msa0126370:CDS 35.0%
TAAGTGGGATAAGAGTCTTA+GGG - chr1_3:55450701-55450720 Msa0126370:CDS 35.0%
!! ATTTTGATGCCTAGGATTTG+GGG - chr1_3:55450849-55450868 Msa0126370:intron 35.0%
TATTATGCTCGAAGCTTATG+TGG - chr1_3:55450909-55450928 Msa0126370:intron 35.0%
! AGATTTTGCATAGGTCACAT+AGG - chr1_3:55451021-55451040 Msa0126370:CDS 35.0%
!!! GGAGGGAAATTTTTAGCAAT+AGG + chr1_3:55451126-55451145 None:intergenic 35.0%
!! ACTAGTTAGTTTGTTACGGA+GGG + chr1_3:55451147-55451166 None:intergenic 35.0%
!! TACTAGTTAGTTTGTTACGG+AGG + chr1_3:55451148-55451167 None:intergenic 35.0%
TGTTTGGCATCTTGTCAAAT+TGG - chr1_3:55451204-55451223 Msa0126370:intron 35.0%
TAAAGCACAGACAGTACATT+TGG - chr1_3:55451241-55451260 Msa0126370:intron 35.0%
! CCTTTATAGCAGTGTCTTTT+TGG + chr1_3:55451437-55451456 None:intergenic 35.0%
CCAAAAAGACACTGCTATAA+AGG - chr1_3:55451434-55451453 Msa0126370:CDS 35.0%
ATTCAGAGAATCAACAACCT+TGG + chr1_3:55451891-55451910 None:intergenic 35.0%
AATTGTTATGTGATAGGAGG+AGG - chr1_3:55451963-55451982 Msa0126370:intron 35.0%
!! GATGACCTTTTTGAAAGAAG+AGG - chr1_3:55452023-55452042 Msa0126370:intron 35.0%
GCATCAGAATCAGTTACTAT+CGG + chr1_3:55452057-55452076 None:intergenic 35.0%
! TGTTTCTGCAACTTCCATAA+AGG - chr1_3:55452110-55452129 Msa0126370:intron 35.0%
TGAAGCAAAAAATACCAGTG+TGG - chr1_3:55452143-55452162 Msa0126370:intron 35.0%
TCATCAATAGTAACATCCTC+AGG + chr1_3:55452426-55452445 None:intergenic 35.0%
ACTAACATGGGCAATATTGT+AGG - chr1_3:55452502-55452521 Msa0126370:CDS 35.0%
! GTGGAAACATTTTCCAAGTA+TGG - chr1_3:55452527-55452546 Msa0126370:CDS 35.0%
! AATCTTTGGCAAGACACTTT+TGG + chr1_3:55452958-55452977 None:intergenic 35.0%
GTGTCTTGCCAAAGATTAAA+AGG - chr1_3:55452961-55452980 Msa0126370:intron 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr1_3:55453064-55453083 None:intergenic 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - chr1_3:55453064-55453083 Msa0126370:intron 35.0%
AGCCTCTTGTGTAAAAAACA+GGG + chr1_3:55453069-55453088 None:intergenic 35.0%
!!! GAAAACATCAGACTAGCTTT+TGG - chr1_3:55453230-55453249 Msa0126370:intron 35.0%
CATGCAATTCATATGAAGCT+GGG + chr1_3:55453273-55453292 None:intergenic 35.0%
TCATGCAATTCATATGAAGC+TGG + chr1_3:55453274-55453293 None:intergenic 35.0%
! GAACTGATTCTGTTTGAAAC+AGG - chr1_3:55453296-55453315 Msa0126370:intron 35.0%
ATCAACATAGAGCTTAACAC+GGG + chr1_3:55453340-55453359 None:intergenic 35.0%
! CTCTATGTTGATAAAGAGAC+AGG - chr1_3:55453348-55453367 Msa0126370:intron 35.0%
AAGAAAAAAGGGAGATGCAT+TGG - chr1_3:55453371-55453390 Msa0126370:intron 35.0%
!! TGCATTGGTTACATATCTCA+AGG - chr1_3:55453386-55453405 Msa0126370:intron 35.0%
AATTCAAAGCTACGTATCAC+AGG + chr1_3:55453432-55453451 None:intergenic 35.0%
!! TACGTAGCTTTGAATTTGTC+AGG - chr1_3:55453436-55453455 Msa0126370:intron 35.0%
!! ACGTAGCTTTGAATTTGTCA+GGG - chr1_3:55453437-55453456 Msa0126370:intron 35.0%
GGAGCTTTCTTTAAATATGC+AGG - chr1_3:55453711-55453730 Msa0126370:intron 35.0%
AAGCTGACAAAGACAATAGA+CGG - chr1_3:55453754-55453773 Msa0126370:intron 35.0%
AAGTTGGAAGACAAAATGCT+TGG - chr1_3:55453792-55453811 Msa0126370:intron 35.0%
ATTGATCCATTTACACCATC+TGG + chr1_3:55453958-55453977 None:intergenic 35.0%
! TTTGGATGATTTGGAGTTTC+TGG - chr1_3:55454493-55454512 Msa0126370:intron 35.0%
! TGATTTTCATTGTATGGCAC+AGG - chr1_3:55454568-55454587 Msa0126370:intron 35.0%
CTCTCAGTATTGCAATTTGT+TGG - chr1_3:55454925-55454944 Msa0126370:intron 35.0%
ACTGTTATTGGTACAGGTAT+GGG + chr1_3:55455173-55455192 None:intergenic 35.0%
AGTATCACTGTTATTGGTAC+AGG + chr1_3:55455179-55455198 None:intergenic 35.0%
GTATGTGATAATCATCCTCA+GGG - chr1_3:55455275-55455294 Msa0126370:intron 35.0%
