AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0299580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299580 MtrunA17_Chr2g0324061 94.375 480 17 2 1 480 1 470 0.0 926
Msa0299580 MtrunA17_Chr4g0022171 79.630 486 77 5 1 480 1 470 0.0 763
Msa0299580 MtrunA17_Chr7g0249421 50.110 453 192 6 45 477 50 488 8.59e-146 426
Msa0299580 MtrunA17_Chr7g0221691 51.042 384 162 7 1 374 42 409 5.10e-130 384
Msa0299580 MtrunA17_Chr7g0243571 43.602 422 189 9 56 474 57 432 5.31e-115 346
Msa0299580 MtrunA17_Chr8g0342431 46.832 363 129 7 45 373 40 372 3.06e-103 314
Msa0299580 MtrunA17_Chr1g0192421 45.938 320 150 4 55 373 53 350 2.93e-101 307
Msa0299580 MtrunA17_Chr4g0067711 47.115 312 142 5 63 373 63 352 4.22e-101 307
Msa0299580 MtrunA17_Chr7g0272061 45.317 331 161 5 55 381 55 369 1.33e-100 306
Msa0299580 MtrunA17_Chr2g0295401 47.452 314 142 7 61 373 62 353 8.61e-100 304
Msa0299580 MtrunA17_Chr4g0004971 45.122 328 155 5 51 374 38 344 1.20e-98 300
Msa0299580 MtrunA17_Chr1g0151781 46.584 322 149 4 55 376 33 331 7.63e-88 272
Msa0299580 MtrunA17_Chr4g0066371 27.329 322 168 10 73 375 68 342 6.35e-25 106
Msa0299580 MtrunA17_Chr6g0486661 29.846 325 159 12 73 375 106 383 8.01e-25 108
Msa0299580 MtrunA17_Chr5g0396731 31.353 303 141 10 44 335 54 300 6.02e-24 102
Msa0299580 MtrunA17_Chr2g0286951 28.182 330 171 11 73 383 69 351 6.57e-22 97.8
Msa0299580 MtrunA17_Chr5g0435721 35.829 187 82 7 160 333 258 419 3.02e-18 87.4
Msa0299580 MtrunA17_Chr3g0135961 27.331 311 161 12 25 332 236 484 1.28e-17 85.5
Msa0299580 MtrunA17_Chr6g0483411 29.565 230 114 8 161 372 119 318 2.34e-17 82.8
Msa0299580 MtrunA17_Chr3g0136711 30.667 225 120 8 161 382 100 291 3.15e-17 82.4
Msa0299580 MtrunA17_Chr1g0150451 32.461 191 102 6 161 350 143 307 1.72e-16 80.5
Msa0299580 MtrunA17_Chr4g0070871 27.347 245 128 8 88 332 251 445 1.54e-15 79.0
Msa0299580 MtrunA17_Chr1g0212961 29.008 262 119 9 90 350 126 321 1.69e-15 77.8
Msa0299580 MtrunA17_Chr2g0299981 27.519 258 153 7 76 328 248 476 1.56e-14 75.9
Msa0299580 MtrunA17_Chr2g0279151 32.461 191 102 8 163 352 102 266 2.62e-14 73.2
Msa0299580 MtrunA17_Chr1g0175381 26.748 329 173 16 87 386 76 365 6.01e-14 73.6
Msa0299580 MtrunA17_Chr2g0317021 34.921 189 88 9 187 373 177 332 2.47e-13 71.2
Msa0299580 MtrunA17_Chr3g0115851 33.019 212 101 11 166 372 106 281 2.59e-13 70.5
Msa0299580 MtrunA17_Chr3g0136811 28.814 295 149 13 65 333 28 287 2.65e-13 71.2
Msa0299580 MtrunA17_Chr8g0360351 33.673 196 100 10 159 350 96 265 3.06e-13 70.1
Msa0299580 MtrunA17_Chr1g0150781 25.078 319 169 11 17 332 237 488 4.43e-13 71.2
Msa0299580 MtrunA17_Chr1g0158781 31.034 174 93 5 160 333 184 330 2.52e-12 68.6
Msa0299580 MtrunA17_Chr1g0150071 27.931 290 158 12 65 333 28 287 7.20e-12 66.6
Msa0299580 MtrunA17_Chr4g0051661 32.984 191 98 8 162 350 219 381 7.98e-12 67.0
Msa0299580 MtrunA17_Chr3g0126511 30.159 189 105 5 163 350 162 324 1.30e-11 66.2
Msa0299580 MtrunA17_Chr5g0407161 25.397 252 113 9 90 333 124 308 1.77e-11 65.9
Msa0299580 MtrunA17_Chr3g0144111 29.064 203 95 9 163 352 47 213 3.12e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299580 AT4G03415.1 72.707 458 104 6 21 477 28 465 0.0 624
Msa0299580 AT4G03415.3 72.707 458 104 6 21 477 28 465 0.0 624
Msa0299580 AT4G03415.2 72.707 458 104 6 21 477 28 465 0.0 624
Msa0299580 AT1G03590.1 66.112 481 143 4 1 480 1 462 0.0 620
Msa0299580 AT1G16220.1 48.899 454 188 10 42 473 46 477 3.26e-143 420
Msa0299580 AT3G02750.2 46.720 503 223 8 1 473 1 488 1.61e-141 416
Msa0299580 AT3G02750.1 46.720 503 223 8 1 473 1 488 1.61e-141 416
Msa0299580 AT1G79630.1 48.115 451 188 9 51 473 58 490 6.30e-141 414
Msa0299580 AT1G79630.8 48.115 451 188 9 51 473 54 486 1.11e-140 414
Msa0299580 AT5G36250.2 46.889 450 174 8 45 473 52 457 3.95e-137 403
Msa0299580 AT5G36250.1 46.517 445 169 8 45 473 52 443 2.75e-134 395
Msa0299580 AT3G02750.3 43.680 538 223 9 1 473 1 523 3.11e-133 395
Msa0299580 AT1G79630.2 47.268 421 176 9 81 473 18 420 2.21e-125 372
Msa0299580 AT1G79630.7 47.268 421 176 9 81 473 18 420 2.21e-125 372
Msa0299580 AT1G79630.6 45.980 398 170 8 103 473 1 380 3.06e-111 335
Msa0299580 AT1G79630.3 45.980 398 170 8 103 473 1 380 3.06e-111 335
Msa0299580 AT1G79630.4 45.980 398 170 8 103 473 1 380 3.06e-111 335
Msa0299580 AT1G79630.5 45.980 398 170 8 103 473 1 380 3.06e-111 335
Msa0299580 AT5G36250.3 53.357 283 119 3 45 314 52 334 4.71e-106 320
Msa0299580 AT3G05640.2 45.511 323 148 4 52 373 54 349 3.55e-101 307
