AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0561230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561230 MtrunA17_Chr4g0051671 93.873 963 41 3 1 962 1 946 0.0 1849
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561230 AT4G20910.1 48.079 963 454 14 8 957 1 930 0.0 829
Msa0561230 AT4G20910.2 48.079 963 454 14 8 957 1 930 0.0 829
Msa0561230 AT4G20920.3 41.176 799 386 18 8 776 1 745 4.61e-175 528
Msa0561230 AT4G20920.4 41.176 799 386 18 8 776 1 745 4.61e-175 528
Msa0561230 AT4G20920.2 41.176 799 386 18 8 776 1 745 4.61e-175 528
Msa0561230 AT4G20920.5 40.551 799 375 19 8 776 1 729 5.63e-167 506
Msa0561230 AT4G20920.1 40.551 799 375 19 8 776 1 729 5.63e-167 506

Find 243 sgRNAs with CRISPR-Local

Find 567 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCATTGCAGCTTGATTT+TGG 0.099534 4_1:-60686618 Msa0561230:intron
ACTACATTGTATTCAAAATT+TGG 0.173974 4_1:+60684369 None:intergenic
CGTCCAATTCTTCTTGTTCT+TGG 0.180888 4_1:+60684322 None:intergenic
TCCTAGCATCCATTCTATTT+TGG 0.191249 4_1:+60683945 None:intergenic
CTTTATAATCAAATAATAAT+AGG 0.216926 4_1:+60683755 None:intergenic
AGAATGGATGCTAGGAAATA+AGG 0.232976 4_1:-60683938 Msa0561230:three_prime_UTR
GAAGATCAAGCTTGTCTCTT+TGG 0.252238 4_1:-60684441 Msa0561230:CDS
GTGAAATAAAGTTGCTTTCT+CGG 0.254391 4_1:-60687586 Msa0561230:CDS
CTCTGGAGGTTCTGCAACTT+TGG 0.257411 4_1:+60686805 None:intergenic
AAGATCAAGCTTGTCTCTTT+GGG 0.262347 4_1:-60684440 Msa0561230:CDS
GTAGCAGCCCTTACTATATA+TGG 0.276604 4_1:+60689095 None:intergenic
AAGCTGGATATTTAAATGTT+AGG 0.277660 4_1:-60683840 Msa0561230:three_prime_UTR
TTTCTATACAGGATGCTTCT+AGG 0.281845 4_1:-60687914 Msa0561230:intron
TGTCCAAAGCAATCAGATTC+AGG 0.283086 4_1:-60687620 Msa0561230:CDS
TTACAAGACATGTTAGTAAA+TGG 0.283885 4_1:-60687284 Msa0561230:CDS
TAACTGTTCGGTTATATTAC+AGG 0.285137 4_1:-60688508 Msa0561230:intron
TTATTTGATTATAAAGATAA+TGG 0.289715 4_1:-60683748 Msa0561230:three_prime_UTR
ATAGCCATTATAATGTAATA+TGG 0.293113 4_1:-60684068 Msa0561230:CDS
CAGACAGCAATGACAGAAAT+AGG 0.302121 4_1:+60689188 None:intergenic
TCTATAATATCTTGTGGATA+TGG 0.304654 4_1:+60689014 None:intergenic
ATTCCCATATTACATTATAA+TGG 0.306928 4_1:+60684064 None:intergenic
GCCAACGGGGCCTCTGTAAA+TGG 0.312707 4_1:-60687644 Msa0561230:CDS
GATTTACCACAAGAGTTAAC+TGG 0.321328 4_1:-60687826 Msa0561230:CDS
TTACATCTGAACAACATATC+TGG 0.321631 4_1:-60689052 Msa0561230:CDS
TATTAGTTATTCAGTATCTT+TGG 0.322059 4_1:-60687195 Msa0561230:CDS
AGATATTATAGAGTCGTTAA+TGG 0.324864 4_1:-60689003 Msa0561230:CDS
ATCCGCTCAGTGGTCACATT+CGG 0.329096 4_1:-60689250 Msa0561230:CDS
GTAGAAACAATAAGAATCTT+TGG 0.332039 4_1:+60684393 None:intergenic
TTCAACAACAACAAACCTTT+AGG 0.337261 4_1:-60692207 Msa0561230:intron
TTTGAGAGGATGACTTATAA+TGG 0.337624 4_1:+60687733 None:intergenic
GCCTGCTCCATTCTTTCCTC+TGG 0.340683 4_1:+60686788 None:intergenic
GAACAGGGACAGTACGCTTT+TGG 0.347063 4_1:-60692381 Msa0561230:five_prime_UTR
GTTCCCCTGAGGATTGTTAT+AGG 0.348614 4_1:-60687541 Msa0561230:CDS
AGTATTGATAGGTTTAGTTA+AGG 0.353379 4_1:-60683909 Msa0561230:three_prime_UTR
GTATTATAGCCTTCGGTGTA+AGG 0.357215 4_1:+60691473 None:intergenic
ATGTGGATCTGGAAGCTTGC+TGG 0.357548 4_1:-60686595 Msa0561230:CDS
AGAAGATAAGGACGGCATTA+TGG 0.360060 4_1:+60686986 None:intergenic
ACTGGAGGGGTTCCCTTCCT+AGG 0.364152 4_1:-60687808 Msa0561230:CDS
ACTTATATAGTTCTGATTGC+TGG 0.366254 4_1:-60683984 Msa0561230:three_prime_UTR
GTTGAGGCCATACGCATTCC+TGG 0.367253 4_1:-60688951 Msa0561230:CDS
ATTCTTCTTGTTCTTGGGTA+GGG 0.367654 4_1:+60684328 None:intergenic
TGGTCCTTCCATATATAGTA+AGG 0.370607 4_1:-60689103 Msa0561230:CDS
TAGAATGAAATGAATTGTTA+AGG 0.372325 4_1:+60692284 None:intergenic
GTTCTTGTCACACCAGCATC+TGG 0.379015 4_1:+60685406 None:intergenic
CAATGATTCCGTTACGGAAC+AGG 0.381093 4_1:-60692397 Msa0561230:five_prime_UTR
AGGTTGCATGGGTTTGATAT+TGG 0.381505 4_1:-60685331 Msa0561230:CDS
TACCCAAGAACAAGAAGAAT+TGG 0.381585 4_1:-60684325 Msa0561230:CDS
ATCCCTGAATCTGATTGCTT+TGG 0.384080 4_1:+60687617 None:intergenic
GTCCAATTCTTCTTGTTCTT+GGG 0.384367 4_1:+60684323 None:intergenic
TGATATTGGTACTTGTTTAG+AGG 0.385962 4_1:-60685317 Msa0561230:intron
GAATGAATGTGTATGAAATT+AGG 0.387108 4_1:+60692230 None:intergenic
AGCTTGTCTCTTTGGGGATG+TGG 0.389014 4_1:-60684433 Msa0561230:CDS
AGAATCACATGCTACTACTT+TGG 0.389905 4_1:-60686708 Msa0561230:intron
AATGTGGAGTTTAGTGGGGT+TGG 0.390171 4_1:-60684189 Msa0561230:CDS
AGCTGTGAGTAGTGCCTCTC+TGG 0.390358 4_1:+60687862 None:intergenic
TGTGGCTCCAATAGGAATAT+AGG 0.393034 4_1:-60688746 Msa0561230:intron
GCTATAATACACCAAAAGTT+TGG 0.393808 4_1:-60691460 Msa0561230:CDS
GATATCATTGCAAATGAACT+TGG 0.395132 4_1:-60688867 Msa0561230:CDS
CTCTGGTCCACTCAAATTTG+TGG 0.398261 4_1:+60684259 None:intergenic
GTGGAGTTTAGTGGGGTTGG+TGG 0.404034 4_1:-60684186 Msa0561230:CDS
TCCGCTCAGTGGTCACATTC+GGG 0.404773 4_1:-60689249 Msa0561230:CDS
TGCTTCTAGGGAAGACTCCC+GGG 0.405633 4_1:-60687901 Msa0561230:CDS
TAGAGATCCTTCAAAATGAA+TGG 0.409255 4_1:+60688634 None:intergenic
TGGTGTTGATATTTCACAAA+AGG 0.412817 4_1:-60686532 Msa0561230:CDS
GTATTGATAGGTTTAGTTAA+GGG 0.413972 4_1:-60683908 Msa0561230:three_prime_UTR
TTCTTCTTGTTCTTGGGTAG+GGG 0.415292 4_1:+60684329 None:intergenic
GAAACTTGCATGACTGTAAG+AGG 0.415750 4_1:+60684292 None:intergenic
AATTCTTCTTGTTCTTGGGT+AGG 0.417688 4_1:+60684327 None:intergenic
TTATTCAGTATCTTTGGTTG+TGG 0.422053 4_1:-60687189 Msa0561230:CDS
AGCTGGATATTTAAATGTTA+GGG 0.422077 4_1:-60683839 Msa0561230:three_prime_UTR
ACTCTTGTGGTAAATCTTGA+AGG 0.423724 4_1:+60687833 None:intergenic
CTTATATAGTTCTGATTGCT+GGG 0.427433 4_1:-60683983 Msa0561230:three_prime_UTR
TGATTCACAAGAATGCATTC+AGG 0.428117 4_1:-60688973 Msa0561230:CDS
AATGAGTTTGAGTTTGAGAT+TGG 0.429249 4_1:-60687131 Msa0561230:CDS
TAAGGGAAGGAAGTATTGAT+AGG 0.429443 4_1:-60683920 Msa0561230:three_prime_UTR
GAATGGATGCTAGGAAATAA+GGG 0.429592 4_1:-60683937 Msa0561230:three_prime_UTR
AATTATAATGTGGAGTTTAG+TGG 0.438708 4_1:-60684195 Msa0561230:CDS
TTCAGTATCTTTGGTTGTGG+AGG 0.439928 4_1:-60687186 Msa0561230:CDS
ATTATAATGTGGAGTTTAGT+GGG 0.440196 4_1:-60684194 Msa0561230:CDS
TGCTTCCTATAACAATCCTC+AGG 0.441318 4_1:+60687536 None:intergenic
CATGGACAGACACCAGAGTC+TGG 0.442267 4_1:+60687236 None:intergenic
AATGCAGGTGATTGAACATA+TGG 0.443555 4_1:-60684466 Msa0561230:intron
GGGTCAATGTTCTGATTTCA+AGG 0.444176 4_1:-60688833 Msa0561230:intron
TGCTCCATTCTTTCCTCTGG+AGG 0.447746 4_1:+60686791 None:intergenic
GCAAGGGCAAGATACTTGTC+TGG 0.448127 4_1:-60688608 Msa0561230:CDS
ACTTCGCTGGAGAAAATTGC+TGG 0.452004 4_1:-60686552 Msa0561230:CDS
AAAGAGTGGAAGACGAAAGA+GGG 0.453219 4_1:+60692309 None:intergenic
TACACTGCATTGCATAAAGA+TGG 0.458498 4_1:+60687339 None:intergenic
CAACCAGTGGGCATCTGACT+TGG 0.460111 4_1:-60684229 Msa0561230:CDS
CATACGCATTCCTGGTTCAA+TGG 0.462240 4_1:-60688943 Msa0561230:CDS
GTTCATTTGCAATGATATCA+AGG 0.464150 4_1:+60688871 None:intergenic
CAATTACAATCTCTCTGAAA+AGG 0.464973 4_1:+60687381 None:intergenic
GAGGTTCAGACAGGCGATGC+TGG 0.468726 4_1:+60687762 None:intergenic
TCTTCTTGTTCTTGGGTAGG+GGG 0.468837 4_1:+60684330 None:intergenic
TCGTGTTGAAATAAGCATAC+TGG 0.468944 4_1:+60687054 None:intergenic
CCACTGGTTGAACTGTTCTC+TGG 0.472971 4_1:+60684242 None:intergenic
AATCATTGCTGCTACTAACT+TGG 0.473795 4_1:+60692412 None:intergenic
ATGTGATTGAATGTGCCAAC+GGG 0.477723 4_1:-60687658 Msa0561230:CDS
ACAAGAATGCATTCAGGTTG+AGG 0.478281 4_1:-60688967 Msa0561230:CDS
GTCACATTCGGGCTAGTTTG+AGG 0.478959 4_1:-60689238 Msa0561230:CDS
TTCTATACAGGATGCTTCTA+GGG 0.481021 4_1:-60687913 Msa0561230:intron
GACTGCTGATCTTACTCCTC+AGG 0.481482 4_1:-60690250 Msa0561230:CDS
AACGGATTTGACTCCACCTC+AGG 0.481788 4_1:+60689128 None:intergenic
TTTAAACTTCATGTCACCCT+AGG 0.482852 4_1:+60683810 None:intergenic
TAGCCATTATAATGTAATAT+GGG 0.483058 4_1:-60684067 Msa0561230:CDS
CTTGTCACAACTGTAAGTTC+TGG 0.483370 4_1:+60691325 None:intergenic
GTCTCATAGAGCCGTTCAAA+AGG 0.485529 4_1:+60687440 None:intergenic
ATGCTTCTAGGGAAGACTCC+CGG 0.486091 4_1:-60687902 Msa0561230:CDS
AATGAACTTGGGTTAGAAGA+TGG 0.487425 4_1:-60688855 Msa0561230:CDS
GTCTCTCAAAATGAATGTCC+AGG 0.487786 4_1:-60691400 Msa0561230:CDS
TATCTATATCAGTATGCGTC+TGG 0.487812 4_1:+60684088 None:intergenic
GAACGGCTCTATGAGACTGC+AGG 0.489975 4_1:-60687434 Msa0561230:CDS
TCCACTCGTTGCTTCGAAAG+TGG 0.491008 4_1:+60686752 None:intergenic
AAAAGAGTGGAAGACGAAAG+AGG 0.491175 4_1:+60692308 None:intergenic
AGAAGACAACCAAAATAGAA+TGG 0.492848 4_1:-60683954 Msa0561230:three_prime_UTR
