Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831280 | RHN64035.1 | 65.909 | 176 | 46 | 4 | 165 | 332 | 29 | 198 | 4.10e-68 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831280 | sp|Q9SJA2|CSLC8_ARATH | 41.912 | 272 | 114 | 12 | 95 | 331 | 64 | 326 | 1.33e-36 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831280 | A0A396IJQ2 | 65.909 | 176 | 46 | 4 | 165 | 332 | 29 | 198 | 1.96e-68 | 222 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103480 | Msa0831280 | 0.809569 | 1.773380e-50 | -8.615850e-47 |
| Msa0755050 | Msa0831280 | 0.812311 | 4.519942e-51 | -8.615850e-47 |
| Msa0831280 | Msa1052330 | 0.810386 | 1.182706e-50 | -8.615850e-47 |
| Msa0831280 | Msa1394310 | 0.807130 | 5.874106e-50 | -8.615850e-47 |
| Msa0338330 | Msa0831280 | 0.982694 | 9.331782e-156 | -8.615850e-47 |
| Msa0340710 | Msa0831280 | 0.809615 | 1.733183e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831280 | MtrunA17_Chr4g0064791 | 65.909 | 176 | 46 | 4 | 165 | 332 | 29 | 198 | 3.77e-72 | 222 |
| Msa0831280 | MtrunA17_Chr3g0139081 | 47.742 | 310 | 88 | 12 | 85 | 331 | 23 | 321 | 2.31e-58 | 199 |
| Msa0831280 | MtrunA17_Chr3g0139081 | 51.020 | 98 | 11 | 4 | 4 | 67 | 23 | 117 | 7.31e-12 | 66.2 |
| Msa0831280 | MtrunA17_Chr4g0000581 | 39.689 | 257 | 108 | 10 | 111 | 331 | 91 | 336 | 1.19e-35 | 136 |
| Msa0831280 | MtrunA17_Chr6g0451381 | 57.143 | 105 | 37 | 2 | 231 | 331 | 202 | 302 | 6.37e-31 | 123 |
| Msa0831280 | MtrunA17_Chr8g0339101 | 55.046 | 109 | 41 | 2 | 227 | 331 | 235 | 339 | 2.09e-28 | 115 |
| Msa0831280 | MtrunA17_Chr3g0135191 | 51.429 | 105 | 43 | 2 | 231 | 331 | 236 | 336 | 7.54e-26 | 108 |
| Msa0831280 | MtrunA17_Chr4g0060331 | 73.016 | 63 | 13 | 2 | 94 | 153 | 28 | 89 | 1.08e-17 | 77.4 |
| Msa0831280 | MtrunA17_Chr4g0060331 | 61.290 | 62 | 18 | 3 | 13 | 71 | 28 | 86 | 1.44e-11 | 60.5 |
| Msa0831280 | MtrunA17_Chr4g0037831 | 74.194 | 62 | 12 | 2 | 95 | 153 | 29 | 89 | 2.64e-17 | 77.0 |
| Msa0831280 | MtrunA17_Chr4g0037831 | 62.295 | 61 | 17 | 3 | 14 | 71 | 29 | 86 | 5.32e-11 | 59.3 |
| Msa0831280 | MtrunA17_Chr1g0179441 | 40.000 | 105 | 55 | 2 | 231 | 331 | 86 | 186 | 1.06e-15 | 77.8 |
| Msa0831280 | MtrunA17_Chr1g0179421 | 41.121 | 107 | 51 | 3 | 231 | 331 | 86 | 186 | 1.23e-15 | 77.8 |
| Msa0831280 | MtrunA17_Chr7g0265711 | 41.905 | 105 | 53 | 2 | 231 | 331 | 95 | 195 | 3.01e-15 | 76.6 |
| Msa0831280 | MtrunA17_Chr1g0198111 | 38.211 | 123 | 64 | 3 | 217 | 331 | 75 | 193 | 4.22e-15 | 75.9 |
| Msa0831280 | MtrunA17_Chr7g0264621 | 40.000 | 105 | 55 | 2 | 231 | 331 | 91 | 191 | 4.29e-15 | 75.9 |
| Msa0831280 | MtrunA17_Chr1g0179381 | 40.187 | 107 | 52 | 3 | 231 | 331 | 86 | 186 | 5.10e-15 | 75.9 |
| Msa0831280 | MtrunA17_Chr4g0027221 | 37.143 | 105 | 58 | 2 | 231 | 331 | 95 | 195 | 2.14e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831280 | AT2G24630.1 | 41.912 | 272 | 114 | 12 | 95 | 331 | 64 | 326 | 1.35e-37 | 142 |
| Msa0831280 | AT2G24630.2 | 41.912 | 272 | 114 | 12 | 95 | 331 | 64 | 326 | 1.35e-37 | 142 |
| Msa0831280 | AT4G31590.1 | 62.857 | 105 | 31 | 2 | 231 | 331 | 226 | 326 | 2.29e-34 | 133 |
| Msa0831280 | AT3G28180.1 | 35.849 | 265 | 127 | 9 | 95 | 331 | 49 | 298 | 8.74e-29 | 117 |
| Msa0831280 | AT3G07330.1 | 51.429 | 105 | 43 | 2 | 231 | 331 | 220 | 320 | 2.79e-27 | 112 |
