Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838480 | XP_003612249.1 | 98.962 | 289 | 3 | 0 | 1 | 289 | 1 | 289 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838480 | sp|F4JZ24|P4H10_ARATH | 76.042 | 288 | 68 | 1 | 1 | 288 | 2 | 288 | 2.37e-166 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838480 | G7JYR0 | 98.962 | 289 | 3 | 0 | 1 | 289 | 1 | 289 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0712860 | Msa0838480 | 0.824108 | 9.649582e-54 | -8.615850e-47 |
| Msa0759230 | Msa0838480 | 0.850602 | 1.527178e-60 | -8.615850e-47 |
| Msa0800480 | Msa0838480 | 0.825355 | 4.904715e-54 | -8.615850e-47 |
| Msa0838480 | Msa1260220 | 0.806319 | 8.713049e-50 | -8.615850e-47 |
| Msa0838480 | Msa1407990 | 0.821932 | 3.104332e-53 | -8.615850e-47 |
| Msa0379240 | Msa0838480 | 0.806612 | 7.560381e-50 | -8.615850e-47 |
| Msa0280370 | Msa0838480 | 0.804432 | 2.166885e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838480 | MtrunA17_Chr5g0406051 | 98.962 | 289 | 3 | 0 | 1 | 289 | 1 | 289 | 0.0 | 593 |
| Msa0838480 | MtrunA17_Chr8g0371221 | 68.729 | 291 | 76 | 4 | 1 | 289 | 1 | 278 | 4.92e-142 | 400 |
| Msa0838480 | MtrunA17_Chr3g0143381 | 65.052 | 289 | 92 | 2 | 1 | 289 | 1 | 280 | 5.52e-142 | 400 |
| Msa0838480 | MtrunA17_Chr8g0371251 | 64.236 | 288 | 93 | 2 | 1 | 288 | 1 | 278 | 4.99e-136 | 385 |
| Msa0838480 | MtrunA17_Chr8g0371281 | 64.111 | 287 | 91 | 2 | 1 | 287 | 1 | 275 | 1.71e-133 | 379 |
| Msa0838480 | MtrunA17_Chr8g0371231 | 71.500 | 200 | 57 | 0 | 88 | 287 | 2 | 201 | 3.72e-106 | 307 |
| Msa0838480 | MtrunA17_Chr8g0371241 | 70.857 | 175 | 34 | 2 | 110 | 284 | 1 | 158 | 2.11e-85 | 253 |
| Msa0838480 | MtrunA17_Chr6g0452281 | 56.398 | 211 | 91 | 1 | 78 | 288 | 51 | 260 | 3.20e-84 | 255 |
| Msa0838480 | MtrunA17_Chr2g0286811 | 56.019 | 216 | 87 | 2 | 78 | 287 | 40 | 253 | 2.88e-82 | 250 |
| Msa0838480 | MtrunA17_Chr3g0143361 | 65.922 | 179 | 55 | 1 | 110 | 288 | 1 | 173 | 1.53e-80 | 242 |
| Msa0838480 | MtrunA17_Chr4g0066531 | 52.778 | 216 | 92 | 2 | 78 | 287 | 37 | 248 | 9.90e-78 | 238 |
| Msa0838480 | MtrunA17_Chr1g0213811 | 50.661 | 227 | 96 | 4 | 65 | 283 | 58 | 276 | 2.07e-69 | 216 |
| Msa0838480 | MtrunA17_Chr3g0143371 | 63.694 | 157 | 52 | 1 | 110 | 266 | 1 | 152 | 1.83e-66 | 204 |
| Msa0838480 | MtrunA17_Chr3g0143351 | 57.692 | 182 | 64 | 3 | 110 | 288 | 1 | 172 | 2.24e-61 | 192 |
| Msa0838480 | MtrunA17_Chr4g0053801 | 48.095 | 210 | 98 | 7 | 79 | 283 | 86 | 289 | 2.07e-60 | 194 |
| Msa0838480 | MtrunA17_Chr5g0401481 | 41.518 | 224 | 108 | 5 | 79 | 283 | 84 | 303 | 1.35e-49 | 166 |
| Msa0838480 | MtrunA17_Chr6g0470551 | 29.658 | 263 | 153 | 9 | 28 | 284 | 4 | 240 | 1.72e-31 | 119 |
| Msa0838480 | MtrunA17_Chr3g0098671 | 63.235 | 68 | 23 | 2 | 160 | 226 | 31 | 97 | 2.15e-19 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838480 | AT5G66060.1 | 76.042 | 288 | 68 | 1 | 1 | 288 | 2 | 288 | 2.41e-167 | 465 |
| Msa0838480 | AT1G20270.1 | 70.486 | 288 | 83 | 2 | 1 | 288 | 1 | 286 | 4.42e-155 | 434 |
| Msa0838480 | AT2G17720.1 | 70.775 | 284 | 83 | 0 | 5 | 288 | 7 | 290 | 7.21e-143 | 404 |
| Msa0838480 | AT4G35810.1 | 71.937 | 253 | 68 | 1 | 38 | 287 | 37 | 289 | 2.92e-137 | 389 |
| Msa0838480 | AT4G35810.2 | 71.937 | 253 | 68 | 1 | 38 | 287 | 37 | 289 | 2.92e-137 | 389 |
| Msa0838480 | AT5G66060.2 | 71.721 | 244 | 66 | 2 | 1 | 244 | 2 | 242 | 2.99e-127 | 362 |
| Msa0838480 | AT1G20270.2 | 66.010 | 203 | 67 | 2 | 1 | 203 | 1 | 201 | 1.27e-96 | 283 |
| Msa0838480 | AT1G20270.3 | 66.010 | 203 | 67 | 2 | 1 | 203 | 1 | 201 | 1.27e-96 | 283 |
| Msa0838480 | AT3G28480.1 | 46.038 | 265 | 139 | 3 | 24 | 288 | 5 | 265 | 1.38e-81 | 249 |
| Msa0838480 | AT5G18900.1 | 54.717 | 212 | 94 | 1 | 78 | 287 | 37 | 248 | 3.41e-80 | 244 |
| Msa0838480 | AT3G06300.1 | 54.930 | 213 | 92 | 2 | 78 | 287 | 38 | 249 | 1.02e-78 | 241 |
| Msa0838480 | AT3G28490.1 | 53.846 | 208 | 94 | 2 | 81 | 287 | 35 | 241 | 2.69e-76 | 234 |
| Msa0838480 | AT2G43080.1 | 54.502 | 211 | 80 | 4 | 79 | 283 | 78 | 278 | 1.27e-71 | 222 |
| Msa0838480 | AT4G35820.1 | 56.500 | 200 | 57 | 3 | 75 | 266 | 85 | 262 | 2.79e-71 | 221 |
| Msa0838480 | AT3G28480.2 | 43.223 | 273 | 143 | 5 | 24 | 288 | 5 | 273 | 5.66e-71 | 222 |
| Msa0838480 | AT4G33910.1 | 39.384 | 292 | 150 | 10 | 7 | 283 | 3 | 282 | 3.78e-56 | 183 |
| Msa0838480 | AT2G23096.1 | 35.424 | 271 | 165 | 5 | 20 | 287 | 10 | 273 | 7.01e-48 | 161 |
| Msa0838480 | AT4G25600.1 | 32.178 | 202 | 111 | 5 | 81 | 282 | 62 | 237 | 2.58e-25 | 102 |
| Msa0838480 | AT2G43080.2 | 52.041 | 98 | 45 | 1 | 79 | 174 | 78 | 175 | 3.36e-25 | 99.8 |
| Msa0838480 | AT4G25600.3 | 31.472 | 197 | 109 | 5 | 86 | 282 | 6 | 176 | 1.48e-22 | 93.6 |
