AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1394310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394310 MtrunA17_Chr4g0071601 91.935 186 2 2 1 173 1 186 1.22e-120 338
Msa1394310 MtrunA17_Chr2g0333981 89.773 176 15 1 1 173 1 176 1.26e-113 320
Msa1394310 MtrunA17_Chr8g0379021 70.060 167 47 1 1 164 1 167 4.85e-83 243
Msa1394310 MtrunA17_Chr4g0018951 70.000 160 43 2 1 160 1 155 2.08e-70 210
Msa1394310 MtrunA17_Chr1g0206701 40.805 174 90 3 8 171 5 175 7.81e-42 140
Msa1394310 MtrunA17_Chr1g0206991 41.379 174 88 4 8 171 5 174 1.16e-41 138
Msa1394310 MtrunA17_Chr1g0149391 39.655 174 92 3 8 171 5 175 1.31e-40 137
Msa1394310 MtrunA17_Chr8g0355091 40.936 171 88 3 8 168 5 172 1.33e-40 137
Msa1394310 MtrunA17_Chr3g0099421 41.520 171 87 3 8 168 30 197 3.73e-40 136
Msa1394310 MtrunA17_Chr1g0206721 39.181 171 91 3 8 168 5 172 4.02e-39 133
Msa1394310 MtrunA17_Chr2g0292791 39.766 171 90 3 8 168 5 172 4.48e-39 133
Msa1394310 MtrunA17_Chr3g0119901 40.116 172 96 2 6 170 3 174 1.12e-38 131
Msa1394310 MtrunA17_Chr3g0085241 39.766 171 96 2 7 170 36 206 1.40e-36 127
Msa1394310 MtrunA17_Chr1g0208561 40.000 165 86 3 8 162 5 166 2.70e-35 123
Msa1394310 MtrunA17_Chr3g0089141 40.000 165 86 3 8 162 5 166 5.44e-35 122
Msa1394310 MtrunA17_Chr2g0325971 40.741 162 89 2 8 162 5 166 2.98e-34 120
Msa1394310 MtrunA17_Chr1g0208581 38.182 165 89 3 8 162 5 166 6.32e-34 119
Msa1394310 MtrunA17_Chr1g0206691 37.267 161 88 3 21 171 1 158 7.45e-33 116
Msa1394310 MtrunA17_Chr3g0099411 43.077 130 64 2 8 130 5 131 8.24e-33 116
Msa1394310 MtrunA17_Chr1g0188671 35.465 172 104 1 2 166 37 208 1.07e-31 115
Msa1394310 MtrunA17_Chr5g0422421 36.994 173 98 3 8 171 5 175 1.10e-31 114
Msa1394310 MtrunA17_Chr1g0187361 36.527 167 97 3 8 166 5 170 1.26e-31 114
Msa1394310 MtrunA17_Chr5g0419601 35.758 165 99 3 8 165 5 169 2.76e-31 113
Msa1394310 MtrunA17_Chr2g0317481 36.000 175 97 4 8 171 5 175 8.27e-30 109
Msa1394310 MtrunA17_Chr2g0317451 36.000 175 97 4 8 171 5 175 8.45e-30 109
Msa1394310 MtrunA17_Chr5g0422941 34.884 172 103 2 8 171 5 175 1.25e-27 103
Msa1394310 MtrunA17_Chr2g0300441 35.625 160 96 2 8 160 5 164 4.52e-27 102
Msa1394310 MtrunA17_Chr2g0300421 42.520 127 63 2 8 127 5 128 4.68e-27 100
Msa1394310 MtrunA17_Chr4g0074101 53.165 79 37 0 11 89 1 79 1.34e-24 94.7
Msa1394310 MtrunA17_Chr8g0376821 51.250 80 39 0 11 90 1 80 6.67e-24 92.4
Msa1394310 MtrunA17_Chr1g0169761 50.000 80 40 0 11 90 1 80 1.33e-23 91.7
Msa1394310 MtrunA17_Chr8g0356071 44.330 97 51 2 11 106 1 95 1.64e-23 90.9
Msa1394310 MtrunA17_Chr8g0345001 34.375 160 95 3 5 158 15 170 4.36e-23 90.5
Msa1394310 MtrunA17_Chr4g0052061 52.778 72 34 0 11 82 1 72 1.56e-22 88.2
Msa1394310 MtrunA17_Chr1g0175611 53.521 71 33 0 11 81 1 71 2.40e-22 88.2
Msa1394310 MtrunA17_Chr1g0180591 50.704 71 35 0 11 81 1 71 6.84e-22 87.0