| Msa0831280 | AT3G07330.2 | 51.429 | 105 | 43 | 2 | 231 | 331 | 220 | 320 | 2.79e-27 | 112 |
| Msa0831280 | AT4G07960.1 | 50.962 | 104 | 43 | 2 | 232 | 331 | 241 | 340 | 1.14e-24 | 105 |
| Msa0831280 | AT4G07960.2 | 50.962 | 104 | 43 | 2 | 232 | 331 | 241 | 340 | 1.14e-24 | 105 |
| Msa0831280 | AT5G03760.1 | 43.925 | 107 | 48 | 3 | 231 | 331 | 96 | 196 | 3.82e-16 | 79.7 |
| Msa0831280 | AT2G35650.4 | 42.056 | 107 | 50 | 3 | 231 | 331 | 46 | 146 | 2.03e-15 | 77.4 |
| Msa0831280 | AT2G35650.2 | 42.056 | 107 | 50 | 3 | 231 | 331 | 46 | 146 | 2.03e-15 | 77.4 |
| Msa0831280 | AT2G35650.1 | 42.056 | 107 | 50 | 3 | 231 | 331 | 118 | 218 | 2.12e-15 | 77.4 |
| Msa0831280 | AT4G13410.2 | 40.000 | 105 | 55 | 2 | 231 | 331 | 110 | 210 | 3.93e-15 | 76.3 |
| Msa0831280 | AT4G13410.1 | 40.000 | 105 | 55 | 2 | 231 | 331 | 110 | 210 | 6.87e-15 | 75.9 |
| Msa0831280 | AT1G24070.2 | 40.952 | 105 | 54 | 2 | 231 | 331 | 121 | 221 | 8.39e-15 | 75.1 |
| Msa0831280 | AT1G24070.1 | 40.952 | 105 | 54 | 2 | 231 | 331 | 121 | 221 | 1.44e-14 | 74.7 |
| Msa0831280 | AT1G23480.3 | 40.952 | 105 | 54 | 3 | 231 | 331 | 47 | 147 | 4.02e-14 | 73.6 |
| Msa0831280 | AT1G23480.1 | 40.952 | 105 | 54 | 3 | 231 | 331 | 119 | 219 | 4.39e-14 | 73.6 |
| Msa0831280 | AT1G23480.2 | 40.952 | 105 | 54 | 3 | 231 | 331 | 119 | 219 | 4.39e-14 | 73.6 |
| Msa0831280 | AT5G16190.1 | 38.095 | 105 | 57 | 2 | 231 | 331 | 12 | 112 | 1.77e-13 | 71.2 |
| Msa0831280 | AT5G16190.2 | 38.095 | 105 | 57 | 2 | 231 | 331 | 73 | 173 | 2.07e-13 | 71.2 |
| Msa0831280 | AT5G16190.3 | 38.095 | 105 | 57 | 2 | 231 | 331 | 73 | 173 | 2.38e-13 | 71.2 |
| Msa0831280 | AT5G16190.4 | 38.095 | 105 | 57 | 2 | 231 | 331 | 73 | 173 | 3.16e-13 | 70.9 |
| Msa0831280 | AT5G22740.1 | 36.190 | 105 | 59 | 2 | 231 | 331 | 96 | 196 | 3.88e-13 | 70.5 |
Find 81 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTCTTGCTATTGAAAAT+TGG | 0.132464 | 5_4:-4302164 | Msa0831280:CDS |
| AGAGCATACAATGGTTAATT+AGG | 0.180568 | 5_4:-4300622 | Msa0831280:CDS |
| CACACTGAGTTTATCATATA+AGG | 0.204376 | 5_4:-4300466 | Msa0831280:exon |
| GGTGATTTCTTTGATTGTTT+TGG | 0.224748 | 5_4:-4301567 | Msa0831280:CDS |
| TATAATAAGTGATCAGATTA+TGG | 0.225234 | 5_4:+4300437 | None:intergenic |
| TATTGTGCTTACTTGGTTCT+AGG | 0.228935 | 5_4:-4300406 | Msa0831280:three_prime_UTR |
| GGCTCATCGCACCGTTTGTT+GGG | 0.229582 | 5_4:-4301705 | Msa0831280:CDS |
| GGCTCATCGCACCGTTTGTT+GGG | 0.229582 | 5_4:-4302313 | Msa0831280:CDS |
| GCACATTGCTCCACCCATTT+AGG | 0.250648 | 5_4:-4301422 | Msa0831280:CDS |
| GGGGTTGGTAACTGTTCTTC+TGG | 0.257172 | 5_4:-4301684 | Msa0831280:CDS |
| GGGGTTGGTAACTGTTCTTC+TGG | 0.257172 | 5_4:-4302292 | Msa0831280:CDS |
| CCATTTAGGCTCTTTCAAAA+TGG | 0.277923 | 5_4:-4301408 | Msa0831280:CDS |
| GACCGTATGCTTCTTTGTTT+GGG | 0.295829 | 5_4:-4301337 | Msa0831280:CDS |
| ATCTCTTGCTATTGAAAATT+GGG | 0.296987 | 5_4:-4302163 | Msa0831280:CDS |
| AGTTTAAGCCAAGGATTAAC+AGG | 0.300150 | 5_4:-4301291 | Msa0831280:CDS |
| ATTCATTTATCCAATGGTTT+TGG | 0.302694 | 5_4:-4301229 | Msa0831280:CDS |
| TGGTTCTAGGATGTATGATT+TGG | 0.317458 | 5_4:-4300393 | Msa0831280:three_prime_UTR |
| GGACCGTATGCTTCTTTGTT+TGG | 0.318486 | 5_4:-4301338 | Msa0831280:CDS |
| GAAGCATACGGTCCACAAAT+TGG | 0.320331 | 5_4:+4301347 | None:intergenic |