TCAGTATCTTTGGTTGTGGA+GGG 0.493622 4_1:-60687185 Msa0561230:CDS
CATGACTTTGATGATTCAGT+TGG 0.494187 4_1:+60687707 None:intergenic
CCTCATTGAAACTTCTATCA+TGG 0.495677 4_1:-60687493 Msa0561230:CDS
GGTGTTGATATTTCACAAAA+GGG 0.495830 4_1:-60686531 Msa0561230:CDS
AAATGTTAGGGTCTTCCCCT+AGG 0.497607 4_1:-60683827 Msa0561230:three_prime_UTR
TATAGAGTCGTTAATGGAAG+AGG 0.498379 4_1:-60688997 Msa0561230:CDS
ATAGCCTTCGGTGTAAGGGC+TGG 0.499378 4_1:+60691478 None:intergenic
TGCTCGACAATCATATCTAC+TGG 0.502229 4_1:-60688690 Msa0561230:CDS
ATGAGTTTGAGTTTGAGATT+GGG 0.503837 4_1:-60687130 Msa0561230:CDS
TTTGAGTTTGAGATTGGGGT+TGG 0.504481 4_1:-60687125 Msa0561230:CDS
TCAGATATAAGAAACTGTAT+AGG 0.505367 4_1:+60689275 None:intergenic
GTTTGCAGCTTAAAGATTGA+AGG 0.507154 4_1:-60687260 Msa0561230:CDS
ATGAACTTGGGTTAGAAGAT+GGG 0.510409 4_1:-60688854 Msa0561230:CDS
GGATAATTTGTAAATTCCCC+CGG 0.513841 4_1:+60687883 None:intergenic
TCTACGAGGATGTAACTGTT+CGG 0.516452 4_1:-60688520 Msa0561230:CDS
ATAAAGATGGCCATTCTGAA+TGG 0.516494 4_1:+60687352 None:intergenic
AAATGCTTGCTATGTGGTAG+AGG 0.517443 4_1:-60691434 Msa0561230:CDS
TTGCTGTGTTCAAAAGAGAA+TGG 0.518521 4_1:-60684128 Msa0561230:CDS
GGGTCTTACACGGGCTGCAA+AGG 0.518931 4_1:-60686511 Msa0561230:intron
TCCAGAGGAAAGAATGGAGC+AGG 0.519203 4_1:-60686789 Msa0561230:CDS
GCTAAATTACACAACTTCGC+TGG 0.527947 4_1:-60686565 Msa0561230:CDS
TGAGTTTGAGTTTGAGATTG+GGG 0.529855 4_1:-60687129 Msa0561230:CDS
GAAACTGTATAGGTGATGAA+TGG 0.530893 4_1:+60689285 None:intergenic
TGTAATGAATTTGCACACAT+TGG 0.532539 4_1:+60687302 None:intergenic
TTAAACTTCATGTCACCCTA+GGG 0.533301 4_1:+60683811 None:intergenic
AATATCAAACCCATGCAACC+TGG 0.534074 4_1:+60685333 None:intergenic
CTGGAGGGGTTCCCTTCCTA+GGG 0.534132 4_1:-60687807 Msa0561230:CDS
ATATCATTGCAAATGAACTT+GGG 0.536376 4_1:-60688866 Msa0561230:CDS
TTAGATGCAAATCCAGATGC+TGG 0.537038 4_1:-60685418 Msa0561230:CDS
AGAGCAATCTGCTGCGGAGA+TGG 0.537240 4_1:-60691278 Msa0561230:CDS
TAGCAGCAATGATTCCGTTA+CGG 0.538804 4_1:-60692403 Msa0561230:five_prime_UTR
ATTATAATGTAATATGGGAA+TGG 0.539053 4_1:-60684062 Msa0561230:CDS
TACAAAGAATATCCCTAGGA+AGG 0.539793 4_1:+60687795 None:intergenic
TTGAAGGATCTCTAAATGCA+AGG 0.539876 4_1:-60688625 Msa0561230:CDS
AAGTAACTCACTAGAAGATA+AGG 0.540577 4_1:+60686974 None:intergenic
GTTTAAAAGAATACACATGA+TGG 0.541342 4_1:-60683794 Msa0561230:three_prime_UTR
TGCTGTGATTTCATTCATTG+AGG 0.544473 4_1:-60687102 Msa0561230:CDS
AACGACTCTATAATATCTTG+TGG 0.544982 4_1:+60689008 None:intergenic
GTCCAAAGCAATCAGATTCA+GGG 0.545820 4_1:-60687619 Msa0561230:CDS
TCGAGCAGCAAAGAACAGTC+TGG 0.546354 4_1:+60688706 None:intergenic
ACTCGTTGCTTCGAAAGTGG+AGG 0.548386 4_1:+60686755 None:intergenic
AAGATTGAAGGTCCAGACTC+TGG 0.551436 4_1:-60687248 Msa0561230:CDS
AATGTTAGGGTCTTCCCCTA+GGG 0.552157 4_1:-60683826 Msa0561230:three_prime_UTR
ATAGAGTCGTTAATGGAAGA+GGG 0.553839 4_1:-60688996 Msa0561230:CDS
GGATAGAGTCTGAAATTGCT+AGG 0.555935 4_1:-60683887 Msa0561230:three_prime_UTR
TGAAGGATCTCTAAATGCAA+GGG 0.558644 4_1:-60688624 Msa0561230:CDS
AAATGTTCTGAGCTTTCTCA+TGG 0.559344 4_1:-60691536 Msa0561230:exon
TATTATAGCCTTCGGTGTAA+GGG 0.559881 4_1:+60691474 None:intergenic
GGTCCTTCCATATATAGTAA+GGG 0.560300 4_1:-60689102 Msa0561230:CDS
CAGCCAAGTCAGATGCCCAC+TGG 0.560908 4_1:+60684226 None:intergenic
TATTTCATACTCCACACAGC+AGG 0.561668 4_1:+60686835 None:intergenic
TCCATTTACAGAGGCCCCGT+TGG 0.563920 4_1:+60687643 None:intergenic
ACCACAAGAGTTAACTGGAG+GGG 0.564091 4_1:-60687821 Msa0561230:CDS
GCAATCTGTGAAGCAAAACC+TGG 0.572230 4_1:+60684147 None:intergenic
CATTGAACCAGGAATGCGTA+TGG 0.572396 4_1:+60688944 None:intergenic
ACCCCTCCAGTTAACTCTTG+TGG 0.573297 4_1:+60687820 None:intergenic
TGTGGTAGAGGAAGTGAAAG+AGG 0.575307 4_1:-60691422 Msa0561230:CDS
TTGTCTGGGCAAGATATAGT+TGG 0.579218 4_1:-60688593 Msa0561230:CDS
GTTGTGATGCAGATGTCTGT+TGG 0.579624 4_1:-60687077 Msa0561230:CDS
TTTCACAAAAGGGTCTTACA+CGG 0.579841 4_1:-60686521 Msa0561230:CDS
AGAACCTCCAGAGGAAAGAA+TGG 0.579935 4_1:-60686795 Msa0561230:CDS
TCTGGTGTCTGTCCATGCAA+TGG 0.586141 4_1:-60687230 Msa0561230:CDS
TGGAAAAGAGAGGTTCAGAC+AGG 0.589880 4_1:+60687753 None:intergenic
AAGAACAAGAAGAATTGGAC+GGG 0.591882 4_1:-60684320 Msa0561230:CDS
GTACTGTCCCTGTTCCGTAA+CGG 0.592334 4_1:+60692389 None:intergenic
CTCGTTGCTTCGAAAGTGGA+GGG 0.592685 4_1:+60686756 None:intergenic
TGTGATTTCATTCATTGAGG+AGG 0.593480 4_1:-60687099 Msa0561230:CDS
GACAATCATATCTACTGGAT+CGG 0.594881 4_1:-60688685 Msa0561230:CDS
GTCTGAGGAATGCTTAACCC+TGG 0.596255 4_1:+60691382 None:intergenic
TTATAATGTGGAGTTTAGTG+GGG 0.596456 4_1:-60684193 Msa0561230:CDS
CAAGGTAAAGATCCATTGCA+TGG 0.596851 4_1:+60687218 None:intergenic
AAAGTTGCTTTCTCGGTGTG+CGG 0.598256 4_1:-60687579 Msa0561230:CDS
TAAAGAGATGGCCTCGTCTG+AGG 0.598998 4_1:+60691367 None:intergenic
ATTGGTCAATCCATTCAGAA+TGG 0.601077 4_1:-60687362 Msa0561230:CDS
CTGGAAGCTGCAGTGTGCAA+CGG 0.601473 4_1:+60691344 None:intergenic
AATGATTCCGTTACGGAACA+GGG 0.602166 4_1:-60692396 Msa0561230:five_prime_UTR
ACCAAAATAGAATGGATGCT+AGG 0.603967 4_1:-60683946 Msa0561230:three_prime_UTR
GATGCAATCTTAGCATGCAT+CGG 0.605209 4_1:-60688569 Msa0561230:CDS
AAGTCAGTTATTCTTTACGA+AGG 0.605710 4_1:-60685376 Msa0561230:CDS
TGAACTTGGGTTAGAAGATG+GGG 0.608969 4_1:-60688853 Msa0561230:CDS
CAAGGGCAAGATACTTGTCT+GGG 0.609993 4_1:-60688607 Msa0561230:CDS
TGCGGAGATGGCTATAGAGA+AGG 0.612624 4_1:-60691266 Msa0561230:intron
ACAAAGAATATCCCTAGGAA+GGG 0.615809 4_1:+60687796 None:intergenic
CAAGAACAAGAAGAATTGGA+CGG 0.620185 4_1:-60684321 Msa0561230:CDS
TTCACAAAAGGGTCTTACAC+GGG 0.620229 4_1:-60686520 Msa0561230:CDS
AAACTTTCTTGTGCATCCTG+AGG 0.621220 4_1:+60690234 None:intergenic
TCCACTTTCGAAGCAACGAG+TGG 0.622786 4_1:-60686753 Msa0561230:CDS
CAGAACTTACAGTTGTGACA+AGG 0.625508 4_1:-60691324 Msa0561230:CDS
ATAATGACCACAAATTTGAG+TGG 0.625955 4_1:-60684266 Msa0561230:CDS
GGATGCAGAGCAATCTGCTG+CGG 0.627574 4_1:-60691284 Msa0561230:CDS
AAAACCAGCCCTTACACCGA+AGG 0.628957 4_1:-60691482 Msa0561230:CDS
GCTTCTAGGGAAGACTCCCG+GGG 0.629224 4_1:-60687900 Msa0561230:CDS
AAACTTGCATGACTGTAAGA+GGG 0.629499 4_1:+60684293 None:intergenic
GGGCATCTGACTTGGCTGCA+CGG 0.629721 4_1:-60684221 Msa0561230:CDS
TCTCTCAAAATGAATGTCCA+GGG 0.631429 4_1:-60691399 Msa0561230:CDS
GCTTCCTATAACAATCCTCA+GGG 0.632807 4_1:+60687537 None:intergenic
AGGACGAAGAGCGATCATTG+TGG 0.633070 4_1:-60689218 Msa0561230:CDS
CTTTGGACATCCATTTACAG+AGG 0.634735 4_1:+60687634 None:intergenic
GATACTGAATAACTAATACA+AGG 0.635441 4_1:+60687200 None:intergenic
CAGCCCTTACTATATATGGA+AGG 0.636193 4_1:+60689099 None:intergenic
GGATGCTAGGAAATAAGGGA+AGG 0.640077 4_1:-60683933 Msa0561230:three_prime_UTR
AACATACAAAGAATATCCCT+AGG 0.642294 4_1:+60687791 None:intergenic
AGATCAAGCTTGTCTCTTTG+GGG 0.645589 4_1:-60684439 Msa0561230:CDS
CAAAGTTGCAGAACCTCCAG+AGG 0.647199 4_1:-60686804 Msa0561230:CDS
AACGGCTCTATGAGACTGCA+GGG 0.648196 4_1:-60687433 Msa0561230:CDS
AGTGTGCAACGGTAAAGAGA+TGG 0.648687 4_1:+60691355 None:intergenic
GTGTAAATGTATTAATCCTG+AGG 0.650161 4_1:-60689144 Msa0561230:CDS
TGAAATTGCTAGGATATATG+TGG 0.651856 4_1:-60683877 Msa0561230:three_prime_UTR
CAGAGAACAGTTCAACCAGT+GGG 0.653322 4_1:-60684241 Msa0561230:CDS
ATATCTGATCATCCGCTCAG+TGG 0.657249 4_1:-60689260 Msa0561230:CDS
TGACTTATAATGGAAAAGAG+AGG 0.658235 4_1:+60687743 None:intergenic
GGCAACAAAAGAACGTCCTG+TGG 0.659882 4_1:-60691515 Msa0561230:CDS
TACCACAAGAGTTAACTGGA+GGG 0.660610 4_1:-60687822 Msa0561230:CDS
TAAATGTATTAATCCTGAGG+TGG 0.668210 4_1:-60689141 Msa0561230:CDS
TTACCACAAGAGTTAACTGG+AGG 0.668917 4_1:-60687823 Msa0561230:CDS
GATGTGATTGAATGTGCCAA+CGG 0.669639 4_1:-60687659 Msa0561230:CDS
TGCACGGCACAATTATAATG+TGG 0.686062 4_1:-60684205 Msa0561230:CDS
GGTTAAGCATTCCTCAGACG+AGG 0.687251 4_1:-60691378 Msa0561230:CDS
TAGCATGCATCGGATATACA+CGG 0.687540 4_1:-60688559 Msa0561230:CDS
AACTCACTAGAAGATAAGGA+CGG 0.690279 4_1:+60686978 None:intergenic
CCATGATAGAAGTTTCAATG+AGG 0.694184 4_1:+60687493 None:intergenic
AATTTACAAATTATCCAGAG+AGG 0.695325 4_1:-60687876 Msa0561230:CDS
TAAACTTCATGTCACCCTAG+GGG 0.704706 4_1:+60683812 None:intergenic
CCAGAGAACAGTTCAACCAG+TGG 0.708997 4_1:-60684242 Msa0561230:CDS
GCCCGAATGTGACCACTGAG+CGG 0.712193 4_1:+60689248 None:intergenic
CTTCCTATAACAATCCTCAG+GGG 0.761413 4_1:+60687538 None:intergenic
TGTGATTGAATGTGCCAACG+GGG 0.767832 4_1:-60687657 Msa0561230:CDS