! GAAAGTGCAGAAGAAGAAAA+CGG + chr1_3:55455390-55455409 None:intergenic 35.0%
! GTTTTCTTCTTCTGCACTTT+CGG - chr1_3:55455389-55455408 Msa0126370:CDS 35.0%
ACTAAAACAAGATCTGGAGA+AGG + chr1_3:55455498-55455517 None:intergenic 35.0%
!!! AAAACCTTTGAGCTTTTTCG+AGG - chr1_3:55455576-55455595 Msa0126370:intron 35.0%
!!! AAACCTTTGAGCTTTTTCGA+GGG - chr1_3:55455577-55455596 Msa0126370:intron 35.0%
!! GTTTGGCATTGATATCAGTA+AGG - chr1_3:55455599-55455618 Msa0126370:intron 35.0%
TTTCCTTGTGGGTAAAGTAT+AGG - chr1_3:55455645-55455664 Msa0126370:intron 35.0%
TTCCTTGTGGGTAAAGTATA+GGG - chr1_3:55455646-55455665 Msa0126370:intron 35.0%
GGTTTATTTATCAGGTTTGG+TGG - chr1_3:55455824-55455843 Msa0126370:intron 35.0%
AATTAAACCATCGTCTTCAC+TGG + chr1_3:55455864-55455883 None:intergenic 35.0%
AACTTGAAGGTGAATGAGTT+AGG - chr1_3:55455945-55455964 Msa0126370:CDS 35.0%
CTTATTAGGAACTGTGAATC+TGG + chr1_3:55455985-55456004 None:intergenic 35.0%
AATGCTAATCTCACATCACA+GGG + chr1_3:55456432-55456451 None:intergenic 35.0%
! CGTTTTCTTGGAGCAATTTC+TGG + chr1_3:55449696-55449715 None:intergenic 40.0%
!! TTTAACTGAGCTTGTTACGC+AGG - chr1_3:55449821-55449840 Msa0126370:three_prime_UTR 40.0%
AAAATGTCGCAGATGTTGGA+TGG - chr1_3:55449846-55449865 Msa0126370:three_prime_UTR 40.0%
GGAGAGAATCAACAACAACT+TGG - chr1_3:55449878-55449897 Msa0126370:three_prime_UTR 40.0%
!! CATAAACACAGGGCTTTGTT+TGG + chr1_3:55449941-55449960 None:intergenic 40.0%
AAGACGAATTGGGTCTTTGA+GGG + chr1_3:55450115-55450134 None:intergenic 40.0%
GACGGTTGTAAAATGGTCAA+TGG + chr1_3:55450226-55450245 None:intergenic 40.0%
! ACCATTTTACAACCGTCATG+AGG - chr1_3:55450229-55450248 Msa0126370:intron 40.0%
ACCTCATGACGGTTGTAAAA+TGG + chr1_3:55450233-55450252 None:intergenic 40.0%
ATGGCAAAAGGAGATTAAGG+AGG - chr1_3:55450560-55450579 Msa0126370:intron 40.0%
AATTCTTCTTCACCATCAGG+CGG + chr1_3:55450660-55450679 None:intergenic 40.0%
AGAGTCTTAGGGCATATAAG+CGG - chr1_3:55450712-55450731 Msa0126370:CDS 40.0%
TAAACCTAACCCCAAATCCT+AGG + chr1_3:55450861-55450880 None:intergenic 40.0%
TCGAAGCTTATGTGGTTCAT+AGG - chr1_3:55450917-55450936 Msa0126370:intron 40.0%
CGAAGCTTATGTGGTTCATA+GGG - chr1_3:55450918-55450937 Msa0126370:intron 40.0%
! ACACTGAAGGTGTATTAAGG+TGG - chr1_3:55451079-55451098 Msa0126370:intron 40.0%
! TGAACCTTCTGTCTTGTTGA+TGG - chr1_3:55451284-55451303 Msa0126370:intron 40.0%
! GAACCTTCTGTCTTGTTGAT+GGG - chr1_3:55451285-55451304 Msa0126370:intron 40.0%
AATCCCATCAACAAGACAGA+AGG + chr1_3:55451291-55451310 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG - chr1_3:55451482-55451501 Msa0126370:intron 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr1_3:55451483-55451502 Msa0126370:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr1_3:55451489-55451508 Msa0126370:intron 40.0%
GTGTTTGGATTGAGGGTTTA+GGG - chr1_3:55451490-55451509 Msa0126370:intron 40.0%
TGTTTGGATTGAGGGTTTAG+GGG - chr1_3:55451491-55451510 Msa0126370:intron 40.0%
! CATTTCCTTAAGGGTGTGTT+TGG + chr1_3:55451720-55451739 None:intergenic 40.0%
! ATAAGATGAACAGATAGCGG+CGG + chr1_3:55452220-55452239 None:intergenic 40.0%
TATTGACCTCATTCTGTTCC+AGG - chr1_3:55452332-55452351 Msa0126370:intron 40.0%
CTAATAAACCTCCTGACAGT+TGG - chr1_3:55452358-55452377 Msa0126370:intron 40.0%
AATTCAAACCAACTGTCAGG+AGG + chr1_3:55452369-55452388 None:intergenic 40.0%
ATGGGCAATATTGTAGGTTG+TGG - chr1_3:55452508-55452527 Msa0126370:CDS 40.0%
!! GCTAGTTCTAAAGAGTTGCT+TGG + chr1_3:55452930-55452949 None:intergenic 40.0%
! CAGGTTGCCCTTTTAATCTT+TGG + chr1_3:55452972-55452991 None:intergenic 40.0%
