Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280370 | XP_003594716.1 | 100.000 | 192 | 0 | 0 | 1 | 192 | 1 | 192 | 1.89e-135 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280370 | sp|P57741|PFD3_ARATH | 83.721 | 172 | 28 | 0 | 11 | 182 | 13 | 184 | 6.37e-106 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280370 | G7IMS6 | 100.000 | 192 | 0 | 0 | 1 | 192 | 1 | 192 | 9.03e-136 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0280370 | 0.806441 | 8.212889e-50 | -8.615850e-47 |
| Msa0032810 | Msa0280370 | 0.810673 | 1.025277e-50 | -8.615850e-47 |
| Msa0068020 | Msa0280370 | 0.816762 | 4.679669e-52 | -8.615850e-47 |
| Msa0113130 | Msa0280370 | 0.805357 | 1.387946e-49 | -8.615850e-47 |
| Msa0113240 | Msa0280370 | 0.818782 | 1.637956e-52 | -8.615850e-47 |
| Msa0115870 | Msa0280370 | 0.809012 | 2.334736e-50 | -8.615850e-47 |
| Msa0177960 | Msa0280370 | 0.839359 | 1.661388e-57 | -8.615850e-47 |
| Msa0199340 | Msa0280370 | 0.819370 | 1.203635e-52 | -8.615850e-47 |
| Msa0199620 | Msa0280370 | 0.807619 | 4.626255e-50 | -8.615850e-47 |
| Msa0204960 | Msa0280370 | 0.802166 | 6.382948e-49 | -8.615850e-47 |
| Msa0217670 | Msa0280370 | 0.806665 | 7.368447e-50 | -8.615850e-47 |
| Msa0218720 | Msa0280370 | 0.818673 | 1.733366e-52 | -8.615850e-47 |
| Msa0230490 | Msa0280370 | 0.802324 | 5.920504e-49 | -8.615850e-47 |
| Msa0230520 | Msa0280370 | 0.832007 | 1.208402e-55 | -8.615850e-47 |
| Msa0245580 | Msa0280370 | 0.830056 | 3.639589e-55 | -8.615850e-47 |
| Msa0257490 | Msa0280370 | 0.839499 | 1.528141e-57 | -8.615850e-47 |
| Msa0280370 | Msa0281530 | 0.820313 | 7.325994e-53 | -8.615850e-47 |
| Msa0280370 | Msa0296250 | 0.826545 | 2.557945e-54 | -8.615850e-47 |
| Msa0280370 | Msa0296790 | 0.838164 | 3.384313e-57 | -8.615850e-47 |
| Msa0280370 | Msa0319640 | 0.808945 | 2.412822e-50 | -8.615850e-47 |
| Msa0280370 | Msa0320590 | 0.811371 | 7.238937e-51 | -8.615850e-47 |
| Msa0280370 | Msa0322240 | 0.808245 | 3.404648e-50 | -8.615850e-47 |
| Msa0280370 | Msa0332640 | 0.809982 | 1.445526e-50 | -8.615850e-47 |
| Msa0280370 | Msa0385500 | 0.837920 | 3.908449e-57 | -8.615850e-47 |
| Msa0280370 | Msa0423750 | 0.821201 | 4.578749e-53 | -8.615850e-47 |
| Msa0280370 | Msa0431980 | 0.805681 | 1.187081e-49 | -8.615850e-47 |
| Msa0280370 | Msa0437020 | 0.808080 | 3.691625e-50 | -8.615850e-47 |
| Msa0280370 | Msa0443390 | 0.806294 | 8.820188e-50 | -8.615850e-47 |
| Msa0280370 | Msa0534750 | 0.803097 | 4.102302e-49 | -8.615850e-47 |
| Msa0280370 | Msa0610550 | 0.806228 | 9.110444e-50 | -8.615850e-47 |
| Msa0280370 | Msa0615580 | 0.833767 | 4.414407e-56 | -8.615850e-47 |
| Msa0280370 | Msa0672100 | 0.831219 | 1.889777e-55 | -8.615850e-47 |