Msa1394310 MtrunA17_Chr3g0089151 50.685 73 36 0 8 80 5 77 1.40e-21 85.1
Msa1394310 MtrunA17_Chr8g0357771 46.835 79 42 0 11 89 1 79 2.10e-21 85.9
Msa1394310 MtrunA17_Chr1g0175601 51.429 70 34 0 11 80 1 70 5.30e-21 84.7
Msa1394310 MtrunA17_Chr4g0052081 48.052 77 40 0 11 87 1 77 9.91e-21 84.0
Msa1394310 MtrunA17_Chr7g0238991 33.793 145 85 3 28 163 37 179 1.85e-20 85.1
Msa1394310 MtrunA17_Chr1g0187351 52.308 65 31 0 21 85 1 65 5.01e-20 79.3
Msa1394310 MtrunA17_Chr3g0111841 55.932 59 26 0 18 76 2 60 7.30e-20 79.0
Msa1394310 MtrunA17_Chr4g0020221 37.805 164 84 5 11 169 1 151 4.10e-19 81.6
Msa1394310 MtrunA17_Chr1g0204111 35.366 164 97 5 6 165 12 170 9.55e-19 80.5
Msa1394310 MtrunA17_Chr3g0111831 51.515 66 32 0 19 84 11 76 1.36e-18 75.9
Msa1394310 MtrunA17_Chr3g0097101 35.246 122 67 3 8 127 13 124 2.95e-18 79.0
Msa1394310 MtrunA17_Chr4g0049901 37.126 167 90 4 11 164 27 191 3.43e-18 79.0
Msa1394310 MtrunA17_Chr5g0412461 37.500 120 71 2 11 126 1 120 3.61e-18 78.6
Msa1394310 MtrunA17_Chr3g0093131 34.783 138 82 2 29 158 36 173 4.77e-18 77.4
Msa1394310 MtrunA17_Chr3g0077501 46.667 75 40 0 11 85 1 75 9.68e-18 77.4
Msa1394310 MtrunA17_Chr1g0173161 56.667 60 26 0 11 70 1 60 2.96e-17 72.4
Msa1394310 MtrunA17_Chr8g0351051 49.275 69 35 0 11 79 1 69 3.16e-17 76.3
Msa1394310 MtrunA17_Chr6g0474371 33.537 164 91 6 11 165 1 155 7.56e-17 74.3
Msa1394310 MtrunA17_Chr5g0412271 49.275 69 35 0 11 79 1 69 9.06e-17 74.7
Msa1394310 MtrunA17_Chr8g0380021 43.678 87 48 1 6 92 13 98 9.47e-17 75.1
Msa1394310 MtrunA17_Chr2g0279821 46.479 71 38 0 11 81 1 71 1.25e-16 74.7
Msa1394310 MtrunA17_Chr8g0351041 34.503 171 93 6 11 172 1 161 1.27e-16 73.2
Msa1394310 MtrunA17_Chr5g0425191 57.407 54 23 0 11 64 1 54 1.38e-16 71.2
Msa1394310 MtrunA17_Chr4g0049541 46.479 71 38 0 11 81 1 71 1.42e-16 74.3
Msa1394310 MtrunA17_Chr4g0061671 41.053 95 54 2 11 103 1 95 1.76e-16 73.2
Msa1394310 MtrunA17_Chr4g0044071 55.556 54 24 0 11 64 1 54 2.06e-16 71.2
Msa1394310 MtrunA17_Chr5g0427401 42.029 69 40 0 11 79 1 69 3.62e-16 73.2
Msa1394310 MtrunA17_Chr1g0164791 33.129 163 96 5 11 169 1 154 3.74e-16 73.2
Msa1394310 MtrunA17_Chr2g0284911 38.462 91 56 0 2 92 7 97 4.37e-16 73.6
Msa1394310 MtrunA17_Chr5g0404951 32.857 140 79 4 11 147 1 128 4.87e-16 72.8
Msa1394310 MtrunA17_Chr1g0159661 44.615 65 36 0 11 75 1 65 6.58e-16 71.6
Msa1394310 MtrunA17_Chr5g0427921 46.667 60 32 0 11 70 1 60 6.68e-16 68.2
Msa1394310 MtrunA17_Chr8g0351031 34.667 150 87 4 11 157 1 142 7.13e-16 72.4
Msa1394310 MtrunA17_Chr3g0142191 40.678 118 54 4 11 127 1 103 7.77e-16 72.4
Msa1394310 MtrunA17_Chr3g0134451 50.704 71 34 1 11 80 1 71 9.86e-16 73.2
Msa1394310 MtrunA17_Chr7g0246431 45.205 73 40 0 11 83 1 73 1.41e-15 71.2
Msa1394310 MtrunA17_Chr3g0125241 44.615 65 36 0 11 75 26 90 1.89e-15 70.9