| Msa0838480 | AT4G25600.4 | 31.472 | 197 | 109 | 5 | 86 | 282 | 3 | 173 | 1.55e-22 | 93.6 |
| Msa0838480 | AT4G25600.2 | 31.472 | 197 | 109 | 5 | 86 | 282 | 15 | 185 | 1.90e-22 | 93.6 |
Find 83 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACGAGCTCTGGAACATTTC+TGG | 0.228707 | 5_4:-12868793 | Msa0838480:CDS |
| GGTGGTTGTCCGGTAATTAA+AGG | 0.264632 | 5_4:-12867843 | Msa0838480:CDS |
| GGTATACTTGTTACATCTAT+TGG | 0.280373 | 5_4:+12866622 | None:intergenic |
| CACTTATTTCCTTTAATTAC+CGG | 0.297860 | 5_4:+12867834 | None:intergenic |
| GTTACCTATCGACGGTGTTA+TGG | 0.331035 | 5_4:+12871037 | None:intergenic |
| AGTAAAGCATCACCTCTCTT+TGG | 0.342180 | 5_4:+12868053 | None:intergenic |
| GCTGAGACTTTGCACATGAT+TGG | 0.347183 | 5_4:+12866810 | None:intergenic |
| CTCTGGAACATTTCTGGCCC+GGG | 0.397121 | 5_4:-12868787 | Msa0838480:CDS |
| GAGGTAAGATCGTTGGGTTT+AGG | 0.404374 | 5_4:+12871066 | None:intergenic |
| GATGAATATAACACAAAGAA+TGG | 0.412374 | 5_4:-12868320 | Msa0838480:CDS |
| TCTGTTGTTGCCCATTTATG+AGG | 0.416156 | 5_4:-12866547 | Msa0838480:three_prime_UTR |
| CTGTTGTTGCCCATTTATGA+GGG | 0.419463 | 5_4:-12866546 | Msa0838480:three_prime_UTR |
| ATGAATATAACACAAAGAAT+GGG | 0.423938 | 5_4:-12868319 | Msa0838480:CDS |
| TTCATTGACGCGGATCCATT+TGG | 0.424011 | 5_4:+12867803 | None:intergenic |
| GTAGAGGGTGGAAGAAAGAA+TGG | 0.429971 | 5_4:+12871338 | None:intergenic |
| AAACGTTTGCAGCGTGATGC+GGG | 0.430352 | 5_4:-12866753 | Msa0838480:three_prime_UTR |
| CAAGTTCTACATTATGAAGT+TGG | 0.432869 | 5_4:-12868377 | Msa0838480:CDS |
| TGTAGAGTGCGTACGAGCTC+TGG | 0.433588 | 5_4:-12868804 | Msa0838480:intron |
| ATACTGTACAATGGAGCTTA+AGG | 0.435418 | 5_4:-12866785 | Msa0838480:three_prime_UTR |
| ATTAGAAATGATGATGAAGA+AGG | 0.459154 | 5_4:-12870940 | Msa0838480:intron |
| ACTTGAGTATATGTTACAAT+AGG | 0.464471 | 5_4:-12867774 | Msa0838480:intron |
| GCTCTGGAACATTTCTGGCC+CGG | 0.465029 | 5_4:-12868788 | Msa0838480:CDS |
| ATAACTTTCAGGTGGTTGTC+CGG | 0.466448 | 5_4:-12867853 | Msa0838480:intron |
| AAATGATGATGAAGAAGGTA+AGG | 0.476008 | 5_4:-12870935 | Msa0838480:CDS |
| CAGATATTCACATTCCTCCT+TGG | 0.476063 | 5_4:+12869018 | None:intergenic |
| AAACGAGAAGAATGAGGATA+AGG | 0.480852 | 5_4:+12871127 | None:intergenic |
| ACAGTTGTTGATAGCGAGAC+TGG | 0.480980 | 5_4:-12868962 | Msa0838480:CDS |
| ACAATGGAGGTAAGATCGTT+GGG | 0.491811 | 5_4:+12871060 | None:intergenic |
| GACAGTGTTCCTTGCTGCTA+AGG | 0.494647 | 5_4:-12868144 | Msa0838480:CDS |
| GACAATGGAGGTAAGATCGT+TGG | 0.498696 | 5_4:+12871059 | None:intergenic |
| ACTGTTGACTTGTGCATGCT+CGG | 0.501373 | 5_4:+12868980 | None:intergenic |
| GATGCATCTAAAGTTGCATC+CGG | 0.502828 | 5_4:+12868014 | None:intergenic |
| TATAATGAGCTTTCTGATTG+TGG | 0.504044 | 5_4:-12868098 | Msa0838480:CDS |
| ATAAGTGGTCAAGTACCAAA+TGG | 0.506402 | 5_4:-12867818 | Msa0838480:CDS |
| TCACAATCTTATCACGTCCC+CGG | 0.514039 | 5_4:+12868769 | None:intergenic |
| AGTGGGTTGAAGTTGTATCA+TGG | 0.519666 | 5_4:-12870906 | Msa0838480:CDS |
| TTAGATGCATCAAGCTTGCA+TGG | 0.521772 | 5_4:-12868002 | Msa0838480:intron |
| TACAGTACAGATGTTGAAGA+AGG | 0.524814 | 5_4:-12868173 | Msa0838480:intron |
| ATAATGAGCTTTCTGATTGT+GGG | 0.530607 | 5_4:-12868097 | Msa0838480:CDS |
| AAGAAGGTAAGGGTGAACAG+TGG | 0.530724 | 5_4:-12870924 | Msa0838480:CDS |
| TTGTGATACACAAAAGCTCT+AGG | 0.533206 | 5_4:+12870880 | None:intergenic |
| AACAAATAACAACGATACAC+GGG | 0.534389 | 5_4:+12866574 | None:intergenic |
| ACAGTGTTCCTTGCTGCTAA+GGG | 0.535542 | 5_4:-12868143 | Msa0838480:CDS |
| CACAATCTTATCACGTCCCC+GGG | 0.536811 | 5_4:+12868770 | None:intergenic |
| CTGGAAAGAGCAAAGACAGC+AGG | 0.539433 | 5_4:-12868943 | Msa0838480:intron |
| GTTGTTGCCCATTTATGAGG+GGG | 0.550050 | 5_4:-12866544 | Msa0838480:three_prime_UTR |
| GTGGGTTGAAGTTGTATCAT+GGG | 0.551409 | 5_4:-12870905 | Msa0838480:CDS |
| GAAACGTTTGCAGCGTGATG+CGG | 0.564649 | 5_4:-12866754 | Msa0838480:three_prime_UTR |
| AAACAAATAACAACGATACA+CGG | 0.564734 | 5_4:+12866573 | None:intergenic |
| AGAAGGTAAGGGTGAACAGT+GGG | 0.565306 | 5_4:-12870923 | Msa0838480:CDS |
| AATGGAGCTTAAGGTCTCAA+AGG | 0.569975 | 5_4:-12866776 | Msa0838480:three_prime_UTR |
| ATACTGTTACGACTAGGTAG+AGG | 0.575003 | 5_4:+12871322 | None:intergenic |
| ACAGTACAGATGTTGAAGAA+GGG | 0.576370 | 5_4:-12868172 | Msa0838480:intron |
| TGAAATTCCCCTTAGCAGCA+AGG | 0.587162 | 5_4:+12868135 | None:intergenic |
| TGTTGTTGCCCATTTATGAG+GGG | 0.594436 | 5_4:-12866545 | Msa0838480:three_prime_UTR |
| AATGATGATGAAGAAGGTAA+GGG | 0.600100 | 5_4:-12870934 | Msa0838480:CDS |
| TTCCGAAAACGAGAAGAATG+AGG | 0.600315 | 5_4:+12871121 | None:intergenic |
| CGGTAATTAAAGGAAATAAG+TGG | 0.603669 | 5_4:-12867833 | Msa0838480:CDS |
| AACGTTTGCAGCGTGATGCG+GGG | 0.604419 | 5_4:-12866752 | Msa0838480:three_prime_UTR |