| Msa0280370 | Msa0693210 | 0.803064 | 4.166774e-49 | -8.615850e-47 |
| Msa0280370 | Msa0808800 | 0.803326 | 3.677781e-49 | -8.615850e-47 |
| Msa0280370 | Msa0838370 | 0.802191 | 6.307231e-49 | -8.615850e-47 |
| Msa0280370 | Msa0838480 | 0.804432 | 2.166885e-49 | -8.615850e-47 |
| Msa0280370 | Msa0870750 | 0.818997 | 1.463201e-52 | -8.615850e-47 |
| Msa0280370 | Msa0903870 | 0.813650 | 2.299015e-51 | -8.615850e-47 |
| Msa0280370 | Msa0913240 | 0.814685 | 1.358581e-51 | -8.615850e-47 |
| Msa0280370 | Msa0944200 | 0.802627 | 5.129346e-49 | -8.615850e-47 |
| Msa0280370 | Msa1039810 | 0.802340 | 5.875769e-49 | -8.615850e-47 |
| Msa0280370 | Msa1123770 | 0.801130 | 1.040829e-48 | -8.615850e-47 |
| Msa0280370 | Msa1128270 | 0.810092 | 1.369069e-50 | -8.615850e-47 |
| Msa0280370 | Msa1128280 | 0.820517 | 6.577522e-53 | -8.615850e-47 |
| Msa0280370 | Msa1165270 | 0.826269 | 2.975793e-54 | -8.615850e-47 |
| Msa0280370 | Msa1165780 | 0.821704 | 3.505270e-53 | -8.615850e-47 |
| Msa0280370 | Msa1175350 | 0.847380 | 1.199412e-59 | -8.615850e-47 |
| Msa0280370 | Msa1208020 | 0.802775 | 4.780473e-49 | -8.615850e-47 |
| Msa0280370 | Msa1258630 | 0.806571 | 7.709925e-50 | -8.615850e-47 |
| Msa0280370 | Msa1262890 | 0.804415 | 2.183979e-49 | -8.615850e-47 |
| Msa0280370 | Msa1277260 | 0.815832 | 7.552546e-52 | -8.615850e-47 |
| Msa0280370 | Msa1315890 | 0.847058 | 1.470300e-59 | -8.615850e-47 |
| Msa0280370 | Msa1351540 | 0.811047 | 8.510596e-51 | -8.615850e-47 |
| Msa0280370 | Msa1374830 | 0.818521 | 1.876971e-52 | -8.615850e-47 |
| Msa0280370 | Msa1418070 | 0.810199 | 1.298233e-50 | -8.615850e-47 |
| Msa0280370 | Msa1420430 | 0.812720 | 3.678296e-51 | -8.615850e-47 |
| Msa0280370 | Msa1445370 | 0.810289 | 1.241072e-50 | -8.615850e-47 |
| Msa0280370 | Msa1458090 | 0.821670 | 3.569311e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280370 | MtrunA17_Chr2g0294251 | 100.000 | 192 | 0 | 0 | 1 | 192 | 1 | 192 | 1.74e-139 | 387 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280370 | AT5G49510.2 | 83.721 | 172 | 28 | 0 | 11 | 182 | 13 | 184 | 6.48e-107 | 305 |
| Msa0280370 | AT5G49510.1 | 83.721 | 172 | 28 | 0 | 11 | 182 | 13 | 184 | 6.48e-107 | 305 |
Find 46 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTAATCTAAATCAAATT+TGG | 0.077040 | 2_3:-14995679 | Msa0280370:five_prime_UTR |
| AAACTGATTCTGTGTGTTTA+TGG | 0.168432 | 2_3:-14990787 | Msa0280370:CDS |
| CAATTGCTCGTGTTTATAAT+TGG | 0.169849 | 2_3:-14990177 | Msa0280370:CDS |
| TGATTATGATTATGATTTCT+TGG | 0.235794 | 2_3:-14989896 | Msa0280370:three_prime_UTR |
| TTCCTTCCTGTCTGTAGTTC+TGG | 0.239248 | 2_3:-14989986 | Msa0280370:three_prime_UTR |
| GTTTGCCCAAAGTAGTTTCT+AGG | 0.258157 | 2_3:-14989964 | Msa0280370:three_prime_UTR |