Msa0299580 AT3G05640.1 45.511 323 148 4 52 373 54 349 3.55e-101 307
Msa0299580 AT3G05640.3 45.511 323 148 4 52 373 54 349 3.55e-101 307
Msa0299580 AT5G27930.1 46.708 319 148 5 55 372 56 353 1.36e-100 306
Msa0299580 AT5G27930.2 46.708 319 148 5 55 372 56 353 1.36e-100 306
Msa0299580 AT5G01700.2 48.318 327 142 5 52 376 39 340 2.53e-100 306
Msa0299580 AT5G01700.1 49.840 313 130 5 66 376 4 291 6.81e-100 303
Msa0299580 AT3G16800.2 41.304 322 158 4 54 373 56 348 1.23e-82 259
Msa0299580 AT3G16800.1 41.304 322 158 4 54 373 56 348 1.23e-82 259
Msa0299580 AT3G16800.3 41.304 322 158 4 54 373 56 348 1.23e-82 259
Msa0299580 AT5G27930.3 45.769 260 128 4 56 314 57 304 2.52e-82 258
Msa0299580 AT4G32950.1 40.470 383 165 10 1 380 1 323 4.06e-77 244
Msa0299580 AT5G26010.1 42.947 319 148 5 59 376 42 327 6.95e-77 244
Msa0299580 AT3G16800.4 40.426 282 138 3 93 373 1 253 4.64e-70 224
Msa0299580 AT3G16800.6 40.426 282 138 3 93 373 1 253 4.64e-70 224
Msa0299580 AT4G32950.2 40.952 315 132 9 1 312 1 264 2.52e-60 199
Msa0299580 AT3G16800.5 35.870 184 96 3 54 235 56 219 6.07e-33 125
Msa0299580 AT2G20050.2 30.205 341 166 12 73 393 125 413 3.41e-28 119
Msa0299580 AT2G20050.1 30.205 341 166 12 73 393 125 413 3.51e-28 119
Msa0299580 AT3G11410.1 32.394 284 109 13 68 327 112 336 5.04e-20 92.4
Msa0299580 AT5G59220.1 31.159 276 128 11 68 333 119 342 1.91e-19 90.9
Msa0299580 AT3G06270.1 26.820 261 136 8 73 314 70 294 2.67e-19 89.7
Msa0299580 AT1G07430.1 28.931 318 169 12 34 341 92 362 9.53e-19 89.0
Msa0299580 AT5G10740.1 33.846 195 98 6 161 352 99 265 7.01e-18 85.5
Msa0299580 AT5G10740.2 33.846 195 98 6 161 352 99 265 7.01e-18 85.5
Msa0299580 AT4G28400.3 36.508 189 93 9 163 350 82 244 8.26e-18 83.6
Msa0299580 AT4G28400.1 36.508 189 93 9 163 350 104 266 1.06e-17 84.0
Msa0299580 AT5G24940.1 33.161 193 102 6 161 352 99 265 1.43e-17 85.5
Msa0299580 AT4G31750.2 31.628 215 111 8 163 374 101 282 1.33e-16 80.9
Msa0299580 AT4G31750.1 31.628 215 111 8 163 374 101 282 1.51e-16 80.9
Msa0299580 AT4G31750.3 31.628 215 111 8 163 374 101 282 1.51e-16 80.9
Msa0299580 AT1G72770.4 32.806 253 116 10 90 332 238 446 6.36e-16 80.5
Msa0299580 AT1G72770.1 32.806 253 116 10 90 332 238 446 6.36e-16 80.5
Msa0299580 AT1G72770.3 32.806 253 116 10 90 332 238 446 6.36e-16 80.5
Msa0299580 AT2G29380.1 29.825 285 120 14 68 332 85 309 1.92e-15 78.2
Msa0299580 AT1G78200.5 33.161 193 105 6 161 352 54 223 8.15e-15 74.3
Msa0299580 AT1G78200.4 33.161 193 105 6 161 352 54 223 8.15e-15 74.3
Msa0299580 AT1G43900.1 32.338 201 108 6 149 348 177 350 1.15e-14 75.9
Msa0299580 AT2G20630.1 32.843 204 110 9 148 350 85 262 9.46e-14 72.0
Msa0299580 AT1G17550.1 29.134 254 117 9 90 328 237 442 1.28e-13 73.6
Msa0299580 AT1G17550.2 29.134 254 117 9 90 328 237 442 1.28e-13 73.6
Msa0299580 AT2G20630.2 32.843 204 110 9 148 350 85 262 1.32e-13 71.6
Msa0299580 AT4G31860.1 27.124 306 170 11 65 348 28 302 1.83e-12 68.9
Msa0299580 AT3G15260.2 32.995 197 102 9 158 350 102 272 3.96e-12 67.4
Msa0299580 AT3G15260.1 32.995 197 102 9 158 350 102 272 3.96e-12 67.4
Msa0299580 AT4G31860.3 27.835 291 157 11 65 333 28 287 4.05e-12 67.4
Msa0299580 AT1G18030.1 26.522 230 121 8 161 372 149 348 5.30e-12 67.8
Msa0299580 AT4G28400.2 36.076 158 81 9 163 318 104 243 7.78e-12 65.9
Msa0299580 AT2G34740.3 36.306 157 79 9 159 311 145 284 2.93e-11 65.1
Msa0299580 AT2G34740.2 36.306 157 79 9 159 311 163 302 3.62e-11 64.7
Msa0299580 AT2G25070.1 27.055 292 158 12 65 333 28 287 4.17e-11 64.7
Msa0299580 AT2G25070.2 27.055 292 158 12 65 333 28 287 4.17e-11 64.7

Find 133 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAAGTCTCATGCAAATT+TGG 0.195372 2_3:-54652343 Msa0299580:CDS
TTCAAGCTTTATGTCCTTCT+TGG 0.199638 2_3:+54652461 None:intergenic
TTCTATAGTGAGAGGATCTT+TGG 0.223060 2_3:-54653138 Msa0299580:five_prime_UTR
GCAAAGATGGCTCGAACTTT+TGG 0.244087 2_3:+54651131 None:intergenic
TAAATATCCAACTTCGAAAA+TGG 0.246853 2_3:-54651290 Msa0299580:CDS
ACGGCCAAACTCTTGAAAAT+TGG 0.259748 2_3:-54650930 Msa0299580:exon
GATGAGGTCAATGTGAATTC+TGG 0.264414 2_3:-54653449 Msa0299580:five_prime_UTR
AATTTAATATTTAATATATA+TGG 0.273123 2_3:+54653289 None:intergenic
TCGGATACCTCTTTGATTCT+CGG 0.283518 2_3:-54653894 Msa0299580:five_prime_UTR
TGCCTGAATGCCTGTTGCTT+TGG 0.290415 2_3:+54651176 None:intergenic
ACCTAGTAGCACGCAAAGTT+AGG 0.335302 2_3:-54652560 Msa0299580:CDS
TATGACACACTTGGCAAATC+AGG 0.348941 2_3:+54651927 None:intergenic
GTGAGAGGATCTTTGGAATC+AGG 0.358603 2_3:-54653131 Msa0299580:five_prime_UTR