| TTCTTTGTTTGGGGTGCTCT+TGG | 0.337102 | 5_4:-4301327 | Msa0831280:CDS |
| AGGCTCATCGCACCGTTTGT+TGG | 0.338549 | 5_4:-4301706 | Msa0831280:CDS |
| AGGCTCATCGCACCGTTTGT+TGG | 0.338549 | 5_4:-4302314 | Msa0831280:CDS |
| TTATAGCTTAATCGTTGTAT+TGG | 0.347158 | 5_4:-4300344 | Msa0831280:three_prime_UTR |
| TATAGCTTAATCGTTGTATT+GGG | 0.355816 | 5_4:-4300343 | Msa0831280:three_prime_UTR |
| CATAATCTATCGGCATTGTT+TGG | 0.369705 | 5_4:-4300564 | Msa0831280:CDS |
| TGGTAACTGTTCTTCTGGAT+TGG | 0.382742 | 5_4:-4301679 | Msa0831280:CDS |
| TGGTAACTGTTCTTCTGGAT+TGG | 0.382742 | 5_4:-4302287 | Msa0831280:CDS |
| TTTCAAATATTGTGCTTACT+TGG | 0.387549 | 5_4:-4300413 | Msa0831280:three_prime_UTR |
| TTTGTTTCTTATCCAATTTG+TGG | 0.388770 | 5_4:-4301359 | Msa0831280:CDS |
| GGTTCTAGGATGTATGATTT+GGG | 0.397116 | 5_4:-4300392 | Msa0831280:three_prime_UTR |
| ATCTTCACAACTGAGAAATC+AGG | 0.398750 | 5_4:+4301813 | None:intergenic |
| ATCTTCACAACTGAGAAATC+AGG | 0.398750 | 5_4:+4302421 | None:intergenic |
| AATGGATCCCTGTTAATCCT+TGG | 0.419579 | 5_4:+4301283 | None:intergenic |
| ACTGTTCTTCTGGATTGGCT+TGG | 0.424815 | 5_4:-4301674 | Msa0831280:CDS |
| ACTGTTCTTCTGGATTGGCT+TGG | 0.424815 | 5_4:-4302282 | Msa0831280:CDS |
| TTGAAAATTGGGATTGGAGT+TGG | 0.434809 | 5_4:-4302152 | Msa0831280:CDS |
| TCAAAATGGCTTATGTTGCT+TGG | 0.435336 | 5_4:-4301394 | Msa0831280:CDS |
| TTGCTATTGAAAATTGGGAT+TGG | 0.435806 | 5_4:-4302158 | Msa0831280:CDS |
| CATTGTATGCTCTCATCATC+AGG | 0.437248 | 5_4:+4300632 | None:intergenic |
| GTCTCTAAGTGGAACCTAAC+GGG | 0.443813 | 5_4:-4300593 | Msa0831280:CDS |
| ACCAAGCAACAAAAGCCATT+TGG | 0.447549 | 5_4:+4301456 | None:intergenic |
| TTACTGATTCGAGTACTTGA+CGG | 0.453690 | 5_4:-4300656 | Msa0831280:CDS |
| GAGCATACAATGGTTAATTA+GGG | 0.454001 | 5_4:-4300621 | Msa0831280:CDS |
| CGGCATTGTTTGGTCAGCAC+TGG | 0.456663 | 5_4:-4300554 | Msa0831280:CDS |
| ATCTATATTCATTTATCCAA+TGG | 0.460958 | 5_4:-4301235 | Msa0831280:CDS |
| AATACATAGTCACAGCTCAT+TGG | 0.463395 | 5_4:+4300506 | None:intergenic |
| TCCAATGTGCAATGAGAAGC+AGG | 0.467513 | 5_4:-4301199 | Msa0831280:intron |
| TTTCTGAAGGTTGTTCCAAA+TGG | 0.467998 | 5_4:-4301471 | Msa0831280:intron |
| GGAATTTGAACCAAAACCAT+TGG | 0.468674 | 5_4:+4301219 | None:intergenic |
| TCAACATCATCAACCTTGAA+TGG | 0.468739 | 5_4:+4301265 | None:intergenic |
| AGATTATGTTGACTCCCGTT+AGG | 0.480708 | 5_4:+4300579 | None:intergenic |
| AAATTATCTCTGCATTTCAA+TGG | 0.485431 | 5_4:+4300308 | None:intergenic |
| GATTAACAGGGATCCATTCA+AGG | 0.490147 | 5_4:-4301278 | Msa0831280:CDS |
| GCTCATCGCACCGTTTGTTG+GGG | 0.507752 | 5_4:-4301704 | Msa0831280:CDS |
| GCTCATCGCACCGTTTGTTG+GGG | 0.507752 | 5_4:-4302312 | Msa0831280:CDS |
| TTCAAGGTTGATGATGTTGA+AGG | 0.517442 | 5_4:-4301262 | Msa0831280:CDS |
| TAGGATGTATGATTTGGGTA+AGG | 0.525846 | 5_4:-4300387 | Msa0831280:three_prime_UTR |
| AATTCAAGAAGTTTAAGCCA+AGG | 0.560075 | 5_4:-4301300 | Msa0831280:CDS |
| CTCATCGCACCGTTTGTTGG+GGG | 0.560545 | 5_4:-4301703 | Msa0831280:CDS |
| CTCATCGCACCGTTTGTTGG+GGG | 0.560545 | 5_4:-4302311 | Msa0831280:CDS |
| ACCTGCTTCTCATTGCACAT+TGG | 0.565767 | 5_4:+4301198 | None:intergenic |
| CGAATCAGTAAAAGATCACA+TGG | 0.575054 | 5_4:+4300668 | None:intergenic |
| CGGGAGTCAACATAATCTAT+CGG | 0.577360 | 5_4:-4300574 | Msa0831280:CDS |