| CAGTACAGATGTTGAAGAAG+GGG | 0.604680 | 5_4:-12868171 | Msa0838480:CDS |
| TCTGGAACATTTCTGGCCCG+GGG | 0.604972 | 5_4:-12868786 | Msa0838480:CDS |
| ATACACGGGGCAAATGAGCT+CGG | 0.605320 | 5_4:+12866588 | None:intergenic |
| TGAATATAACACAAAGAATG+GGG | 0.607097 | 5_4:-12868318 | Msa0838480:CDS |
| GATTGGAAGAAGGAATGGAG+AGG | 0.608811 | 5_4:+12871097 | None:intergenic |
| CTTTCAATTAAGCCAAAGAG+AGG | 0.612559 | 5_4:-12868065 | Msa0838480:CDS |
| CAATATACAGAGCACGGTGA+AGG | 0.613394 | 5_4:-12868404 | Msa0838480:intron |
| ATCGACGGTGTTATGGACAA+TGG | 0.613757 | 5_4:+12871044 | None:intergenic |
| CAGTGTTCCTTGCTGCTAAG+GGG | 0.624902 | 5_4:-12868142 | Msa0838480:CDS |
| TTGTCCATAACACCGTCGAT+AGG | 0.625451 | 5_4:-12871041 | Msa0838480:intron |
| TACTGTTACGACTAGGTAGA+GGG | 0.634805 | 5_4:+12871323 | None:intergenic |
| TCTCAGCTAATACTGTACAA+TGG | 0.637092 | 5_4:-12866794 | Msa0838480:three_prime_UTR |
| TCAAGAAAGTAGTCATAGTG+AGG | 0.653721 | 5_4:+12868341 | None:intergenic |
| GAATATAACACAAAGAATGG+GGG | 0.666678 | 5_4:-12868317 | Msa0838480:CDS |
| TTTGTAATACTGTTACGACT+AGG | 0.667886 | 5_4:+12871316 | None:intergenic |
| GGAATTTCAGTAATGTGCCG+TGG | 0.673959 | 5_4:-12868121 | Msa0838480:CDS |
| ACAGAAACGTTACCTATCGA+CGG | 0.675054 | 5_4:+12871029 | None:intergenic |
| AGTACAGATGTTGAAGAAGG+GGG | 0.685290 | 5_4:-12868170 | Msa0838480:CDS |
| GGGGACGTGATAAGATTGTG+AGG | 0.693350 | 5_4:-12868767 | Msa0838480:CDS |
| ACAAATAACAACGATACACG+GGG | 0.699154 | 5_4:+12866575 | None:intergenic |
| TGTTACGACTAGGTAGAGGG+TGG | 0.700244 | 5_4:+12871326 | None:intergenic |
| GACGGTGTTATGGACAATGG+AGG | 0.705646 | 5_4:+12871047 | None:intergenic |
| TCAGAAAGCTCATTATACCA+CGG | 0.716313 | 5_4:+12868104 | None:intergenic |
| ATAATCTGAGTAGACCAAGG+AGG | 0.746271 | 5_4:-12869032 | Msa0838480:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATGCTATTTATATATTA+AGG | - | chr5_4:12867321-12867340 | Msa0838480:intron | 10.0% |
| !!! | ATATGCTATTTATATATTAA+GGG | - | chr5_4:12867322-12867341 | Msa0838480:intron | 10.0% |
| !!! | ATTATTTTTGTAAGTTATAT+TGG | + | chr5_4:12867474-12867493 | None:intergenic | 10.0% |
| !!! | AAAAAAAGAAATTAATTTTG+TGG | - | chr5_4:12868538-12868557 | Msa0838480:intron | 10.0% |
| !!! | AAAAAAGAAATTAATTTTGT+GGG | - | chr5_4:12868539-12868558 | Msa0838480:intron | 10.0% |
| !!! | TATTAAATTACTTTTTTGAA+GGG | + | chr5_4:12870457-12870476 | None:intergenic | 10.0% |
| !!! | ATATTAAATTACTTTTTTGA+AGG | + | chr5_4:12870458-12870477 | None:intergenic | 10.0% |
| !!! | ATAATTTATTTGAGTTTTTT+TGG | - | chr5_4:12870605-12870624 | Msa0838480:intron | 10.0% |
| !! | ATCATTAACAAAAAAAAAAG+CGG | + | chr5_4:12866933-12866952 | None:intergenic | 15.0% |
| !!! | ATGAACTATATATATGTTTT+TGG | - | chr5_4:12867156-12867175 | Msa0838480:intron | 15.0% |
| !!! | TTATTCAAGTTTATCTTTTA+GGG | + | chr5_4:12867593-12867612 | None:intergenic | 15.0% |
| !!! | ATTATTCAAGTTTATCTTTT+AGG | + | chr5_4:12867594-12867613 | None:intergenic | 15.0% |
| !!! | AAGTTAGTTTTTTGTTTTAA+AGG | - | chr5_4:12868036-12868055 | Msa0838480:CDS | 15.0% |
| !!! | AAAAAAAAGAGTTAATTTTG+TGG | - | chr5_4:12868338-12868357 | Msa0838480:CDS | 15.0% |
| !!! | AAAAAAAGAGTTAATTTTGT+GGG | - | chr5_4:12868339-12868358 | Msa0838480:CDS | 15.0% |
| !!! | AAAAAGAAATTAATTTTGTG+GGG | - | chr5_4:12868540-12868559 | Msa0838480:intron | 15.0% |
| !! | TAATATTACACAATCATTAA+GGG | - | chr5_4:12868582-12868601 | Msa0838480:intron | 15.0% |
| !!! | AAAAAGTATATATAATAGGT+GGG | + | chr5_4:12869224-12869243 | None:intergenic | 15.0% |
| !!! | AAAAAAGTATATATAATAGG+TGG | + | chr5_4:12869225-12869244 | None:intergenic | 15.0% |
| !!! | ATTAAATTACTTTTTTGAAG+GGG | + | chr5_4:12870456-12870475 | None:intergenic | 15.0% |
| !!! | GTTAATTTTTTTTCATACAA+GGG | + | chr5_4:12870791-12870810 | None:intergenic | 15.0% |
| !! | ATAAGTTATTACTGTAATTA+TGG | + | chr5_4:12870824-12870843 | None:intergenic | 15.0% |
| !! | TACATATAAATGAAAAAGAT+GGG | + | chr5_4:12871231-12871250 | None:intergenic | 15.0% |
| !! | TATGAATCGCATTAATAAAA+TGG | + | chr5_4:12867121-12867140 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTGTGAAAATGTT+TGG | - | chr5_4:12867382-12867401 | Msa0838480:intron | 20.0% |
| !! | CTTGAATAATTGCTTATATA+AGG | - | chr5_4:12867604-12867623 | Msa0838480:intron | 20.0% |
| !!! | TATATTTCATAAGCTGTTTT+CGG | - | chr5_4:12867704-12867723 | Msa0838480:intron | 20.0% |
| !! | AAAAAACACTATTCCAAATT+AGG | + | chr5_4:12868070-12868089 | None:intergenic | 20.0% |
| !! | GCATGAAATAGAATAAAAAT+TGG | - | chr5_4:12868205-12868224 | Msa0838480:intron | 20.0% |
| !! | TGAAATAGAATAAAAATTGG+CGG | - | chr5_4:12868208-12868227 | Msa0838480:intron | 20.0% |