TGGCCATCATCTGACTCAAC+TGG 0.360028 2_3:+54651151 None:intergenic
GATCTACCAATGTTATTTGT+CGG 0.369663 2_3:-54653913 Msa0299580:five_prime_UTR
AATTTGTTCATGGGCAATAT+CGG 0.379510 2_3:-54652026 Msa0299580:CDS
TCTAGATGTTCATTTAATCT+TGG 0.380127 2_3:-54653584 Msa0299580:five_prime_UTR
TTAGCAATGGCTAGAGCATT+TGG 0.381409 2_3:-54651716 Msa0299580:CDS
ACTCCATCTTGTCTTGAAAT+CGG 0.382346 2_3:-54652938 Msa0299580:CDS
TCAGGGTTCAAATTTGTTCA+TGG 0.382381 2_3:-54652036 Msa0299580:intron
ATCAGGATGCCATGATTGTA+TGG 0.384111 2_3:-54652769 Msa0299580:CDS
CCATTACTAAATATTCTGTT+TGG 0.386029 2_3:+54652842 None:intergenic
TTCTTGTATATTTACGCAGC+AGG 0.386376 2_3:-54652807 Msa0299580:CDS
TTTACTCAATTGACTAAGCT+TGG 0.387495 2_3:-54653104 Msa0299580:five_prime_UTR
TACACATGTCTCATTATATT+CGG 0.390786 2_3:+54651084 None:intergenic
TTATCCATTCATATAGCTTA+CGG 0.391785 2_3:-54653236 Msa0299580:five_prime_UTR
CACACAAATTTAGATATTTG+TGG 0.393174 2_3:+54653558 None:intergenic
ATCTGTGACGGTAGTGAAAC+AGG 0.395381 2_3:-54652298 Msa0299580:intron
TTGAAAATTGGTTATTCAGT+TGG 0.395918 2_3:-54650918 Msa0299580:exon
ACATGTGTAGGAGGAGGAAA+AGG 0.396810 2_3:-54651070 Msa0299580:CDS
AACCACACCCTACAAACTTC+TGG 0.399419 2_3:+54651761 None:intergenic
GGGTCGTAAGGGTGTTAATC+AGG 0.402268 2_3:-54652786 Msa0299580:CDS
CCCTAACTTTGCGTGCTACT+AGG 0.407833 2_3:+54652559 None:intergenic
CGGTGACTCAAGAGCAATCA+TGG 0.408942 2_3:-54652006 Msa0299580:CDS
CATCAAGTCATTGCTGTCCT+TGG 0.412532 2_3:+54651980 None:intergenic
CTATTAAATTAAATCAAATC+CGG 0.415351 2_3:+54653490 None:intergenic
CAAGGACAGCAATGACTTGA+TGG 0.418227 2_3:-54651979 Msa0299580:CDS
TGAATGCCTGTTGCTTTGGA+TGG 0.421566 2_3:+54651180 None:intergenic
ATCATCGGCAGCGAGGGTTC+TGG 0.421788 2_3:-54651341 Msa0299580:CDS
ATCCAAAGCAACAGGCATTC+AGG 0.423868 2_3:-54651178 Msa0299580:CDS
AGAAGCCGGTGCGTAAATTC+AGG 0.424088 2_3:+54651656 None:intergenic
CAAAACTGGTTAGGTCTAGA+AGG 0.426937 2_3:-54651001 Msa0299580:CDS
CATCAGCTGAAGATCAAAAC+TGG 0.432537 2_3:-54651015 Msa0299580:CDS
AGGATGAACCAGAAGTTTGT+AGG 0.433167 2_3:-54651769 Msa0299580:CDS
ACTAAATATTCTGTTTGGTA+AGG 0.434667 2_3:+54652847 None:intergenic
TTCATTGTTCTTGCCTCGGA+TGG 0.438125 2_3:-54651617 Msa0299580:CDS
ATGAGGTCAATGTGAATTCT+GGG 0.447942 2_3:-54653448 Msa0299580:five_prime_UTR
TTGTAATGCTTATAACAATA+CGG 0.448522 2_3:-54650886 Msa0299580:three_prime_UTR
GTGAAGTTCCTTCGCAAAGA+TGG 0.450703 2_3:+54651118 None:intergenic
AATTCACACCTTGTTGCTGT+TGG 0.452894 2_3:+54653174 None:intergenic
GCTGAAGATCAAAACTGGTT+AGG 0.453850 2_3:-54651010 Msa0299580:CDS
CAGGGTTCAAATTTGTTCAT+GGG 0.454152 2_3:-54652035 Msa0299580:CDS
CCGCAACCATCCAAAGCAAC+AGG 0.458483 2_3:-54651186 Msa0299580:CDS
TGTGTCTTCTTCTGTTCAGC+CGG 0.478288 2_3:-54653264 Msa0299580:five_prime_UTR
AGACTTCAGCTCTTTGTCCA+TGG 0.483435 2_3:+54652356 None:intergenic
CCAAACAGAATATTTAGTAA+TGG 0.485067 2_3:-54652842 Msa0299580:CDS
ATATGAATGGATAAAGAAAC+CGG 0.487229 2_3:+54653245 None:intergenic
AACCAGAAGTTTGTAGGGTG+TGG 0.487786 2_3:-54651763 Msa0299580:CDS
ATTTACGCAGCAGGGTCGTA+AGG 0.489572 2_3:-54652798 Msa0299580:CDS
GGCCGTTCTTCAGAAAATCT+AGG 0.491219 2_3:+54650947 None:intergenic
CAAGGGTAGGGTATTTGCAT+TGG 0.493438 2_3:-54651792 Msa0299580:CDS
GGGTAGGGTATTTGCATTGG+AGG 0.495563 2_3:-54651789 Msa0299580:CDS
TCAGTTCATTGTTCTTGCCT+CGG 0.500431 2_3:-54651621 Msa0299580:CDS
TGCGGTGTGTTCGATGGCCA+TGG 0.500762 2_3:-54652594 Msa0299580:CDS
TGTGTAGGAGGAGGAAAAGG+AGG 0.506060 2_3:-54651067 Msa0299580:CDS
TCTAGCTTCATTCTTAATGT+CGG 0.507918 2_3:+54650783 None:intergenic
AGCTTTCATGAAGGCATACA+AGG 0.511427 2_3:-54652379 Msa0299580:CDS
TTTGCCGTAAGCTATATGAA+TGG 0.512854 2_3:+54653232 None:intergenic
TAATTTCTCTGCTGAGGATG+AGG 0.513150 2_3:-54652421 Msa0299580:CDS
CAAGAACAATGAACTGATCT+CGG 0.513831 2_3:+54651627 None:intergenic
CCTAGTAGCACGCAAAGTTA+GGG 0.515838 2_3:-54652559 Msa0299580:CDS
CTCGCTGCCGATGATCGACT+TGG 0.523251 2_3:+54651349 None:intergenic
TTCGATGGCCATGGTCCATA+CGG 0.524180 2_3:-54652585 Msa0299580:CDS
GCTGTACCAGTGAGTTTACT+CGG 0.525049 2_3:+54650972 None:intergenic
ATCTTCTGCGGTGTGTTCGA+TGG 0.528423 2_3:-54652600 Msa0299580:CDS
GCTCTAGCCATTGCTAATCC+AGG 0.531526 2_3:+54651722 None:intergenic
AATCCAGGTGCATCATCAAA+AGG 0.541135 2_3:+54651737 None:intergenic
TTAATACTTTCTATAGTGAG+AGG 0.541580 2_3:-54653146 Msa0299580:five_prime_UTR
TGAGGTGAGTTCTATGTGGA+GGG 0.545772 2_3:-54652403 Msa0299580:CDS
AAGTCGATCATCGGCAGCGA+GGG 0.548909 2_3:-54651347 Msa0299580:CDS
GATCTCGGTCTGTGAGAAGC+CGG 0.551873 2_3:+54651642 None:intergenic