CTTCTAGGGAAGACTCCCGG+GGG 0.792503 4_1:-60687899 Msa0561230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATCATTAGAAAATTTTAA+TGG + chr4_1:60685556-60685575 None:intergenic 10.0%
!!! TTATGAAAATAAAGTATTTT+AGG - chr4_1:60686037-60686056 Msa0561230:intron 10.0%
!!! AAAATGAAGTATTATTTTTT+TGG - chr4_1:60686793-60686812 Msa0561230:CDS 10.0%
!!! ATTTTTTTATTGAATGATAA+AGG - chr4_1:60689887-60689906 Msa0561230:intron 10.0%
!! ATTATATAAGCAATTTATAT+CGG + chr4_1:60691686-60691705 None:intergenic 10.0%
!! CTTTATAATCAAATAATAAT+AGG + chr4_1:60692420-60692439 None:intergenic 10.0%
!! TTATTTGATTATAAAGATAA+TGG - chr4_1:60692424-60692443 Msa0561230:five_prime_UTR 10.0%
!!! TTTTTCATTTCTATGTTTTA+GGG - chr4_1:60684198-60684217 Msa0561230:CDS 15.0%
!! CATTAACTAATTAATTACAA+GGG + chr4_1:60684435-60684454 None:intergenic 15.0%
!! TCATTAACTAATTAATTACA+AGG + chr4_1:60684436-60684455 None:intergenic 15.0%
!!! ATGATTTTTGTTTTTGTTTT+TGG - chr4_1:60685569-60685588 Msa0561230:intron 15.0%
!!! TGATTTTTGTTTTTGTTTTT+GGG - chr4_1:60685570-60685589 Msa0561230:intron 15.0%
!!! ACTATATATTTTAAATACAG+AGG - chr4_1:60685667-60685686 Msa0561230:intron 15.0%
!! ATAAATTGTTACTGTATAAT+CGG + chr4_1:60685719-60685738 None:intergenic 15.0%
!! TTAAAAAATAATATGCAGAT+AGG + chr4_1:60685757-60685776 None:intergenic 15.0%
!!! AACTGAAGTATTTTTATTTT+GGG - chr4_1:60687819-60687838 Msa0561230:CDS 15.0%
!! AAAACTTTAATTATTTGACT+AGG - chr4_1:60688033-60688052 Msa0561230:intron 15.0%
!!! TTTTTTTAAGTAGAGTAATT+AGG - chr4_1:60689722-60689741 Msa0561230:intron 15.0%
!!! TTTTTTAAGTAGAGTAATTA+GGG - chr4_1:60689723-60689742 Msa0561230:intron 15.0%
!!! TAATAATATTTGTTAACGTT+TGG - chr4_1:60690232-60690251 Msa0561230:CDS 15.0%
!!! TTTCTATTTTCAAAAGTTAT+GGG + chr4_1:60690387-60690406 None:intergenic 15.0%
!!! TTTTCTATTTTCAAAAGTTA+TGG + chr4_1:60690388-60690407 None:intergenic 15.0%
!! TTTGAAAATAGAAAAGTAAT+TGG - chr4_1:60690393-60690412 Msa0561230:intron 15.0%
!! TTAAAGTAATGAATTTATGT+TGG - chr4_1:60690550-60690569 Msa0561230:intron 15.0%
!! ACAATAATAGGAATATAAAA+TGG + chr4_1:60690892-60690911 None:intergenic 15.0%
!! TAGAATGAAATGAATTGTTA+AGG + chr4_1:60683891-60683910 None:intergenic 20.0%
!!! GTTTTTCATTTCTATGTTTT+AGG - chr4_1:60684197-60684216 Msa0561230:CDS 20.0%
!! TTACATGTTCATTTCTTTAT+TGG - chr4_1:60685010-60685029 Msa0561230:intron 20.0%
!! TTACATAACTTATAATGCTA+TGG - chr4_1:60685276-60685295 Msa0561230:intron 20.0%
!!! GATTTTTGTTTTTGTTTTTG+GGG - chr4_1:60685571-60685590 Msa0561230:intron 20.0%
!!! ATATTTTAAATACAGAGGAT+AGG - chr4_1:60685672-60685691 Msa0561230:intron 20.0%
!!! TACTTTTTCTGAAAAGATAT+AGG + chr4_1:60685978-60685997 None:intergenic 20.0%
!!! TATATCTTTTCAGAAAAAGT+AGG - chr4_1:60685977-60685996 Msa0561230:intron 20.0%
!!! TTATTTTCATAACTGAAAGT+AGG + chr4_1:60686029-60686048 None:intergenic 20.0%
!! TAGAAATAGTTTATGATAGT+TGG - chr4_1:60686158-60686177 Msa0561230:intron 20.0%
!! AAACACAACAAAATGATTTA+GGG + chr4_1:60686297-60686316 None:intergenic 20.0%
!! TAAACACAACAAAATGATTT+AGG + chr4_1:60686298-60686317 None:intergenic 20.0%
!! GTTAGGAAAAAAAAATCATA+AGG + chr4_1:60686373-60686392 None:intergenic 20.0%
!! TTGAAATTGTAATAGTACAA+TGG - chr4_1:60687709-60687728 Msa0561230:CDS 20.0%
!! CAAAATAAAAATACTTCAGT+TGG + chr4_1:60687820-60687839 None:intergenic 20.0%
!!! CAACTGAAGTATTTTTATTT+TGG - chr4_1:60687818-60687837 Msa0561230:CDS 20.0%
!! TTAAATTATGACGAGTTAAA+AGG + chr4_1:60687893-60687912 None:intergenic 20.0%
!! ATCTATTAAATAATTTCTCC+AGG - chr4_1:60687918-60687937 Msa0561230:intron 20.0%
!! ACTCATTTAAAAGAATTCAA+TGG + chr4_1:60688151-60688170 None:intergenic 20.0%
!! TATTAGTTATTCAGTATCTT+TGG - chr4_1:60688977-60688996 Msa0561230:CDS 20.0%
!!! TTTATATTCTTATTTTGCAG+AGG - chr4_1:60689314-60689333 Msa0561230:intron 20.0%
!! ATATTCTATTATAAAAGGGA+GGG + chr4_1:60690062-60690081 None:intergenic 20.0%
!! AATATTCTATTATAAAAGGG+AGG + chr4_1:60690063-60690082 None:intergenic 20.0%
!! GGGAATATTCTATTATAAAA+GGG + chr4_1:60690066-60690085 None:intergenic 20.0%
!! AGGGAATATTCTATTATAAA+AGG + chr4_1:60690067-60690086 None:intergenic 20.0%
!! AATATGAAGTCAACAATAAT+AGG + chr4_1:60690904-60690923 None:intergenic 20.0%
!! GAACTAATATATCTTGATTT+AGG + chr4_1:60690966-60690985 None:intergenic 20.0%
!! TTCCATATTTGCAATTTAAA+CGG + chr4_1:60691199-60691218 None:intergenic 20.0%
!!! GTTTCATGAAAATTTTAGTA+AGG - chr4_1:60691221-60691240 Msa0561230:intron 20.0%
!! TTTAAACGTGTTAAAATGAA+TGG + chr4_1:60691301-60691320 None:intergenic 20.0%
!! TTAACACGTTTAAATACTTT+AGG - chr4_1:60691307-60691326 Msa0561230:CDS 20.0%
!! AATTGCTTATATAATAATGC+AGG - chr4_1:60691691-60691710 Msa0561230:intron 20.0%
!! ACTACATTGTATTCAAAATT+TGG + chr4_1:60691806-60691825 None:intergenic 20.0%
!! ATAGCCATTATAATGTAATA+TGG - chr4_1:60692104-60692123 Msa0561230:intron 20.0%
!! TAGCCATTATAATGTAATAT+GGG - chr4_1:60692105-60692124 Msa0561230:intron 20.0%
!! ATTCCCATATTACATTATAA+TGG + chr4_1:60692111-60692130 None:intergenic 20.0%
!! ATTATAATGTAATATGGGAA+TGG - chr4_1:60692110-60692129 Msa0561230:intron 20.0%
! GAATGAATGTGTATGAAATT+AGG + chr4_1:60683945-60683964 None:intergenic 25.0%
! AGAAATTGTTGCAAAATTTC+TGG - chr4_1:60684256-60684275 Msa0561230:CDS 25.0%
!!! TTTTGGCTGATATTGTTTTA+TGG - chr4_1:60684591-60684610 Msa0561230:intron 25.0%
!! AAGCATTTTTACCAAACTTT+TGG + chr4_1:60684726-60684745 None:intergenic 25.0%
! AAGGACATTTAAGAAAAAGA+AGG - chr4_1:60684867-60684886 Msa0561230:intron 25.0%
! GAAATGAACATGTAAGTAAA+AGG + chr4_1:60685005-60685024 None:intergenic 25.0%
! TATTTATAGTTACCAAGAAG+TGG - chr4_1:60685044-60685063 Msa0561230:intron 25.0%
! GAACTGATAAAATACTTACT+CGG - chr4_1:60685074-60685093 Msa0561230:intron 25.0%
! TTAACATATAAGTGTGTGTT+TGG + chr4_1:60685208-60685227 None:intergenic 25.0%
! ATATTTGACAATCCTTTGTT+GGG + chr4_1:60685483-60685502 None:intergenic 25.0%
! AATATTTGACAATCCTTTGT+TGG + chr4_1:60685484-60685503 None:intergenic 25.0%
! ATTGTCAAATATTGATCAGA+TGG - chr4_1:60685491-60685510 Msa0561230:intron 25.0%
! TTGTCAAATATTGATCAGAT+GGG - chr4_1:60685492-60685511 Msa0561230:intron 25.0%
!!! TTAGAGGCTTTTTTTAATGT+AGG - chr4_1:60685609-60685628 Msa0561230:intron 25.0%
! ACACCTCTTATTACATAAAA+GGG + chr4_1:60686074-60686093 None:intergenic 25.0%
! AACACCTCTTATTACATAAA+AGG + chr4_1:60686075-60686094 None:intergenic 25.0%
!!! TTTATGTAATAAGAGGTGTT+TGG - chr4_1:60686075-60686094 Msa0561230:intron 25.0%
! GGAAAAAAAAATCATAAGGA+TGG + chr4_1:60686369-60686388 None:intergenic 25.0%
!!! GCAAATAATTCTTTTAGAAC+TGG - chr4_1:60686617-60686636 Msa0561230:intron 25.0%
! GTCATATCTTACTAAAATAC+AGG + chr4_1:60686731-60686750 None:intergenic 25.0%
! TCAGATATAAGAAACTGTAT+AGG + chr4_1:60686900-60686919 None:intergenic 25.0%
! TCTATAATATCTTGTGGATA+TGG + chr4_1:60687161-60687180 None:intergenic 25.0%
! AGATATTATAGAGTCGTTAA+TGG - chr4_1:60687169-60687188 Msa0561230:CDS 25.0%
! ATATCATTGCAAATGAACTT+GGG - chr4_1:60687306-60687325 Msa0561230:CDS 25.0%
! TAACTTATTCTTGATCTTTG+TGG - chr4_1:60687408-60687427 Msa0561230:CDS 25.0%
!! AAAGAAACCATTCATTTTGA+AGG - chr4_1:60687531-60687550 Msa0561230:CDS 25.0%
! TCAACCTTATATTACATTCT+TGG - chr4_1:60687732-60687751 Msa0561230:CDS 25.0%
! TTAGCCAAGAATGTAATATA+AGG + chr4_1:60687739-60687758 None:intergenic 25.0%
!! AAACTTAATACTTGGTGAAA+AGG - chr4_1:60687757-60687776 Msa0561230:CDS 25.0%
!!! GCATTTTTGCTTTATTATTG+CGG - chr4_1:60687794-60687813 Msa0561230:CDS 25.0%
!!! AATTTCTCCAGGTTTTAATT+AGG - chr4_1:60687929-60687948 Msa0561230:intron 25.0%
! ACTTTAATTATTTGACTAGG+AGG - chr4_1:60688036-60688055 Msa0561230:intron 25.0%
!!! TGAGTATTTGTCTTTTTTGT+TGG - chr4_1:60688166-60688185 Msa0561230:intron 25.0%
! AATTTACAAATTATCCAGAG+AGG - chr4_1:60688296-60688315 Msa0561230:intron 25.0%
!! ATCATCAAAGTCATGTTTTA+AGG - chr4_1:60688473-60688492 Msa0561230:intron 25.0%
! TTACAAGACATGTTAGTAAA+TGG - chr4_1:60688888-60688907 Msa0561230:CDS 25.0%
! GATACTGAATAACTAATACA+AGG + chr4_1:60688975-60688994 None:intergenic 25.0%
! TAAATTGCAAATTGTGTTGA+TGG - chr4_1:60689290-60689309 Msa0561230:CDS 25.0%
!!! TACAATGCAAATTTTGAGAT+AGG + chr4_1:60689701-60689720 None:intergenic 25.0%
!!! AAAAAGTGTCTTCTATAGTT+TGG - chr4_1:60689768-60689787 Msa0561230:intron 25.0%
!! AGTTTGGAATATATAATACC+AGG - chr4_1:60689784-60689803 Msa0561230:intron 25.0%
!! GTTTGGAATATATAATACCA+GGG - chr4_1:60689785-60689804 Msa0561230:intron 25.0%
! ATAGAAAAGAAAGGATAAAC+CGG - chr4_1:60689940-60689959 Msa0561230:intron 25.0%
! TATTCTATTATAAAAGGGAG+GGG + chr4_1:60690061-60690080 None:intergenic 25.0%