| !!! | AAAAAAGAGTTAATTTTGTG+GGG | - | chr5_4:12868340-12868359 | Msa0838480:CDS | 20.0% |
| !! | CTAATATTACACAATCATTA+AGG | - | chr5_4:12868581-12868600 | Msa0838480:intron | 20.0% |
| !!! | AAAACTATTTGTGTTTTGAT+TGG | - | chr5_4:12868676-12868695 | Msa0838480:intron | 20.0% |
| !! | ACTAAATTCATATTCAAACA+TGG | + | chr5_4:12868753-12868772 | None:intergenic | 20.0% |
| !! | AGAAAGAAATATGTAAAGAT+GGG | + | chr5_4:12869086-12869105 | None:intergenic | 20.0% |
| !! | TAGAAAGAAATATGTAAAGA+TGG | + | chr5_4:12869087-12869106 | None:intergenic | 20.0% |
| !!! | AAAAGTATATATAATAGGTG+GGG | + | chr5_4:12869223-12869242 | None:intergenic | 20.0% |
| !! | TTACAAAAAGAGTTTATTTC+TGG | - | chr5_4:12869277-12869296 | Msa0838480:intron | 20.0% |
| !! | ATGAATATAACACAAAGAAT+GGG | - | chr5_4:12869594-12869613 | Msa0838480:intron | 20.0% |
| !!! | GTGTTTTTTTTCTTTCTTTA+AGG | - | chr5_4:12870349-12870368 | Msa0838480:intron | 20.0% |
| !!! | TTTTTTTTCTTTCTTTAAGG+TGG | - | chr5_4:12870352-12870371 | Msa0838480:intron | 20.0% |
| !!! | TTTTTTTCTTTCTTTAAGGT+GGG | - | chr5_4:12870353-12870372 | Msa0838480:intron | 20.0% |
| !!! | CGTTAATTTTTTTTCATACA+AGG | + | chr5_4:12870792-12870811 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGTTTTATAGCTT+AGG | - | chr5_4:12871192-12871211 | Msa0838480:CDS | 20.0% |
| !! | CTACATATAAATGAAAAAGA+TGG | + | chr5_4:12871232-12871251 | None:intergenic | 20.0% |
| ! | ATCTGAAAAAATTCAACAGA+TGG | + | chr5_4:12866650-12866669 | None:intergenic | 25.0% |
| !! | ATTAGAAATGATGATGAAGA+AGG | - | chr5_4:12866973-12866992 | Msa0838480:intron | 25.0% |
| !! | TTTTGTGTATCACAATTTTC+TGG | - | chr5_4:12867041-12867060 | Msa0838480:intron | 25.0% |
| !! | TTGTTTTCTCGTTATGTTTT+TGG | - | chr5_4:12867196-12867215 | Msa0838480:intron | 25.0% |
| !! | ATTTCTCTGTTTTACATGTT+TGG | - | chr5_4:12867257-12867276 | Msa0838480:intron | 25.0% |
| ! | TATAAGATGTTTATCCAAAC+AGG | - | chr5_4:12867567-12867586 | Msa0838480:intron | 25.0% |
| ! | AATAAGTTGTTTACACAAAC+AGG | - | chr5_4:12867970-12867989 | Msa0838480:intron | 25.0% |
| ! | ATAAGTTGTTTACACAAACA+GGG | - | chr5_4:12867971-12867990 | Msa0838480:intron | 25.0% |
| !! | TTCACATAACAAGAATTTTG+TGG | - | chr5_4:12868307-12868326 | Msa0838480:CDS | 25.0% |
| !! | TCACATAACAAGAATTTTGT+GGG | - | chr5_4:12868308-12868327 | Msa0838480:CDS | 25.0% |
| ! | TACACACTAATAATAGAAGT+AGG | - | chr5_4:12868388-12868407 | Msa0838480:CDS | 25.0% |
| ! | ACACACTAATAATAGAAGTA+GGG | - | chr5_4:12868389-12868408 | Msa0838480:CDS | 25.0% |
| !! | ACCTAACAAGTTAATTTTGT+GGG | - | chr5_4:12868505-12868524 | Msa0838480:intron | 25.0% |
| !!! | TTTTAATTACTTGTGGTTCT+TGG | - | chr5_4:12868607-12868626 | Msa0838480:intron | 25.0% |
| ! | CTAAGTAGATAGTTAAACAA+AGG | + | chr5_4:12868644-12868663 | None:intergenic | 25.0% |
| ! | ATTCAAACATGGAATTCAAA+CGG | + | chr5_4:12868742-12868761 | None:intergenic | 25.0% |
| ! | AATATGAATTTAGTGTGATG+TGG | - | chr5_4:12868759-12868778 | Msa0838480:CDS | 25.0% |
| ! | AATAAATATTAATGCTCCAC+AGG | + | chr5_4:12868809-12868828 | None:intergenic | 25.0% |
| ! | GAAAGAAATATGTAAAGATG+GGG | + | chr5_4:12869085-12869104 | None:intergenic | 25.0% |
| ! | TGTTAACTGAAAATATTCAG+TGG | + | chr5_4:12869402-12869421 | None:intergenic | 25.0% |
| ! | CATAATAAAAGAAAGCTAGA+TGG | + | chr5_4:12869428-12869447 | None:intergenic | 25.0% |
| !!! | CATCTAGCTTTCTTTTATTA+TGG | - | chr5_4:12869426-12869445 | Msa0838480:intron | 25.0% |
| ! | GATGAATATAACACAAAGAA+TGG | - | chr5_4:12869593-12869612 | Msa0838480:intron | 25.0% |
| ! | TGAATATAACACAAAGAATG+GGG | - | chr5_4:12869595-12869614 | Msa0838480:intron | 25.0% |
| ! | TTACTAACTTCAATTTGTCT+TGG | - | chr5_4:12869671-12869690 | Msa0838480:intron | 25.0% |
| ! | CACTTATTTCCTTTAATTAC+CGG | + | chr5_4:12870082-12870101 | None:intergenic | 25.0% |
| ! | ACTTGAGTATATGTTACAAT+AGG | - | chr5_4:12870139-12870158 | Msa0838480:intron | 25.0% |
| ! | TTATTACAACAATACAACAG+AGG | + | chr5_4:12870180-12870199 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTCTTTAAGGTG+GGG | - | chr5_4:12870354-12870373 | Msa0838480:intron | 25.0% |
| ! | TTACTTAAAACTGTAGATCT+AGG | - | chr5_4:12870560-12870579 | Msa0838480:intron | 25.0% |
| ! | TACTTAAAACTGTAGATCTA+GGG | - | chr5_4:12870561-12870580 | Msa0838480:intron | 25.0% |
| !!! | ATATTTAATTTGCTAGTTGC+TGG | - | chr5_4:12871017-12871036 | Msa0838480:intron | 25.0% |
| !!! | TGTTGATTGACTTATTTTTC+AGG | - | chr5_4:12871061-12871080 | Msa0838480:CDS | 25.0% |
| ! | AAACAAATAACAACGATACA+CGG | + | chr5_4:12871343-12871362 | None:intergenic | 25.0% |
| TTTGTAATACTGTTACGACT+AGG | + | chr5_4:12866600-12866619 | None:intergenic | 30.0% | |
| !!! | TTGAATTTTTTCAGATCTCG+TGG | - | chr5_4:12866654-12866673 | Msa0838480:three_prime_UTR | 30.0% |