Msa1394310 MtrunA17_Chr4g0057151 49.275 69 35 0 11 79 1 69 1.98e-15 70.9
Msa1394310 MtrunA17_Chr7g0246381 55.556 54 24 0 11 64 1 54 2.46e-15 67.0
Msa1394310 MtrunA17_Chr2g0308251 54.545 55 25 0 11 65 1 55 3.19e-15 67.4
Msa1394310 MtrunA17_Chr4g0061691 45.714 70 37 1 11 79 1 70 3.37e-15 70.5
Msa1394310 MtrunA17_Chr5g0411691 43.478 69 39 0 11 79 1 69 3.56e-15 70.9
Msa1394310 MtrunA17_Chr5g0420091 51.667 60 27 1 11 68 1 60 4.71e-15 70.1
Msa1394310 MtrunA17_Chr6g0455511 47.222 72 37 1 11 81 1 72 5.52e-15 70.5
Msa1394310 MtrunA17_Chr7g0220111 52.632 57 27 0 11 67 1 57 5.85e-15 70.1
Msa1394310 MtrunA17_Chr8g0366231 51.724 58 28 0 11 68 1 58 6.60e-15 70.1
Msa1394310 MtrunA17_Chr8g0377561 53.448 58 25 1 11 66 1 58 6.66e-15 67.0
Msa1394310 MtrunA17_Chr3g0122251 54.386 57 26 0 11 67 1 57 9.02e-15 69.7
Msa1394310 MtrunA17_Chr5g0420081 52.727 55 26 0 11 65 1 55 1.01e-14 69.3
Msa1394310 MtrunA17_Chr7g0220121 44.286 70 38 1 11 79 1 70 1.72e-14 68.9
Msa1394310 MtrunA17_Chr3g0111931 47.368 57 30 0 24 80 2 58 1.96e-14 65.9
Msa1394310 MtrunA17_Chr2g0302091 32.584 178 109 5 4 173 22 196 1.10e-13 66.2
Msa1394310 MtrunA17_Chr5g0417661 45.000 60 32 1 11 69 56 115 2.21e-13 63.5
Msa1394310 MtrunA17_Chr4g0018421 36.905 84 52 1 11 93 1 84 6.26e-13 63.9
Msa1394310 MtrunA17_Chr4g0060841 49.057 53 27 0 11 63 1 53 3.60e-12 63.5
Msa1394310 MtrunA17_Chr1g0166611 35.577 104 48 3 25 127 19 104 1.50e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394310 AT5G60440.1 37.288 177 97 4 8 173 3 176 6.10e-33 119
Msa1394310 AT2G24840.1 37.423 163 84 3 10 159 61 218 1.65e-29 109
Msa1394310 AT1G65360.1 35.152 165 101 2 8 166 3 167 7.60e-29 106
Msa1394310 AT1G01530.1 38.788 165 93 4 8 165 3 166 8.83e-28 104
Msa1394310 AT4G36590.1 34.731 167 84 4 12 159 7 167 3.23e-24 95.1
Msa1394310 AT2G34440.1 37.931 145 79 5 11 147 1 142 3.07e-23 90.9
Msa1394310 AT4G09960.6 35.252 139 76 4 11 147 2 128 1.07e-20 85.5
Msa1394310 AT4G09960.2 35.252 139 76 4 11 147 1 127 1.24e-20 85.1
Msa1394310 AT4G09960.1 35.252 139 76 4 11 147 1 127 1.25e-20 85.5
Msa1394310 AT4G09960.3 34.247 146 82 4 3 146 19 152 1.28e-20 85.9
Msa1394310 AT4G09960.5 35.252 139 76 4 11 147 11 137 1.42e-20 85.5
Msa1394310 AT3G66656.1 59.016 61 25 0 11 71 1 61 1.66e-20 84.0
Msa1394310 AT5G10140.4 38.037 163 77 7 11 164 1 148 2.10e-20 83.6
Msa1394310 AT5G10140.2 38.365 159 74 7 11 160 1 144 2.80e-20 83.2
Msa1394310 AT1G72350.1 30.539 167 85 3 12 173 43 183 2.81e-20 84.3
Msa1394310 AT5G10140.1 38.365 159 74 7 11 160 1 144 4.08e-20 83.2
Msa1394310 AT5G10140.3 36.478 159 82 6 11 168 1 141 1.10e-19 82.0
Msa1394310 AT3G57230.2 38.095 126 67 3 11 125 1 126 1.27e-19 80.9
Msa1394310 AT2G42830.1 36.508 126 68 3 4 127 9 124 2.67e-19 82.4
Msa1394310 AT4G09960.4 35.507 138 75 4 11 146 96 221 3.07e-19 83.2