CAAAGATTAAAAGGGCAACC+TGG - chr1_3:55452970-55452989 Msa0126370:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG + chr1_3:55453070-55453089 None:intergenic 40.0%
!! TTACACAAGAGGCTGTTTTC+AGG - chr1_3:55453075-55453094 Msa0126370:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG + chr1_3:55453115-55453134 None:intergenic 40.0%
TTACCCTTCTGTCTTGCAAA+AGG - chr1_3:55453154-55453173 Msa0126370:intron 40.0%
! CAACCTTTTGCAAGACAGAA+GGG + chr1_3:55453160-55453179 None:intergenic 40.0%
! ACAACCTTTTGCAAGACAGA+AGG + chr1_3:55453161-55453180 None:intergenic 40.0%
!!! AACATCAGACTAGCTTTTGG+AGG - chr1_3:55453233-55453252 Msa0126370:intron 40.0%
!!! AGACTAGCTTTTGGAGGTTT+TGG - chr1_3:55453239-55453258 Msa0126370:intron 40.0%
TCAACATAGAGCTTAACACG+GGG + chr1_3:55453339-55453358 None:intergenic 40.0%
TGTATATCAGGAACCATCAG+TGG - chr1_3:55453478-55453497 Msa0126370:intron 40.0%
! CTAGCAATCCAACTTTTGGA+TGG - chr1_3:55453503-55453522 Msa0126370:CDS 40.0%
TAGTTAACTATCACTCCTGC+TGG - chr1_3:55453680-55453699 Msa0126370:CDS 40.0%
! ATTGTCTTTGTCAGCTTGCT+TGG + chr1_3:55453751-55453770 None:intergenic 40.0%
TGGAAGACAAAATGCTTGGA+TGG - chr1_3:55453796-55453815 Msa0126370:intron 40.0%
GGAAGACAAAATGCTTGGAT+GGG - chr1_3:55453797-55453816 Msa0126370:intron 40.0%
GAAGACAAAATGCTTGGATG+GGG - chr1_3:55453798-55453817 Msa0126370:intron 40.0%
TCAGTGAACTCAAGGATCAA+CGG + chr1_3:55453995-55454014 None:intergenic 40.0%
AAATGCACTCAGTGAACTCA+AGG + chr1_3:55454003-55454022 None:intergenic 40.0%
! TGAGTTCACTGAGTGCATTT+TGG - chr1_3:55454003-55454022 Msa0126370:CDS 40.0%
! TTTTCATTGTATGGCACAGG+TGG - chr1_3:55454571-55454590 Msa0126370:intron 40.0%
ATATCAACCCTCATTTCAGC+AGG + chr1_3:55454655-55454674 None:intergenic 40.0%
! ACCATAGCTGTCCATCATTT+TGG - chr1_3:55454735-55454754 Msa0126370:intron 40.0%
!! TCCAAAATGATGGACAGCTA+TGG + chr1_3:55454739-55454758 None:intergenic 40.0%
! GCTGTCCATCATTTTGGATT+TGG - chr1_3:55454741-55454760 Msa0126370:intron 40.0%
ACTACCTTGACTGCATCTAT+AGG + chr1_3:55455062-55455081 None:intergenic 40.0%
CTGTTATTGGTACAGGTATG+GGG + chr1_3:55455172-55455191 None:intergenic 40.0%
CACTGTTATTGGTACAGGTA+TGG + chr1_3:55455174-55455193 None:intergenic 40.0%
GTCAAACACAACAGAAACAC+AGG + chr1_3:55455218-55455237 None:intergenic 40.0%
CAGCAAACATGGAAATACAG+AGG + chr1_3:55455252-55455271 None:intergenic 40.0%
! TGTATTTCCATGTTTGCTGC+AGG - chr1_3:55455253-55455272 Msa0126370:intron 40.0%
GGTATGTGATAATCATCCTC+AGG - chr1_3:55455274-55455293 Msa0126370:intron 40.0%
TTAACCAAAACAACACCCTG+AGG + chr1_3:55455293-55455312 None:intergenic 40.0%
GCGTGCATAGAATTGATGAA+TGG - chr1_3:55455338-55455357 Msa0126370:CDS 40.0%
! GCTATGCTGCTTATATGACA+AGG + chr1_3:55455445-55455464 None:intergenic 40.0%
TATAAGCAGCATAGCCTACT+TGG - chr1_3:55455450-55455469 Msa0126370:CDS 40.0%
!!! GCATGCTGACTTTCTTTTGT+TGG - chr1_3:55455472-55455491 Msa0126370:CDS 40.0%
AAACCCTCGAAAAAGCTCAA+AGG + chr1_3:55455583-55455602 None:intergenic 40.0%
!!! TTTGAGCTTTTTCGAGGGTT+TGG - chr1_3:55455582-55455601 Msa0126370:intron 40.0%
ATCCCTATACTTTACCCACA+AGG + chr1_3:55455651-55455670 None:intergenic 40.0%
TAATTAACCATGCCACAGTC+CGG - chr1_3:55455879-55455898 Msa0126370:intron 40.0%
TCACAGTTCCTAATAAGTCC+AGG - chr1_3:55455988-55456007 Msa0126370:CDS 40.0%
TTTCAAGGCCTGGACTTATT+AGG + chr1_3:55455999-55456018 None:intergenic 40.0%
TCTTGCAATATTTCAAGGCC+TGG + chr1_3:55456009-55456028 None:intergenic 40.0%
GGGGTTCTTGCAATATTTCA+AGG + chr1_3:55456014-55456033 None:intergenic 40.0%
ACGTAGTAATCCATGAGCTT+CGG + chr1_3:55456035-55456054 None:intergenic 40.0%
CTGCAAAACTGCAAAAAGCA+AGG + chr1_3:55456064-55456083 None:intergenic 40.0%
AAAAAAGCTGCAACTTGCCA+TGG - chr1_3:55456379-55456398 Msa0126370:five_prime_UTR 40.0%