| CTTGTTGAGTTCTCCGTTGA+TGG | 0.269073 | 2_3:+14990149 | None:intergenic |
| TTCTAATCTAAATCAAATTT+GGG | 0.277414 | 2_3:-14995678 | Msa0280370:five_prime_UTR |
| CAAACCTATCTCACTCAATT+AGG | 0.296890 | 2_3:-14995498 | Msa0280370:CDS |
| GTGTATTCTACTCTGCAATT+TGG | 0.355142 | 2_3:-14989816 | Msa0280370:three_prime_UTR |
| AATTGCTCGTGTTTATAATT+GGG | 0.358053 | 2_3:-14990176 | Msa0280370:CDS |
| AGCAACAAGAACTTCTAAAC+TGG | 0.406664 | 2_3:+14990596 | None:intergenic |
| GAGACCTAATTGAGTGAGAT+AGG | 0.406753 | 2_3:+14995494 | None:intergenic |
| CGCGCAGCAAAGGGAACTTC+AGG | 0.407214 | 2_3:-14994480 | Msa0280370:intron |
| TGATTCTGTGTGTTTATGGC+TGG | 0.425847 | 2_3:-14990783 | Msa0280370:CDS |
| GCCTTCTGACACCTCAAAAT+CGG | 0.428491 | 2_3:+14990835 | None:intergenic |
| CCTATCCTAGAAACTACTTT+GGG | 0.439541 | 2_3:+14989959 | None:intergenic |
| TGCGACTTTGCAAGCAAAGA+AGG | 0.447827 | 2_3:-14993524 | Msa0280370:CDS |
| TCCTATCCTAGAAACTACTT+TGG | 0.458624 | 2_3:+14989958 | None:intergenic |
| AGACCTGAGTAATTGTCGTT+TGG | 0.476174 | 2_3:+14990553 | None:intergenic |
| AACTGGCTCTAGCATTATCC+AGG | 0.479058 | 2_3:+14990613 | None:intergenic |
| CCCAAAGTAGTTTCTAGGAT+AGG | 0.497185 | 2_3:-14989959 | Msa0280370:three_prime_UTR |
| TGAAGCTCCTCGCGCAGCAA+AGG | 0.498907 | 2_3:-14994490 | Msa0280370:CDS |
| TTGCAGGCTTCAGCAATACA+AGG | 0.499475 | 2_3:-14994522 | Msa0280370:intron |
| GATTCTGTGTGTTTATGGCT+GGG | 0.504747 | 2_3:-14990782 | Msa0280370:CDS |
| GAAGCTCCTCGCGCAGCAAA+GGG | 0.509666 | 2_3:-14994489 | Msa0280370:CDS |
| CGATTGCAGTGCTTCAACAA+TGG | 0.524135 | 2_3:-14995595 | Msa0280370:exon |
| TTTGTCTTGTATGATCATAC+GGG | 0.549051 | 2_3:-14989838 | Msa0280370:three_prime_UTR |
| GAAGTTCCCTTTGCTGCGCG+AGG | 0.553650 | 2_3:+14994483 | None:intergenic |
| CACAGAATCAGTTTCTTCGA+TGG | 0.555916 | 2_3:+14990796 | None:intergenic |
| GTTGGAATATTCATTAGAAG+AGG | 0.558241 | 2_3:-14990747 | Msa0280370:intron |
| GCGACTTTGCAAGCAAAGAA+GGG | 0.569412 | 2_3:-14993523 | Msa0280370:CDS |
| TGGTTTGCAGGCTAAGATAC+CGG | 0.570733 | 2_3:-14993572 | Msa0280370:intron |
| GCTGGGAGCAAATGTTATGT+TGG | 0.581899 | 2_3:-14990765 | Msa0280370:CDS |
| TTGCAAGCAAAGAAGGGCAC+CGG | 0.592987 | 2_3:-14993517 | Msa0280370:CDS |
| TCTTCAACGAACTGAGCACC+TGG | 0.598579 | 2_3:+14995525 | None:intergenic |
| AACCAGAACTACAGACAGGA+AGG | 0.605903 | 2_3:+14989984 | None:intergenic |
| AGTCCTCAAACGAACCTCAC+CGG | 0.608080 | 2_3:+14993498 | None:intergenic |
| GGCAAACCAGAACTACAGAC+AGG | 0.611996 | 2_3:+14989980 | None:intergenic |
| TTCTTCGTCTTCATCATCAG+CGG | 0.634937 | 2_3:-14995568 | Msa0280370:CDS |
| ATAATTGGGATGTCCATCAA+CGG | 0.640983 | 2_3:-14990162 | Msa0280370:CDS |
| ACAGAACGAAGAGGAATACC+AGG | 0.644106 | 2_3:-14995543 | Msa0280370:CDS |