| TCTTCACAACTGAGAAATCA+GGG | 0.577459 | 5_4:+4301814 | None:intergenic |
| TCTTCACAACTGAGAAATCA+GGG | 0.577459 | 5_4:+4302422 | None:intergenic |
| GGTCTCTAAGTGGAACCTAA+CGG | 0.582685 | 5_4:-4300594 | Msa0831280:CDS |
| GATTAAGCTATAAGATCTCA+AGG | 0.584279 | 5_4:+4300354 | None:intergenic |
| GTATGCACAGGTGTATGCGC+AGG | 0.584990 | 5_4:-4300720 | Msa0831280:CDS |
| TAGGTTCCACTTAGAGACCT+CGG | 0.606507 | 5_4:+4300598 | None:intergenic |
| ACAATGGTTAATTAGGGCCG+AGG | 0.607892 | 5_4:-4300615 | Msa0831280:CDS |
| ATTGATTAGTAGACAAGGTG+TGG | 0.611235 | 5_4:-4301636 | Msa0831280:CDS |
| ATTGATTAGTAGACAAGGTG+TGG | 0.611235 | 5_4:-4302244 | Msa0831280:CDS |
| TTTGAAAGAGCCTAAATGGG+TGG | 0.613559 | 5_4:+4301412 | None:intergenic |
| AAAAGATTGATTAGTAGACA+AGG | 0.621356 | 5_4:-4301641 | Msa0831280:CDS |
| AAAAGATTGATTAGTAGACA+AGG | 0.621356 | 5_4:-4302249 | Msa0831280:CDS |
| ACCGTATGCTTCTTTGTTTG+GGG | 0.627675 | 5_4:-4301336 | Msa0831280:CDS |
| ACCCCAAACAAAGAAGCATA+CGG | 0.633312 | 5_4:+4301335 | None:intergenic |
| AATTGGGATTGGAGTTGGCG+TGG | 0.637342 | 5_4:-4302147 | Msa0831280:intron |
| TTAGGGCCGAGGTCTCTAAG+TGG | 0.646091 | 5_4:-4300604 | Msa0831280:CDS |
| GTTTAAGCCAAGGATTAACA+GGG | 0.660650 | 5_4:-4301290 | Msa0831280:CDS |
| CTGATGATGAGAGCATACAA+TGG | 0.697198 | 5_4:-4300631 | Msa0831280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATAATATTTTTATTCTC+TGG | + | chr5_4:4300755-4300774 | None:intergenic | 10.0% |
| !! | TTAAAAGATAACCAATTAAA+TGG | + | chr5_4:4300796-4300815 | None:intergenic | 15.0% |
| !! | ATTATAGATATCATTACTTT+AGG | - | chr5_4:4301762-4301781 | Msa0831280:intron | 15.0% |
| !!! | CTTTTATCAAATTATTGAAA+TGG | - | chr5_4:4302430-4302449 | Msa0831280:CDS | 15.0% |
| !! | CATATATACTTCCATTTAAT+TGG | - | chr5_4:4300782-4300801 | Msa0831280:intron | 20.0% |
| !!! | TAGAATCATTAGTTTGTTTT+TGG | - | chr5_4:4300492-4300511 | Msa0831280:CDS | 20.0% |
| !! | ATCTATATTCATTTATCCAA+TGG | - | chr5_4:4301453-4301472 | Msa0831280:CDS | 20.0% |
| !!! | TTTTTAGATTTTAACTCCAT+TGG | - | chr5_4:4301658-4301677 | Msa0831280:CDS | 20.0% |
| !!! | TTTTAGATTTTAACTCCATT+GGG | - | chr5_4:4301659-4301678 | Msa0831280:CDS | 20.0% |
| !! | TATAATAAGTGATCAGATTA+TGG | + | chr5_4:4302254-4302273 | None:intergenic | 20.0% |
| ! | AAAAGATTGATTAGTAGACA+AGG | - | chr5_4:4300439-4300458 | Msa0831280:three_prime_UTR | 25.0% |
| !!! | GAATCATTAGTTTGTTTTTG+TGG | - | chr5_4:4300494-4300513 | Msa0831280:CDS | 25.0% |
| !! | TTTTCAATAGCAAGAGATAA+AGG | + | chr5_4:4300523-4300542 | None:intergenic | 25.0% |
| !!! | TATCTCTTGCTATTGAAAAT+TGG | - | chr5_4:4300524-4300543 | Msa0831280:CDS | 25.0% |
| !!! | ATCTCTTGCTATTGAAAATT+GGG | - | chr5_4:4300525-4300544 | Msa0831280:CDS | 25.0% |
| ! | TGATTAAAGCTGTGTTATAA+AGG | - | chr5_4:4300564-4300583 | Msa0831280:CDS | 25.0% |
| ! | TTAGAGGATATTTGCTTATA+AGG | - | chr5_4:4300587-4300606 | Msa0831280:CDS | 25.0% |
| !! | CTTAACTCAAAAGTTTGTTT+CGG | + | chr5_4:4300677-4300696 | None:intergenic | 25.0% |
| ! | AAAAGATTGATTAGTAGACA+AGG | - | chr5_4:4300439-4300458 | Msa0831280:three_prime_UTR | 25.0% |
| !!! | TTTGATTGTTTTGGATTTTG+AGG | - | chr5_4:4301130-4301149 | Msa0831280:intron | 25.0% |
| !! | TTTGTTTCTTATCCAATTTG+TGG | - | chr5_4:4301329-4301348 | Msa0831280:CDS | 25.0% |