! ATATCTGCATCTGTTAAATA+AGG + chr4_1:60690459-60690478 None:intergenic 25.0%
!!! CAATTACAAATTTTGATTCC+AGG - chr4_1:60690821-60690840 Msa0561230:intron 25.0%
!!! TGTTGACTTCATTTTTGATA+TGG - chr4_1:60690935-60690954 Msa0561230:intron 25.0%
! ATAAAATCATCTATGATGCA+TGG - chr4_1:60690998-60691017 Msa0561230:intron 25.0%
! CATATGATAATTAAGTTCAC+TGG - chr4_1:60691059-60691078 Msa0561230:intron 25.0%
! TTCCGTTTAAATTGCAAATA+TGG - chr4_1:60691194-60691213 Msa0561230:intron 25.0%
! AATACTTTAGGCTTAAAAAC+CGG - chr4_1:60691319-60691338 Msa0561230:CDS 25.0%
!! ACTTCTACATTTTTATCACT+TGG - chr4_1:60691504-60691523 Msa0561230:CDS 25.0%
! GTAGAAACAATAAGAATCTT+TGG + chr4_1:60691782-60691801 None:intergenic 25.0%
! AATTATAATGTGGAGTTTAG+TGG - chr4_1:60691977-60691996 Msa0561230:intron 25.0%
! ATTATAATGTGGAGTTTAGT+GGG - chr4_1:60691978-60691997 Msa0561230:intron 25.0%
!!! AGTATTGATAGGTTTAGTTA+AGG - chr4_1:60692263-60692282 Msa0561230:five_prime_UTR 25.0%
!! GTATTGATAGGTTTAGTTAA+GGG - chr4_1:60692264-60692283 Msa0561230:five_prime_UTR 25.0%
! AAGCTGGATATTTAAATGTT+AGG - chr4_1:60692332-60692351 Msa0561230:five_prime_UTR 25.0%
! AGCTGGATATTTAAATGTTA+GGG - chr4_1:60692333-60692352 Msa0561230:five_prime_UTR 25.0%
! GTTTAAAAGAATACACATGA+TGG - chr4_1:60692378-60692397 Msa0561230:five_prime_UTR 25.0%
!!! ATACACATGATGGTTTTTTA+TGG - chr4_1:60692388-60692407 Msa0561230:five_prime_UTR 25.0%
GAATTGTTAAGGAAAAAGAG+TGG + chr4_1:60683880-60683899 None:intergenic 30.0%
TTCAACAACAACAAACCTTT+AGG - chr4_1:60683965-60683984 Msa0561230:three_prime_UTR 30.0%
TTTCTTCAACACACACAAAA+AGG + chr4_1:60684241-60684260 None:intergenic 30.0%
! AAATTTCTGGAAAATGAGCA+TGG - chr4_1:60684269-60684288 Msa0561230:CDS 30.0%
! AATTTCTGGAAAATGAGCAT+GGG - chr4_1:60684270-60684289 Msa0561230:CDS 30.0%
AGGGTGACTTATAAAAATCT+AGG + chr4_1:60684416-60684435 None:intergenic 30.0%
!! TTTTGGTGTATTATAGCCTT+CGG + chr4_1:60684709-60684728 None:intergenic 30.0%
GCTATAATACACCAAAAGTT+TGG - chr4_1:60684712-60684731 Msa0561230:intron 30.0%
!! TCAATAATTTGCTTACTGAC+TGG + chr4_1:60684944-60684963 None:intergenic 30.0%
TCAAACTCAACTTTCTACTT+AGG + chr4_1:60685160-60685179 None:intergenic 30.0%
! TGAGTTTGATTTCTTGCATT+TGG - chr4_1:60685171-60685190 Msa0561230:intron 30.0%
!! GTCAATGTCTTGTATTTTAG+AGG - chr4_1:60685593-60685612 Msa0561230:intron 30.0%
! TATAGTTTGCAACAATGAGT+CGG + chr4_1:60685653-60685672 None:intergenic 30.0%
!! AAGTGTTTATCTGTTTTGAG+AGG - chr4_1:60685829-60685848 Msa0561230:intron 30.0%
! AGTCCCTTTTATGTAATAAG+AGG - chr4_1:60686068-60686087 Msa0561230:intron 30.0%
! AAGCACTTATCTTGTGTTTT+TGG - chr4_1:60686186-60686205 Msa0561230:intron 30.0%
!! TAACCTGTTTCTACAATAGA+AGG + chr4_1:60686227-60686246 None:intergenic 30.0%
!! ATCATTTTGTTGTGTTTAGC+CGG - chr4_1:60686300-60686319 Msa0561230:intron 30.0%
! GTTTGTTGCAATGAACATTA+AGG - chr4_1:60686535-60686554 Msa0561230:CDS 30.0%
CTGACAAACACATGTAATAT+TGG + chr4_1:60686832-60686851 None:intergenic 30.0%
TGATGAATGGCAAAGAAAAA+TGG + chr4_1:60686877-60686896 None:intergenic 30.0%
GTGTAAATGTATTAATCCTG+AGG - chr4_1:60687028-60687047 Msa0561230:CDS 30.0%
TAAATGTATTAATCCTGAGG+TGG - chr4_1:60687031-60687050 Msa0561230:CDS 30.0%
ATATATGGAAGGACCAAAAA+CGG + chr4_1:60687065-60687084 None:intergenic 30.0%
TTACATCTGAACAACATATC+TGG - chr4_1:60687120-60687139 Msa0561230:CDS 30.0%
AACGACTCTATAATATCTTG+TGG + chr4_1:60687167-60687186 None:intergenic 30.0%
GTTCATTTGCAATGATATCA+AGG + chr4_1:60687304-60687323 None:intergenic 30.0%
GATATCATTGCAAATGAACT+TGG - chr4_1:60687305-60687324 Msa0561230:CDS 30.0%
TAGAGATCCTTCAAAATGAA+TGG + chr4_1:60687541-60687560 None:intergenic 30.0%
TAACTGTTCGGTTATATTAC+AGG - chr4_1:60687664-60687683 Msa0561230:CDS 30.0%
TCTTGGCTAAACTTAATACT+TGG - chr4_1:60687749-60687768 Msa0561230:CDS 30.0%
CAGTTATCAAAAACAGCAAA+GGG + chr4_1:60687861-60687880 None:intergenic 30.0%
TCAGTTATCAAAAACAGCAA+AGG + chr4_1:60687862-60687881 None:intergenic 30.0%
CTTAGGCTAAGAAAGATAAA+GGG - chr4_1:60687965-60687984 Msa0561230:intron 30.0%
!!! TCGTTTGCATGATGTTTTTT+TGG - chr4_1:60688086-60688105 Msa0561230:intron 30.0%
GAATTCAATGGATGCAAAAA+TGG + chr4_1:60688139-60688158 None:intergenic 30.0%
AACATACAAAGAATATCCCT+AGG + chr4_1:60688384-60688403 None:intergenic 30.0%
! TGACTTATAATGGAAAAGAG+AGG + chr4_1:60688432-60688451 None:intergenic 30.0%
TTTGAGAGGATGACTTATAA+TGG + chr4_1:60688442-60688461 None:intergenic 30.0%
! GTGAAATAAAGTTGCTTTCT+CGG - chr4_1:60688586-60688605 Msa0561230:CDS 30.0%
!! AAAGGTTTTTGGAAAAAACG+TGG + chr4_1:60688776-60688795 None:intergenic 30.0%
!! AATCTCTCTGAAAAGGTTTT+TGG + chr4_1:60688787-60688806 None:intergenic 30.0%
! CAATTACAATCTCTCTGAAA+AGG + chr4_1:60688794-60688813 None:intergenic 30.0%
! CTTTTCAGAGAGATTGTAAT+TGG - chr4_1:60688792-60688811 Msa0561230:intron 30.0%
TGTAATGAATTTGCACACAT+TGG + chr4_1:60688873-60688892 None:intergenic 30.0%
TTATTCAGTATCTTTGGTTG+TGG - chr4_1:60688983-60689002 Msa0561230:CDS 30.0%
! AATGAGTTTGAGTTTGAGAT+TGG - chr4_1:60689041-60689060 Msa0561230:CDS 30.0%
! ATGAGTTTGAGTTTGAGATT+GGG - chr4_1:60689042-60689061 Msa0561230:CDS 30.0%
AAGTAACTCACTAGAAGATA+AGG + chr4_1:60689201-60689220 None:intergenic 30.0%
! TATTTTCTTTTGTTAGTCCG+AGG - chr4_1:60689507-60689526 Msa0561230:intron 30.0%
!! TGGTGTTGATATTTCACAAA+AGG - chr4_1:60689640-60689659 Msa0561230:intron 30.0%
!! GGTGTTGATATTTCACAAAA+GGG - chr4_1:60689641-60689660 Msa0561230:intron 30.0%
AAGTAGAGTAATTAGGGTTT+AGG - chr4_1:60689729-60689748 Msa0561230:intron 30.0%
GTCATTACTTTGGCATATTT+AGG + chr4_1:60689834-60689853 None:intergenic 30.0%
TCAGACAAAAGTCATTACTT+TGG + chr4_1:60689844-60689863 None:intergenic 30.0%
GTTTCGTTATCTTGAATTCA+CGG + chr4_1:60689867-60689886 None:intergenic 30.0%
! AATGATAAAGGTTAGCTCAA+AGG - chr4_1:60689899-60689918 Msa0561230:intron 30.0%
GGTGGAATAATAGAAAAGAA+AGG - chr4_1:60689931-60689950 Msa0561230:intron 30.0%
GAGATTGTTAGAAGTTAGTT+AGG + chr4_1:60690018-60690037 None:intergenic 30.0%
!!! GTTGACTTTCGTTGATTTTA+GGG + chr4_1:60690086-60690105 None:intergenic 30.0%
!!! AGTTGACTTTCGTTGATTTT+AGG + chr4_1:60690087-60690106 None:intergenic 30.0%
!!! ATATGGTTTTGTGTAGAGAA+GGG + chr4_1:60690295-60690314 None:intergenic 30.0%
!!! TATATGGTTTTGTGTAGAGA+AGG + chr4_1:60690296-60690315 None:intergenic 30.0%
AGTTAGGATTATCGTGTATA+TGG + chr4_1:60690312-60690331 None:intergenic 30.0%
! AGGATAAAGATGAGTTTGTT+AGG + chr4_1:60690345-60690364 None:intergenic 30.0%
!! GTCTTGGTCTTATACTTTAT+AGG - chr4_1:60690610-60690629 Msa0561230:intron 30.0%
AAGTCAGTTATTCTTTACGA+AGG - chr4_1:60690796-60690815 Msa0561230:intron 30.0%
TGATATTGGTACTTGTTTAG+AGG - chr4_1:60690855-60690874 Msa0561230:intron 30.0%
AAAATGAATGGTAGCAACAT+GGG + chr4_1:60691289-60691308 None:intergenic 30.0%
TAAAATGAATGGTAGCAACA+TGG + chr4_1:60691290-60691309 None:intergenic 30.0%
TATCCTAGTTTAAACGCTTT+AGG - chr4_1:60691425-60691444 Msa0561230:CDS 30.0%
TATGAGCAAAATTGAAACAG+AGG + chr4_1:60691598-60691617 None:intergenic 30.0%
TGTAGAAACTCTGATTATCT+TGG - chr4_1:60691649-60691668 Msa0561230:intron 30.0%
ATAATGACCACAAATTTGAG+TGG - chr4_1:60691906-60691925 Msa0561230:intron 30.0%
TTATAATGTGGAGTTTAGTG+GGG - chr4_1:60691979-60691998 Msa0561230:intron 30.0%
!! CATTCTGTTAGCTTCTTTTA+AGG + chr4_1:60692166-60692185 None:intergenic 30.0%
!! ACTTATATAGTTCTGATTGC+TGG - chr4_1:60692188-60692207 Msa0561230:intron 30.0%
!! CTTATATAGTTCTGATTGCT+GGG - chr4_1:60692189-60692208 Msa0561230:intron 30.0%
AGAAGACAACCAAAATAGAA+TGG - chr4_1:60692218-60692237 Msa0561230:five_prime_UTR 30.0%
TGAAATTGCTAGGATATATG+TGG - chr4_1:60692295-60692314 Msa0561230:five_prime_UTR 30.0%
AATCATTGCTGCTACTAACT+TGG + chr4_1:60683763-60683782 None:intergenic 35.0%
AAAAGGGAAAAAGCGAGAAT+CGG + chr4_1:60684031-60684050 None:intergenic 35.0%
CAACAGCATAATGCAAAAAG+AGG + chr4_1:60684144-60684163 None:intergenic 35.0%
TGTAACCACATGTGTCTATT+GGG + chr4_1:60684474-60684493 None:intergenic 35.0%
ATGTAACCACATGTGTCTAT+TGG + chr4_1:60684475-60684494 None:intergenic 35.0%
ACAAACACATACTCTGAACA+CGG + chr4_1:60684555-60684574 None:intergenic 35.0%
TTCAGAGTATGTGTTTGTGT+CGG - chr4_1:60684557-60684576 Msa0561230:intron 35.0%
!! GTTGATTTTCAAGAATACGC+TGG - chr4_1:60684613-60684632 Msa0561230:intron 35.0%
! AAATGTTCTGAGCTTTCTCA+TGG - chr4_1:60684636-60684655 Msa0561230:intron 35.0%
! TATTATAGCCTTCGGTGTAA+GGG + chr4_1:60684701-60684720 None:intergenic 35.0%