| AGCAAAGAAGGGCACCGGTG+AGG | 0.645137 | 2_3:-14993512 | Msa0280370:intron |
| GGACCAAACGACAATTACTC+AGG | 0.647185 | 2_3:-14990556 | Msa0280370:intron |
| GACGCATAATCTAAGCTGAA+CGG | 0.653616 | 2_3:+14990046 | None:intergenic |
| TCAGCGGTGACAGAACGAAG+AGG | 0.716817 | 2_3:-14995552 | Msa0280370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTATATTTTTTATGAA+TGG | - | chr2_3:14990743-14990762 | Msa0280370:intron | 10.0% |
| !!! | AATTTATTTTATGCTTTAAA+GGG | - | chr2_3:14990873-14990892 | Msa0280370:intron | 10.0% |
| !! | TGTAGTAAATAAATTTAAAA+TGG | + | chr2_3:14994550-14994569 | None:intergenic | 10.0% |
| !! | AATGCAAAAAATAAAATAAA+AGG | + | chr2_3:14995223-14995242 | None:intergenic | 10.0% |
| !! | TTTCTAATCTAAATCAAATT+TGG | - | chr2_3:14989793-14989812 | Msa0280370:three_prime_UTR | 15.0% |
| !! | TTCTAATCTAAATCAAATTT+GGG | - | chr2_3:14989794-14989813 | Msa0280370:three_prime_UTR | 15.0% |
| !!! | ATTTCATAATGAAGTAATTT+TGG | - | chr2_3:14990554-14990573 | Msa0280370:intron | 15.0% |
| !!! | GAATTTATTTTATGCTTTAA+AGG | - | chr2_3:14990872-14990891 | Msa0280370:intron | 15.0% |
| !!! | ATTTATTTTATGCTTTAAAG+GGG | - | chr2_3:14990874-14990893 | Msa0280370:intron | 15.0% |
| !!! | TTCTCTTAATAGTTTTTTAT+AGG | + | chr2_3:14991594-14991613 | None:intergenic | 15.0% |
| !!! | GTAGATAAATTTTAGATAAA+AGG | - | chr2_3:14992021-14992040 | Msa0280370:intron | 15.0% |
| !!! | AATTTTAGATAAAAGGTTTT+TGG | - | chr2_3:14992028-14992047 | Msa0280370:intron | 15.0% |
| !!! | TTTAGGATTTTATTATCTTA+AGG | + | chr2_3:14993583-14993602 | None:intergenic | 15.0% |
| !!! | TCTATTACTTTAATTTGTTT+AGG | + | chr2_3:14993600-14993619 | None:intergenic | 15.0% |
| !! | AAGATTATACTGTTTAATTA+GGG | + | chr2_3:14993632-14993651 | None:intergenic | 15.0% |
| !! | TAAGATTATACTGTTTAATT+AGG | + | chr2_3:14993633-14993652 | None:intergenic | 15.0% |
| !!! | AAGATAAATCTCTAAAATTA+AGG | - | chr2_3:14993690-14993709 | Msa0280370:intron | 15.0% |
| !! | ATCAATATCCTATTAATATA+AGG | - | chr2_3:14993722-14993741 | Msa0280370:intron | 15.0% |
| !! | TCAATATCCTATTAATATAA+GGG | - | chr2_3:14993723-14993742 | Msa0280370:intron | 15.0% |
| !! | ATAAATTTCAAGATAATCAA+GGG | + | chr2_3:14993920-14993939 | None:intergenic | 15.0% |
| !! | TATAAATTTCAAGATAATCA+AGG | + | chr2_3:14993921-14993940 | None:intergenic | 15.0% |
| !!! | GTATATAAAGGTATAATTTA+GGG | + | chr2_3:14994056-14994075 | None:intergenic | 15.0% |
| !!! | AGTATATAAAGGTATAATTT+AGG | + | chr2_3:14994057-14994076 | None:intergenic | 15.0% |
| !!! | TGAAAAAAAGAAGTATATAA+AGG | + | chr2_3:14994068-14994087 | None:intergenic | 15.0% |
| !!! | ATATACTTCTTTTTTTCAAA+TGG | - | chr2_3:14994070-14994089 | Msa0280370:intron | 15.0% |