CATTATCAGTATATTAGAAG+AGG 0.552370 2_3:+54653807 None:intergenic
AAGGACATAAAGCTTGAAAG+TGG 0.554778 2_3:-54652456 Msa0299580:CDS
TATTAAATTAAATCAAATCC+GGG 0.554787 2_3:+54653491 None:intergenic
ATCAGCACCAAGTCGATCAT+CGG 0.562467 2_3:-54651356 Msa0299580:CDS
AATCCAGTTGAGTCAGATGA+TGG 0.563043 2_3:-54651154 Msa0299580:CDS
CCTGTTGCTTTGGATGGTTG+CGG 0.563383 2_3:+54651186 None:intergenic
AAGAGCAATCATGGGATCCA+AGG 0.564131 2_3:-54651997 Msa0299580:CDS
GGATGAACCAGAAGTTTGTA+GGG 0.564180 2_3:-54651768 Msa0299580:CDS
GAAATTTCTTACACCATCCG+AGG 0.565735 2_3:+54651604 None:intergenic
GCTTACTTCCCATACAATCA+TGG 0.566308 2_3:+54652760 None:intergenic
ATCGGCAGCGAGGGTTCTGG+TGG 0.567760 2_3:-54651338 Msa0299580:CDS
ATGAGGTGAGTTCTATGTGG+AGG 0.571277 2_3:-54652404 Msa0299580:CDS
TGGAATCTGCCGCACGAGAG+TGG 0.576177 2_3:-54651318 Msa0299580:CDS
AATGAGACATGTGTAGGAGG+AGG 0.580853 2_3:-54651076 Msa0299580:CDS
AGTTCGAGCCATCTTTGCGA+AGG 0.584568 2_3:-54651126 Msa0299580:CDS
TCTTGTATATTTACGCAGCA+GGG 0.584645 2_3:-54652806 Msa0299580:CDS
AATCCGATTTCAAGACAAGA+TGG 0.585814 2_3:+54652935 None:intergenic
AATTAGTTTACATTAAGCAA+AGG 0.589217 2_3:-54653327 Msa0299580:five_prime_UTR
CAATAGAAGTAATGACGGCT+CGG 0.592065 2_3:-54652963 Msa0299580:CDS
TCAGGATGCCATGATTGTAT+GGG 0.593354 2_3:-54652768 Msa0299580:CDS
GTCAATGTGAATTCTGGGGA+AGG 0.595148 2_3:-54653443 Msa0299580:five_prime_UTR
TGAGAATAATTTCTCTGCTG+AGG 0.599889 2_3:-54652427 Msa0299580:CDS
TATAATGAGACATGTGTAGG+AGG 0.600880 2_3:-54651079 Msa0299580:CDS
CGTGCTACTAGGTGACCGTA+TGG 0.603429 2_3:+54652570 None:intergenic
CTGTACCTGAATTTACGCAC+CGG 0.609120 2_3:-54651661 Msa0299580:CDS
TTTACGCAGCAGGGTCGTAA+GGG 0.610094 2_3:-54652797 Msa0299580:CDS
CATGAAGGCATACAAGGCCA+TGG 0.610791 2_3:-54652373 Msa0299580:CDS
ACAAGCAATAGAAGTAATGA+CGG 0.615043 2_3:-54652968 Msa0299580:CDS
CAGTGGAAGCACATCTGTGA+CGG 0.618387 2_3:-54652310 Msa0299580:CDS
GAGTCTGTCGATGTTGAAGA+CGG 0.621885 2_3:-54651043 Msa0299580:CDS
ACATGTCTCATTATATTCGG+AGG 0.626995 2_3:+54651087 None:intergenic
CTGTACCAGTGAGTTTACTC+GGG 0.631787 2_3:+54650973 None:intergenic
GAATATAATGAGACATGTGT+AGG 0.637435 2_3:-54651082 Msa0299580:CDS
TGATCAACCGAGAATCAAAG+AGG 0.638174 2_3:+54653887 None:intergenic
TATTTAGTAATGGAAAGAGT+CGG 0.646864 2_3:-54652832 Msa0299580:CDS
GCTAGTTTCCAACAGCAACA+AGG 0.652102 2_3:-54653182 Msa0299580:five_prime_UTR
GTGGAGGGAAGCTTTCATGA+AGG 0.654164 2_3:-54652388 Msa0299580:CDS
TCAGAAGATGCGATCTTCTG+CGG 0.654370 2_3:-54652612 Msa0299580:CDS
GGTGACTCAAGAGCAATCAT+GGG 0.657492 2_3:-54652005 Msa0299580:CDS
CAAGTCGATCATCGGCAGCG+AGG 0.659177 2_3:-54651348 Msa0299580:CDS
ATGGCTTAATCTATCCAACA+AGG 0.660593 2_3:+54653763 None:intergenic
TGTCTTGAAATCGGATTGTG+TGG 0.666044 2_3:-54652929 Msa0299580:CDS
TGTCACCCGAGTAAACTCAC+TGG 0.671131 2_3:-54650978 Msa0299580:CDS
ACATTGACCTCATCGAAATG+CGG 0.674333 2_3:+54653458 None:intergenic
CATAAAGCTTGAAAGTGGAG+AGG 0.675886 2_3:-54652451 Msa0299580:CDS
AGGATGAGGTGAGTTCTATG+TGG 0.676000 2_3:-54652407 Msa0299580:CDS
AGGTATCCGACAAATAACAT+TGG 0.677287 2_3:+54653907 None:intergenic
CTAGGTGACCGTATGGACCA+TGG 0.681676 2_3:+54652577 None:intergenic
TGATGCACCTGGATTAGCAA+TGG 0.684010 2_3:-54651729 Msa0299580:CDS
TGAGGTCAATGTGAATTCTG+GGG 0.688531 2_3:-54653447 Msa0299580:five_prime_UTR
TTTAAGTTTCCACTCTCGTG+CGG 0.690625 2_3:+54651309 None:intergenic
TCAAACTCCGCATTTCGATG+AGG 0.703059 2_3:-54653465 Msa0299580:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAATATTTAATATATA+TGG + chr2_3:54651413-54651432 None:intergenic 0.0%
!! AAAAAACATAAATTTAAACA+TGG + chr2_3:54652814-54652833 None:intergenic 10.0%
!! TCATAAATATTATTTATATG+AGG - chr2_3:54653181-54653200 Msa0299580:five_prime_UTR 10.0%
!!! AAGAAGAATTATTTTTTATT+TGG - chr2_3:54653843-54653862 Msa0299580:five_prime_UTR 10.0%
!!! ATAAATGTTTTATTCTCATT+TGG - chr2_3:54651029-54651048 Msa0299580:CDS 15.0%
!! TATTAAATTAAATCAAATCC+GGG + chr2_3:54651211-54651230 None:intergenic 15.0%
!! CTATTAAATTAAATCAAATC+CGG + chr2_3:54651212-54651231 None:intergenic 15.0%
!!! TTTTGATTTTTGTTTTCTTT+AGG - chr2_3:54652056-54652075 Msa0299580:intron 15.0%
!!! AAAAATGAAAGCAATTTTAT+CGG + chr2_3:54652174-54652193 None:intergenic 15.0%
!!! TATATGTTTTCTTTTGTATA+AGG - chr2_3:54652603-54652622 Msa0299580:CDS 15.0%
!!! ATATGTTTTCTTTTGTATAA+GGG - chr2_3:54652604-54652623 Msa0299580:CDS 15.0%
!!! AATTAGTTTACATTAAGCAA+AGG - chr2_3:54651372-54651391 Msa0299580:CDS 20.0%
!!! ATCTAAAGTGTTTTTCTTTT+TGG - chr2_3:54651680-54651699 Msa0299580:CDS 20.0%