| !! | ATTCATTTATCCAATGGTTT+TGG | - | chr5_4:4301459-4301478 | Msa0831280:CDS | 25.0% |
| !! | TTTGTGTTACTAAGTATAAG+AGG | + | chr5_4:4301697-4301716 | None:intergenic | 25.0% |
| ! | TTAAACAACTCAACATCAAA+TGG | + | chr5_4:4301859-4301878 | None:intergenic | 25.0% |
| ! | TTATAAGCAATCAATGACAT+TGG | - | chr5_4:4301892-4301911 | Msa0831280:intron | 25.0% |
| ! | TCAATGACATTGGTAAAATA+TGG | - | chr5_4:4301902-4301921 | Msa0831280:intron | 25.0% |
| !! | TTTGTTCATTTTGCACAAAT+TGG | - | chr5_4:4301934-4301953 | Msa0831280:intron | 25.0% |
| ! | TTTCAAATATTGTGCTTACT+TGG | - | chr5_4:4302275-4302294 | Msa0831280:CDS | 25.0% |
| ! | TTATAGCTTAATCGTTGTAT+TGG | - | chr5_4:4302344-4302363 | Msa0831280:intron | 25.0% |
| ! | TATAGCTTAATCGTTGTATT+GGG | - | chr5_4:4302345-4302364 | Msa0831280:intron | 25.0% |
| ! | AAATTATCTCTGCATTTCAA+TGG | + | chr5_4:4302383-4302402 | None:intergenic | 25.0% |
| TTCTCAGTTGTGAAGATTAA+TGG | - | chr5_4:4300273-4300292 | Msa0831280:three_prime_UTR | 30.0% | |
| !!! | TCATTAGTTTGTTTTTGTGG+AGG | - | chr5_4:4300497-4300516 | Msa0831280:CDS | 30.0% |
| ! | TTGCTATTGAAAATTGGGAT+TGG | - | chr5_4:4300530-4300549 | Msa0831280:CDS | 30.0% |
| AGGATATTTGCTTATAAGGT+TGG | - | chr5_4:4300591-4300610 | Msa0831280:CDS | 30.0% | |
| ! | TCAAAAGTTTGTTTCGGTTA+AGG | + | chr5_4:4300671-4300690 | None:intergenic | 30.0% |
| !!! | CGAAACAAACTTTTGAGTTA+AGG | - | chr5_4:4300675-4300694 | Msa0831280:CDS | 30.0% |
| TTAAGCATTAATTGTTGTGC+AGG | - | chr5_4:4300812-4300831 | Msa0831280:intron | 30.0% | |
| TTCTCAGTTGTGAAGATTAA+TGG | - | chr5_4:4300273-4300292 | Msa0831280:three_prime_UTR | 30.0% | |
| ! | GGTGATTTCTTTGATTGTTT+TGG | - | chr5_4:4301121-4301140 | Msa0831280:intron | 30.0% |
| !!! | CTCATACTTTTGATTTCTGA+AGG | - | chr5_4:4301204-4301223 | Msa0831280:CDS | 30.0% |
| !! | CATTTTGAAAGAGCCTAAAT+GGG | + | chr5_4:4301282-4301301 | None:intergenic | 30.0% |
| AATTCAAGAAGTTTAAGCCA+AGG | - | chr5_4:4301388-4301407 | Msa0831280:CDS | 30.0% | |
| !!! | TTGCACAAATTGGTTTTATC+AGG | - | chr5_4:4301944-4301963 | Msa0831280:intron | 30.0% |
| AGAGCATACAATGGTTAATT+AGG | - | chr5_4:4302066-4302085 | Msa0831280:intron | 30.0% | |
| GAGCATACAATGGTTAATTA+GGG | - | chr5_4:4302067-4302086 | Msa0831280:intron | 30.0% | |
| CACACTGAGTTTATCATATA+AGG | - | chr5_4:4302222-4302241 | Msa0831280:CDS | 30.0% | |
| GATTAAGCTATAAGATCTCA+AGG | + | chr5_4:4302337-4302356 | None:intergenic | 30.0% | |
| TCTTCACAACTGAGAAATCA+GGG | + | chr5_4:4300269-4300288 | None:intergenic | 35.0% | |
| ATCTTCACAACTGAGAAATC+AGG | + | chr5_4:4300270-4300289 | None:intergenic | 35.0% | |
| ATTGATTAGTAGACAAGGTG+TGG | - | chr5_4:4300444-4300463 | Msa0831280:three_prime_UTR | 35.0% | |
| TTGAAAATTGGGATTGGAGT+TGG | - | chr5_4:4300536-4300555 | Msa0831280:CDS | 35.0% | |
| AGCTGTGTTATAAAGGTTAG+AGG | - | chr5_4:4300571-4300590 | Msa0831280:CDS | 35.0% | |
| CTTTACAAATGACTGTGTTC+AGG | + | chr5_4:4300725-4300744 | None:intergenic | 35.0% | |
| TCTTCACAACTGAGAAATCA+GGG | + | chr5_4:4300269-4300288 | None:intergenic | 35.0% | |
| ATCTTCACAACTGAGAAATC+AGG | + | chr5_4:4300270-4300289 | None:intergenic | 35.0% | |
| ATTGATTAGTAGACAAGGTG+TGG | - | chr5_4:4300444-4300463 | Msa0831280:three_prime_UTR | 35.0% | |
| ! | TTTCTGAAGGTTGTTCCAAA+TGG | - | chr5_4:4301217-4301236 | Msa0831280:CDS | 35.0% |