GAATGCTAATCTCACATCAC+AGG + chr1_3:55456433-55456452 None:intergenic 40.0%
TGGGTTTCTATTCGCTACAG+TGG + chr1_3:55449676-55449695 None:intergenic 45.0%
AGAAGTTAGCGTGTACCAGT+AGG + chr1_3:55449761-55449780 None:intergenic 45.0%
! GCTGCGGATTTGAGATGAAA+AGG + chr1_3:55449792-55449811 None:intergenic 45.0%
GGTGAAAATGTCGCAGATGT+TGG - chr1_3:55449842-55449861 Msa0126370:three_prime_UTR 45.0%
GATGTTGGATGGTACGTTCT+TGG - chr1_3:55449857-55449876 Msa0126370:three_prime_UTR 45.0%
TGGTCCTTATGTCTTCTCTG+AGG - chr1_3:55449898-55449917 Msa0126370:three_prime_UTR 45.0%
TGCACCTCAGAGAAGACATA+AGG + chr1_3:55449905-55449924 None:intergenic 45.0%
!! TATGTCTTCTCTGAGGTGCA+AGG - chr1_3:55449905-55449924 Msa0126370:three_prime_UTR 45.0%
GGTCTGAAGGAAGAACTGAA+TGG - chr1_3:55450048-55450067 Msa0126370:three_prime_UTR 45.0%
GAAGACGAATTGGGTCTTTG+AGG + chr1_3:55450116-55450135 None:intergenic 45.0%
CCTGCAGTTGAAGACGAATT+GGG + chr1_3:55450125-55450144 None:intergenic 45.0%
ACCTGCAGTTGAAGACGAAT+TGG + chr1_3:55450126-55450145 None:intergenic 45.0%
TTATGCTGAGGCTGAAGATG+TGG - chr1_3:55450524-55450543 Msa0126370:intron 45.0%
AAAGGAGATTAAGGAGGCTG+AGG - chr1_3:55450566-55450585 Msa0126370:intron 45.0%
CAAGTGGAAGCTTCGGAATT+CGG - chr1_3:55450591-55450610 Msa0126370:intron 45.0%
GAGTCTTAGGGCATATAAGC+GGG - chr1_3:55450713-55450732 Msa0126370:CDS 45.0%
! GGGACACTGAAGGTGTATTA+AGG - chr1_3:55451076-55451095 Msa0126370:intron 45.0%
!! GTTAGTTTGTTACGGAGGGA+GGG + chr1_3:55451143-55451162 None:intergenic 45.0%
!! AGTTAGTTTGTTACGGAGGG+AGG + chr1_3:55451144-55451163 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+GGG - chr1_3:55451492-55451511 Msa0126370:intron 45.0%
TTTGGATTGAGGGTTTAGGG+GGG - chr1_3:55451493-55451512 Msa0126370:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG + chr1_3:55451702-55451721 None:intergenic 45.0%
TGTGTTTGGATGGAGGGTTT+AGG + chr1_3:55451706-55451725 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATGGA+GGG + chr1_3:55451712-55451731 None:intergenic 45.0%
! TTAAGGGTGTGTTTGGATGG+AGG + chr1_3:55451713-55451732 None:intergenic 45.0%
TCCATCCAAACACACCCTTA+AGG - chr1_3:55451712-55451731 Msa0126370:intron 45.0%
! TCCTTAAGGGTGTGTTTGGA+TGG + chr1_3:55451716-55451735 None:intergenic 45.0%
GTCATCTCTTCAACCCCATA+AGG + chr1_3:55452009-55452028 None:intergenic 45.0%
AATACCAGTGTGGTAGCTGT+TGG - chr1_3:55452153-55452172 Msa0126370:intron 45.0%
ATACCAGTGTGGTAGCTGTT+GGG - chr1_3:55452154-55452173 Msa0126370:intron 45.0%
TAGCTTCCTGGAACAGAATG+AGG + chr1_3:55452341-55452360 None:intergenic 45.0%
! CAGGAGGTTTATTAGCTTCC+TGG + chr1_3:55452353-55452372 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+GGG + chr1_3:55453108-55453127 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr1_3:55453109-55453128 None:intergenic 45.0%
!! GGCTCTAGCAATCCAACTTT+TGG - chr1_3:55453499-55453518 Msa0126370:CDS 45.0%
! TTTTGGATGGTGCGCCTTTT+CGG - chr1_3:55453516-55453535 Msa0126370:CDS 45.0%
ATCTTATCACCAGGCCGAAA+AGG + chr1_3:55453533-55453552 None:intergenic 45.0%
GACATCGGAATCTTATCACC+AGG + chr1_3:55453542-55453561 None:intergenic 45.0%
ACTCAAGGATCAACGGACAT+GGG + chr1_3:55453988-55454007 None:intergenic 45.0%
AACTCAAGGATCAACGGACA+TGG + chr1_3:55453989-55454008 None:intergenic 45.0%
! TGAAGCAAGAAAGCATGCTG+TGG - chr1_3:55454421-55454440 Msa0126370:intron 45.0%
TAGCGAAGGACAACAGTTGT+TGG + chr1_3:55454622-55454641 None:intergenic 45.0%
CAGGACTGAACATATAGCGA+AGG + chr1_3:55454636-55454655 None:intergenic 45.0%
TGTTCAGTCCTGCTGAAATG+AGG - chr1_3:55454644-55454663 Msa0126370:intron 45.0%