| TCTGAAAAACTCAACAACAA+TGG | - | chr5_4:12866678-12866697 | Msa0838480:three_prime_UTR | 30.0% | |
| ! | AAATGATGATGAAGAAGGTA+AGG | - | chr5_4:12866978-12866997 | Msa0838480:intron | 30.0% |
| ! | AATGATGATGAAGAAGGTAA+GGG | - | chr5_4:12866979-12866998 | Msa0838480:intron | 30.0% |
| AGCATATAGATAAGCACTTA+TGG | + | chr5_4:12867309-12867328 | None:intergenic | 30.0% | |
| TTATATATTAAGGGTCGCTT+TGG | - | chr5_4:12867331-12867350 | Msa0838480:intron | 30.0% | |
| AGAACTTATGAAAACAGCTT+AGG | - | chr5_4:12867406-12867425 | Msa0838480:intron | 30.0% | |
| TAATCATGTGTGACATTGTT+TGG | - | chr5_4:12867656-12867675 | Msa0838480:intron | 30.0% | |
| AAGTTATCATGCTAAGCTTA+TGG | + | chr5_4:12867737-12867756 | None:intergenic | 30.0% | |
| GCTATATGCTTAAAAATAGC+AGG | - | chr5_4:12867842-12867861 | Msa0838480:CDS | 30.0% | |
| ATGTTGCATCCTATATGTTA+AGG | - | chr5_4:12868135-12868154 | Msa0838480:CDS | 30.0% | |
| TGTTGCATCCTATATGTTAA+GGG | - | chr5_4:12868136-12868155 | Msa0838480:CDS | 30.0% | |
| ! | AAACCTTGTTTATGCATATC+AGG | + | chr5_4:12868272-12868291 | None:intergenic | 30.0% |
| CACACTAATAATAGAAGTAG+GGG | - | chr5_4:12868390-12868409 | Msa0838480:CDS | 30.0% | |
| ACACTAATAATAGAAGTAGG+GGG | - | chr5_4:12868391-12868410 | Msa0838480:CDS | 30.0% | |
| ! | AACCTTATTTATGCCATATC+AGG | + | chr5_4:12868464-12868483 | None:intergenic | 30.0% |
| ! | CACCTAACAAGTTAATTTTG+TGG | - | chr5_4:12868504-12868523 | Msa0838480:intron | 30.0% |
| !! | ACCCACAAAATTAACTTGTT+AGG | + | chr5_4:12868509-12868528 | None:intergenic | 30.0% |
| !! | AAGGGTCTTTTAATTACTTG+TGG | - | chr5_4:12868600-12868619 | Msa0838480:intron | 30.0% |
| ATTGGTTAAATGATGCTTGA+TGG | - | chr5_4:12868694-12868713 | Msa0838480:intron | 30.0% | |
| TTCAAACATGGAATTCAAAC+GGG | + | chr5_4:12868741-12868760 | None:intergenic | 30.0% | |
| TTCAGCTAAACTTTAGTGAT+TGG | + | chr5_4:12868862-12868881 | None:intergenic | 30.0% | |
| ACACTTTAACAGAGAAAGAT+AGG | + | chr5_4:12869007-12869026 | None:intergenic | 30.0% | |
| !! | GACTTTACTTTTATTCCTGT+AGG | - | chr5_4:12869190-12869209 | Msa0838480:intron | 30.0% |
| CAAGTTCTACATTATGAAGT+TGG | - | chr5_4:12869536-12869555 | Msa0838480:intron | 30.0% | |
| GAATATAACACAAAGAATGG+GGG | - | chr5_4:12869596-12869615 | Msa0838480:intron | 30.0% | |
| TATAATGAGCTTTCTGATTG+TGG | - | chr5_4:12869815-12869834 | Msa0838480:intron | 30.0% | |
| ATAATGAGCTTTCTGATTGT+GGG | - | chr5_4:12869816-12869835 | Msa0838480:intron | 30.0% | |
| !! | CTGTTTTCTTGATAACTTTC+AGG | - | chr5_4:12870049-12870068 | Msa0838480:intron | 30.0% |
| !! | TTTTCTTGATAACTTTCAGG+TGG | - | chr5_4:12870052-12870071 | Msa0838480:intron | 30.0% |
| CGGTAATTAAAGGAAATAAG+TGG | - | chr5_4:12870080-12870099 | Msa0838480:intron | 30.0% | |
| !! | AAGTTTTGTATTCATTGACG+CGG | + | chr5_4:12870123-12870142 | None:intergenic | 30.0% |
| CAATCATTTAGCTAAGTATC+AGG | + | chr5_4:12870266-12870285 | None:intergenic | 30.0% | |
| TATCTGATATGTGATCCAAT+GGG | + | chr5_4:12870488-12870507 | None:intergenic | 30.0% | |
| ATATCTGATATGTGATCCAA+TGG | + | chr5_4:12870489-12870508 | None:intergenic | 30.0% | |
| ! | TGCACCTATTGTGTTTATTT+TGG | - | chr5_4:12870531-12870550 | Msa0838480:intron | 30.0% |
| GAAGCCAAAATAAACACAAT+AGG | + | chr5_4:12870538-12870557 | None:intergenic | 30.0% | |
| AATAAGTCAATCAACATGAG+AGG | + | chr5_4:12871057-12871076 | None:intergenic | 30.0% | |
| ! | GGTATACTTGTTACATCTAT+TGG | + | chr5_4:12871294-12871313 | None:intergenic | 30.0% |
| AACAAATAACAACGATACAC+GGG | + | chr5_4:12871342-12871361 | None:intergenic | 30.0% | |
| ! | GAAGATGATGATTTTCGTGA+TGG | + | chr5_4:12866727-12866746 | None:intergenic | 35.0% |
| AAACGAGAAGAATGAGGATA+AGG | + | chr5_4:12866789-12866808 | None:intergenic | 35.0% | |
| ! | ATCCTCATTCTTCTCGTTTT+CGG | - | chr5_4:12866790-12866809 | Msa0838480:three_prime_UTR | 35.0% |
| !!! | GTTTTGATTGGAAGAAGGAA+TGG | + | chr5_4:12866824-12866843 | None:intergenic | 35.0% |
| AGCGGAATCGAATGAAAAAA+CGG | + | chr5_4:12866915-12866934 | None:intergenic | 35.0% | |
| TTGTGATACACAAAAGCTCT+AGG | + | chr5_4:12867036-12867055 | None:intergenic | 35.0% | |
| !!! | TTTATCTTTTAGGGCCTGTT+TGG | + | chr5_4:12867584-12867603 | None:intergenic | 35.0% |
| AAAGGAAACACGTCCTAATT+TGG | - | chr5_4:12868054-12868073 | Msa0838480:CDS | 35.0% | |
| ! | CAATTTGTAGACTAGTCACA+CGG | + | chr5_4:12868093-12868112 | None:intergenic | 35.0% |
| !! | GTGTGACTAGTCTACAAATT+GGG | - | chr5_4:12868092-12868111 | Msa0838480:CDS | 35.0% |
| AGTCTACAAATTGGGAAAGA+AGG | - | chr5_4:12868100-12868119 | Msa0838480:CDS | 35.0% | |
| CATCCTATATGTTAAGGGTT+TGG | - | chr5_4:12868141-12868160 | Msa0838480:CDS | 35.0% | |
| GTACCAAACCCTTAACATAT+AGG | + | chr5_4:12868147-12868166 | None:intergenic | 35.0% | |