!! TGGTAAAAATGCTTGCTATG+TGG - chr4_1:60684732-60684751 Msa0561230:intron 35.0%
TCTCTCAAAATGAATGTCCA+GGG - chr4_1:60684773-60684792 Msa0561230:intron 35.0%
AGTTCAATTCTACCACTTCT+TGG + chr4_1:60685059-60685078 None:intergenic 35.0%
! TCAGATGGGCTCAATTAAAA+TGG - chr4_1:60685506-60685525 Msa0561230:intron 35.0%
AAATACAGAGGATAGGCAAA+TGG - chr4_1:60685679-60685698 Msa0561230:intron 35.0%
GCAGATATGATACAACACAA+AGG + chr4_1:60685803-60685822 None:intergenic 35.0%
ACACCTTCTATTGTAGAAAC+AGG - chr4_1:60686221-60686240 Msa0561230:intron 35.0%
TTAGAAACCTGAAGGATCAT+TGG + chr4_1:60686331-60686350 None:intergenic 35.0%
AAACGGAATTAGAAACCTGA+AGG + chr4_1:60686339-60686358 None:intergenic 35.0%
AAAAAATCATAAGGATGGCC+AGG + chr4_1:60686364-60686383 None:intergenic 35.0%
ATCAAACAATCGGGAATGAA+GGG + chr4_1:60686592-60686611 None:intergenic 35.0%
TTTGCTTGCCATCAAACAAT+CGG + chr4_1:60686602-60686621 None:intergenic 35.0%
GAAACTGTATAGGTGATGAA+TGG + chr4_1:60686890-60686909 None:intergenic 35.0%
TGGTCCTTCCATATATAGTA+AGG - chr4_1:60687069-60687088 Msa0561230:CDS 35.0%
GGTCCTTCCATATATAGTAA+GGG - chr4_1:60687070-60687089 Msa0561230:CDS 35.0%
TATAGAGTCGTTAATGGAAG+AGG - chr4_1:60687175-60687194 Msa0561230:CDS 35.0%
ATAGAGTCGTTAATGGAAGA+GGG - chr4_1:60687176-60687195 Msa0561230:CDS 35.0%
TGATTCACAAGAATGCATTC+AGG - chr4_1:60687199-60687218 Msa0561230:CDS 35.0%
! ACATGTTTTTCCATTGAACC+AGG + chr4_1:60687242-60687261 None:intergenic 35.0%
! AATGAACTTGGGTTAGAAGA+TGG - chr4_1:60687317-60687336 Msa0561230:CDS 35.0%
! ATGAACTTGGGTTAGAAGAT+GGG - chr4_1:60687318-60687337 Msa0561230:CDS 35.0%
AGCTTTGCCTATATTCCTAT+TGG + chr4_1:60687436-60687455 None:intergenic 35.0%
GACAATCATATCTACTGGAT+CGG - chr4_1:60687487-60687506 Msa0561230:CDS 35.0%
TTGAAGGATCTCTAAATGCA+AGG - chr4_1:60687547-60687566 Msa0561230:CDS 35.0%
TGAAGGATCTCTAAATGCAA+GGG - chr4_1:60687548-60687567 Msa0561230:CDS 35.0%
! ATCTAGAGATCTTTTCTACG+AGG - chr4_1:60687638-60687657 Msa0561230:CDS 35.0%
! AAAACAGCAAAGGGTTTTAC+AGG + chr4_1:60687852-60687871 None:intergenic 35.0%
GCTTAGGCTAAGAAAGATAA+AGG - chr4_1:60687964-60687983 Msa0561230:intron 35.0%
ATTGTACAGCAACATCAGAA+AGG + chr4_1:60687992-60688011 None:intergenic 35.0%
TGCAAACGAGAAACAAAAGT+TGG + chr4_1:60688075-60688094 None:intergenic 35.0%
CAATGGATGCAAAAATGGAT+TGG + chr4_1:60688134-60688153 None:intergenic 35.0%
TGCATCATTTAGTGATTGCT+AGG - chr4_1:60688234-60688253 Msa0561230:intron 35.0%
! GATTGCTAGGTTTTCTATAC+AGG - chr4_1:60688247-60688266 Msa0561230:intron 35.0%
TTTCTATACAGGATGCTTCT+AGG - chr4_1:60688258-60688277 Msa0561230:intron 35.0%
TTCTATACAGGATGCTTCTA+GGG - chr4_1:60688259-60688278 Msa0561230:intron 35.0%
! GATAATTTGTAAATTCCCCC+GGG + chr4_1:60688291-60688310 None:intergenic 35.0%
! GGATAATTTGTAAATTCCCC+CGG + chr4_1:60688292-60688311 None:intergenic 35.0%
ACTCTTGTGGTAAATCTTGA+AGG + chr4_1:60688342-60688361 None:intergenic 35.0%
GATTTACCACAAGAGTTAAC+TGG - chr4_1:60688346-60688365 Msa0561230:intron 35.0%
ACAAAGAATATCCCTAGGAA+GGG + chr4_1:60688379-60688398 None:intergenic 35.0%
TACAAAGAATATCCCTAGGA+AGG + chr4_1:60688380-60688399 None:intergenic 35.0%
!! GATTCAGTTGGTATTTTGAG+AGG + chr4_1:60688456-60688475 None:intergenic 35.0%
! CATGACTTTGATGATTCAGT+TGG + chr4_1:60688468-60688487 None:intergenic 35.0%
CCATGATAGAAGTTTCAATG+AGG + chr4_1:60688682-60688701 None:intergenic 35.0%
CCTCATTGAAACTTCTATCA+TGG - chr4_1:60688679-60688698 Msa0561230:CDS 35.0%
ATTGGTCAATCCATTCAGAA+TGG - chr4_1:60688810-60688829 Msa0561230:intron 35.0%
ATAAAGATGGCCATTCTGAA+TGG + chr4_1:60688823-60688842 None:intergenic 35.0%
TACACTGCATTGCATAAAGA+TGG + chr4_1:60688836-60688855 None:intergenic 35.0%
GTTTGCAGCTTAAAGATTGA+AGG - chr4_1:60688912-60688931 Msa0561230:CDS 35.0%
! TGAGTTTGAGTTTGAGATTG+GGG - chr4_1:60689043-60689062 Msa0561230:CDS 35.0%
TGCTGTGATTTCATTCATTG+AGG - chr4_1:60689070-60689089 Msa0561230:CDS 35.0%
TGTGATTTCATTCATTGAGG+AGG - chr4_1:60689073-60689092 Msa0561230:CDS 35.0%
TCGTGTTGAAATAAGCATAC+TGG + chr4_1:60689121-60689140 None:intergenic 35.0%
!! GATTTGATTTTTGCTTCAGC+TGG - chr4_1:60689155-60689174 Msa0561230:CDS 35.0%
AACTCACTAGAAGATAAGGA+CGG + chr4_1:60689197-60689216 None:intergenic 35.0%
AGAATCACATGCTACTACTT+TGG - chr4_1:60689464-60689483 Msa0561230:intron 35.0%
TTTCACAAAAGGGTCTTACA+CGG - chr4_1:60689651-60689670 Msa0561230:intron 35.0%
ACTCTACAATAGAGTCTTGA+TGG + chr4_1:60690182-60690201 None:intergenic 35.0%
TGTAGTCTTTGTGTAGAGAA+GGG - chr4_1:60690203-60690222 Msa0561230:CDS 35.0%
!! ATGAGTTTGTTAGGATAGTG+GGG + chr4_1:60690336-60690355 None:intergenic 35.0%
!! GATGAGTTTGTTAGGATAGT+GGG + chr4_1:60690337-60690356 None:intergenic 35.0%
!! AGATGAGTTTGTTAGGATAG+TGG + chr4_1:60690338-60690357 None:intergenic 35.0%
TTATGGGCAGCATTATTGTT+AGG + chr4_1:60690371-60690390 None:intergenic 35.0%
TTTGTGTGCATAAATTGTGC+AGG - chr4_1:60690717-60690736 Msa0561230:intron 35.0%
!!! AATTTTGATTCCAGGTTGCA+TGG - chr4_1:60690829-60690848 Msa0561230:intron 35.0%
!!! ATTTTGATTCCAGGTTGCAT+GGG - chr4_1:60690830-60690849 Msa0561230:intron 35.0%
!! TCTATGATGCATGGTTTGTT+TGG - chr4_1:60691007-60691026 Msa0561230:intron 35.0%
AAATGAATGGTAGCAACATG+GGG + chr4_1:60691288-60691307 None:intergenic 35.0%
!! ATGTAGAAGTGCTTGTTTAC+AGG + chr4_1:60691374-60691393 None:intergenic 35.0%
! AAGCCTAAAGCGTTTAAACT+AGG + chr4_1:60691431-60691450 None:intergenic 35.0%
! AACGCTTTAGGCTTAAAAAC+TGG - chr4_1:60691437-60691456 Msa0561230:CDS 35.0%
TATTTCCAAGAACATGACAC+TGG + chr4_1:60691575-60691594 None:intergenic 35.0%
CTACACAAATGCAGATTTAC+AGG + chr4_1:60691634-60691653 None:intergenic 35.0%
AATGCAGGTGATTGAACATA+TGG - chr4_1:60691706-60691725 Msa0561230:intron 35.0%
AAGATCAAGCTTGTCTCTTT+GGG - chr4_1:60691732-60691751 Msa0561230:intron 35.0%
ATTCTTCTTGTTCTTGGGTA+GGG + chr4_1:60691847-60691866 None:intergenic 35.0%
AATTCTTCTTGTTCTTGGGT+AGG + chr4_1:60691848-60691867 None:intergenic 35.0%
TACCCAAGAACAAGAAGAAT+TGG - chr4_1:60691847-60691866 Msa0561230:intron 35.0%
GTCCAATTCTTCTTGTTCTT+GGG + chr4_1:60691852-60691871 None:intergenic 35.0%
CAAGAACAAGAAGAATTGGA+CGG - chr4_1:60691851-60691870 Msa0561230:intron 35.0%
AAGAACAAGAAGAATTGGAC+GGG - chr4_1:60691852-60691871 Msa0561230:intron 35.0%
AAACTTGCATGACTGTAAGA+GGG + chr4_1:60691882-60691901 None:intergenic 35.0%
TTGCTGTGTTCAAAAGAGAA+TGG - chr4_1:60692044-60692063 Msa0561230:intron 35.0%
TATCTATATCAGTATGCGTC+TGG + chr4_1:60692087-60692106 None:intergenic 35.0%
ACCAAAATAGAATGGATGCT+AGG - chr4_1:60692226-60692245 Msa0561230:five_prime_UTR 35.0%
! TCCTAGCATCCATTCTATTT+TGG + chr4_1:60692230-60692249 None:intergenic 35.0%
AGAATGGATGCTAGGAAATA+AGG - chr4_1:60692234-60692253 Msa0561230:five_prime_UTR 35.0%
GAATGGATGCTAGGAAATAA+GGG - chr4_1:60692235-60692254 Msa0561230:five_prime_UTR 35.0%
!! TAAGGGAAGGAAGTATTGAT+AGG - chr4_1:60692252-60692271 Msa0561230:five_prime_UTR 35.0%
TTAAACTTCATGTCACCCTA+GGG + chr4_1:60692364-60692383 None:intergenic 35.0%
TTTAAACTTCATGTCACCCT+AGG + chr4_1:60692365-60692384 None:intergenic 35.0%
TAGCAGCAATGATTCCGTTA+CGG - chr4_1:60683769-60683788 Msa0561230:three_prime_UTR 40.0%
AATGATTCCGTTACGGAACA+GGG - chr4_1:60683776-60683795 Msa0561230:three_prime_UTR 40.0%
AAAGAGTGGAAGACGAAAGA+GGG + chr4_1:60683866-60683885 None:intergenic 40.0%
AAAAGAGTGGAAGACGAAAG+AGG + chr4_1:60683867-60683886 None:intergenic 40.0%
AAATTGAAAGCGAGTGTGAG+TGG + chr4_1:60684054-60684073 None:intergenic 40.0%
TAAAGCCCAATAGACACATG+TGG - chr4_1:60684466-60684485 Msa0561230:intron 40.0%
!! TGTCGGTGCTTCATAGTTTT+TGG - chr4_1:60684574-60684593 Msa0561230:intron 40.0%
! GTATTATAGCCTTCGGTGTA+AGG + chr4_1:60684702-60684721 None:intergenic 40.0%
!! AAATGCTTGCTATGTGGTAG+AGG - chr4_1:60684738-60684757 Msa0561230:intron 40.0%
GTCTCTCAAAATGAATGTCC+AGG - chr4_1:60684772-60684791 Msa0561230:intron 40.0%
CTTGTCACAACTGTAAGTTC+TGG + chr4_1:60684850-60684869 None:intergenic 40.0%
CAGAACTTACAGTTGTGACA+AGG - chr4_1:60684848-60684867 Msa0561230:intron 40.0%
GCTATTATCATCTTCACAGC+AGG + chr4_1:60685138-60685157 None:intergenic 40.0%
!! TCAATTTCAGTGGGCTAGTT+TGG - chr4_1:60685403-60685422 Msa0561230:CDS 40.0%
GTTACTGTATAATCGGCACT+AGG + chr4_1:60685712-60685731 None:intergenic 40.0%
TTAAATTGCCACTGCTACGT+AGG - chr4_1:60685773-60685792 Msa0561230:intron 40.0%
CTGTAATGATACCAATCTGC+AGG + chr4_1:60685901-60685920 None:intergenic 40.0%
AAACTTTCTTGTGCATCCTG+AGG + chr4_1:60685941-60685960 None:intergenic 40.0%