GTTCAGTCCTGCTGAAATGA+GGG - chr1_3:55454645-55454664 Msa0126370:intron 45.0%
AAAGAGGAATGCACGAAGCT+TGG - chr1_3:55455035-55455054 Msa0126370:intron 45.0%
TGGACCTATAGATGCAGTCA+AGG - chr1_3:55455055-55455074 Msa0126370:intron 45.0%
TCACATACCTGCAGCAAACA+TGG + chr1_3:55455263-55455282 None:intergenic 45.0%
!!! TCATCCTCAGGGTGTTGTTT+TGG - chr1_3:55455286-55455305 Msa0126370:intron 45.0%
AGAAAGTCAGCATGCCAAGT+AGG + chr1_3:55455467-55455486 None:intergenic 45.0%
ATACATGCCAGTGAAGACGA+TGG - chr1_3:55455854-55455873 Msa0126370:intron 45.0%
AATTAACCATGCCACAGTCC+GGG - chr1_3:55455880-55455899 Msa0126370:intron 45.0%
TAGCATCTTCCTCTAGATCC+CGG + chr1_3:55455901-55455920 None:intergenic 45.0%
AGAGGAAGATGCTAAGCGAT+TGG - chr1_3:55455907-55455926 Msa0126370:intron 45.0%
! CAGTTTGGTGAGGAACTTGA+AGG - chr1_3:55455932-55455951 Msa0126370:CDS 45.0%
GTAGTAATCCATGAGCTTCG+GGG + chr1_3:55456033-55456052 None:intergenic 45.0%
CGTAGTAATCCATGAGCTTC+GGG + chr1_3:55456034-55456053 None:intergenic 45.0%
CCAATGGCGTTAATGTTCCA+TGG + chr1_3:55456399-55456418 None:intergenic 45.0%
CCATGGAACATTAACGCCAT+TGG - chr1_3:55456396-55456415 Msa0126370:five_prime_UTR 45.0%
ACAGGGTCAATCAACACCAA+TGG + chr1_3:55456415-55456434 None:intergenic 45.0%
!!! TTTTTTTAATTTTTTATGAA+TGG - chr1_3:55452812-55452831 Msa0126370:intron 5.0%
! GTCGTCGTCTCTAGAAACCA+CGG - chr1_3:55449616-55449635 Msa0126370:three_prime_UTR 50.0%
! TCGTCGTCTCTAGAAACCAC+GGG - chr1_3:55449617-55449636 Msa0126370:three_prime_UTR 50.0%
!! ATGCAATGAAAGAGTGCCCG+TGG + chr1_3:55449636-55449655 None:intergenic 50.0%
TATTCGCTACAGTGGCAGCA+AGG + chr1_3:55449668-55449687 None:intergenic 50.0%
CAGTAGGTTGCGGTTGATTG+TGG + chr1_3:55449745-55449764 None:intergenic 50.0%
CACAATCAACCGCAACCTAC+TGG - chr1_3:55449743-55449762 Msa0126370:three_prime_UTR 50.0%
TAGCGTGTACCAGTAGGTTG+CGG + chr1_3:55449755-55449774 None:intergenic 50.0%
CCCAATTCGTCTTCAACTGC+AGG - chr1_3:55450122-55450141 Msa0126370:CDS 50.0%
! TATAAGCGGGTTCCTCAGGT+TGG - chr1_3:55450726-55450745 Msa0126370:CDS 50.0%
AAAGCTCGTGTACCAACCTG+AGG + chr1_3:55450741-55450760 None:intergenic 50.0%
! GATGCCTAGGATTTGGGGTT+AGG - chr1_3:55450854-55450873 Msa0126370:intron 50.0%
GCTTATGTGGTTCATAGGGC+TGG - chr1_3:55450922-55450941 Msa0126370:intron 50.0%
AGGTCACATAGGATCCCTGA+AGG - chr1_3:55451032-55451051 Msa0126370:CDS 50.0%
AAGGTGTAGCCCAGTGGTAT+GGG - chr1_3:55451051-55451070 Msa0126370:intron 50.0%
TAGGGGTCGAACACTAGAGT+CGG + chr1_3:55451107-55451126 None:intergenic 50.0%
TTGGATTGAGGGTTTAGGGG+GGG - chr1_3:55451494-55451513 Msa0126370:intron 50.0%
TTGGATGGAGGGTTTAGGAG+GGG + chr1_3:55451701-55451720 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG + chr1_3:55451703-55451722 None:intergenic 50.0%
! TCTGGTAGCGCTTTGCCTTA+TGG - chr1_3:55451991-55452010 Msa0126370:intron 50.0%
! CTGGTAGCGCTTTGCCTTAT+GGG - chr1_3:55451992-55452011 Msa0126370:intron 50.0%
! TGGTAGCGCTTTGCCTTATG+GGG - chr1_3:55451993-55452012 Msa0126370:intron 50.0%
! GCGGACACCTTCTTTTCTTC+AGG + chr1_3:55452201-55452220 None:intergenic 50.0%
TTATGTCACTGGGTTGCCTG+AGG - chr1_3:55452407-55452426 Msa0126370:intron 50.0%
ATGTGCCCAGAAAAGGGAAG+GGG + chr1_3:55452867-55452886 None:intergenic 50.0%
CATGTGCCCAGAAAAGGGAA+GGG + chr1_3:55452868-55452887 None:intergenic 50.0%
ACATGTGCCCAGAAAAGGGA+AGG + chr1_3:55452869-55452888 None:intergenic 50.0%
GAGCACATGTGCCCAGAAAA+GGG + chr1_3:55452873-55452892 None:intergenic 50.0%
TGAGCACATGTGCCCAGAAA+AGG + chr1_3:55452874-55452893 None:intergenic 50.0%
! AAAATGGTGGGACCCCTTAC+CGG + chr1_3:55453024-55453043 None:intergenic 50.0%