| GTTTAGTGCATACCAATGAA+AGG | - | chr5_4:12868230-12868249 | Msa0838480:intron | 35.0% | |
| TAGCCTGATATGCATAAACA+AGG | - | chr5_4:12868266-12868285 | Msa0838480:intron | 35.0% | |
| ! | TAATTTTGTGGGGTTGAGTT+AGG | - | chr5_4:12868350-12868369 | Msa0838480:CDS | 35.0% |
| AGCCTGATATGGCATAAATA+AGG | - | chr5_4:12868459-12868478 | Msa0838480:intron | 35.0% | |
| GTTAAATGATGCTTGATGGA+AGG | - | chr5_4:12868698-12868717 | Msa0838480:intron | 35.0% | |
| TCAAACATGGAATTCAAACG+GGG | + | chr5_4:12868740-12868759 | None:intergenic | 35.0% | |
| AAACTTTAGTGATTGGAAGG+TGG | + | chr5_4:12868855-12868874 | None:intergenic | 35.0% | |
| GCTAAACTTTAGTGATTGGA+AGG | + | chr5_4:12868858-12868877 | None:intergenic | 35.0% | |
| TGAATAATCTGAGTAGACCA+AGG | - | chr5_4:12868878-12868897 | Msa0838480:intron | 35.0% | |
| !! | GTGTCCTCTGAAATTGAAAA+TGG | - | chr5_4:12869023-12869042 | Msa0838480:intron | 35.0% |
| ! | GCAACCATTTTCAATTTCAG+AGG | + | chr5_4:12869030-12869049 | None:intergenic | 35.0% |
| !! | AGTGAGAACTTTTGAGTAGT+TGG | - | chr5_4:12869356-12869375 | Msa0838480:intron | 35.0% |
| TCAAGAAAGTAGTCATAGTG+AGG | + | chr5_4:12869575-12869594 | None:intergenic | 35.0% | |
| TACAGTACAGATGTTGAAGA+AGG | - | chr5_4:12869740-12869759 | Msa0838480:intron | 35.0% | |
| ACAGTACAGATGTTGAAGAA+GGG | - | chr5_4:12869741-12869760 | Msa0838480:intron | 35.0% | |
| TCAGAAAGCTCATTATACCA+CGG | + | chr5_4:12869812-12869831 | None:intergenic | 35.0% | |
| CTTTCTGATTGTGGGAAAAA+AGG | - | chr5_4:12869824-12869843 | Msa0838480:intron | 35.0% | |
| CTTTCAATTAAGCCAAAGAG+AGG | - | chr5_4:12869848-12869867 | Msa0838480:intron | 35.0% | |
| ATAAGTGGTCAAGTACCAAA+TGG | - | chr5_4:12870095-12870114 | Msa0838480:intron | 35.0% | |
| TTACAACAATACAACAGAGG+CGG | + | chr5_4:12870177-12870196 | None:intergenic | 35.0% | |
| !! | TCATCACAATAGCTTGCTAT+TGG | + | chr5_4:12870428-12870447 | None:intergenic | 35.0% |
| !!! | ATTACTTTTTTGAAGGGGAG+AGG | + | chr5_4:12870451-12870470 | None:intergenic | 35.0% |
| TTTAATATCGTGTGACCCAT+TGG | - | chr5_4:12870470-12870489 | Msa0838480:intron | 35.0% | |
| GCTTATGACATGTGTATAAG+CGG | - | chr5_4:12870723-12870742 | Msa0838480:intron | 35.0% | |
| !! | GGGAAGTGCTTATCATATAA+GGG | + | chr5_4:12870854-12870873 | None:intergenic | 35.0% |
| !! | TGGGAAGTGCTTATCATATA+AGG | + | chr5_4:12870855-12870874 | None:intergenic | 35.0% |
| TTCCCAAAATGTGTTTGTGT+GGG | - | chr5_4:12870869-12870888 | Msa0838480:intron | 35.0% | |
| ! | TACCCACACAAACACATTTT+GGG | + | chr5_4:12870874-12870893 | None:intergenic | 35.0% |
| !! | GATTCTCAACTTCTGCTTTT+CGG | - | chr5_4:12870988-12871007 | Msa0838480:intron | 35.0% |
| !! | ATTCTCAACTTCTGCTTTTC+GGG | - | chr5_4:12870989-12871008 | Msa0838480:intron | 35.0% |
| TCTCAGCTAATACTGTACAA+TGG | - | chr5_4:12871119-12871138 | Msa0838480:CDS | 35.0% | |
| ATACTGTACAATGGAGCTTA+AGG | - | chr5_4:12871128-12871147 | Msa0838480:CDS | 35.0% | |
| ACAAATAACAACGATACACG+GGG | + | chr5_4:12871341-12871360 | None:intergenic | 35.0% | |
| TACTGTTACGACTAGGTAGA+GGG | + | chr5_4:12866593-12866612 | None:intergenic | 40.0% | |
| ATACTGTTACGACTAGGTAG+AGG | + | chr5_4:12866594-12866613 | None:intergenic | 40.0% | |
| TTCCGAAAACGAGAAGAATG+AGG | + | chr5_4:12866795-12866814 | None:intergenic | 40.0% | |
| !!! | GGCAAGTTTTGATTGGAAGA+AGG | + | chr5_4:12866829-12866848 | None:intergenic | 40.0% |
| !! | GGGTTTAGGCAAGTTTTGAT+TGG | + | chr5_4:12866836-12866855 | None:intergenic | 40.0% |
| ACAATGGAGGTAAGATCGTT+GGG | + | chr5_4:12866856-12866875 | None:intergenic | 40.0% | |
| ACAGAAACGTTACCTATCGA+CGG | + | chr5_4:12866887-12866906 | None:intergenic | 40.0% | |
| !! | AGTGGGTTGAAGTTGTATCA+TGG | - | chr5_4:12867007-12867026 | Msa0838480:intron | 40.0% |
| ! | GTGGGTTGAAGTTGTATCAT+GGG | - | chr5_4:12867008-12867027 | Msa0838480:intron | 40.0% |
| ACAAACCACAGCCTTGATTA+AGG | + | chr5_4:12867997-12868016 | None:intergenic | 40.0% | |
| !! | CGTGTGACTAGTCTACAAAT+TGG | - | chr5_4:12868091-12868110 | Msa0838480:CDS | 40.0% |
| TTGGGAAAGAAGGTGATTTC+TGG | - | chr5_4:12868110-12868129 | Msa0838480:CDS | 40.0% | |
| GTGAGACTTAAGCCTTTCAT+TGG | + | chr5_4:12868245-12868264 | None:intergenic | 40.0% | |
| CTTTCTTTGGTATGTAGCCA+TGG | + | chr5_4:12868424-12868443 | None:intergenic | 40.0% | |
| CATGGCTACATACCAAAGAA+AGG | - | chr5_4:12868422-12868441 | Msa0838480:intron | 40.0% | |
| ! | GTTGGACTTTAGCCTTTCTT+TGG | + | chr5_4:12868437-12868456 | None:intergenic | 40.0% |
| !! | TGTTTAACTTGAAGCTCCTG+TGG | - | chr5_4:12868790-12868809 | Msa0838480:CDS | 40.0% |
| ATAATCTGAGTAGACCAAGG+AGG | - | chr5_4:12868881-12868900 | Msa0838480:intron | 40.0% | |
| CAGATATTCACATTCCTCCT+TGG | + | chr5_4:12868898-12868917 | None:intergenic | 40.0% | |