| !! | CCATTTTGAAAGAGCCTAAA+TGG | + | chr5_4:4301283-4301302 | None:intergenic | 35.0% |
| CCATTTAGGCTCTTTCAAAA+TGG | - | chr5_4:4301280-4301299 | Msa0831280:CDS | 35.0% | |
| TCAAAATGGCTTATGTTGCT+TGG | - | chr5_4:4301294-4301313 | Msa0831280:CDS | 35.0% | |
| AGTTTAAGCCAAGGATTAAC+AGG | - | chr5_4:4301397-4301416 | Msa0831280:CDS | 35.0% | |
| GTTTAAGCCAAGGATTAACA+GGG | - | chr5_4:4301398-4301417 | Msa0831280:CDS | 35.0% | |
| TCAACATCATCAACCTTGAA+TGG | + | chr5_4:4301426-4301445 | None:intergenic | 35.0% | |
| !! | TTCAAGGTTGATGATGTTGA+AGG | - | chr5_4:4301426-4301445 | Msa0831280:CDS | 35.0% |
| GGAATTTGAACCAAAACCAT+TGG | + | chr5_4:4301472-4301491 | None:intergenic | 35.0% | |
| AAAAATGGAACGCAGAAGTT+TGG | + | chr5_4:4301522-4301541 | None:intergenic | 35.0% | |
| ACATCACCTCTTAGCAAAAA+TGG | + | chr5_4:4301537-4301556 | None:intergenic | 35.0% | |
| ! | GATTTTGCAAATGTCACAAG+AGG | - | chr5_4:4301616-4301635 | Msa0831280:CDS | 35.0% |
| CGAATCAGTAAAAGATCACA+TGG | + | chr5_4:4302023-4302042 | None:intergenic | 35.0% | |
| !! | TTACTGATTCGAGTACTTGA+CGG | - | chr5_4:4302032-4302051 | Msa0831280:intron | 35.0% |
| CATAATCTATCGGCATTGTT+TGG | - | chr5_4:4302124-4302143 | Msa0831280:intron | 35.0% | |
| AATACATAGTCACAGCTCAT+TGG | + | chr5_4:4302185-4302204 | None:intergenic | 35.0% | |
| ! | TATTGTGCTTACTTGGTTCT+AGG | - | chr5_4:4302282-4302301 | Msa0831280:CDS | 35.0% |
| !! | TGGTTCTAGGATGTATGATT+TGG | - | chr5_4:4302295-4302314 | Msa0831280:CDS | 35.0% |
| !! | GGTTCTAGGATGTATGATTT+GGG | - | chr5_4:4302296-4302315 | Msa0831280:CDS | 35.0% |
| ! | TAGGATGTATGATTTGGGTA+AGG | - | chr5_4:4302301-4302320 | Msa0831280:CDS | 35.0% |
| ! | GATGCTGACATTTAGGTTTG+TGG | - | chr5_4:4300300-4300319 | Msa0831280:three_prime_UTR | 40.0% |
| AGGTTTGTGGATAAAAACCG+CGG | - | chr5_4:4300313-4300332 | Msa0831280:three_prime_UTR | 40.0% | |
| ! | TACGTGAGTTTTGCTTCTCA+AGG | - | chr5_4:4300354-4300373 | Msa0831280:three_prime_UTR | 40.0% |
| TGGTAACTGTTCTTCTGGAT+TGG | - | chr5_4:4300401-4300420 | Msa0831280:three_prime_UTR | 40.0% | |
| AGGACTCACAAAAACGAACA+TGG | - | chr5_4:4300832-4300851 | Msa0831280:intron | 40.0% | |
| GGACTCACAAAAACGAACAT+GGG | - | chr5_4:4300833-4300852 | Msa0831280:intron | 40.0% | |
| GACTCACAAAAACGAACATG+GGG | - | chr5_4:4300834-4300853 | Msa0831280:intron | 40.0% | |
| ACTCACAAAAACGAACATGG+GGG | - | chr5_4:4300835-4300854 | Msa0831280:intron | 40.0% | |
| ! | GATGCTGACATTTAGGTTTG+TGG | - | chr5_4:4300300-4300319 | Msa0831280:three_prime_UTR | 40.0% |
| AGGTTTGTGGATAAAAACCG+CGG | - | chr5_4:4300313-4300332 | Msa0831280:three_prime_UTR | 40.0% | |
| ! | TACGTGAGTTTTGCTTCTCA+AGG | - | chr5_4:4300354-4300373 | Msa0831280:three_prime_UTR | 40.0% |
| TGGTAACTGTTCTTCTGGAT+TGG | - | chr5_4:4300401-4300420 | Msa0831280:three_prime_UTR | 40.0% | |
| ! | TTGTTGCTTACACTCAAGGT+TGG | - | chr5_4:4301153-4301172 | Msa0831280:intron | 40.0% |
| ! | ACACTCAAGGTTGGCATTTT+AGG | - | chr5_4:4301162-4301181 | Msa0831280:intron | 40.0% |
| ! | TCCAAATGGCTTTTGTTGCT+TGG | - | chr5_4:4301231-4301250 | Msa0831280:CDS | 40.0% |
| ACCAAGCAACAAAAGCCATT+TGG | + | chr5_4:4301235-4301254 | None:intergenic | 40.0% | |
| TTTGAAAGAGCCTAAATGGG+TGG | + | chr5_4:4301279-4301298 | None:intergenic | 40.0% | |