! GTAAGGGGTCCCACCATTTT+TGG - chr1_3:55453024-55453043 Msa0126370:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1_3:55453131-55453150 Msa0126370:intron 50.0%
GCAAGACAGAAGGGTAACCT+TGG + chr1_3:55453151-55453170 None:intergenic 50.0%
!!! ACACGGGGCTTTTTGGTTTC+TGG + chr1_3:55453324-55453343 None:intergenic 50.0%
! GAGCTTAACACGGGGCTTTT+TGG + chr1_3:55453331-55453350 None:intergenic 50.0%
TGGATTGCTAGAGCCACTGA+TGG + chr1_3:55453494-55453513 None:intergenic 50.0%
AAGGCGCACCATCCAAAAGT+TGG + chr1_3:55453514-55453533 None:intergenic 50.0%
TTAGCCAGGGAGACAGACAT+CGG + chr1_3:55453557-55453576 None:intergenic 50.0%
ATGCTTGGATGGGGTATGCT+TGG - chr1_3:55453807-55453826 Msa0126370:intron 50.0%
TCACATGTGTAGCGATGCAC+TGG + chr1_3:55454716-55454735 None:intergenic 50.0%
!! CAAGGACAGAAAAGGTGCTC+AGG - chr1_3:55455316-55455335 Msa0126370:intron 50.0%
GCTAAGCGATTGGAGCAGTT+TGG - chr1_3:55455917-55455936 Msa0126370:intron 50.0%
CACTGTCAGCATATCGCACG+AGG - chr1_3:55450194-55450213 Msa0126370:CDS 55.0%
!! CACTTGCTGTCCTAGCTCAG+TGG + chr1_3:55450298-55450317 None:intergenic 55.0%
TGAGGCGCAAGTGGAAGCTT+CGG - chr1_3:55450584-55450603 Msa0126370:intron 55.0%
GTGGAAGCTTCGGAATTCGG+TGG - chr1_3:55450594-55450613 Msa0126370:intron 55.0%
! GAAGCTTCGGAATTCGGTGG+TGG - chr1_3:55450597-55450616 Msa0126370:intron 55.0%
!! TTCGGTGGTGGTGGTGTAGT+AGG - chr1_3:55450609-55450628 Msa0126370:intron 55.0%
AGACCTTCAACACCGCCTGA+TGG - chr1_3:55450645-55450664 Msa0126370:intron 55.0%
! TCACCATCAGGCGGTGTTGA+AGG + chr1_3:55450651-55450670 None:intergenic 55.0%
! GGCATATAAGCGGGTTCCTC+AGG - chr1_3:55450722-55450741 Msa0126370:CDS 55.0%
ACCACTGGGCTACACCTTCA+GGG + chr1_3:55451049-55451068 None:intergenic 55.0%
TACCACTGGGCTACACCTTC+AGG + chr1_3:55451050-55451069 None:intergenic 55.0%
! GAAGGTGTAGCCCAGTGGTA+TGG - chr1_3:55451050-55451069 Msa0126370:intron 55.0%
TGTAGCCCAGTGGTATGGGT+TGG - chr1_3:55451055-55451074 Msa0126370:intron 55.0%
GTAGCCCAGTGGTATGGGTT+GGG - chr1_3:55451056-55451075 Msa0126370:intron 55.0%
GTGTCCCAACCCATACCACT+GGG + chr1_3:55451063-55451082 None:intergenic 55.0%
AGTGTCCCAACCCATACCAC+TGG + chr1_3:55451064-55451083 None:intergenic 55.0%
!! GGTATGGGTTGGGACACTGA+AGG - chr1_3:55451066-55451085 Msa0126370:intron 55.0%
AGGGGTCGAACACTAGAGTC+GGG + chr1_3:55451106-55451125 None:intergenic 55.0%
ATTGAGGGTTTAGGGGGGGA+AGG - chr1_3:55451498-55451517 Msa0126370:intron 55.0%
TTGAGGGTTTAGGGGGGGAA+GGG - chr1_3:55451499-55451518 Msa0126370:intron 55.0%
TGGAGGGTTTAGGAGGGGAA+GGG + chr1_3:55451696-55451715 None:intergenic 55.0%
ATGGAGGGTTTAGGAGGGGA+AGG + chr1_3:55451697-55451716 None:intergenic 55.0%
CTTCCCAACAGCTACCACAC+TGG + chr1_3:55452160-55452179 None:intergenic 55.0%
GTGTGGTAGCTGTTGGGAAG+AGG - chr1_3:55452160-55452179 Msa0126370:intron 55.0%
! GAGAGCCCCTTCCCTTTTCT+GGG - chr1_3:55452859-55452878 Msa0126370:intron 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr1_3:55452996-55453015 Msa0126370:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr1_3:55452997-55453016 Msa0126370:intron 55.0%
AAGGGTAACCTTGGCGCAAC+TGG + chr1_3:55453142-55453161 None:intergenic 55.0%
GATTCCGATGTCTGTCTCCC+TGG - chr1_3:55453550-55453569 Msa0126370:intron 55.0%
TTCCTCTAGATCCCGGACTG+TGG + chr1_3:55455894-55455913 None:intergenic 55.0%
! GCGATTGGAGCAGTTTGGTG+AGG - chr1_3:55455922-55455941 Msa0126370:CDS 55.0%
TGCAAGAACCCCGAAGCTCA+TGG - chr1_3:55456022-55456041 Msa0126370:CDS 55.0%
TAAGGAGGCTGAGGCGCAAG+TGG - chr1_3:55450575-55450594 Msa0126370:intron 60.0%
! GCTTCGGAATTCGGTGGTGG+TGG - chr1_3:55450600-55450619 Msa0126370:intron 60.0%