| CATTGTTTCGATTGCCAGTA+TGG | - | chr5_4:12869055-12869074 | Msa0838480:intron | 40.0% | |
| CATCACATGCTATCACTTAC+AGG | + | chr5_4:12869649-12869668 | None:intergenic | 40.0% | |
| CAGTACAGATGTTGAAGAAG+GGG | - | chr5_4:12869742-12869761 | Msa0838480:intron | 40.0% | |
| AGTACAGATGTTGAAGAAGG+GGG | - | chr5_4:12869743-12869762 | Msa0838480:intron | 40.0% | |
| ! | AGTAAAGCATCACCTCTCTT+TGG | + | chr5_4:12869863-12869882 | None:intergenic | 40.0% |
| !! | GAGGTGATGCTTTACTTTTC+TGG | - | chr5_4:12869867-12869886 | Msa0838480:intron | 40.0% |
| ! | GATGCATCTAAAGTTGCATC+CGG | + | chr5_4:12869902-12869921 | None:intergenic | 40.0% |
| TTAGATGCATCAAGCTTGCA+TGG | - | chr5_4:12869911-12869930 | Msa0838480:intron | 40.0% | |
| ! | ATAACTTTCAGGTGGTTGTC+CGG | - | chr5_4:12870060-12870079 | Msa0838480:intron | 40.0% |
| TACAACAATACAACAGAGGC+GGG | + | chr5_4:12870176-12870195 | None:intergenic | 40.0% | |
| TATGCGTTGCACTATTGCAT+AGG | + | chr5_4:12870388-12870407 | None:intergenic | 40.0% | |
| !!! | CAAGGGTGAGTTGTTTTAGT+TGG | + | chr5_4:12870774-12870793 | None:intergenic | 40.0% |
| CTTCCCAAAATGTGTTTGTG+TGG | - | chr5_4:12870868-12870887 | Msa0838480:intron | 40.0% | |
| ! | GTACCCACACAAACACATTT+TGG | + | chr5_4:12870875-12870894 | None:intergenic | 40.0% |
| AATGGAGCTTAAGGTCTCAA+AGG | - | chr5_4:12871137-12871156 | Msa0838480:CDS | 40.0% | |
| TCTGTTGTTGCCCATTTATG+AGG | - | chr5_4:12871366-12871385 | Msa0838480:five_prime_UTR | 40.0% | |
| CTGTTGTTGCCCATTTATGA+GGG | - | chr5_4:12871367-12871386 | Msa0838480:five_prime_UTR | 40.0% | |
| TGTTGTTGCCCATTTATGAG+GGG | - | chr5_4:12871368-12871387 | Msa0838480:five_prime_UTR | 40.0% | |
| GTAGAGGGTGGAAGAAAGAA+TGG | + | chr5_4:12866578-12866597 | None:intergenic | 45.0% | |
| GATTGGAAGAAGGAATGGAG+AGG | + | chr5_4:12866819-12866838 | None:intergenic | 45.0% | |
| GAGGTAAGATCGTTGGGTTT+AGG | + | chr5_4:12866850-12866869 | None:intergenic | 45.0% | |
| GACAATGGAGGTAAGATCGT+TGG | + | chr5_4:12866857-12866876 | None:intergenic | 45.0% | |
| !! | ATCGACGGTGTTATGGACAA+TGG | + | chr5_4:12866872-12866891 | None:intergenic | 45.0% |
| TTGTCCATAACACCGTCGAT+AGG | - | chr5_4:12866872-12866891 | Msa0838480:intron | 45.0% | |
| ! | GTTACCTATCGACGGTGTTA+TGG | + | chr5_4:12866879-12866898 | None:intergenic | 45.0% |
| AAGAAGGTAAGGGTGAACAG+TGG | - | chr5_4:12866989-12867008 | Msa0838480:intron | 45.0% | |
| AGAAGGTAAGGGTGAACAGT+GGG | - | chr5_4:12866990-12867009 | Msa0838480:intron | 45.0% | |
| CACAAACAGGGCCTTAATCA+AGG | - | chr5_4:12867983-12868002 | Msa0838480:intron | 45.0% | |
| AAGTAGGGGGTTTAGTACCA+TGG | - | chr5_4:12868404-12868423 | Msa0838480:intron | 45.0% | |
| AAGTCCAACGTAGCCTGATA+TGG | - | chr5_4:12868448-12868467 | Msa0838480:intron | 45.0% | |
| TATGCCATATCAGGCTACGT+TGG | + | chr5_4:12868455-12868474 | None:intergenic | 45.0% | |
| !! | ACTGTTGACTTGTGCATGCT+CGG | + | chr5_4:12868936-12868955 | None:intergenic | 45.0% |
| !! | ACAGTTGTTGATAGCGAGAC+TGG | - | chr5_4:12868951-12868970 | Msa0838480:CDS | 45.0% |
| AAAGAGCAAAGACAGCAGGT+AGG | - | chr5_4:12868974-12868993 | Msa0838480:CDS | 45.0% | |
| AAAGATGGGGTTTGCCATAC+TGG | + | chr5_4:12869072-12869091 | None:intergenic | 45.0% | |
| !! | TACGAGCTCTGGAACATTTC+TGG | - | chr5_4:12869120-12869139 | Msa0838480:intron | 45.0% |
| TCACAATCTTATCACGTCCC+CGG | + | chr5_4:12869147-12869166 | None:intergenic | 45.0% | |
| GCCTCACAATATACAGAGCA+CGG | - | chr5_4:12869503-12869522 | Msa0838480:intron | 45.0% | |
| ACCGTGCTCTGTATATTGTG+AGG | + | chr5_4:12869507-12869526 | None:intergenic | 45.0% | |
| CAATATACAGAGCACGGTGA+AGG | - | chr5_4:12869509-12869528 | Msa0838480:intron | 45.0% | |
| ACAGTGTTCCTTGCTGCTAA+GGG | - | chr5_4:12869770-12869789 | Msa0838480:intron | 45.0% | |
| TGAAATTCCCCTTAGCAGCA+AGG | + | chr5_4:12869781-12869800 | None:intergenic | 45.0% | |
| GGAATTTCAGTAATGTGCCG+TGG | - | chr5_4:12869792-12869811 | Msa0838480:intron | 45.0% | |
| !!! | ACTTTTCTGGAGCATGAAGC+CGG | - | chr5_4:12869880-12869899 | Msa0838480:intron | 45.0% |
| GGTGGTTGTCCGGTAATTAA+AGG | - | chr5_4:12870070-12870089 | Msa0838480:intron | 45.0% | |
| TTCATTGACGCGGATCCATT+TGG | + | chr5_4:12870113-12870132 | None:intergenic | 45.0% | |
| GCTGAGACTTTGCACATGAT+TGG | + | chr5_4:12871106-12871125 | None:intergenic | 45.0% | |
| GTTGTTGCCCATTTATGAGG+GGG | - | chr5_4:12871369-12871388 | Msa0838480:five_prime_UTR | 45.0% | |
| !!! | AAAAAAAAAGTATATATAAT+AGG | + | chr5_4:12869228-12869247 | None:intergenic | 5.0% |
| TGTTACGACTAGGTAGAGGG+TGG | + | chr5_4:12866590-12866609 | None:intergenic | 50.0% | |
| !! | GACGGTGTTATGGACAATGG+AGG | + | chr5_4:12866869-12866888 | None:intergenic | 50.0% |