!! AGAAAACAAAAATCAAAACT+AGG + chr2_3:54652054-54652073 None:intergenic 20.0%
!!! GATAAAATTGCTTTCATTTT+TGG - chr2_3:54652173-54652192 Msa0299580:intron 20.0%
!! AAAGAAAACATATACAGAAA+AGG + chr2_3:54652597-54652616 None:intergenic 20.0%
!! TGATGCAATAATATTCTTAT+AGG - chr2_3:54652860-54652879 Msa0299580:CDS 20.0%
!! TTGTAATGCTTATAACAATA+CGG - chr2_3:54653813-54653832 Msa0299580:intron 20.0%
! AAGAAAAAGACAGAAAGAAA+AGG + chr2_3:54650852-54650871 None:intergenic 25.0%
! CATTATCAGTATATTAGAAG+AGG + chr2_3:54650895-54650914 None:intergenic 25.0%
!! TTCTACTTAAGCAATTTTCA+TGG + chr2_3:54650958-54650977 None:intergenic 25.0%
! TCTAGATGTTCATTTAATCT+TGG - chr2_3:54651115-54651134 Msa0299580:CDS 25.0%
! CACACAAATTTAGATATTTG+TGG + chr2_3:54651144-54651163 None:intergenic 25.0%
! ATATGAATGGATAAAGAAAC+CGG + chr2_3:54651457-54651476 None:intergenic 25.0%
! TTATCCATTCATATAGCTTA+CGG - chr2_3:54651463-54651482 Msa0299580:intron 25.0%
! TTAATACTTTCTATAGTGAG+AGG - chr2_3:54651553-54651572 Msa0299580:intron 25.0%
! ACTAAATATTCTGTTTGGTA+AGG + chr2_3:54651855-54651874 None:intergenic 25.0%
! CCATTACTAAATATTCTGTT+TGG + chr2_3:54651860-54651879 None:intergenic 25.0%
! CCAAACAGAATATTTAGTAA+TGG - chr2_3:54651857-54651876 Msa0299580:intron 25.0%
!! TATTTAGTAATGGAAAGAGT+CGG - chr2_3:54651867-54651886 Msa0299580:intron 25.0%
!!! TCATTTTCTTCACTTTTTCA+GGG - chr2_3:54652646-54652665 Msa0299580:intron 25.0%
!! TGAAAGAATTAAAAAGTGCA+AGG - chr2_3:54652889-54652908 Msa0299580:CDS 25.0%
!! GAAAGAATTAAAAAGTGCAA+GGG - chr2_3:54652890-54652909 Msa0299580:CDS 25.0%
! TAAATATCCAACTTCGAAAA+TGG - chr2_3:54653409-54653428 Msa0299580:five_prime_UTR 25.0%
! TACACATGTCTCATTATATT+CGG + chr2_3:54653618-54653637 None:intergenic 25.0%
!!! ATAACCAATTTTCAAGAGTT+TGG + chr2_3:54653776-54653795 None:intergenic 25.0%
! TTGAAAATTGGTTATTCAGT+TGG - chr2_3:54653781-54653800 Msa0299580:intron 25.0%
! GATCTACCAATGTTATTTGT+CGG - chr2_3:54650786-54650805 Msa0299580:three_prime_UTR 30.0%
! ACTATTTTGTGTTACCTTGT+TGG - chr2_3:54650922-54650941 Msa0299580:exon 30.0%
!!! AAACTAGCTCCTTTTTTACT+CGG + chr2_3:54651505-54651524 None:intergenic 30.0%
TTTACTCAATTGACTAAGCT+TGG - chr2_3:54651595-54651614 Msa0299580:CDS 30.0%
!!! TCTTTTTGGAACTGAGAAAA+TGG - chr2_3:54651694-54651713 Msa0299580:CDS 30.0%
!!! CTTTTTGGAACTGAGAAAAT+GGG - chr2_3:54651695-54651714 Msa0299580:CDS 30.0%
!!! TTTTTGGAACTGAGAAAATG+GGG - chr2_3:54651696-54651715 Msa0299580:CDS 30.0%
ACAAGCAATAGAAGTAATGA+CGG - chr2_3:54651731-54651750 Msa0299580:CDS 30.0%
! AGTAAGCATGTTTCATGTTT+TGG - chr2_3:54651955-54651974 Msa0299580:CDS 30.0%
!!! AATTTGGATTGTTTTTGCAG+TGG - chr2_3:54652372-54652391 Msa0299580:CDS 30.0%
AAGATCAGCATCTATCATAT+TGG - chr2_3:54652431-54652450 Msa0299580:CDS 30.0%
TCACGAGTAATCTTGTAATT+TGG - chr2_3:54652523-54652542 Msa0299580:CDS 30.0%
ATTACGGGGTTAAAATACTA+CGG + chr2_3:54652550-54652569 None:intergenic 30.0%
!!! CTCATTTTCTTCACTTTTTC+AGG - chr2_3:54652645-54652664 Msa0299580:intron 30.0%
! AATTTGTTCATGGGCAATAT+CGG - chr2_3:54652673-54652692 Msa0299580:intron 30.0%
ATGATTTCATATGACACACT+TGG + chr2_3:54652784-54652803 None:intergenic 30.0%
! AATTAAAAAGTGCAAGGGTA+GGG - chr2_3:54652895-54652914 Msa0299580:CDS 30.0%
!!! TTGTGTGTCTATTTTTGGAT+GGG - chr2_3:54653444-54653463 Msa0299580:five_prime_UTR 30.0%
!!! TCTATTTTTGGATGGGAAAA+TGG - chr2_3:54653451-54653470 Msa0299580:five_prime_UTR 30.0%
GAATATAATGAGACATGTGT+AGG - chr2_3:54653617-54653636 Msa0299580:five_prime_UTR 30.0%
!! TTCCTAGATTTTCTGAAGAA+CGG - chr2_3:54653750-54653769 Msa0299580:five_prime_UTR 30.0%
! TCTAGCTTCATTCTTAATGT+CGG + chr2_3:54653919-54653938 None:intergenic 30.0%
AGGTATCCGACAAATAACAT+TGG + chr2_3:54650795-54650814 None:intergenic 35.0%
ATGGCTTAATCTATCCAACA+AGG + chr2_3:54650939-54650958 None:intergenic 35.0%
!!! AGTTTTAATTGCACAGTTCC+CGG - chr2_3:54651190-54651209 Msa0299580:CDS 35.0%
ATGAGGTCAATGTGAATTCT+GGG - chr2_3:54651251-54651270 Msa0299580:CDS 35.0%
TTTGCCGTAAGCTATATGAA+TGG + chr2_3:54651470-54651489 None:intergenic 35.0%
TTCTATAGTGAGAGGATCTT+TGG - chr2_3:54651561-54651580 Msa0299580:intron 35.0%
ACTCCATCTTGTCTTGAAAT+CGG - chr2_3:54651761-54651780 Msa0299580:CDS 35.0%
AATCCGATTTCAAGACAAGA+TGG + chr2_3:54651767-54651786 None:intergenic 35.0%
TTCTTGTATATTTACGCAGC+AGG - chr2_3:54651892-54651911 Msa0299580:intron 35.0%
TCTTGTATATTTACGCAGCA+GGG - chr2_3:54651893-54651912 Msa0299580:intron 35.0%