TGAAGGATCATTGGATCATC+CGG + chr4_1:60686322-60686341 None:intergenic 40.0%
GTTTCTAATTCCGTTTCACC+TGG - chr4_1:60686343-60686362 Msa0561230:intron 40.0%
TACAGAGCAATCTAGCAGTT+AGG + chr4_1:60686390-60686409 None:intergenic 40.0%
GAGCTGGTAACTAAGACATT+TGG - chr4_1:60686428-60686447 Msa0561230:intron 40.0%
CATCAAACAATCGGGAATGA+AGG + chr4_1:60686593-60686612 None:intergenic 40.0%
CTTCATTCCCGATTGTTTGA+TGG - chr4_1:60686591-60686610 Msa0561230:CDS 40.0%
TTGCTTGCCATCAAACAATC+GGG + chr4_1:60686601-60686620 None:intergenic 40.0%
GAACGTTGTTGGACATTCAT+AGG - chr4_1:60686650-60686669 Msa0561230:intron 40.0%
GACATACAATTACACCTTGC+TGG - chr4_1:60686748-60686767 Msa0561230:CDS 40.0%
TTTCAATGTGATGACCAGCA+AGG + chr4_1:60686765-60686784 None:intergenic 40.0%
CAGACAGCAATGACAGAAAT+AGG + chr4_1:60686987-60687006 None:intergenic 40.0%
CAGCCCTTACTATATATGGA+AGG + chr4_1:60687076-60687095 None:intergenic 40.0%
GTAGCAGCCCTTACTATATA+TGG + chr4_1:60687080-60687099 None:intergenic 40.0%
!! ACAAGAATGCATTCAGGTTG+AGG - chr4_1:60687205-60687224 Msa0561230:CDS 40.0%
! TGAACTTGGGTTAGAAGATG+GGG - chr4_1:60687319-60687338 Msa0561230:CDS 40.0%
GGGTCAATGTTCTGATTTCA+AGG - chr4_1:60687339-60687358 Msa0561230:CDS 40.0%
TTGATCTTTGTGGCTCCAAT+AGG - chr4_1:60687418-60687437 Msa0561230:CDS 40.0%
TGTGGCTCCAATAGGAATAT+AGG - chr4_1:60687426-60687445 Msa0561230:CDS 40.0%
TGCTCGACAATCATATCTAC+TGG - chr4_1:60687482-60687501 Msa0561230:CDS 40.0%
! ACTGGATCGGTCTTTTGTAT+CGG - chr4_1:60687500-60687519 Msa0561230:CDS 40.0%
TTGTCTGGGCAAGATATAGT+TGG - chr4_1:60687579-60687598 Msa0561230:CDS 40.0%
GATGCAATCTTAGCATGCAT+CGG - chr4_1:60687603-60687622 Msa0561230:CDS 40.0%
TAGCATGCATCGGATATACA+CGG - chr4_1:60687613-60687632 Msa0561230:CDS 40.0%
TCTACGAGGATGTAACTGTT+CGG - chr4_1:60687652-60687671 Msa0561230:CDS 40.0%
TGGGATGCCTAATTAAAACC+TGG + chr4_1:60687939-60687958 None:intergenic 40.0%
!!! GGTTTTAATTAGGCATCCCA+CGG - chr4_1:60687939-60687958 Msa0561230:intron 40.0%
!! TGGATGCAAAAATGGATTGG+AGG + chr4_1:60688131-60688150 None:intergenic 40.0%
TTACCACAAGAGTTAACTGG+AGG - chr4_1:60688349-60688368 Msa0561230:intron 40.0%
TACCACAAGAGTTAACTGGA+GGG - chr4_1:60688350-60688369 Msa0561230:intron 40.0%
!!! AAGTCATGTTTTAAGGCTGC+AGG - chr4_1:60688480-60688499 Msa0561230:intron 40.0%
GATGTGATTGAATGTGCCAA+CGG - chr4_1:60688513-60688532 Msa0561230:CDS 40.0%
ATGTGATTGAATGTGCCAAC+GGG - chr4_1:60688514-60688533 Msa0561230:CDS 40.0%
CTTTGGACATCCATTTACAG+AGG + chr4_1:60688541-60688560 None:intergenic 40.0%
TGTCCAAAGCAATCAGATTC+AGG - chr4_1:60688552-60688571 Msa0561230:CDS 40.0%
GTCCAAAGCAATCAGATTCA+GGG - chr4_1:60688553-60688572 Msa0561230:CDS 40.0%
ATCCCTGAATCTGATTGCTT+TGG + chr4_1:60688558-60688577 None:intergenic 40.0%
! AATACTCTTTTGTTCCCCTG+AGG - chr4_1:60688620-60688639 Msa0561230:CDS 40.0%
CTTCCTATAACAATCCTCAG+GGG + chr4_1:60688637-60688656 None:intergenic 40.0%
GCTTCCTATAACAATCCTCA+GGG + chr4_1:60688638-60688657 None:intergenic 40.0%
TGCTTCCTATAACAATCCTC+AGG + chr4_1:60688639-60688658 None:intergenic 40.0%
! GTGTAACTGCTCCTTTTGAA+CGG - chr4_1:60688721-60688740 Msa0561230:CDS 40.0%
CAAGGTAAAGATCCATTGCA+TGG + chr4_1:60688957-60688976 None:intergenic 40.0%
TTCAGTATCTTTGGTTGTGG+AGG - chr4_1:60688986-60689005 Msa0561230:CDS 40.0%
TCAGTATCTTTGGTTGTGGA+GGG - chr4_1:60688987-60689006 Msa0561230:CDS 40.0%
! TTTGAGTTTGAGATTGGGGT+TGG - chr4_1:60689047-60689066 Msa0561230:CDS 40.0%
AGAAGATAAGGACGGCATTA+TGG + chr4_1:60689189-60689208 None:intergenic 40.0%
GCAAAACAACGTACATGTGT+GGG + chr4_1:60689249-60689268 None:intergenic 40.0%
TGCAAAACAACGTACATGTG+TGG + chr4_1:60689250-60689269 None:intergenic 40.0%
!! CATGTACGTTGTTTTGCAAG+TGG - chr4_1:60689252-60689271 Msa0561230:CDS 40.0%
TATTTCATACTCCACACAGC+AGG + chr4_1:60689340-60689359 None:intergenic 40.0%
AGAACCTCAAACTCACAACT+TGG + chr4_1:60689534-60689553 None:intergenic 40.0%
CCAAAATCAAGCTGCAATGA+AGG + chr4_1:60689557-60689576 None:intergenic 40.0%
! CCTTCATTGCAGCTTGATTT+TGG - chr4_1:60689554-60689573 Msa0561230:intron 40.0%
! TTGCAGCTTGATTTTGGATG+TGG - chr4_1:60689560-60689579 Msa0561230:intron 40.0%
! CTTGATTTTGGATGTGGATC+TGG - chr4_1:60689566-60689585 Msa0561230:intron 40.0%
GCTAAATTACACAACTTCGC+TGG - chr4_1:60689607-60689626 Msa0561230:intron 40.0%
TTCACAAAAGGGTCTTACAC+GGG - chr4_1:60689652-60689671 Msa0561230:intron 40.0%
TTAGCTCAAAGGCTCTACAA+TGG - chr4_1:60689910-60689929 Msa0561230:intron 40.0%
AGTTAGGAAAGTTCTCTCTC+TGG + chr4_1:60690002-60690021 None:intergenic 40.0%
! CTAGAAGATTGCAGAAGCAT+AGG + chr4_1:60690121-60690140 None:intergenic 40.0%
AATAGAGTCTTGATGGAGTC+GGG + chr4_1:60690175-60690194 None:intergenic 40.0%
CAATAGAGTCTTGATGGAGT+CGG + chr4_1:60690176-60690195 None:intergenic 40.0%
CTGTAGTCTTTGTGTAGAGA+AGG - chr4_1:60690202-60690221 Msa0561230:CDS 40.0%
! AGTAGCTCTATTGTAGAGAG+TGG - chr4_1:60690265-60690284 Msa0561230:CDS 40.0%
! GTAGCTCTATTGTAGAGAGT+GGG - chr4_1:60690266-60690285 Msa0561230:CDS 40.0%
GCAGCATTATTGTTAGGACA+AGG + chr4_1:60690365-60690384 None:intergenic 40.0%
! GTTGGATGAATAGTTGATGC+TGG - chr4_1:60690568-60690587 Msa0561230:intron 40.0%
! TTCCAACACAAAGCACTAGA+AGG + chr4_1:60690637-60690656 None:intergenic 40.0%
TTAGATGCAAATCCAGATGC+TGG - chr4_1:60690754-60690773 Msa0561230:intron 40.0%
AATATCAAACCCATGCAACC+TGG + chr4_1:60690842-60690861 None:intergenic 40.0%
AGGTTGCATGGGTTTGATAT+TGG - chr4_1:60690841-60690860 Msa0561230:intron 40.0%
ACCACATTAGCTCACTTTAG+AGG - chr4_1:60691251-60691270 Msa0561230:intron 40.0%
!! TCCTCTAAAGTGAGCTAATG+TGG + chr4_1:60691255-60691274 None:intergenic 40.0%
!! TGTAGAAGTGCTTGTTCACA+GGG + chr4_1:60691493-60691512 None:intergenic 40.0%
!! ATGTAGAAGTGCTTGTTCAC+AGG + chr4_1:60691494-60691513 None:intergenic 40.0%
ATACCTCTGCTTCAATTTGC+TGG - chr4_1:60691529-60691548 Msa0561230:exon 40.0%
ATTCCAGCAAATTGAAGCAG+AGG + chr4_1:60691535-60691554 None:intergenic 40.0%
GAAGATCAAGCTTGTCTCTT+TGG - chr4_1:60691731-60691750 Msa0561230:intron 40.0%
AGATCAAGCTTGTCTCTTTG+GGG - chr4_1:60691733-60691752 Msa0561230:intron 40.0%
TTCTTCTTGTTCTTGGGTAG+GGG + chr4_1:60691846-60691865 None:intergenic 40.0%
CGTCCAATTCTTCTTGTTCT+TGG + chr4_1:60691853-60691872 None:intergenic 40.0%
GAAACTTGCATGACTGTAAG+AGG + chr4_1:60691883-60691902 None:intergenic 40.0%
TGCACGGCACAATTATAATG+TGG - chr4_1:60691967-60691986 Msa0561230:intron 40.0%
! GGATAGAGTCTGAAATTGCT+AGG - chr4_1:60692285-60692304 Msa0561230:five_prime_UTR 40.0%
! GGTGAGATATTTTGTGAAGC+TGG - chr4_1:60692316-60692335 Msa0561230:five_prime_UTR 40.0%
TAAACTTCATGTCACCCTAG+GGG + chr4_1:60692363-60692382 None:intergenic 40.0%
CAATGATTCCGTTACGGAAC+AGG - chr4_1:60683775-60683794 Msa0561230:three_prime_UTR 45.0%
GAGCGAGAGAATGTACCTAA+AGG + chr4_1:60683983-60684002 None:intergenic 45.0%
AAGCGAGTGTGAGTGGAAAA+GGG + chr4_1:60684047-60684066 None:intergenic 45.0%
AAAGCGAGTGTGAGTGGAAA+AGG + chr4_1:60684048-60684067 None:intergenic 45.0%
!!! GGTGTAAGGGCTGGTTTTTT+CGG + chr4_1:60684688-60684707 None:intergenic 45.0%
TGTGGTAGAGGAAGTGAAAG+AGG - chr4_1:60684750-60684769 Msa0561230:intron 45.0%
AGTGTGCAACGGTAAAGAGA+TGG + chr4_1:60684820-60684839 None:intergenic 45.0%
ATCAAACCTGAGACCTTGAG+AGG + chr4_1:60685372-60685391 None:intergenic 45.0%
!! GTCTCAGGTTTGATTTTCCC+CGG - chr4_1:60685378-60685397 Msa0561230:CDS 45.0%
TAGCCCACTGAAATTGACAC+CGG + chr4_1:60685400-60685419 None:intergenic 45.0%
GCTGAATGAGGACAACAAGA+AGG + chr4_1:60685461-60685480 None:intergenic 45.0%
ATCCTTTGTTGGGCTGAATG+AGG + chr4_1:60685473-60685492 None:intergenic 45.0%
TGAATTGCTCTCCTGCAGAT+TGG - chr4_1:60685887-60685906 Msa0561230:intron 45.0%
AAGCGCTACTGTCACAAGAT+AGG + chr4_1:60686116-60686135 None:intergenic 45.0%
GGATGATCCAATGATCCTTC+AGG - chr4_1:60686321-60686340 Msa0561230:intron 45.0%
ATAAGGATGGCCAGGTGAAA+CGG + chr4_1:60686356-60686375 None:intergenic 45.0%
CTCTGTAAGTAGCCAGTTCT+TGG - chr4_1:60686403-60686422 Msa0561230:intron 45.0%
TTACCAGCTCAACCAAGAAC+TGG + chr4_1:60686418-60686437 None:intergenic 45.0%
AGTACACAGCAACATCAGTG+AGG + chr4_1:60686476-60686495 None:intergenic 45.0%
GTCTGATCTCTGAACGTTGT+TGG - chr4_1:60686639-60686658 Msa0561230:intron 45.0%
ATATCTGATCATCCGCTCAG+TGG - chr4_1:60686912-60686931 Msa0561230:intron 45.0%
! GGTGGAGTCAAATCCGTTTT+TGG - chr4_1:60687049-60687068 Msa0561230:CDS 45.0%
CATTGAACCAGGAATGCGTA+TGG + chr4_1:60687231-60687250 None:intergenic 45.0%
CATACGCATTCCTGGTTCAA+TGG - chr4_1:60687229-60687248 Msa0561230:CDS 45.0%