Msa1394310 AT2G42830.2 36.508 126 68 3 4 127 9 124 3.29e-19 82.0
Msa1394310 AT3G57230.1 38.095 126 67 3 11 125 1 126 1.18e-18 80.5
Msa1394310 AT3G57230.4 38.095 126 67 3 11 125 1 126 1.18e-18 80.5
Msa1394310 AT5G13790.2 48.235 85 42 1 11 95 1 83 1.69e-18 80.5
Msa1394310 AT5G23260.3 33.117 154 91 3 11 160 1 146 2.09e-18 79.7
Msa1394310 AT5G23260.4 49.351 77 37 1 6 80 12 88 2.12e-18 80.1
Msa1394310 AT5G23260.1 49.351 77 37 1 6 80 12 88 2.13e-18 80.1
Msa1394310 AT1G77950.3 50.704 71 34 1 11 80 1 71 3.59e-18 79.3
Msa1394310 AT1G77950.2 50.704 71 34 1 11 80 1 71 3.59e-18 79.3
Msa1394310 AT1G77950.1 50.704 71 34 1 11 80 1 71 3.59e-18 79.3
Msa1394310 AT1G77950.4 50.704 71 34 1 11 80 1 71 3.59e-18 79.3
Msa1394310 AT5G65050.2 36.620 142 72 5 11 148 1 128 3.79e-18 77.8
Msa1394310 AT1G77980.1 43.158 95 48 2 11 104 1 90 4.08e-18 80.1
Msa1394310 AT3G54340.1 36.522 115 59 1 11 125 1 101 6.82e-18 78.2
Msa1394310 AT2G22540.3 33.133 166 96 4 11 164 1 163 6.85e-18 78.6
Msa1394310 AT2G22540.1 33.133 166 96 4 11 164 1 163 6.85e-18 78.6
Msa1394310 AT2G45660.2 34.058 138 79 4 11 147 1 127 6.91e-18 76.6
Msa1394310 AT3G58780.5 36.441 118 63 3 9 124 20 127 7.87e-18 78.6
Msa1394310 AT3G58780.1 36.441 118 63 3 9 124 14 121 7.91e-18 78.2
Msa1394310 AT5G13790.1 53.623 69 32 0 11 79 1 69 8.03e-18 78.6
Msa1394310 AT3G58780.4 36.441 118 63 3 9 124 14 121 1.09e-17 78.6
Msa1394310 AT5G62165.14 46.835 79 42 0 11 89 1 79 1.11e-17 74.7
Msa1394310 AT5G65050.1 36.620 142 72 5 11 148 1 128 1.32e-17 76.3
Msa1394310 AT5G62165.17 46.835 79 42 0 11 89 1 79 1.35e-17 75.9
Msa1394310 AT5G62165.12 46.835 79 42 0 11 89 1 79 1.35e-17 75.9
Msa1394310 AT5G62165.11 46.835 79 42 0 11 89 1 79 1.35e-17 75.9
Msa1394310 AT5G51870.5 48.101 79 41 0 8 86 21 99 1.55e-17 76.6
Msa1394310 AT5G23260.2 51.389 72 33 1 11 80 1 72 1.61e-17 77.4
Msa1394310 AT5G62165.6 46.835 79 42 0 11 89 1 79 1.73e-17 75.5
Msa1394310 AT5G62165.9 46.835 79 42 0 11 89 1 79 1.73e-17 75.5
Msa1394310 AT5G62165.7 46.835 79 42 0 11 89 1 79 1.73e-17 75.5
Msa1394310 AT5G62165.8 46.835 79 42 0 11 89 1 79 1.73e-17 75.5
Msa1394310 AT5G62165.13 46.835 79 42 0 11 89 1 79 1.73e-17 75.5
Msa1394310 AT5G65050.3 36.620 142 72 5 11 148 1 128 1.76e-17 76.3
Msa1394310 AT1G22130.1 43.158 95 48 2 11 104 1 90 2.33e-17 78.2
Msa1394310 AT4G37940.4 45.333 75 41 0 11 85 1 75 2.99e-17 76.3
Msa1394310 AT4G24540.1 50.725 69 34 0 11 79 1 69 3.46e-17 76.3
Msa1394310 AT4G37940.1 45.333 75 41 0 11 85 1 75 3.56e-17 76.3
Msa1394310 AT4G22950.2 33.544 158 91 5 11 161 1 151 3.68e-17 75.1
Msa1394310 AT5G51860.2 47.368 76 40 0 11 86 1 76 4.02e-17 75.5
Msa1394310 AT5G62165.10 46.835 79 42 0 11 89 1 79 4.34e-17 75.5
Msa1394310 AT5G62165.4 46.835 79 42 0 11 89 1 79 4.34e-17 75.5