TCATTGAATGAAGACAGACT+TGG - chr2_3:54652000-54652019 Msa0299580:CDS 35.0%
! TGAAAGCAATTTTATCGGCA+AGG + chr2_3:54652169-54652188 None:intergenic 35.0%
CTTCTTGGAAAAAGCTTTAC+TGG + chr2_3:54652226-54652245 None:intergenic 35.0%
!! CAGTAAAGCTTTTTCCAAGA+AGG - chr2_3:54652224-54652243 Msa0299580:intron 35.0%
! TTCAAGCTTTATGTCCTTCT+TGG + chr2_3:54652241-54652260 None:intergenic 35.0%
AAGGACATAAAGCTTGAAAG+TGG - chr2_3:54652243-54652262 Msa0299580:intron 35.0%
TGAGAATAATTTCTCTGCTG+AGG - chr2_3:54652272-54652291 Msa0299580:intron 35.0%
TAGTTTACTGATAAGTGAGC+AGG - chr2_3:54652492-54652511 Msa0299580:CDS 35.0%
! TCAGGGTTCAAATTTGTTCA+TGG - chr2_3:54652663-54652682 Msa0299580:intron 35.0%
! CAGGGTTCAAATTTGTTCAT+GGG - chr2_3:54652664-54652683 Msa0299580:intron 35.0%
! GAATTAAAAAGTGCAAGGGT+AGG - chr2_3:54652894-54652913 Msa0299580:CDS 35.0%
! ATTTGGCGATTTTTGCTTGA+AGG - chr2_3:54653000-54653019 Msa0299580:exon 35.0%
! GATTTTTGCTTGAAGGAGTA+TGG - chr2_3:54653007-54653026 Msa0299580:exon 35.0%
CAAGAACAATGAACTGATCT+CGG + chr2_3:54653075-54653094 None:intergenic 35.0%
! TGCTGTTGTGTGTCTATTTT+TGG - chr2_3:54653439-54653458 Msa0299580:five_prime_UTR 35.0%
!!! GTTGTGTGTCTATTTTTGGA+TGG - chr2_3:54653443-54653462 Msa0299580:five_prime_UTR 35.0%
ACATGTCTCATTATATTCGG+AGG + chr2_3:54653615-54653634 None:intergenic 35.0%
TATAATGAGACATGTGTAGG+AGG - chr2_3:54653620-54653639 Msa0299580:five_prime_UTR 35.0%
TCGGATACCTCTTTGATTCT+CGG - chr2_3:54650805-54650824 Msa0299580:three_prime_UTR 40.0%
TGATCAACCGAGAATCAAAG+AGG + chr2_3:54650815-54650834 None:intergenic 40.0%
ACATTGACCTCATCGAAATG+CGG + chr2_3:54651244-54651263 None:intergenic 40.0%
GATGAGGTCAATGTGAATTC+TGG - chr2_3:54651250-54651269 Msa0299580:CDS 40.0%
TGAGGTCAATGTGAATTCTG+GGG - chr2_3:54651252-54651271 Msa0299580:CDS 40.0%
CGCATTTGACCGAGTAAAAA+AGG - chr2_3:54651493-54651512 Msa0299580:intron 40.0%
AATTCACACCTTGTTGCTGT+TGG + chr2_3:54651528-54651547 None:intergenic 40.0%
CAATAGAAGTAATGACGGCT+CGG - chr2_3:54651736-54651755 Msa0299580:CDS 40.0%
TGTCTTGAAATCGGATTGTG+TGG - chr2_3:54651770-54651789 Msa0299580:CDS 40.0%
ATCAGGATGCCATGATTGTA+TGG - chr2_3:54651930-54651949 Msa0299580:intron 40.0%
TCAGGATGCCATGATTGTAT+GGG - chr2_3:54651931-54651950 Msa0299580:intron 40.0%
GCTTACTTCCCATACAATCA+TGG + chr2_3:54651942-54651961 None:intergenic 40.0%
TGAAGACAGACTTGGAATCT+TGG - chr2_3:54652008-54652027 Msa0299580:CDS 40.0%
! TTTTGGATTCATCTGAGTCG+AGG - chr2_3:54652190-54652209 Msa0299580:intron 40.0%
CATAAAGCTTGAAAGTGGAG+AGG - chr2_3:54652248-54652267 Msa0299580:intron 40.0%
TAATTTCTCTGCTGAGGATG+AGG - chr2_3:54652278-54652297 Msa0299580:intron 40.0%
! AGCTTTCATGAAGGCATACA+AGG - chr2_3:54652320-54652339 Msa0299580:CDS 40.0%
GCTGAAGTCTCATGCAAATT+TGG - chr2_3:54652356-54652375 Msa0299580:CDS 40.0%
AACACACGCGATTTGATTAC+GGG + chr2_3:54652565-54652584 None:intergenic 40.0%
GAACACACGCGATTTGATTA+CGG + chr2_3:54652566-54652585 None:intergenic 40.0%
TATGACACACTTGGCAAATC+AGG + chr2_3:54652775-54652794 None:intergenic 40.0%
AGGATGAACCAGAAGTTTGT+AGG - chr2_3:54652930-54652949 Msa0299580:CDS 40.0%
GGATGAACCAGAAGTTTGTA+GGG - chr2_3:54652931-54652950 Msa0299580:CDS 40.0%
!!! TTACCTTTTGATGATGCACC+TGG - chr2_3:54652959-54652978 Msa0299580:CDS 40.0%
AATCCAGGTGCATCATCAAA+AGG + chr2_3:54652965-54652984 None:intergenic 40.0%
! TTAGCAATGGCTAGAGCATT+TGG - chr2_3:54652983-54653002 Msa0299580:CDS 40.0%
TCAGTTCATTGTTCTTGCCT+CGG - chr2_3:54653078-54653097 Msa0299580:five_prime_UTR 40.0%
GAAATTTCTTACACCATCCG+AGG + chr2_3:54653098-54653117 None:intergenic 40.0%
CTCAAACCTTTGTCTTCGTT+CGG - chr2_3:54653267-54653286 Msa0299580:five_prime_UTR 40.0%
! TTTAAGTTTCCACTCTCGTG+CGG + chr2_3:54653393-54653412 None:intergenic 40.0%
! CAGTCATCCATTTTCGAAGT+TGG + chr2_3:54653419-54653438 None:intergenic 40.0%
AATCCAGTTGAGTCAGATGA+TGG - chr2_3:54653545-54653564 Msa0299580:five_prime_UTR 40.0%
CATCAGCTGAAGATCAAAAC+TGG - chr2_3:54653684-54653703 Msa0299580:five_prime_UTR 40.0%
GCTGAAGATCAAAACTGGTT+AGG - chr2_3:54653689-54653708 Msa0299580:five_prime_UTR 40.0%
CAAAACTGGTTAGGTCTAGA+AGG - chr2_3:54653698-54653717 Msa0299580:five_prime_UTR 40.0%
ACGGCCAAACTCTTGAAAAT+TGG - chr2_3:54653769-54653788 Msa0299580:five_prime_UTR 40.0%
TCAAACTCCGCATTTCGATG+AGG - chr2_3:54651234-54651253 Msa0299580:CDS 45.0%
! GTCAATGTGAATTCTGGGGA+AGG - chr2_3:54651256-54651275 Msa0299580:CDS 45.0%
TGTGTCTTCTTCTGTTCAGC+CGG - chr2_3:54651435-54651454 Msa0299580:intron 45.0%
! GCTAGTTTCCAACAGCAACA+AGG - chr2_3:54651517-54651536 Msa0299580:intron 45.0%