| ! | GACCGTATGCTTCTTTGTTT+GGG | - | chr5_4:4301351-4301370 | Msa0831280:CDS | 40.0% |
| ! | ACCGTATGCTTCTTTGTTTG+GGG | - | chr5_4:4301352-4301371 | Msa0831280:CDS | 40.0% |
| ! | ACCCCAAACAAAGAAGCATA+CGG | + | chr5_4:4301356-4301375 | None:intergenic | 40.0% |
| AATGGATCCCTGTTAATCCT+TGG | + | chr5_4:4301408-4301427 | None:intergenic | 40.0% | |
| GATTAACAGGGATCCATTCA+AGG | - | chr5_4:4301410-4301429 | Msa0831280:CDS | 40.0% | |
| !! | TGCGTTCCATTTTTGCTAAG+AGG | - | chr5_4:4301528-4301547 | Msa0831280:intron | 40.0% |
| ACAATTGCACTGAAACTTGC+TGG | + | chr5_4:4301568-4301587 | None:intergenic | 40.0% | |
| AGGTTGCAGATAATTCCCAA+TGG | + | chr5_4:4301677-4301696 | None:intergenic | 40.0% | |
| ! | GTTTTATCAGGTGTATGCAC+AGG | - | chr5_4:4301956-4301975 | Msa0831280:intron | 40.0% |
| CATTGTATGCTCTCATCATC+AGG | + | chr5_4:4302059-4302078 | None:intergenic | 40.0% | |
| ! | CTGATGATGAGAGCATACAA+TGG | - | chr5_4:4302057-4302076 | Msa0831280:intron | 40.0% |
| !! | AGATTATGTTGACTCCCGTT+AGG | + | chr5_4:4302112-4302131 | None:intergenic | 40.0% |
| CGGGAGTCAACATAATCTAT+CGG | - | chr5_4:4302114-4302133 | Msa0831280:intron | 40.0% | |
| TGGTGCAGATGCTGACATTT+AGG | - | chr5_4:4300293-4300312 | Msa0831280:three_prime_UTR | 45.0% | |
| CTTGTATAACATTCCTGCCG+CGG | + | chr5_4:4300333-4300352 | None:intergenic | 45.0% | |
| AGTTACCAACCCCCAACAAA+CGG | + | chr5_4:4300389-4300408 | None:intergenic | 45.0% | |
| !! | ACTGTTCTTCTGGATTGGCT+TGG | - | chr5_4:4300406-4300425 | Msa0831280:three_prime_UTR | 45.0% |
| CTCACAAAAACGAACATGGG+GGG | - | chr5_4:4300836-4300855 | Msa0831280:intron | 45.0% | |
| TGGTGCAGATGCTGACATTT+AGG | - | chr5_4:4300293-4300312 | Msa0831280:three_prime_UTR | 45.0% | |
| CTTGTATAACATTCCTGCCG+CGG | + | chr5_4:4300333-4300352 | None:intergenic | 45.0% | |
| AGTTACCAACCCCCAACAAA+CGG | + | chr5_4:4300389-4300408 | None:intergenic | 45.0% | |
| !! | ACTGTTCTTCTGGATTGGCT+TGG | - | chr5_4:4300406-4300425 | Msa0831280:three_prime_UTR | 45.0% |
| ! | GAGGTTGTTGCTTACACTCA+AGG | - | chr5_4:4301149-4301168 | Msa0831280:intron | 45.0% |
| GAAGCATACGGTCCACAAAT+TGG | + | chr5_4:4301344-4301363 | None:intergenic | 45.0% | |
| GGACCGTATGCTTCTTTGTT+TGG | - | chr5_4:4301350-4301369 | Msa0831280:CDS | 45.0% | |
| ! | TTCTTTGTTTGGGGTGCTCT+TGG | - | chr5_4:4301361-4301380 | Msa0831280:CDS | 45.0% |
| TCCAATGTGCAATGAGAAGC+AGG | - | chr5_4:4301489-4301508 | Msa0831280:intron | 45.0% | |
| ACCTGCTTCTCATTGCACAT+TGG | + | chr5_4:4301493-4301512 | None:intergenic | 45.0% | |
| ACAATGGTTAATTAGGGCCG+AGG | - | chr5_4:4302073-4302092 | Msa0831280:intron | 45.0% | |
| TAGGTTCCACTTAGAGACCT+CGG | + | chr5_4:4302093-4302112 | None:intergenic | 45.0% | |
| GGTCTCTAAGTGGAACCTAA+CGG | - | chr5_4:4302094-4302113 | Msa0831280:intron | 45.0% | |
| GTCTCTAAGTGGAACCTAAC+GGG | - | chr5_4:4302095-4302114 | Msa0831280:intron | 45.0% | |
| TTGTGGATAAAAACCGCGGC+AGG | - | chr5_4:4300317-4300336 | Msa0831280:three_prime_UTR | 50.0% | |
| !! | GGGGTTGGTAACTGTTCTTC+TGG | - | chr5_4:4300396-4300415 | Msa0831280:three_prime_UTR | 50.0% |
| AATTGGGATTGGAGTTGGCG+TGG | - | chr5_4:4300541-4300560 | Msa0831280:CDS | 50.0% | |
| ! | GAACATGGGGGGTGTGAAAA+TGG | - | chr5_4:4300847-4300866 | Msa0831280:intron | 50.0% |