Msa1394310 AT5G62165.3 46.835 79 42 0 11 89 1 79 4.51e-17 75.5
Msa1394310 AT5G62165.1 46.835 79 42 0 11 89 1 79 4.51e-17 75.5
Msa1394310 AT5G62165.2 46.835 79 42 0 11 89 1 79 4.51e-17 75.5
Msa1394310 AT4G18960.1 35.000 140 73 5 12 147 18 143 4.71e-17 76.3
Msa1394310 AT5G51870.2 48.684 76 39 0 11 86 1 76 4.74e-17 74.7
Msa1394310 AT5G51860.1 47.368 76 40 0 11 86 1 76 6.08e-17 75.5
Msa1394310 AT4G37940.3 45.333 75 41 0 11 85 1 75 6.86e-17 74.3
Msa1394310 AT5G51870.1 48.684 76 39 0 11 86 1 76 7.06e-17 75.1
Msa1394310 AT2G45660.1 34.058 138 79 4 11 147 1 127 7.81e-17 75.1
Msa1394310 AT3G57390.3 44.186 86 48 0 11 96 1 86 9.30e-17 75.1
Msa1394310 AT4G22950.3 33.544 158 91 5 11 161 1 151 9.44e-17 75.1
Msa1394310 AT4G22950.1 33.544 158 91 5 11 161 1 151 9.44e-17 75.1
Msa1394310 AT5G65060.3 34.507 142 75 5 11 148 1 128 1.07e-16 74.3
Msa1394310 AT2G22540.2 33.133 166 91 5 11 164 1 158 1.23e-16 75.1
Msa1394310 AT5G20240.2 39.831 118 66 4 11 125 1 116 1.38e-16 72.8
Msa1394310 AT2G45650.1 49.275 69 35 0 11 79 1 69 1.43e-16 75.1
Msa1394310 AT5G51870.3 48.052 77 40 0 10 86 10 86 1.50e-16 74.7
Msa1394310 AT5G51870.4 48.684 76 39 0 11 86 1 76 1.54e-16 74.3
Msa1394310 AT3G58780.2 37.288 118 55 4 9 124 14 114 1.82e-16 74.7
Msa1394310 AT5G20240.1 38.983 118 67 4 11 125 1 116 2.15e-16 73.9
Msa1394310 AT3G57390.1 44.186 86 48 0 11 96 1 86 2.38e-16 74.3
Msa1394310 AT3G61120.1 45.070 71 39 0 11 81 1 71 2.43e-16 74.3
Msa1394310 AT3G04100.1 31.361 169 105 5 8 165 10 178 2.47e-16 73.6
Msa1394310 AT2G22630.1 46.377 69 37 0 11 79 1 69 2.57e-16 73.9
Msa1394310 AT2G22630.2 46.377 69 37 0 11 79 1 69 2.57e-16 73.9
Msa1394310 AT5G65060.1 32.692 156 80 5 11 160 1 137 2.66e-16 73.2
Msa1394310 AT1G28460.1 31.977 172 93 5 8 162 4 168 2.88e-16 72.8
Msa1394310 AT5G65070.4 44.286 70 38 1 11 79 1 70 6.17e-16 71.2
Msa1394310 AT5G65050.5 43.333 90 49 2 11 98 1 90 6.86e-16 72.0
Msa1394310 AT4G11880.2 51.613 62 30 0 11 72 1 62 1.00e-15 71.2
Msa1394310 AT4G11880.3 51.613 62 30 0 11 72 1 62 1.00e-15 71.2
Msa1394310 AT3G30260.1 54.545 55 25 0 11 65 1 55 1.28e-15 72.4
Msa1394310 AT5G65070.1 44.286 70 38 1 11 79 1 70 1.32e-15 71.6
Msa1394310 AT1G47760.1 46.970 66 35 0 11 76 1 66 1.37e-15 71.2
Msa1394310 AT5G65060.2 34.821 112 68 3 11 117 1 112 1.74e-15 70.9
Msa1394310 AT2G03710.3 41.053 95 52 2 11 101 1 95 1.85e-15 70.9
Msa1394310 AT4G11880.4 55.172 58 26 0 11 68 1 58 2.51e-15 71.2
Msa1394310 AT4G11880.1 55.172 58 26 0 11 68 1 58 2.51e-15 71.2
Msa1394310 AT1G71692.1 42.169 83 47 1 11 92 1 83 3.64e-15 70.5
Msa1394310 AT5G65070.2 44.286 70 38 1 11 79 1 70 3.65e-15 70.9
Msa1394310 AT5G65070.5 44.286 70 38 1 11 79 1 70 4.45e-15 70.5
Msa1394310 AT2G03710.1 41.053 95 52 2 11 101 1 95 5.29e-15 70.9
Msa1394310 AT2G03710.2 41.053 95 52 2 11 101 1 95 5.45e-15 70.9