! TCCCTGAAGGTGTAGCCCAG+TGG - chr1_3:55451045-55451064 Msa0126370:CDS 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr1_3:55451691-55451710 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr1_3:55451692-55451711 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr1_3:55451693-55451712 None:intergenic 60.0%
TGATAGGAGGAGGCCACGTC+TGG - chr1_3:55451973-55451992 Msa0126370:intron 60.0%
! AGGCAAAGCGCTACCAGACG+TGG + chr1_3:55451989-55452008 None:intergenic 60.0%
! GGAGAGCCCCTTCCCTTTTC+TGG - chr1_3:55452858-55452877 Msa0126370:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+AGG + chr1_3:55452991-55453010 None:intergenic 60.0%
TTACCGGACCCTGCGTATGC+GGG + chr1_3:55453008-55453027 None:intergenic 60.0%
CTTACCGGACCCTGCGTATG+CGG + chr1_3:55453009-55453028 None:intergenic 60.0%
GCATACGCAGGGTCCGGTAA+GGG - chr1_3:55453008-55453027 Msa0126370:intron 60.0%
CATACGCAGGGTCCGGTAAG+GGG - chr1_3:55453009-55453028 Msa0126370:intron 60.0%
TCACTCCTGCTGGTGCCTGA+TGG - chr1_3:55453690-55453709 Msa0126370:intron 60.0%
AAGCTCCATCAGGCACCAGC+AGG + chr1_3:55453698-55453717 None:intergenic 60.0%
CTAGATCCCGGACTGTGGCA+TGG + chr1_3:55455889-55455908 None:intergenic 60.0%
TGCCACAGTCCGGGATCTAG+AGG - chr1_3:55455889-55455908 Msa0126370:intron 60.0%
AGGGTTTAGGGGGGGAAGGG+AGG - chr1_3:55451502-55451521 Msa0126370:intron 65.0%
GGGTTTAGGGGGGGAAGGGA+GGG - chr1_3:55451503-55451522 Msa0126370:intron 65.0%
GGTTTAGGGGGGGAAGGGAG+GGG - chr1_3:55451504-55451523 Msa0126370:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr1_3:55451687-55451706 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr1_3:55451688-55451707 None:intergenic 65.0%
CGCATACGCAGGGTCCGGTA+AGG - chr1_3:55453007-55453026 Msa0126370:intron 65.0%
! GATGGTGCGCCTTTTCGGCC+TGG - chr1_3:55453521-55453540 Msa0126370:intron 65.0%
CCTCTCGCCCGTGCGTGGAT+CGG + chr1_3:55449593-55449612 None:intergenic 70.0%
ACGTTCCTCTCGCCCGTGCG+TGG + chr1_3:55449598-55449617 None:intergenic 70.0%
TAGGGGGGGAAGGGAGGGGA+TGG - chr1_3:55451508-55451527 Msa0126370:intron 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr1_3:55453002-55453021 Msa0126370:intron 70.0%
CCGATCCACGCACGGGCGAG+AGG - chr1_3:55449590-55449609 Msa0126370:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55449589 55456472 55449589 ID=Msa0126370;Name=Msa0126370
chr1_3 mRNA 55449589 55456472 55449589 ID=Msa0126370-mRNA-1;Parent=Msa0126370;Name=Msa0126370-mRNA-1;_AED=0.13;_eAED=0.13;_QI=127|1|1|1|1|1|14|511|503
chr1_3 exon 55449589 55450223 55449589 ID=Msa0126370-mRNA-1:exon:17267;Parent=Msa0126370-mRNA-1
chr1_3 exon 55450695 55450786 55450695 ID=Msa0126370-mRNA-1:exon:17266;Parent=Msa0126370-mRNA-1
chr1_3 exon 55450985 55451065 55450985 ID=Msa0126370-mRNA-1:exon:17265;Parent=Msa0126370-mRNA-1
chr1_3 exon 55451395 55451471 55451395 ID=Msa0126370-mRNA-1:exon:17264;Parent=Msa0126370-mRNA-1
chr1_3 exon 55452242 55452328 55452242 ID=Msa0126370-mRNA-1:exon:17263;Parent=Msa0126370-mRNA-1
chr1_3 exon 55452471 55452573 55452471 ID=Msa0126370-mRNA-1:exon:17262;Parent=Msa0126370-mRNA-1
chr1_3 exon 55452654 55452743 55452654 ID=Msa0126370-mRNA-1:exon:17261;Parent=Msa0126370-mRNA-1
chr1_3 exon 55453499 55453537 55453499 ID=Msa0126370-mRNA-1:exon:17260;Parent=Msa0126370-mRNA-1
chr1_3 exon 55453615 55453707 55453615 ID=Msa0126370-mRNA-1:exon:17259;Parent=Msa0126370-mRNA-1
chr1_3 exon 55453849 55454082 55453849 ID=Msa0126370-mRNA-1:exon:17258;Parent=Msa0126370-mRNA-1
chr1_3 exon 55455318 55455538 55455318 ID=Msa0126370-mRNA-1:exon:17257;Parent=Msa0126370-mRNA-1
chr1_3 exon 55455918 55456055 55455918 ID=Msa0126370-mRNA-1:exon:17256;Parent=Msa0126370-mRNA-1
chr1_3 exon 55456135 55456218 55456135 ID=Msa0126370-mRNA-1:exon:17255;Parent=Msa0126370-mRNA-1