| AACTAGCAGCCTCGAACTCT+AGG | - | chr5_4:12868167-12868186 | Msa0838480:CDS | 50.0% | |
| TTGTTCCCTCCTAGAGTTCG+AGG | + | chr5_4:12868179-12868198 | None:intergenic | 50.0% | |
| CTGGAAAGAGCAAAGACAGC+AGG | - | chr5_4:12868970-12868989 | Msa0838480:CDS | 50.0% | |
| CACAATCTTATCACGTCCCC+GGG | + | chr5_4:12869146-12869165 | None:intergenic | 50.0% | |
| GGGGACGTGATAAGATTGTG+AGG | - | chr5_4:12869146-12869165 | Msa0838480:intron | 50.0% | |
| AGGTGGGGTTACTTACCTAC+AGG | + | chr5_4:12869208-12869227 | None:intergenic | 50.0% | |
| GACAGTGTTCCTTGCTGCTA+AGG | - | chr5_4:12869769-12869788 | Msa0838480:intron | 50.0% | |
| CAGTGTTCCTTGCTGCTAAG+GGG | - | chr5_4:12869771-12869790 | Msa0838480:intron | 50.0% | |
| ! | TCAACGGGCTTTCACAGTAG+AGG | - | chr5_4:12870010-12870029 | Msa0838480:intron | 50.0% |
| CGTTGCACTATTGCATAGGC+TGG | + | chr5_4:12870384-12870403 | None:intergenic | 50.0% | |
| GAAACGTTTGCAGCGTGATG+CGG | - | chr5_4:12871159-12871178 | Msa0838480:CDS | 50.0% | |
| AAACGTTTGCAGCGTGATGC+GGG | - | chr5_4:12871160-12871179 | Msa0838480:CDS | 50.0% | |
| ATGAGCTCGGAGCAAAAAGC+TGG | + | chr5_4:12871315-12871334 | None:intergenic | 50.0% | |
| ATACACGGGGCAAATGAGCT+CGG | + | chr5_4:12871328-12871347 | None:intergenic | 50.0% | |
| GAGAAGGCCCCCTCATAAAT+GGG | + | chr5_4:12871379-12871398 | None:intergenic | 50.0% | |
| AGAGAAGGCCCCCTCATAAA+TGG | + | chr5_4:12871380-12871399 | None:intergenic | 50.0% | |
| CAGGGCCTTAATCAAGGCTG+TGG | - | chr5_4:12867989-12868008 | Msa0838480:intron | 55.0% | |
| TAGCAGCCTCGAACTCTAGG+AGG | - | chr5_4:12868170-12868189 | Msa0838480:CDS | 55.0% | |
| ! | AGCAGCCTCGAACTCTAGGA+GGG | - | chr5_4:12868171-12868190 | Msa0838480:CDS | 55.0% |
| TGTAGAGTGCGTACGAGCTC+TGG | - | chr5_4:12869109-12869128 | Msa0838480:intron | 55.0% | |
| !! | GCTCTGGAACATTTCTGGCC+CGG | - | chr5_4:12869125-12869144 | Msa0838480:intron | 55.0% |
| !! | CTCTGGAACATTTCTGGCCC+GGG | - | chr5_4:12869126-12869145 | Msa0838480:intron | 55.0% |
| !! | TCTGGAACATTTCTGGCCCG+GGG | - | chr5_4:12869127-12869146 | Msa0838480:intron | 55.0% |
| TGTGCTGCCTTCTGCGTCAA+CGG | - | chr5_4:12869994-12870013 | Msa0838480:intron | 55.0% | |
| TGAAAGCCCGTTGACGCAGA+AGG | + | chr5_4:12870004-12870023 | None:intergenic | 55.0% | |
| AACGTTTGCAGCGTGATGCG+GGG | - | chr5_4:12871161-12871180 | Msa0838480:CDS | 55.0% | |
| GTGCTGCCTTCTGCGTCAAC+GGG | - | chr5_4:12869995-12870014 | Msa0838480:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 12866533 | 12871402 | 12866533 | ID=Msa0838480;Name=Msa0838480 |
| chr5_4 | mRNA | 12866533 | 12871402 | 12866533 | ID=Msa0838480-mRNA-1;Parent=Msa0838480;Name=Msa0838480-mRNA-1;_AED=0.16;_eAED=0.16;_QI=164|1|1|1|0.85|0.87|8|336|289 |
| chr5_4 | exon | 12866533 | 12866852 | 12866533 | ID=Msa0838480-mRNA-1:exon:5720;Parent=Msa0838480-mRNA-1 |
| chr5_4 | exon | 12867775 | 12867864 | 12867775 | ID=Msa0838480-mRNA-1:exon:5719;Parent=Msa0838480-mRNA-1 |
| chr5_4 | exon | 12868003 | 12868190 | 12868003 | ID=Msa0838480-mRNA-1:exon:5718;Parent=Msa0838480-mRNA-1 |
| chr5_4 | exon | 12868287 | 12868416 | 12868287 | ID=Msa0838480-mRNA-1:exon:5717;Parent=Msa0838480-mRNA-1 |
| chr5_4 | exon | 12868724 | 12868821 | 12868724 | ID=Msa0838480-mRNA-1:exon:5716;Parent=Msa0838480-mRNA-1 |
| chr5_4 | exon | 12868944 | 12869041 | 12868944 | ID=Msa0838480-mRNA-1:exon:5715;Parent=Msa0838480-mRNA-1 |
| chr5_4 | exon | 12870873 | 12870957 | 12870873 | ID=Msa0838480-mRNA-1:exon:5714;Parent=Msa0838480-mRNA-1 |
| chr5_4 | exon | 12871042 | 12871402 | 12871042 | ID=Msa0838480-mRNA-1:exon:5713;Parent=Msa0838480-mRNA-1 |
| chr5_4 | five_prime_UTR | 12871239 | 12871402 | 12871239 | ID=Msa0838480-mRNA-1:five_prime_utr;Parent=Msa0838480-mRNA-1 |
| chr5_4 | CDS | 12871042 | 12871238 | 12871042 | ID=Msa0838480-mRNA-1:cds;Parent=Msa0838480-mRNA-1 |
| chr5_4 | CDS | 12870873 | 12870957 | 12870873 | ID=Msa0838480-mRNA-1:cds;Parent=Msa0838480-mRNA-1 |
| chr5_4 | CDS | 12868944 | 12869041 | 12868944 | ID=Msa0838480-mRNA-1:cds;Parent=Msa0838480-mRNA-1 |
| chr5_4 | CDS | 12868724 | 12868821 | 12868724 | ID=Msa0838480-mRNA-1:cds;Parent=Msa0838480-mRNA-1 |
| chr5_4 | CDS | 12868287 | 12868416 | 12868287 | ID=Msa0838480-mRNA-1:cds;Parent=Msa0838480-mRNA-1 |
| chr5_4 | CDS | 12868003 | 12868190 | 12868003 | ID=Msa0838480-mRNA-1:cds;Parent=Msa0838480-mRNA-1 |
| chr5_4 | CDS | 12867791 | 12867864 | 12867791 | ID=Msa0838480-mRNA-1:cds;Parent=Msa0838480-mRNA-1 |
| chr5_4 | three_prime_UTR | 12867775 | 12867790 | 12867775 | ID=Msa0838480-mRNA-1:three_prime_utr;Parent=Msa0838480-mRNA-1 |
| chr5_4 | three_prime_UTR | 12866533 | 12866852 | 12866533 | ID=Msa0838480-mRNA-1:three_prime_utr;Parent=Msa0838480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