| !!! | TATACTTCTTTTTTTCAAAT+GGG | - | chr2_3:14994071-14994090 | Msa0280370:intron | 15.0% |
| !!! | ATAACATTATATTTTGTCAA+TGG | - | chr2_3:14994290-14994309 | Msa0280370:intron | 15.0% |
| !!! | TTTTTAATTTTGATGAATTG+TGG | - | chr2_3:14995463-14995482 | Msa0280370:CDS | 15.0% |
| !!! | AAACATTTTTGTATAATTGA+TGG | - | chr2_3:14995605-14995624 | Msa0280370:five_prime_UTR | 15.0% |
| !!! | AACATTTTTGTATAATTGAT+GGG | - | chr2_3:14995606-14995625 | Msa0280370:five_prime_UTR | 15.0% |
| !!! | TCTCAAAATCTCATTTTTTA+TGG | - | chr2_3:14990066-14990085 | Msa0280370:three_prime_UTR | 20.0% |
| !! | TTCATTTCTATAGTTTAGTT+TGG | - | chr2_3:14990137-14990156 | Msa0280370:CDS | 20.0% |
| !!! | GTAAAGTATTAAGATGAAAA+GGG | - | chr2_3:14990364-14990383 | Msa0280370:intron | 20.0% |
| !!! | GAAAATTTTGGTTTGAATTT+CGG | - | chr2_3:14990472-14990491 | Msa0280370:intron | 20.0% |
| !! | GCATATTATACTTTATCTTT+AGG | - | chr2_3:14991030-14991049 | Msa0280370:intron | 20.0% |
| !! | TAGTTTGATTGAAGATAAAA+AGG | - | chr2_3:14991077-14991096 | Msa0280370:intron | 20.0% |
| !! | AATTACCTTTCTAATTGATT+TGG | - | chr2_3:14991436-14991455 | Msa0280370:intron | 20.0% |
| !!! | ATTACCTTTCTAATTGATTT+GGG | - | chr2_3:14991437-14991456 | Msa0280370:intron | 20.0% |
| !! | AACTATTAAGAGAAACTATT+AGG | - | chr2_3:14991600-14991619 | Msa0280370:intron | 20.0% |
| !!! | GAAATTTTGTGCATTTTATT+TGG | - | chr2_3:14992102-14992121 | Msa0280370:intron | 20.0% |
| !! | AAATTCAACAATTAAACATG+GGG | + | chr2_3:14992487-14992506 | None:intergenic | 20.0% |
| !! | GAAATTCAACAATTAAACAT+GGG | + | chr2_3:14992488-14992507 | None:intergenic | 20.0% |
| !! | TGAAATTCAACAATTAAACA+TGG | + | chr2_3:14992489-14992508 | None:intergenic | 20.0% |
| !!! | TAAACAAAAAATCCTTTTCT+AGG | + | chr2_3:14992796-14992815 | None:intergenic | 20.0% |
| !! | TTGTTCATTATTTATTAGCT+AGG | - | chr2_3:14992878-14992897 | Msa0280370:intron | 20.0% |
| !! | TAAATTCAAATGCTTCTTAA+TGG | - | chr2_3:14993118-14993137 | Msa0280370:intron | 20.0% |
| !!! | ATACTTCTTTTTTTCAAATG+GGG | - | chr2_3:14994072-14994091 | Msa0280370:intron | 20.0% |
| !! | TTTCAAATGTTTGAATGTTA+TGG | - | chr2_3:14994106-14994125 | Msa0280370:intron | 20.0% |
| !!! | TTTTAAATAGTTGCATCATA+AGG | + | chr2_3:14994527-14994546 | None:intergenic | 20.0% |
| !! | TAAATTTATGTTAACATCAG+AGG | - | chr2_3:14994999-14995018 | Msa0280370:intron | 20.0% |
| !! | AAATTTATGTTAACATCAGA+GGG | - | chr2_3:14995000-14995019 | Msa0280370:intron | 20.0% |
| !!! | TATTGATTGTATATGTTATC+AGG | - | chr2_3:14995269-14995288 | Msa0280370:intron | 20.0% |
| !! | TGATTATGATTATGATTTCT+TGG | - | chr2_3:14995576-14995595 | Msa0280370:CDS | 20.0% |
| !!! | ATTTGTTGTCGTTTTGTTTT+GGG | + | chr2_3:14989831-14989850 | None:intergenic | 25.0% |