! CTGGATCGGTCTTTTGTATC+GGG - chr4_1:60687501-60687520 Msa0561230:CDS 45.0%
! CGGTCTTTTGTATCGGGAAA+TGG - chr4_1:60687507-60687526 Msa0561230:CDS 45.0%
CAAGGGCAAGATACTTGTCT+GGG - chr4_1:60687565-60687584 Msa0561230:CDS 45.0%
! CAGCAAAGGGTTTTACAGGT+TGG + chr4_1:60687848-60687867 None:intergenic 45.0%
TTCTTAGCCTAAGCAACCGT+GGG + chr4_1:60687958-60687977 None:intergenic 45.0%
TTTCTTAGCCTAAGCAACCG+TGG + chr4_1:60687959-60687978 None:intergenic 45.0%
ACCACAAGAGTTAACTGGAG+GGG - chr4_1:60688351-60688370 Msa0561230:intron 45.0%
TGGAAAAGAGAGGTTCAGAC+AGG + chr4_1:60688422-60688441 None:intergenic 45.0%
!!! ATGTTTTAAGGCTGCAGGCT+TGG - chr4_1:60688485-60688504 Msa0561230:intron 45.0%
!!! TGTTTTAAGGCTGCAGGCTT+GGG - chr4_1:60688486-60688505 Msa0561230:intron 45.0%
TGTGATTGAATGTGCCAACG+GGG - chr4_1:60688515-60688534 Msa0561230:CDS 45.0%
! AAAGTTGCTTTCTCGGTGTG+CGG - chr4_1:60688593-60688612 Msa0561230:CDS 45.0%
GTTCCCCTGAGGATTGTTAT+AGG - chr4_1:60688631-60688650 Msa0561230:CDS 45.0%
GTCTCATAGAGCCGTTCAAA+AGG + chr4_1:60688735-60688754 None:intergenic 45.0%
AAGATTGAAGGTCCAGACTC+TGG - chr4_1:60688924-60688943 Msa0561230:CDS 45.0%
GTTGTGATGCAGATGTCTGT+TGG - chr4_1:60689095-60689114 Msa0561230:CDS 45.0%
AGAACCTCCAGAGGAAAGAA+TGG - chr4_1:60689377-60689396 Msa0561230:intron 45.0%
CAAACTCACAACTTGGACCT+CGG + chr4_1:60689527-60689546 None:intergenic 45.0%
AGGTCCAAGTTGTGAGTTTG+AGG - chr4_1:60689527-60689546 Msa0561230:intron 45.0%
ACTTCGCTGGAGAAAATTGC+TGG - chr4_1:60689620-60689639 Msa0561230:intron 45.0%
!! TGGTAAGAGTGTTCACACTC+CGG + chr4_1:60689962-60689981 None:intergenic 45.0%
GGAAAGTTCTCTCTCTGGTT+AGG + chr4_1:60689997-60690016 None:intergenic 45.0%
!! TTCTAGAATGTGCCTTGCCT+AGG - chr4_1:60690135-60690154 Msa0561230:intron 45.0%
AATGATAGGACACCTAGGCA+AGG + chr4_1:60690150-60690169 None:intergenic 45.0%
GTCTTTGTGTAGAGAAGGGA+AGG - chr4_1:60690207-60690226 Msa0561230:CDS 45.0%
!! GTTAGGATAGTGGGGTAGTT+AGG + chr4_1:60690328-60690347 None:intergenic 45.0%
GACTTGAATTCTGCTCAGTG+TGG - chr4_1:60690518-60690537 Msa0561230:intron 45.0%
CCAAGACCTCCAAGATCAAA+AGG + chr4_1:60690597-60690616 None:intergenic 45.0%
! CCTTTTGATCTTGGAGGTCT+TGG - chr4_1:60690594-60690613 Msa0561230:intron 45.0%
GACCTTCTAGTGCTTTGTGT+TGG - chr4_1:60690632-60690651 Msa0561230:intron 45.0%
ACCACATCAGCAGCATTATC+CGG + chr4_1:60691341-60691360 None:intergenic 45.0%
ACTGGATAATGCTGCTGATG+TGG - chr4_1:60691455-60691474 Msa0561230:CDS 45.0%
TGCAACCAGTGTCATGTTCT+TGG - chr4_1:60691567-60691586 Msa0561230:intron 45.0%
TCTTCTTGTTCTTGGGTAGG+GGG + chr4_1:60691845-60691864 None:intergenic 45.0%
CTCTGGTCCACTCAAATTTG+TGG + chr4_1:60691916-60691935 None:intergenic 45.0%
CAGAGAACAGTTCAACCAGT+GGG - chr4_1:60691931-60691950 Msa0561230:intron 45.0%
AATGTGGAGTTTAGTGGGGT+TGG - chr4_1:60691983-60692002 Msa0561230:intron 45.0%
GCAATCTGTGAAGCAAAACC+TGG + chr4_1:60692028-60692047 None:intergenic 45.0%
GGATGCTAGGAAATAAGGGA+AGG - chr4_1:60692239-60692258 Msa0561230:five_prime_UTR 45.0%
AAATGTTAGGGTCTTCCCCT+AGG - chr4_1:60692345-60692364 Msa0561230:five_prime_UTR 45.0%
AATGTTAGGGTCTTCCCCTA+GGG - chr4_1:60692346-60692365 Msa0561230:five_prime_UTR 45.0%
!! TGAAAAAAATAATAATTAAT+TGG + chr4_1:60684498-60684517 None:intergenic 5.0%
!!! TTATTTTTTTCAAATTTTTA+CGG - chr4_1:60684506-60684525 Msa0561230:intron 5.0%
GTACTGTCCCTGTTCCGTAA+CGG + chr4_1:60683786-60683805 None:intergenic 50.0%
! GAACAGGGACAGTACGCTTT+TGG - chr4_1:60683791-60683810 Msa0561230:three_prime_UTR 50.0%
GGCAACAAAAGAACGTCCTG+TGG - chr4_1:60684657-60684676 Msa0561230:intron 50.0%
AAAACCAGCCCTTACACCGA+AGG - chr4_1:60684690-60684709 Msa0561230:intron 50.0%
GTCTGAGGAATGCTTAACCC+TGG + chr4_1:60684793-60684812 None:intergenic 50.0%
GGTTAAGCATTCCTCAGACG+AGG - chr4_1:60684794-60684813 Msa0561230:intron 50.0%
TAAAGAGATGGCCTCGTCTG+AGG + chr4_1:60684808-60684827 None:intergenic 50.0%
TGCGGAGATGGCTATAGAGA+AGG - chr4_1:60684906-60684925 Msa0561230:intron 50.0%
TTCAGTTCCTCCAACCCACT+TGG - chr4_1:60685315-60685334 Msa0561230:intron 50.0%
TCAGTTCCTCCAACCCACTT+GGG - chr4_1:60685316-60685335 Msa0561230:intron 50.0%
! CTTGAGAGGAGCATACTCCA+AGG + chr4_1:60685358-60685377 None:intergenic 50.0%
CTTGGAGTATGCTCCTCTCA+AGG - chr4_1:60685356-60685375 Msa0561230:CDS 50.0%
TATGCTCCTCTCAAGGTCTC+AGG - chr4_1:60685363-60685382 Msa0561230:CDS 50.0%
! TTCCCCGGTGTCAATTTCAG+TGG - chr4_1:60685393-60685412 Msa0561230:CDS 50.0%
! TCCCCGGTGTCAATTTCAGT+GGG - chr4_1:60685394-60685413 Msa0561230:CDS 50.0%
AGCCCACTGAAATTGACACC+GGG + chr4_1:60685399-60685418 None:intergenic 50.0%
GTCCTCATTCAGCCCAACAA+AGG - chr4_1:60685468-60685487 Msa0561230:intron 50.0%
AAGGAGTTCCTACGTAGCAG+TGG + chr4_1:60685784-60685803 None:intergenic 50.0%
GACTGCTGATCTTACTCCTC+AGG - chr4_1:60685922-60685941 Msa0561230:intron 50.0%
TAGCCAGTTCTTGGTTGAGC+TGG - chr4_1:60686412-60686431 Msa0561230:intron 50.0%
ATCCGCTCAGTGGTCACATT+CGG - chr4_1:60686922-60686941 Msa0561230:intron 50.0%
!! GTCACATTCGGGCTAGTTTG+AGG - chr4_1:60686934-60686953 Msa0561230:intron 50.0%
AGGACGAAGAGCGATCATTG+TGG - chr4_1:60686954-60686973 Msa0561230:intron 50.0%
! AACGGATTTGACTCCACCTC+AGG + chr4_1:60687047-60687066 None:intergenic 50.0%
TCGAGCAGCAAAGAACAGTC+TGG + chr4_1:60687469-60687488 None:intergenic 50.0%
GCAAGGGCAAGATACTTGTC+TGG - chr4_1:60687564-60687583 Msa0561230:CDS 50.0%
! ATGCTTCTAGGGAAGACTCC+CGG - chr4_1:60688270-60688289 Msa0561230:intron 50.0%
ACCCCTCCAGTTAACTCTTG+TGG + chr4_1:60688355-60688374 None:intergenic 50.0%
AACGGCTCTATGAGACTGCA+GGG - chr4_1:60688739-60688758 Msa0561230:intron 50.0%
TCTGGTGTCTGTCCATGCAA+TGG - chr4_1:60688942-60688961 Msa0561230:CDS 50.0%
! CTCTGGAGGTTCTGCAACTT+TGG + chr4_1:60689370-60689389 None:intergenic 50.0%
CAAAGTTGCAGAACCTCCAG+AGG - chr4_1:60689368-60689387 Msa0561230:intron 50.0%
TGCTCCATTCTTTCCTCTGG+AGG + chr4_1:60689384-60689403 None:intergenic 50.0%
TCCAGAGGAAAGAATGGAGC+AGG - chr4_1:60689383-60689402 Msa0561230:intron 50.0%
CTCGTTGCTTCGAAAGTGGA+GGG + chr4_1:60689419-60689438 None:intergenic 50.0%
ACTCGTTGCTTCGAAAGTGG+AGG + chr4_1:60689420-60689439 None:intergenic 50.0%
TCCACTTTCGAAGCAACGAG+TGG - chr4_1:60689419-60689438 Msa0561230:intron 50.0%
TCCACTCGTTGCTTCGAAAG+TGG + chr4_1:60689423-60689442 None:intergenic 50.0%
ATGTGGATCTGGAAGCTTGC+TGG - chr4_1:60689577-60689596 Msa0561230:intron 50.0%
GCTCAAAGGCTCTACAATGG+TGG - chr4_1:60689913-60689932 Msa0561230:intron 50.0%
!! TGGTTAGGAGCATTGTGCTC+TGG + chr4_1:60689982-60690001 None:intergenic 50.0%
AAAGGGAGGGGAATGTAGTG+AGG + chr4_1:60690049-60690068 None:intergenic 50.0%
GGGACAATGATAGGACACCT+AGG + chr4_1:60690155-60690174 None:intergenic 50.0%
GATGGAGTCGGGACAATGAT+AGG + chr4_1:60690164-60690183 None:intergenic 50.0%
! TGCTGGCAGCCTTTTGATCT+TGG - chr4_1:60690585-60690604 Msa0561230:intron 50.0%
! TGGCAGCCTTTTGATCTTGG+AGG - chr4_1:60690588-60690607 Msa0561230:intron 50.0%
GTTCTTGTCACACCAGCATC+TGG + chr4_1:60690769-60690788 None:intergenic 50.0%
GAATGGTAGCAACATGGGGT+GGG + chr4_1:60691284-60691303 None:intergenic 50.0%
TGAATGGTAGCAACATGGGG+TGG + chr4_1:60691285-60691304 None:intergenic 50.0%
ACCGGATAATGCTGCTGATG+TGG - chr4_1:60691337-60691356 Msa0561230:CDS 50.0%
! AGCTTGTCTCTTTGGGGATG+TGG - chr4_1:60691739-60691758 Msa0561230:intron 50.0%
! CCACTGGTTGAACTGTTCTC+TGG + chr4_1:60691933-60691952 None:intergenic 50.0%
CCAGAGAACAGTTCAACCAG+TGG - chr4_1:60691930-60691949 Msa0561230:intron 50.0%
! GGTTTTGCTGATGTCGAACC+AGG - chr4_1:60692007-60692026 Msa0561230:intron 50.0%
! ATAGCCTTCGGTGTAAGGGC+TGG + chr4_1:60684697-60684716 None:intergenic 55.0%
CTGGAAGCTGCAGTGTGCAA+CGG + chr4_1:60684831-60684850 None:intergenic 55.0%
GGATGCAGAGCAATCTGCTG+CGG - chr4_1:60684888-60684907 Msa0561230:intron 55.0%
AGAGCAATCTGCTGCGGAGA+TGG - chr4_1:60684894-60684913 Msa0561230:intron 55.0%
CAAGCCAGGTCAACCCAAGT+GGG + chr4_1:60685332-60685351 None:intergenic 55.0%
!! CACTTGGGTTGACCTGGCTT+GGG - chr4_1:60685331-60685350 Msa0561230:CDS 55.0%
ATACTCCAAGGTCCCAAGCC+AGG + chr4_1:60685346-60685365 None:intergenic 55.0%
GCCCACTGAAATTGACACCG+GGG + chr4_1:60685398-60685417 None:intergenic 55.0%
TCCGCTCAGTGGTCACATTC+GGG - chr4_1:60686923-60686942 Msa0561230:intron 55.0%
GTTGAGGCCATACGCATTCC+TGG - chr4_1:60687221-60687240 Msa0561230:CDS 55.0%
TAGGCATCCCACGGTTGCTT+AGG - chr4_1:60687948-60687967 Msa0561230:intron 55.0%
! TGCTTCTAGGGAAGACTCCC+GGG - chr4_1:60688271-60688290 Msa0561230:intron 55.0%