!! GTGAGAGGATCTTTGGAATC+AGG - chr2_3:54651568-54651587 Msa0299580:intron 45.0%
TCAGAAGATGCGATCTTCTG+CGG - chr2_3:54652087-54652106 Msa0299580:intron 45.0%
ACCTAGTAGCACGCAAAGTT+AGG - chr2_3:54652139-54652158 Msa0299580:intron 45.0%
CCTAGTAGCACGCAAAGTTA+GGG - chr2_3:54652140-54652159 Msa0299580:intron 45.0%
AGGATGAGGTGAGTTCTATG+TGG - chr2_3:54652292-54652311 Msa0299580:intron 45.0%
ATGAGGTGAGTTCTATGTGG+AGG - chr2_3:54652295-54652314 Msa0299580:intron 45.0%
TGAGGTGAGTTCTATGTGGA+GGG - chr2_3:54652296-54652315 Msa0299580:intron 45.0%
AGACTTCAGCTCTTTGTCCA+TGG + chr2_3:54652346-54652365 None:intergenic 45.0%
ATCTGTGACGGTAGTGAAAC+AGG - chr2_3:54652401-54652420 Msa0299580:CDS 45.0%
ACACACGCGATTTGATTACG+GGG + chr2_3:54652564-54652583 None:intergenic 45.0%
GGTGACTCAAGAGCAATCAT+GGG - chr2_3:54652694-54652713 Msa0299580:intron 45.0%
AAGAGCAATCATGGGATCCA+AGG - chr2_3:54652702-54652721 Msa0299580:intron 45.0%
CATCAAGTCATTGCTGTCCT+TGG + chr2_3:54652722-54652741 None:intergenic 45.0%
CAAGGACAGCAATGACTTGA+TGG - chr2_3:54652720-54652739 Msa0299580:intron 45.0%
! CAAGGGTAGGGTATTTGCAT+TGG - chr2_3:54652907-54652926 Msa0299580:CDS 45.0%
AACCAGAAGTTTGTAGGGTG+TGG - chr2_3:54652936-54652955 Msa0299580:CDS 45.0%
AACCACACCCTACAAACTTC+TGG + chr2_3:54652941-54652960 None:intergenic 45.0%
!! TGATGCACCTGGATTAGCAA+TGG - chr2_3:54652970-54652989 Msa0299580:CDS 45.0%
CTGTACCTGAATTTACGCAC+CGG - chr2_3:54653038-54653057 Msa0299580:five_prime_UTR 45.0%
TTCATTGTTCTTGCCTCGGA+TGG - chr2_3:54653082-54653101 Msa0299580:five_prime_UTR 45.0%
!! GGATGTTTTGAGCAATGACG+AGG - chr2_3:54653304-54653323 Msa0299580:five_prime_UTR 45.0%
!! TGTTTTGAGCAATGACGAGG+TGG - chr2_3:54653307-54653326 Msa0299580:five_prime_UTR 45.0%
ATCAGCACCAAGTCGATCAT+CGG - chr2_3:54653343-54653362 Msa0299580:five_prime_UTR 45.0%
!! TGAATGCCTGTTGCTTTGGA+TGG + chr2_3:54653522-54653541 None:intergenic 45.0%
ATCCAAAGCAACAGGCATTC+AGG - chr2_3:54653521-54653540 Msa0299580:five_prime_UTR 45.0%
! GCAAAGATGGCTCGAACTTT+TGG + chr2_3:54653571-54653590 None:intergenic 45.0%
GTGAAGTTCCTTCGCAAAGA+TGG + chr2_3:54653584-54653603 None:intergenic 45.0%
AATGAGACATGTGTAGGAGG+AGG - chr2_3:54653623-54653642 Msa0299580:five_prime_UTR 45.0%
ACATGTGTAGGAGGAGGAAA+AGG - chr2_3:54653629-54653648 Msa0299580:five_prime_UTR 45.0%
GAGTCTGTCGATGTTGAAGA+CGG - chr2_3:54653656-54653675 Msa0299580:five_prime_UTR 45.0%
CTGTACCAGTGAGTTTACTC+GGG + chr2_3:54653729-54653748 None:intergenic 45.0%
GCTGTACCAGTGAGTTTACT+CGG + chr2_3:54653730-54653749 None:intergenic 45.0%
GGCCGTTCTTCAGAAAATCT+AGG + chr2_3:54653755-54653774 None:intergenic 45.0%
ATTTACGCAGCAGGGTCGTA+AGG - chr2_3:54651901-54651920 Msa0299580:intron 50.0%
TTTACGCAGCAGGGTCGTAA+GGG - chr2_3:54651902-54651921 Msa0299580:intron 50.0%
!! GGGTCGTAAGGGTGTTAATC+AGG - chr2_3:54651913-54651932 Msa0299580:intron 50.0%
ATCTTCTGCGGTGTGTTCGA+TGG - chr2_3:54652099-54652118 Msa0299580:intron 50.0%
TTCGATGGCCATGGTCCATA+CGG - chr2_3:54652114-54652133 Msa0299580:intron 50.0%
! CCCTAACTTTGCGTGCTACT+AGG + chr2_3:54652143-54652162 None:intergenic 50.0%
GTGGAGGGAAGCTTTCATGA+AGG - chr2_3:54652311-54652330 Msa0299580:CDS 50.0%
! CATGAAGGCATACAAGGCCA+TGG - chr2_3:54652326-54652345 Msa0299580:CDS 50.0%
! CAGTGGAAGCACATCTGTGA+CGG - chr2_3:54652389-54652408 Msa0299580:CDS 50.0%
CGGTGACTCAAGAGCAATCA+TGG - chr2_3:54652693-54652712 Msa0299580:intron 50.0%
! GGGTAGGGTATTTGCATTGG+AGG - chr2_3:54652910-54652929 Msa0299580:CDS 50.0%
GCTCTAGCCATTGCTAATCC+AGG + chr2_3:54652980-54652999 None:intergenic 50.0%
AGAAGCCGGTGCGTAAATTC+AGG + chr2_3:54653046-54653065 None:intergenic 50.0%
CAGAGACCGAACGAAGACAA+AGG + chr2_3:54653276-54653295 None:intergenic 50.0%
TCGTTCGGTCTCTGCAGATA+TGG - chr2_3:54653282-54653301 Msa0299580:five_prime_UTR 50.0%
CGTTCGGTCTCTGCAGATAT+GGG - chr2_3:54653283-54653302 Msa0299580:five_prime_UTR 50.0%
!! CCTGTTGCTTTGGATGGTTG+CGG + chr2_3:54653516-54653535 None:intergenic 50.0%
! TGCCTGAATGCCTGTTGCTT+TGG + chr2_3:54653526-54653545 None:intergenic 50.0%
TGGCCATCATCTGACTCAAC+TGG + chr2_3:54653551-54653570 None:intergenic 50.0%
AGTTCGAGCCATCTTTGCGA+AGG - chr2_3:54653573-54653592 Msa0299580:five_prime_UTR 50.0%
TGTGTAGGAGGAGGAAAAGG+AGG - chr2_3:54653632-54653651 Msa0299580:five_prime_UTR 50.0%
TGTCACCCGAGTAAACTCAC+TGG - chr2_3:54653721-54653740 Msa0299580:five_prime_UTR 50.0%
CTAGGTGACCGTATGGACCA+TGG + chr2_3:54652125-54652144 None:intergenic 55.0%