Msa1394310 AT3G58780.3 50.000 60 30 0 9 68 14 73 6.06e-15 70.9
Msa1394310 AT5G65080.3 31.410 156 94 4 11 166 8 150 6.14e-15 69.7
Msa1394310 AT5G15800.1 38.318 107 59 3 11 110 1 107 7.03e-15 70.5
Msa1394310 AT1G29962.1 30.286 175 95 5 8 162 4 171 8.73e-15 68.9
Msa1394310 AT1G69120.2 50.000 58 29 0 11 68 1 58 9.23e-15 69.7
Msa1394310 AT1G26310.1 51.724 58 28 0 11 68 1 58 1.00e-14 70.1
Msa1394310 AT5G60910.1 54.545 55 25 0 11 65 1 55 1.04e-14 69.7
Msa1394310 AT2G14210.1 36.275 102 44 2 11 112 1 81 1.11e-14 69.7
Msa1394310 AT5G65070.3 47.541 61 32 0 11 71 1 61 1.18e-14 69.7
Msa1394310 AT4G37435.1 52.632 57 27 0 11 67 1 57 1.24e-14 68.6
Msa1394310 AT3G02310.2 38.318 107 59 3 11 110 1 107 1.29e-14 68.9
Msa1394310 AT1G24260.1 52.632 57 27 0 11 67 1 57 1.38e-14 69.7
Msa1394310 AT1G24260.2 52.632 57 27 0 11 67 1 57 1.39e-14 69.7
Msa1394310 AT5G15800.2 38.318 107 59 3 11 110 1 107 1.41e-14 69.7
Msa1394310 AT1G24260.3 52.632 57 27 0 11 67 1 57 1.51e-14 69.3
Msa1394310 AT2G14210.2 36.275 102 44 2 11 112 1 81 1.56e-14 69.3
Msa1394310 AT1G69120.1 52.727 55 26 0 11 65 1 55 2.41e-14 68.9
Msa1394310 AT5G65080.2 32.704 159 87 5 11 166 8 149 4.96e-14 67.4
Msa1394310 AT3G02310.1 52.632 57 27 0 11 67 1 57 5.01e-14 68.2
Msa1394310 AT1G28450.1 28.313 166 106 3 8 160 4 169 3.20e-13 64.7
Msa1394310 AT1G18750.1 31.081 148 89 4 11 158 1 135 5.11e-13 66.2
Msa1394310 AT1G18750.4 31.081 148 89 4 11 158 1 135 5.26e-13 66.2
Msa1394310 AT2G26320.1 45.902 61 33 0 8 68 14 74 2.26e-12 60.8
Msa1394310 AT1G69540.1 33.721 86 56 1 11 95 1 86 2.43e-12 64.3
Msa1394310 AT1G31140.2 40.476 84 49 1 11 94 1 83 2.55e-12 63.2
Msa1394310 AT1G31140.1 40.476 84 49 1 11 94 1 83 2.70e-12 62.8
Msa1394310 AT2G03060.3 45.763 59 31 1 11 68 1 59 3.50e-12 63.9
Msa1394310 AT2G03060.7 45.763 59 31 1 11 68 1 59 3.50e-12 63.9
Msa1394310 AT2G03060.1 45.763 59 31 1 11 68 1 59 3.50e-12 63.9
Msa1394310 AT2G03060.2 45.763 59 31 1 11 68 1 59 4.28e-12 63.5
Msa1394310 AT1G69540.2 33.721 86 56 1 11 95 1 86 4.50e-12 63.5
Msa1394310 AT5G49490.1 34.884 86 52 1 1 82 34 119 6.64e-12 62.8
Msa1394310 AT1G18750.3 43.860 57 32 0 11 67 1 57 8.07e-12 62.8
Msa1394310 AT1G77080.5 38.095 105 63 2 11 113 1 105 8.56e-12 60.8
Msa1394310 AT1G77080.11 38.095 105 63 2 11 113 1 105 8.73e-12 60.8
Msa1394310 AT1G77080.4 38.095 105 63 2 11 113 1 105 1.51e-11 60.5
Msa1394310 AT1G77080.8 36.893 103 63 2 11 111 1 103 6.20e-11 59.3
Msa1394310 AT1G77080.12 62.500 40 15 0 11 50 1 40 9.99e-11 57.4

Find 32 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGAAGATGTTCAAAATT+TGG 0.191288 tig0021786:+30789 Msa1394310:CDS
CTTCCTCCTTAACTCATAAA+TGG 0.253752 tig0021786:-30884 None:intergenic
GTCCCATGTTCTTCTTTCTT+TGG 0.262352 tig0021786:-30450 None:intergenic
CTAACATTTCACCATGGATA+TGG 0.287475 tig0021786:+30423 None:intergenic