AGCTGTGAGTAGTGCCTCTC+TGG + chr4_1:60688313-60688332 None:intergenic 55.0%
TCCATTTACAGAGGCCCCGT+TGG + chr4_1:60688532-60688551 None:intergenic 55.0%
GAACGGCTCTATGAGACTGC+AGG - chr4_1:60688738-60688757 Msa0561230:intron 55.0%
CATGGACAGACACCAGAGTC+TGG + chr4_1:60688939-60688958 None:intergenic 55.0%
! TTTTGCAGAGGCCTGCTGTG+TGG - chr4_1:60689326-60689345 Msa0561230:intron 55.0%
GCCTGCTCCATTCTTTCCTC+TGG + chr4_1:60689387-60689406 None:intergenic 55.0%
CAACCAGTGGGCATCTGACT+TGG - chr4_1:60691943-60691962 Msa0561230:intron 55.0%
GTGGAGTTTAGTGGGGTTGG+TGG - chr4_1:60691986-60692005 Msa0561230:intron 55.0%
!!! GGTTTTTTCGGCGCAGCCAC+AGG + chr4_1:60684676-60684695 None:intergenic 60.0%
!! GGTCAACCCAAGTGGGTTGG+AGG + chr4_1:60685325-60685344 None:intergenic 60.0%
CCAGGTCAACCCAAGTGGGT+TGG + chr4_1:60685328-60685347 None:intergenic 60.0%
!! CCAACCCACTTGGGTTGACC+TGG - chr4_1:60685325-60685344 Msa0561230:CDS 60.0%
CCAAGCCAGGTCAACCCAAG+TGG + chr4_1:60685333-60685352 None:intergenic 60.0%
!! CCACTTGGGTTGACCTGGCT+TGG - chr4_1:60685330-60685349 Msa0561230:CDS 60.0%
!! GTTGACCTGGCTTGGGACCT+TGG - chr4_1:60685338-60685357 Msa0561230:CDS 60.0%
GCCCGAATGTGACCACTGAG+CGG + chr4_1:60686927-60686946 None:intergenic 60.0%
! GCTTCTAGGGAAGACTCCCG+GGG - chr4_1:60688272-60688291 Msa0561230:intron 60.0%
! CTTCTAGGGAAGACTCCCGG+GGG - chr4_1:60688273-60688292 Msa0561230:intron 60.0%
ACTGGAGGGGTTCCCTTCCT+AGG - chr4_1:60688364-60688383 Msa0561230:intron 60.0%
CTGGAGGGGTTCCCTTCCTA+GGG - chr4_1:60688365-60688384 Msa0561230:intron 60.0%
GAGGTTCAGACAGGCGATGC+TGG + chr4_1:60688413-60688432 None:intergenic 60.0%
GCCAACGGGGCCTCTGTAAA+TGG - chr4_1:60688528-60688547 Msa0561230:CDS 60.0%
! GGGTCTTACACGGGCTGCAA+AGG - chr4_1:60689661-60689680 Msa0561230:intron 60.0%
CAGCCAAGTCAGATGCCCAC+TGG + chr4_1:60691949-60691968 None:intergenic 60.0%
!! GGGCATCTGACTTGGCTGCA+CGG - chr4_1:60691951-60691970 Msa0561230:intron 60.0%
CTTGTGCAGACAGCGCTCCC+TGG + chr4_1:60689805-60689824 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 60683746 60692448 60683746 ID=Msa0561230;Name=Msa0561230
chr4_1 mRNA 60683746 60692448 60683746 ID=Msa0561230-mRNA-1;Parent=Msa0561230;Name=Msa0561230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=270|0.88|0.9|1|0.88|0.8|10|298|962
chr4_1 exon 60683746 60684481 60683746 ID=Msa0561230-mRNA-1:exon:18984;Parent=Msa0561230-mRNA-1
chr4_1 exon 60685318 60685455 60685318 ID=Msa0561230-mRNA-1:exon:18983;Parent=Msa0561230-mRNA-1
chr4_1 exon 60686512 60686628 60686512 ID=Msa0561230-mRNA-1:exon:18982;Parent=Msa0561230-mRNA-1
chr4_1 exon 60686709 60686860 60686709 ID=Msa0561230-mRNA-1:exon:18981;Parent=Msa0561230-mRNA-1
chr4_1 exon 60686985 60687925 60686985 ID=Msa0561230-mRNA-1:exon:18980;Parent=Msa0561230-mRNA-1
chr4_1 exon 60688509 60688754 60688509 ID=Msa0561230-mRNA-1:exon:18979;Parent=Msa0561230-mRNA-1
chr4_1 exon 60688834 60689327 60688834 ID=Msa0561230-mRNA-1:exon:18978;Parent=Msa0561230-mRNA-1
chr4_1 exon 60690200 60690289 60690200 ID=Msa0561230-mRNA-1:exon:18977;Parent=Msa0561230-mRNA-1
chr4_1 exon 60691267 60691568 60691267 ID=Msa0561230-mRNA-1:exon:18976;Parent=Msa0561230-mRNA-1
chr4_1 exon 60692208 60692448 60692208 ID=Msa0561230-mRNA-1:exon:18975;Parent=Msa0561230-mRNA-1
chr4_1 five_prime_UTR 60692208 60692448 60692208 ID=Msa0561230-mRNA-1:five_prime_utr;Parent=Msa0561230-mRNA-1
chr4_1 five_prime_UTR 60691540 60691568 60691540 ID=Msa0561230-mRNA-1:five_prime_utr;Parent=Msa0561230-mRNA-1
chr4_1 CDS 60691267 60691539 60691267 ID=Msa0561230-mRNA-1:cds;Parent=Msa0561230-mRNA-1
chr4_1 CDS 60690200 60690289 60690200 ID=Msa0561230-mRNA-1:cds;Parent=Msa0561230-mRNA-1
chr4_1 CDS 60688834 60689327 60688834 ID=Msa0561230-mRNA-1:cds;Parent=Msa0561230-mRNA-1
chr4_1 CDS 60688509 60688754 60688509 ID=Msa0561230-mRNA-1:cds;Parent=Msa0561230-mRNA-1
chr4_1 CDS 60686985 60687925 60686985 ID=Msa0561230-mRNA-1:cds;Parent=Msa0561230-mRNA-1
chr4_1 CDS 60686709 60686860 60686709 ID=Msa0561230-mRNA-1:cds;Parent=Msa0561230-mRNA-1
chr4_1 CDS 60686512 60686628 60686512 ID=Msa0561230-mRNA-1:cds;Parent=Msa0561230-mRNA-1
chr4_1 CDS 60685318 60685455 60685318 ID=Msa0561230-mRNA-1:cds;Parent=Msa0561230-mRNA-1
chr4_1 CDS 60684044 60684481 60684044 ID=Msa0561230-mRNA-1:cds;Parent=Msa0561230-mRNA-1
chr4_1 three_prime_UTR 60683746 60684043 60683746 ID=Msa0561230-mRNA-1:three_prime_utr;Parent=Msa0561230-mRNA-1
Gene Sequence

>Msa0561230

ATGGCAACAAAAGAACGTCCTGTGGCTGCGCCGAAAAAACCAGCCCTTACACCGAAGGCTATAATACACCAAAAGTTTGGTAAAAATGCTTGCTATGTGGTAGAGGAAGTGAAAGAGGTCTCTCAAAATGAATGTCCAGGGTTAAGCATTCCTCAGACGAGGCCATCTCTTTACCGTTGCACACTGCAGCTTCCAGAACTTACAGTTGTGACAAGGACATTTAAGAAAAAGAAGGATGCAGAGCAATCTGCTGCGGAGATGGCTATAGAGAAGATTGGTATCATTACAGAGACTGCTGATCTTACTCCTCAGGATGCACAAGAAAGTTTAGTTGCTCGAATCGCCTATATCTTTTCAGAAAAATCTGATACCATTTTTCTTTGCCATTCATCACCTATACAGTTTCTTATATCTGATCATCCGCTCAGTGGTCACATTCGGGCTAGTTTGAGGACGAAGAGCGATCATTGTGGATCAATTCCTATTTCTGTCATTGCTGTCTGTGATGCAAAGATTTCTAGTTTGTGTAAATGTATTAATCCTGAGGTGGAGTCAAATCCGTTTTTGGTCCTTCCATATATAGTAAGGGCTGCTACAAAGTTAAATGAGTTTCTTGTTACATCTGAACAACATATCTGGATTAGAAAGCTGAGTCCATATCCACAAGATATTATAGAGTCGTTAATGGAAGAGGGTGATTCACAAGAATGCATTCAGGTTGAGGCCATACGCATTCCTGGTTCAATGGAAAAACATGTTGAAGCTGTGACTCTCTGTATGTCTTTAAGAGAGTACTACCTTGATATCATTGCAAATGAACTTGGGTTAGAAGATGGGGTCAATGTTCTGATTTCAAGGAATATAGGCAAAGCTTCTTCAGAGACCAGACTGTTCTTTGCTGCTCGACAATCATATCTACTGGATCGGTCTTTTGTATCGGGAAATGGAAAAGAAACCATTCATTTTGAAGGATCTCTAAATGCAAGGGCAAGATACTTGTCTGGGCAAGATATAGTTGGTGATGCAATCTTAGCATGCATCGGATATACACGGAAATCTAGAGATCTTTTCTACGAGGATGTAACTGTTCGGTTATATTACAGGATGCTTCTAGGGAAGACTCCCGGGGGAATTTACAAATTATCCAGAGAGGCACTACTCACAGCTGAGTTGCCTTCAAGATTTACCACAAGAGTTAACTGGAGGGGTTCCCTTCCTAGGGATATTCTTTGTATGTTTTGTCGCCAGCATCGCCTGTCTGAACCTCTCTTTTCCATTATAAGTCATCCTCTCAAAATACCAACTGAATCATCAAAGTCATGTTTTAAGGCTGCAGGCTTGGGAACTGATGTGATTGAATGTGCCAACGGGGCCTCTGTAAATGGATGTCCAAAGCAATCAGATTCAGGGATGTTTAAATGTGAAATAAAGTTGCTTTCTCGGTGTGCGGAAGTAATACTCTTTTGTTCCCCTGAGGATTGTTATAGGAAGCAGAATGATGCTATTCAGAATGCCTCATTGAAACTTCTATCATGGCTGAACAAGTATTTTAATAGTGTAACTGCTCCTTTTGAACGGCTCTATGAGACTGCAGGGAACTTCAGCATCCACGTTTTTTCCAAAAACCTTTTCAGAGAGATTGTAATTGGTCAATCCATTCAGAATGGCCATCTTTATGCAATGCAGTGTAATAAATCACATGAGCCAATGTGTGCAAATTCATTACAAGACATGTTAGTAAATGGCGTTTGCAGCTTAAAGATTGAAGGTCCAGACTCTGGTGTCTGTCCATGCAATGGATCTTTACCTTGTATTAGTTATTCAGTATCTTTGGTTGTGGAGGGTGAAAATATGAAAGAAGTTATTGAATCTTGTAATGAGTTTGAGTTTGAGATTGGGGTTGGTGCTGTGATTTCATTCATTGAGGAGGTTGTGATGCAGATGTCTGTTGGCCAGTATGCTTATTTCAACACGAACTTGCTCAATTCTGATTTGATTTTTGCTTCAGCTGGTGATTCAGCCATAATGCCGTCCTTATCTTCTAAGGCCTGCTGTGTGGAGTATGAAATAAGTTTGACCAAAGTTGCAGAACCTCCAGAGGAAAGAATGGAGCAGGCTCTTTTTAGCCCTCCACTTTCGAAGCAACGAGTGGAATTTGCAGTGCAACACATTTTAGAATCACATGCTACTACTTTGCTTGATTTTGGATGTGGATCTGGAAGCTTGCTGGAAGCATTGCTAAATTACACAACTTCGCTGGAGAAAATTGCTGGTGTTGATATTTCACAAAAGGGTCTTACACGGGCTGCAAAGGTACTGAATTCAAAATTAGATGCAAATCCAGATGCTGGTGTGACAAGAACTGACATAAAGTCAGTTATTCTTTACGAAGGTTCAATTACAAATTTTGATTCCAGGTTGCATGGGTTTGATATTGGTACTTGTTTAGAGGTGATTGAACATATGGATGAAGATCAAGCTTGTCTCTTTGGGGATGTGGCATTAAGTCGTTTTTCTCCAAAGATTCTTATTGTTTCTACACCAAATTTTGAATACAATGTAGTGCTACAGAAGTCGAATCCCCCTACCCAAGAACAAGAAGAATTGGACGGGCAAACCCTCTTACAGTCATGCAAGTTTCGCAATAATGACCACAAATTTGAGTGGACCAGAGAACAGTTCAACCAGTGGGCATCTGACTTGGCTGCACGGCACAATTATAATGTGGAGTTTAGTGGGGTTGGTGGTTTTGCTGATGTCGAACCAGGTTTTGCTTCACAGATTGCTGTGTTCAAAAGAGAATGGAGTCATGAAGATGAAGTCCAGACGCATACTGATATAGATAGCCATTATAATGTAATATGGGAATGGAATAGCAAAAAGAAATAA

Protein sequence

>Msa0561230

MATKERPVAAPKKPALTPKAIIHQKFGKNACYVVEEVKEVSQNECPGLSIPQTRPSLYRCTLQLPELTVVTRTFKKKKDAEQSAAEMAIEKIGIITETADLTPQDAQESLVARIAYIFSEKSDTIFLCHSSPIQFLISDHPLSGHIRASLRTKSDHCGSIPISVIAVCDAKISSLCKCINPEVESNPFLVLPYIVRAATKLNEFLVTSEQHIWIRKLSPYPQDIIESLMEEGDSQECIQVEAIRIPGSMEKHVEAVTLCMSLREYYLDIIANELGLEDGVNVLISRNIGKASSETRLFFAARQSYLLDRSFVSGNGKETIHFEGSLNARARYLSGQDIVGDAILACIGYTRKSRDLFYEDVTVRLYYRMLLGKTPGGIYKLSREALLTAELPSRFTTRVNWRGSLPRDILCMFCRQHRLSEPLFSIISHPLKIPTESSKSCFKAAGLGTDVIECANGASVNGCPKQSDSGMFKCEIKLLSRCAEVILFCSPEDCYRKQNDAIQNASLKLLSWLNKYFNSVTAPFERLYETAGNFSIHVFSKNLFREIVIGQSIQNGHLYAMQCNKSHEPMCANSLQDMLVNGVCSLKIEGPDSGVCPCNGSLPCISYSVSLVVEGENMKEVIESCNEFEFEIGVGAVISFIEEVVMQMSVGQYAYFNTNLLNSDLIFASAGDSAIMPSLSSKACCVEYEISLTKVAEPPEERMEQALFSPPLSKQRVEFAVQHILESHATTLLDFGCGSGSLLEALLNYTTSLEKIAGVDISQKGLTRAAKVLNSKLDANPDAGVTRTDIKSVILYEGSITNFDSRLHGFDIGTCLEVIEHMDEDQACLFGDVALSRFSPKILIVSTPNFEYNVVLQKSNPPTQEQEELDGQTLLQSCKFRNNDHKFEWTREQFNQWASDLAARHNYNVEFSGVGGFADVEPGFASQIAVFKREWSHEDEVQTHTDIDSHYNVIWEWNSKKK*