| !!! | TATTTGTTGTCGTTTTGTTT+TGG | + | chr2_3:14989832-14989851 | None:intergenic | 25.0% |
| ! | AAGTTTCTTATGAAGTGTAT+GGG | - | chr2_3:14990212-14990231 | Msa0280370:intron | 25.0% |
| !!! | TATGGCATTTTAGTACTTTA+TGG | - | chr2_3:14990247-14990266 | Msa0280370:intron | 25.0% |
| !! | AATTACTAACAGTAGGTTTT+AGG | - | chr2_3:14990342-14990361 | Msa0280370:intron | 25.0% |
| !! | GGTAAAGTATTAAGATGAAA+AGG | - | chr2_3:14990363-14990382 | Msa0280370:intron | 25.0% |
| ! | AATGTGATTATGAGGTAAAT+TGG | - | chr2_3:14990407-14990426 | Msa0280370:intron | 25.0% |
| ! | GAGGTAAATTGGATTAATAT+AGG | - | chr2_3:14990418-14990437 | Msa0280370:intron | 25.0% |
| !! | ATTACAGTCTTCGAAAATTT+TGG | - | chr2_3:14990460-14990479 | Msa0280370:intron | 25.0% |
| !! | GAAAATTTGTGATTTTGGAT+TGG | - | chr2_3:14990503-14990522 | Msa0280370:intron | 25.0% |
| ! | TATAGTTAGATTAGTGAATG+AGG | - | chr2_3:14990624-14990643 | Msa0280370:CDS | 25.0% |
| ! | CAACTATTAATAACAAAGCA+AGG | + | chr2_3:14990793-14990812 | None:intergenic | 25.0% |
| ! | CAAACTATTAACAAACTACA+AGG | + | chr2_3:14991064-14991083 | None:intergenic | 25.0% |
| ! | TTGAAATCTTAAAATGCCAT+TGG | + | chr2_3:14991137-14991156 | None:intergenic | 25.0% |
| !!! | CATTTTAAGATTTCAACTTC+TGG | - | chr2_3:14991141-14991160 | Msa0280370:intron | 25.0% |
| !!! | TTACCTTTCTAATTGATTTG+GGG | - | chr2_3:14991438-14991457 | Msa0280370:intron | 25.0% |
| ! | TAGAAAAGATGTTAGAAAAC+AGG | - | chr2_3:14991469-14991488 | Msa0280370:intron | 25.0% |
| ! | AACTATTAGGAAAGATTTAG+AGG | - | chr2_3:14991613-14991632 | Msa0280370:intron | 25.0% |
| !! | GTTGTTTGTTTGTTCTATTT+TGG | - | chr2_3:14991775-14991794 | Msa0280370:intron | 25.0% |
| ! | TATCTTTCAAATGTTCAGAT+TGG | - | chr2_3:14992056-14992075 | Msa0280370:intron | 25.0% |
| ! | ATATACAAGCACTAATTACA+TGG | - | chr2_3:14992343-14992362 | Msa0280370:intron | 25.0% |
| ! | TAAATATACCTCTAGACAAA+AGG | + | chr2_3:14992378-14992397 | None:intergenic | 25.0% |
| ! | AATTCAACAATTAAACATGG+GGG | + | chr2_3:14992486-14992505 | None:intergenic | 25.0% |
| ! | AGATGATGAATCAACTATTA+GGG | + | chr2_3:14992645-14992664 | None:intergenic | 25.0% |
| ! | TAGAACTACATCTTTATGTT+GGG | + | chr2_3:14992720-14992739 | None:intergenic | 25.0% |
| ! | TTAGAACTACATCTTTATGT+TGG | + | chr2_3:14992721-14992740 | None:intergenic | 25.0% |
| ! | AGTATTATCCAATTCTAACT+TGG | - | chr2_3:14993480-14993499 | Msa0280370:intron | 25.0% |
| ! | TTATACTGTTTAATTAGGGT+AGG | + | chr2_3:14993628-14993647 | None:intergenic | 25.0% |
| ! | GCTTATTAAGGATTCAAAAA+TGG | - | chr2_3:14993764-14993783 | Msa0280370:intron | 25.0% |
| !!! | ATATAAAAGTACTACGTGTA+AGG | + | chr2_3:14994349-14994368 | None:intergenic | 25.0% |