CGTATTGTCTATTGTAATCT+TGG 0.348313 tig0021786:-30729 None:intergenic
TGATATCCATTTATGAGTTA+AGG 0.354781 tig0021786:+30878 Msa1394310:CDS
CAAAGGAACCACTGAGTTTG+AGG 0.435112 tig0021786:+30675 Msa1394310:CDS
TTCCTTTGATGTAGCTATTG+AGG 0.439823 tig0021786:-30660 None:intergenic
TGGCTAAGGGTGGTGATTGG+TGG 0.478295 tig0021786:+30809 Msa1394310:CDS
AAGGAGGAAGCTTGTTGAAA+GGG 0.480405 tig0021786:+30897 Msa1394310:CDS
TTGAGGACAGAGTTTGTGTC+GGG 0.481655 tig0021786:-30643 None:intergenic
AGATGTTCAAAATTTGGCTA+AGG 0.492534 tig0021786:+30795 Msa1394310:CDS
CACTGAGTTTGAGGATTCAA+AGG 0.500912 tig0021786:+30684 Msa1394310:CDS
TTGTCTATTGTAATCTTGGT+AGG 0.501096 tig0021786:-30725 None:intergenic
ATTTGGCTAAGGGTGGTGAT+TGG 0.510604 tig0021786:+30806 Msa1394310:CDS
GATGTTCAAAATTTGGCTAA+GGG 0.514220 tig0021786:+30796 Msa1394310:CDS
CGAGGAGGCACAAAAGATGT+TGG 0.535351 tig0021786:+30750 Msa1394310:CDS
TCTTTGGTTAACCATATCCA+TGG 0.535708 tig0021786:-30434 None:intergenic
TAAGGAGGAAGCTTGTTGAA+AGG 0.551823 tig0021786:+30896 Msa1394310:CDS
ACCAGGAGAAAACACAATGA+TGG 0.578333 tig0021786:-30596 None:intergenic
GGCACAAAAGATGTTGGAGA+TGG 0.578550 tig0021786:+30756 Msa1394310:CDS
ATTGAGGACAGAGTTTGTGT+CGG 0.591392 tig0021786:-30644 None:intergenic
TATCCATTTATGAGTTAAGG+AGG 0.599134 tig0021786:+30881 Msa1394310:CDS
CAAGAAGATTGAGATCAAGA+AGG 0.609869 tig0021786:+30474 Msa1394310:CDS
GTCCTCAATAGCTACATCAA+AGG 0.616699 tig0021786:+30658 Msa1394310:CDS
GTTCAAAATTTGGCTAAGGG+TGG 0.631185 tig0021786:+30799 Msa1394310:CDS
AACCAAAGAAAGAAGAACAT+GGG 0.647859 tig0021786:+30448 Msa1394310:CDS
TAACCAAAGAAAGAAGAACA+TGG 0.648089 tig0021786:+30447 Msa1394310:CDS
CTTTGAATCCTCAAACTCAG+TGG 0.661108 tig0021786:-30683 None:intergenic
AAACAAAATAGTTTGTCACC+AGG 0.670457 tig0021786:-30613 None:intergenic
AGATTACAATAGACAATACG+AGG 0.717394 tig0021786:+30732 Msa1394310:CDS
TTACAATAGACAATACGAGG+AGG 0.759658 tig0021786:+30735 Msa1394310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTTCAAAAAGAAGACA+AGG + tig0021786:30523-30542 Msa1394310:CDS 25.0%
! ACTAGAAGATGTTCAAAATT+TGG + tig0021786:30789-30808 Msa1394310:CDS 25.0%
! TGATATCCATTTATGAGTTA+AGG + tig0021786:30878-30897 Msa1394310:CDS 25.0%
TAACCAAAGAAAGAAGAACA+TGG + tig0021786:30447-30466 Msa1394310:CDS 30.0%
AACCAAAGAAAGAAGAACAT+GGG + tig0021786:30448-30467 Msa1394310:CDS 30.0%
! AAACAAAATAGTTTGTCACC+AGG - tig0021786:30616-30635 None:intergenic 30.0%
!! GGTGACAAACTATTTTGTTT+TGG + tig0021786:30616-30635 Msa1394310:CDS 30.0%
TTGTCTATTGTAATCTTGGT+AGG - tig0021786:30728-30747 None:intergenic 30.0%
CGTATTGTCTATTGTAATCT+TGG - tig0021786:30732-30751 None:intergenic 30.0%
AGATTACAATAGACAATACG+AGG + tig0021786:30732-30751 Msa1394310:CDS 30.0%
AGATGTTCAAAATTTGGCTA+AGG + tig0021786:30795-30814 Msa1394310:CDS 30.0%