| TTGTGGATAAAAACCGCGGC+AGG | - | chr5_4:4300317-4300336 | Msa0831280:three_prime_UTR | 50.0% | |
| !! | GGGGTTGGTAACTGTTCTTC+TGG | - | chr5_4:4300396-4300415 | Msa0831280:three_prime_UTR | 50.0% |
| GCACATTGCTCCACCCATTT+AGG | - | chr5_4:4301266-4301285 | Msa0831280:CDS | 50.0% | |
| AGGCTCATCGCACCGTTTGT+TGG | - | chr5_4:4300374-4300393 | Msa0831280:three_prime_UTR | 55.0% | |
| GGCTCATCGCACCGTTTGTT+GGG | - | chr5_4:4300375-4300394 | Msa0831280:three_prime_UTR | 55.0% | |
| ! | GCTCATCGCACCGTTTGTTG+GGG | - | chr5_4:4300376-4300395 | Msa0831280:three_prime_UTR | 55.0% |
| ! | CTCATCGCACCGTTTGTTGG+GGG | - | chr5_4:4300377-4300396 | Msa0831280:three_prime_UTR | 55.0% |
| ! | CATGGGGGGTGTGAAAATGG+AGG | - | chr5_4:4300850-4300869 | Msa0831280:intron | 55.0% |
| AGGCTCATCGCACCGTTTGT+TGG | - | chr5_4:4300374-4300393 | Msa0831280:three_prime_UTR | 55.0% | |
| GGCTCATCGCACCGTTTGTT+GGG | - | chr5_4:4300375-4300394 | Msa0831280:three_prime_UTR | 55.0% | |
| ! | GCTCATCGCACCGTTTGTTG+GGG | - | chr5_4:4300376-4300395 | Msa0831280:three_prime_UTR | 55.0% |
| ! | CTCATCGCACCGTTTGTTGG+GGG | - | chr5_4:4300377-4300396 | Msa0831280:three_prime_UTR | 55.0% |
| GTATGCACAGGTGTATGCGC+AGG | - | chr5_4:4301968-4301987 | Msa0831280:intron | 55.0% | |
| TTAGGGCCGAGGTCTCTAAG+TGG | - | chr5_4:4302084-4302103 | Msa0831280:intron | 55.0% | |
| CGGCATTGTTTGGTCAGCAC+TGG | - | chr5_4:4302134-4302153 | Msa0831280:intron | 55.0% | |
| ! | TCGCACCGTTTGTTGGGGGT+TGG | - | chr5_4:4300381-4300400 | Msa0831280:three_prime_UTR | 60.0% |
| ! | TCGCACCGTTTGTTGGGGGT+TGG | - | chr5_4:4300381-4300400 | Msa0831280:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 4300243 | 4302467 | 4300243 | ID=Msa0831280;Name=Msa0831280 |
| chr5_4 | mRNA | 4300243 | 4302467 | 4300243 | ID=Msa0831280-mRNA-1;Parent=Msa0831280;Name=Msa0831280-mRNA-1;_AED=0.25;_eAED=0.28;_QI=0|0.2|0.33|1|1|1|6|238|332 |
| chr5_4 | exon | 4300243 | 4300744 | 4300243 | ID=Msa0831280-mRNA-1:exon:1807;Parent=Msa0831280-mRNA-1 |
| chr5_4 | exon | 4301200 | 4301484 | 4301200 | ID=Msa0831280-mRNA-1:exon:1806;Parent=Msa0831280-mRNA-1 |
| chr5_4 | exon | 4301559 | 4301726 | 4301559 | ID=Msa0831280-mRNA-1:exon:1805;Parent=Msa0831280-mRNA-1 |
| chr5_4 | exon | 4301821 | 4301876 | 4301821 | ID=Msa0831280-mRNA-1:exon:1804;Parent=Msa0831280-mRNA-1 |
| chr5_4 | exon | 4302148 | 4302334 | 4302148 | ID=Msa0831280-mRNA-1:exon:1803;Parent=Msa0831280-mRNA-1 |
| chr5_4 | exon | 4302429 | 4302467 | 4302429 | ID=Msa0831280-mRNA-1:exon:1802;Parent=Msa0831280-mRNA-1 |
| chr5_4 | CDS | 4302429 | 4302467 | 4302429 | ID=Msa0831280-mRNA-1:cds;Parent=Msa0831280-mRNA-1 |
| chr5_4 | CDS | 4302148 | 4302334 | 4302148 | ID=Msa0831280-mRNA-1:cds;Parent=Msa0831280-mRNA-1 |
| chr5_4 | CDS | 4301821 | 4301876 | 4301821 | ID=Msa0831280-mRNA-1:cds;Parent=Msa0831280-mRNA-1 |
| chr5_4 | CDS | 4301559 | 4301726 | 4301559 | ID=Msa0831280-mRNA-1:cds;Parent=Msa0831280-mRNA-1 |
| chr5_4 | CDS | 4301200 | 4301484 | 4301200 | ID=Msa0831280-mRNA-1:cds;Parent=Msa0831280-mRNA-1 |
| chr5_4 | CDS | 4300481 | 4300744 | 4300481 | ID=Msa0831280-mRNA-1:cds;Parent=Msa0831280-mRNA-1 |
| chr5_4 | three_prime_UTR | 4300243 | 4300480 | 4300243 | ID=Msa0831280-mRNA-1:three_prime_utr;Parent=Msa0831280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