chr1_3 exon 55456297 55456472 55456297 ID=Msa0126370-mRNA-1:exon:17254;Parent=Msa0126370-mRNA-1
chr1_3 five_prime_UTR 55456346 55456472 55456346 ID=Msa0126370-mRNA-1:five_prime_utr;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55456297 55456345 55456297 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55456135 55456218 55456135 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55455918 55456055 55455918 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55455318 55455538 55455318 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55453849 55454082 55453849 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55453615 55453707 55453615 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55453499 55453537 55453499 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55452654 55452743 55452654 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55452471 55452573 55452471 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55452242 55452328 55452242 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55451395 55451471 55451395 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55450985 55451065 55450985 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55450695 55450786 55450695 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 CDS 55450100 55450223 55450100 ID=Msa0126370-mRNA-1:cds;Parent=Msa0126370-mRNA-1
chr1_3 three_prime_UTR 55449589 55450099 55449589 ID=Msa0126370-mRNA-1:three_prime_utr;Parent=Msa0126370-mRNA-1
Gene Sequence

>Msa0126370

ATGAATTCTGAAAATGGCTACGAAAGCCACAATCAACCGCAACCTACTGGTGAAAATGTCGCAGATGTTGGATGGTACGTTCTTGGAGAGAATCAACAACAACTTGGTCCTTATGTCTTCTCTGAGGTGCAAGAGCATTTCTTAAATGGATACCTATCAGAAAATACACTTTTATGGTCTGAAGGAAGAACTGAATGGCAGCCTTTGTCTTCAATTTCTGAATTATGGGATCAAATTAACCCTCAAAGACCCAATTCGTCTTCAACTGCAGTTTATGCTGAGGCTGAAGATGTGGACGAGTTTGAAAAATGGCAAAAGGAGATTAAGGAGGCTGAGGCGCAAGTGGAAGCTTCGGAATTCGGTGGTGGTGGTGTAGTAGGAGAAGACGTTGAGAGACCTTCAACACCGCCTGATGGTGAAGAAGAATTTACTGATGATGATGGGACATATAAGTGGGATAAGAGTCTTAGGGCATATAAGCGGGTTCCTCAGGAGGAGGCCACGTCTGGTAGCGCTTTGCCTTATGGGGTTGAAGAGATGACCTTTTTGAAAGAAGAGGAAGTTTTTCCGATAGTAACTGATTCTGATGCCTCAAAAATTGTTGAAGATAGTTCAAAATCGAGTGTTTCTGCAACTTCCATAAAGGAAGAAACAACTGAAGCAAAAAATACCAGTGTGGTAGCTGTTGGGAAGAGGAAGCATTCAGATAAACCTGAAGAAAAGAAGGAAGCTAATAAACCTCCTGACAGTTGGTTTGAATTAAAGGTCAATACACATGTTTATGTCACTGGGTTGCCTGAGGATGTTACTATTGATGAAGTTGTGGAAACATTTTCCAAGTATGGAATTATAAAAGAGGATCCAGAAACCAAAAAGCCCCGTGTTAAGCTCTATGTTGATAAAGAGACAGGAAGAAAAAAGGGAGATGCATTGGTTACATATCTCAAGGAACCATCAGTGGCTCTAGCAATCCAACTTTTGGATGGTGCGCCTTTTCGGCCTGGTGATAAGATTCCGATGTCTGTCTCCCTGGCTAAATTTCAGCAGAAAGGAGAGAAGTTTGTATCCAAGCAAGCTGACAAAGACAATAGACGGAAAAAGAAAACGAAAAAGTTGGAAGACAAAATGCTTGGATGGGGTGGTCGTGATGATTCAAAAGTTTTAATTCCAACAACTGTTGTCCTTCGCTATATGTTCAGTCCTGCTGAAATGAGGGCTGATGAAAATTTGCACTCAGAACTAGAAGAAGATGTTAAAGAGGAATGCACGAAGCTTGGACCTATAGATGCAGTCAAGGTATGTGATAATCATCCTCAGGGTGTTGTTTTGGTTAAATTCAAGGACAGAAAAGGTGCTCAGGCGTGCATAGAATTGATGAATGGAAGATGGTTTGGTGGTAGACAGATACATGCCAGTGAAGACGATGGTTTAATTAACCATGCCACAGTCCGGGATCTAGAGGAAGATGCTAAGCGATTGGAGCAGTTTGGTGAGGAACTTGAAGGTGAATGA

Protein sequence

>Msa0126370

MNSENGYESHNQPQPTGENVADVGWYVLGENQQQLGPYVFSEVQEHFLNGYLSENTLLWSEGRTEWQPLSSISELWDQINPQRPNSSSTAVYAEAEDVDEFEKWQKEIKEAEAQVEASEFGGGGVVGEDVERPSTPPDGEEEFTDDDGTYKWDKSLRAYKRVPQEEATSGSALPYGVEEMTFLKEEEVFPIVTDSDASKIVEDSSKSSVSATSIKEETTEAKNTSVVAVGKRKHSDKPEEKKEANKPPDSWFELKVNTHVYVTGLPEDVTIDEVVETFSKYGIIKEDPETKKPRVKLYVDKETGRKKGDALVTYLKEPSVALAIQLLDGAPFRPGDKIPMSVSLAKFQQKGEKFVSKQADKDNRRKKKTKKLEDKMLGWGGRDDSKVLIPTTVVLRYMFSPAEMRADENLHSELEEDVKEECTKLGPIDAVKVCDNHPQGVVLVKFKDRKGAQACIELMNGRWFGGRQIHASEDDGLINHATVRDLEEDAKRLEQFGEELEGE*