GATGTTCAAAATTTGGCTAA+GGG + tig0021786:30796-30815 Msa1394310:CDS 30.0%
TATCCATTTATGAGTTAAGG+AGG + tig0021786:30881-30900 Msa1394310:CDS 30.0%
CAAGAAGATTGAGATCAAGA+AGG + tig0021786:30474-30493 Msa1394310:CDS 35.0%
TTCCTTTGATGTAGCTATTG+AGG - tig0021786:30663-30682 None:intergenic 35.0%
TTACAATAGACAATACGAGG+AGG + tig0021786:30735-30754 Msa1394310:CDS 35.0%
CTTCCTCCTTAACTCATAAA+TGG - tig0021786:30887-30906 None:intergenic 35.0%
GTCCCATGTTCTTCTTTCTT+TGG - tig0021786:30453-30472 None:intergenic 40.0%
ACCAGGAGAAAACACAATGA+TGG - tig0021786:30599-30618 None:intergenic 40.0%
ATTGAGGACAGAGTTTGTGT+CGG - tig0021786:30647-30666 None:intergenic 40.0%
GTCCTCAATAGCTACATCAA+AGG + tig0021786:30658-30677 Msa1394310:CDS 40.0%
CTTTGAATCCTCAAACTCAG+TGG - tig0021786:30686-30705 None:intergenic 40.0%
CACTGAGTTTGAGGATTCAA+AGG + tig0021786:30684-30703 Msa1394310:CDS 40.0%
GTTCAAAATTTGGCTAAGGG+TGG + tig0021786:30799-30818 Msa1394310:CDS 40.0%
!! TAAGGAGGAAGCTTGTTGAA+AGG + tig0021786:30896-30915 Msa1394310:CDS 40.0%
!! AAGGAGGAAGCTTGTTGAAA+GGG + tig0021786:30897-30916 Msa1394310:CDS 40.0%
! GCCATCATTGTGTTTTCTCC+TGG + tig0021786:30595-30614 Msa1394310:CDS 45.0%
TTGAGGACAGAGTTTGTGTC+GGG - tig0021786:30646-30665 None:intergenic 45.0%
CAAAGGAACCACTGAGTTTG+AGG + tig0021786:30675-30694 Msa1394310:CDS 45.0%
GGCACAAAAGATGTTGGAGA+TGG + tig0021786:30756-30775 Msa1394310:CDS 45.0%
ATTTGGCTAAGGGTGGTGAT+TGG + tig0021786:30806-30825 Msa1394310:CDS 45.0%
! CGAGGAGGCACAAAAGATGT+TGG + tig0021786:30750-30769 Msa1394310:CDS 50.0%
TGGCTAAGGGTGGTGATTGG+TGG + tig0021786:30809-30828 Msa1394310:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0021786 gene 30436 30957 30436 ID=Msa1394310;Name=Msa1394310
tig0021786 mRNA 30436 30957 30436 ID=Msa1394310-mRNA-1;Parent=Msa1394310;Name=Msa1394310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|173
tig0021786 exon 30436 30957 30436 ID=Msa1394310-mRNA-1:exon:14265;Parent=Msa1394310-mRNA-1
tig0021786 CDS 30436 30957 30436 ID=Msa1394310-mRNA-1:cds;Parent=Msa1394310-mRNA-1
Gene Sequence

>Msa1394310

ATGGATATGGTTAACCAAAGAAAGAAGAACATGGGACGCAAGAAGATTGAGATCAAGAAGGTTGAGAAAGAATCACAGAAACAAGTCACTTTTTCAAAAAGAAGACAAGGTTTATTCAGAAAAGCAAGCGAACTTTGTGTCTTATGTGATGTTCATGCAGCCATCATTGTGTTTTCTCCTGGTGACAAACTATTTTGTTTTGGTCAACCCGACACAAACTCTGTCCTCAATAGCTACATCAAAGGAACCACTGAGTTTGAGGATTCAAAGGTAGCAGAAAATTTTCTGACCTACCAAGATTACAATAGACAATACGAGGAGGCACAAAAGATGTTGGAGATGGAAAAGAAGAAACTAGAAGATGTTCAAAATTTGGCTAAGGGTGGTGATTGGTGGAATGATTCAATCGATGATATGAGTAGTGATCAACTTGAACAATTTATGATATCCATTTATGAGTTAAGGAGGAAGCTTGTTGAAAGGGCTGATGAACTTGTCATGAAGCAAAGTGCCATGCCGTAG
Protein sequence

>Msa1394310

MDMVNQRKKNMGRKKIEIKKVEKESQKQVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPGDKLFCFGQPDTNSVLNSYIKGTTEFEDSKVAENFLTYQDYNRQYEEAQKMLEMEKKKLEDVQNLAKGGDWWNDSIDDMSSDQLEQFMISIYELRRKLVERADELVMKQSAMP*