| ! | ATCAGTTACATTGAAAACTA+AGG | - | chr2_3:14994367-14994386 | Msa0280370:intron | 25.0% |
| ! | GCAGTAACTATTGTATAAAA+AGG | + | chr2_3:14994411-14994430 | None:intergenic | 25.0% |
| !! | GAATTGATAATCGTTACTTA+GGG | + | chr2_3:14994456-14994475 | None:intergenic | 25.0% |
| !! | AGAAGATTTATGTTTGACTT+TGG | - | chr2_3:14994598-14994617 | Msa0280370:intron | 25.0% |
| ! | TGTGAAAAGCAAAAAAAATG+AGG | + | chr2_3:14994964-14994983 | None:intergenic | 25.0% |
| ! | AATTGCTCGTGTTTATAATT+GGG | - | chr2_3:14995296-14995315 | Msa0280370:intron | 25.0% |
| !! | TTTTGTCTTGTATGATCATA+CGG | - | chr2_3:14995633-14995652 | Msa0280370:five_prime_UTR | 25.0% |
| CAAGTTTCTTATGAAGTGTA+TGG | - | chr2_3:14990211-14990230 | Msa0280370:intron | 30.0% | |
| AGTTTCTTATGAAGTGTATG+GGG | - | chr2_3:14990213-14990232 | Msa0280370:intron | 30.0% | |
| CGTAGATAATTACTAACAGT+AGG | - | chr2_3:14990335-14990354 | Msa0280370:intron | 30.0% | |
| AGTATTAAGATGAAAAGGGA+TGG | - | chr2_3:14990368-14990387 | Msa0280370:intron | 30.0% | |
| TTCAACTGAATGTGATTATG+AGG | - | chr2_3:14990399-14990418 | Msa0280370:intron | 30.0% | |
| ! | GGTGAGAAAATTTGTGATTT+TGG | - | chr2_3:14990498-14990517 | Msa0280370:intron | 30.0% |
| ! | GTACTTAGATTTTCATTCTC+TGG | - | chr2_3:14990684-14990703 | Msa0280370:intron | 30.0% |
| TTTGCAAGTTAACATTGCAT+TGG | - | chr2_3:14990833-14990852 | Msa0280370:CDS | 30.0% | |
| TTGAAACTAGAAAGAACCAA+TGG | - | chr2_3:14991118-14991137 | Msa0280370:intron | 30.0% | |
| ! | TAAGATTTCAACTTCTGGAA+AGG | - | chr2_3:14991146-14991165 | Msa0280370:intron | 30.0% |
| ! | AGCAGTAAACTCTATGTTTT+GGG | - | chr2_3:14991220-14991239 | Msa0280370:intron | 30.0% |
| !!! | TTTCGTTTTGAAAACATGCA+TGG | - | chr2_3:14991272-14991291 | Msa0280370:intron | 30.0% |
| !!! | TTCGTTTTGAAAACATGCAT+GGG | - | chr2_3:14991273-14991292 | Msa0280370:intron | 30.0% |
| TTAAACAAGACTAGACAGTT+TGG | - | chr2_3:14991297-14991316 | Msa0280370:intron | 30.0% | |
| AAAATGCAACAACTTTGGAT+TGG | + | chr2_3:14991366-14991385 | None:intergenic | 30.0% | |
| AGATTTAGAGGTTAATGAGT+TGG | - | chr2_3:14991625-14991644 | Msa0280370:intron | 30.0% | |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr2_3:14991637-14991656 | Msa0280370:intron | 30.0% |
| GTTCTATCACAAACCATATT+TGG | + | chr2_3:14991653-14991672 | None:intergenic | 30.0% | |
| ! | TGGTTTGTGATAGAACATTA+TGG | - | chr2_3:14991657-14991676 | Msa0280370:intron | 30.0% |
| ! | TCTAAGCACTTTTCAATATC+CGG | + | chr2_3:14991922-14991941 | None:intergenic | 30.0% |
| GCACTTACAAGTTACAAATA+TGG | - | chr2_3:14992132-14992151 | Msa0280370:intron | 30.0% | |
| TACAAATATGGTCAATGAGT+TGG | - | chr2_3:14992144-14992163 | Msa0280370:intron | 30.0% | |