! CGTGCTACTAGGTGACCGTA+TGG + chr2_3:54652132-54652151 None:intergenic 55.0%
GATCTCGGTCTGTGAGAAGC+CGG + chr2_3:54653060-54653079 None:intergenic 55.0%
AAGTCGATCATCGGCAGCGA+GGG - chr2_3:54653352-54653371 Msa0299580:five_prime_UTR 55.0%
CCGCAACCATCCAAAGCAAC+AGG - chr2_3:54653513-54653532 Msa0299580:five_prime_UTR 55.0%
TGCGGTGTGTTCGATGGCCA+TGG - chr2_3:54652105-54652124 Msa0299580:intron 60.0%
CTCGCTGCCGATGATCGACT+TGG + chr2_3:54653353-54653372 None:intergenic 60.0%
CAAGTCGATCATCGGCAGCG+AGG - chr2_3:54653351-54653370 Msa0299580:five_prime_UTR 60.0%
ATCATCGGCAGCGAGGGTTC+TGG - chr2_3:54653358-54653377 Msa0299580:five_prime_UTR 60.0%
TGGAATCTGCCGCACGAGAG+TGG - chr2_3:54653381-54653400 Msa0299580:five_prime_UTR 60.0%
! ATCGGCAGCGAGGGTTCTGG+TGG - chr2_3:54653361-54653380 Msa0299580:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 54650779 54653942 54650779 ID=Msa0299580;Name=Msa0299580
chr2_3 mRNA 54650779 54653942 54650779 ID=Msa0299580-mRNA-1;Parent=Msa0299580;Name=Msa0299580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=910|0.8|0.83|1|0.8|0.66|6|158|480
chr2_3 exon 54650779 54651422 54650779 ID=Msa0299580-mRNA-1:exon:17461;Parent=Msa0299580-mRNA-1
chr2_3 exon 54651589 54651839 54651589 ID=Msa0299580-mRNA-1:exon:17460;Parent=Msa0299580-mRNA-1
chr2_3 exon 54651937 54652054 54651937 ID=Msa0299580-mRNA-1:exon:17459;Parent=Msa0299580-mRNA-1
chr2_3 exon 54652299 54652643 54652299 ID=Msa0299580-mRNA-1:exon:17458;Parent=Msa0299580-mRNA-1
chr2_3 exon 54652766 54653794 54652766 ID=Msa0299580-mRNA-1:exon:17457;Parent=Msa0299580-mRNA-1
chr2_3 exon 54653819 54653942 54653819 ID=Msa0299580-mRNA-1:exon:17456;Parent=Msa0299580-mRNA-1
chr2_3 five_prime_UTR 54653819 54653942 54653819 ID=Msa0299580-mRNA-1:five_prime_utr;Parent=Msa0299580-mRNA-1
chr2_3 five_prime_UTR 54653009 54653794 54653009 ID=Msa0299580-mRNA-1:five_prime_utr;Parent=Msa0299580-mRNA-1
chr2_3 CDS 54652766 54653008 54652766 ID=Msa0299580-mRNA-1:cds;Parent=Msa0299580-mRNA-1
chr2_3 CDS 54652299 54652643 54652299 ID=Msa0299580-mRNA-1:cds;Parent=Msa0299580-mRNA-1
chr2_3 CDS 54651937 54652054 54651937 ID=Msa0299580-mRNA-1:cds;Parent=Msa0299580-mRNA-1
chr2_3 CDS 54651589 54651839 54651589 ID=Msa0299580-mRNA-1:cds;Parent=Msa0299580-mRNA-1
chr2_3 CDS 54650937 54651422 54650937 ID=Msa0299580-mRNA-1:cds;Parent=Msa0299580-mRNA-1
chr2_3 three_prime_UTR 54650779 54650936 54650779 ID=Msa0299580-mRNA-1:three_prime_utr;Parent=Msa0299580-mRNA-1
Gene Sequence

>Msa0299580

ATGGGGTGTTGTGTCTCAACAAGCAATAGAAGTAATGACGGCTCGGTTACTCCATCTTGTCTTGAAATCGGATTGTGTGGTCAAAAGAAAGCAAGAAGAACATTCTCTGATCATGTTGTCTCTCTGAACAAGTTAGCATCCTTACCAAACAGAATATTTAGTAATGGAAAGAGTCGGTCTTCTTGTATATTTACGCAGCAGGGTCGTAAGGGTGTTAATCAGGATGCCATGATTGTATGGGAAGATTTTGTGTCAGAAGATGCGATCTTCTGCGGTGTGTTCGATGGCCATGGTCCATACGGTCACCTAGTAGCACGCAAAGTTAGGGATGCCTTGCCGATAAAATTGCTTTCATTTTTGGATTCATCTGAGTCGAGGCAAAATGAATCCAGTAAAGCTTTTTCCAAGAAGGACATAAAGCTTGAAAGTGGAGAGGCTGAGAATAATTTCTCTGCTGAGGATGAGGTGAGTTCTATGTGGAGGGAAGCTTTCATGAAGGCATACAAGGCCATGGACAAAGAGCTGAAGTCTCATGCAAATTTGGATTGTTTTTGCAGTGGAAGCACATCTGTGACGGTAGTGAAACAGGGTTCAAATTTGTTCATGGGCAATATCGGTGACTCAAGAGCAATCATGGGATCCAAGGACAGCAATGACTTGATGGTTGCAATTCAGCTGACAGTTGATTTAAAACCTGATTTGCCAAGAGAAGCTGAAAGAATTAAAAAGTGCAAGGGTAGGGTATTTGCATTGGAGGATGAACCAGAAGTTTGTAGGGTGTGGTTACCTTTTGATGATGCACCTGGATTAGCAATGGCTAGAGCATTTGGCGATTTTTGCTTGAAGGAGTATGGTGTGATTTCTGTACCTGAATTTACGCACCGGCTTCTCACAGACCGAGATCAGTTCATTGTTCTTGCCTCGGATGGTGTAAGAAATTTCAATTTCATATCTACTATATGGGATGTTTTGAGCAATGACGAGGTGGTAGAAATAGTATCATCAGCACCAAGTCGATCATCGGCAGCGAGGGTTCTGGTGGAATCTGCCGCACGAGAGTGGAAACTTAAATATCCAACTTCGAAAATGGATGACTGTGCTGTTGTGTGTCTATTTTTGGATGGGAAAATGGACTCAGAAGAATCTGATTGTGATGAACAATGCTATTCTTCCGCAACCATCCAAAGCAACAGGCATTCAGGCAATCCAGTTGAGTCAGATGATGGCCAAAAGTTCGAGCCATCTTTGCGAAGGAACTTCACTGTGAGAACCTCCGAATATAATGAGACATGTGTAGGAGGAGGAAAAGGAGGAGAGTCTGTCGATGTTGAAGACGGAACATCATCAGCTGAAGATCAAAACTGGTTAGGTCTAGAAGGTGTCACCCGAGTAAACTCACTGGTACAGCTTCCTAGATTTTCTGAAGAACGGCCAAACTCTTGA

Protein sequence

>Msa0299580

MGCCVSTSNRSNDGSVTPSCLEIGLCGQKKARRTFSDHVVSLNKLASLPNRIFSNGKSRSSCIFTQQGRKGVNQDAMIVWEDFVSEDAIFCGVFDGHGPYGHLVARKVRDALPIKLLSFLDSSESRQNESSKAFSKKDIKLESGEAENNFSAEDEVSSMWREAFMKAYKAMDKELKSHANLDCFCSGSTSVTVVKQGSNLFMGNIGDSRAIMGSKDSNDLMVAIQLTVDLKPDLPREAERIKKCKGRVFALEDEPEVCRVWLPFDDAPGLAMARAFGDFCLKEYGVISVPEFTHRLLTDRDQFIVLASDGVRNFNFISTIWDVLSNDEVVEIVSSAPSRSSAARVLVESAAREWKLKYPTSKMDDCAVVCLFLDGKMDSEESDCDEQCYSSATIQSNRHSGNPVESDDGQKFEPSLRRNFTVRTSEYNETCVGGGKGGESVDVEDGTSSAEDQNWLGLEGVTRVNSLVQLPRFSEERPNS*