| GTTCTATCAAAGACCATATT+TGG | + | chr2_3:14992172-14992191 | None:intergenic | 30.0% | |
| TGGTCTTTGATAGAACATTA+TGG | - | chr2_3:14992176-14992195 | Msa0280370:intron | 30.0% | |
| TCTTTGATAGAACATTATGG+CGG | - | chr2_3:14992179-14992198 | Msa0280370:intron | 30.0% | |
| CTATTTACTACATCCTTAAG+AGG | - | chr2_3:14992304-14992323 | Msa0280370:intron | 30.0% | |
| AGAAAAGAAAATTGAAGGCA+TGG | + | chr2_3:14992556-14992575 | None:intergenic | 30.0% | |
| ! | ATGCCTTCAATTTTCTTTTC+TGG | - | chr2_3:14992555-14992574 | Msa0280370:intron | 30.0% |
| ! | TGCCTTCAATTTTCTTTTCT+GGG | - | chr2_3:14992556-14992575 | Msa0280370:intron | 30.0% |
| TACCCAGAAAAGAAAATTGA+AGG | + | chr2_3:14992561-14992580 | None:intergenic | 30.0% | |
| GATGATGAATCAACTATTAG+GGG | + | chr2_3:14992644-14992663 | None:intergenic | 30.0% | |
| GAGATGATGAATCAACTATT+AGG | + | chr2_3:14992646-14992665 | None:intergenic | 30.0% | |
| ! | AGTTCTAACTAGAAGAGTTT+AGG | + | chr2_3:14992931-14992950 | None:intergenic | 30.0% |
| TTCACTATACCTTGAATCAT+TGG | - | chr2_3:14993142-14993161 | Msa0280370:intron | 30.0% | |
| AATGGGAGTTAATTCTACAT+TGG | + | chr2_3:14993429-14993448 | None:intergenic | 30.0% | |
| !! | GTATTTCGGGTTTCTTTAAT+GGG | + | chr2_3:14993446-14993465 | None:intergenic | 30.0% |
| !! | AGTATTTCGGGTTTCTTTAA+TGG | + | chr2_3:14993447-14993466 | None:intergenic | 30.0% |
| AACATTGTCCAAGTTAGAAT+TGG | + | chr2_3:14993491-14993510 | None:intergenic | 30.0% | |
| TCAAAGTCCTCCATTAAATA+AGG | - | chr2_3:14993538-14993557 | Msa0280370:CDS | 30.0% | |
| !! | TAAGATGCCTTATTTAATGG+AGG | + | chr2_3:14993548-14993567 | None:intergenic | 30.0% |
| !! | CCTTAAGATGCCTTATTTAA+TGG | + | chr2_3:14993551-14993570 | None:intergenic | 30.0% |
| ! | CCATTAAATAAGGCATCTTA+AGG | - | chr2_3:14993548-14993567 | Msa0280370:CDS | 30.0% |
| AGCATGACCCTTATATTAAT+AGG | + | chr2_3:14993733-14993752 | None:intergenic | 30.0% | |
| ! | TAAAAAGTGCACGCTTATTA+AGG | - | chr2_3:14993752-14993771 | Msa0280370:intron | 30.0% |
| GCTTGTTTAGAAATCTAAAG+AGG | + | chr2_3:14993872-14993891 | None:intergenic | 30.0% | |
| AGTACTGTATGTTTAATGCT+AGG | + | chr2_3:14994011-14994030 | None:intergenic | 30.0% | |
| ! | CTCAAATTTGCATCTTGTTT+AGG | - | chr2_3:14994134-14994153 | Msa0280370:intron | 30.0% |
| ATTACGGATGTAACATCATT+TGG | + | chr2_3:14994165-14994184 | None:intergenic | 30.0% | |
| !!! | GTGTTGATAATTTTCTTGCA+GGG | + | chr2_3:14994262-14994281 | None:intergenic | 30.0% |
| !!! | AGTGTTGATAATTTTCTTGC+AGG | + | chr2_3:14994263-14994282 | None:intergenic | 30.0% |
| ! | GGAATTGATAATCGTTACTT+AGG | + | chr2_3:14994457-14994476 | None:intergenic | 30.0% |
| TTACACTACACAAAATGATG+AGG | + | chr2_3:14994478-14994497 | None:intergenic | 30.0% | |
| ! | TTATGTTTGACTTTGGATAC+AGG | - | chr2_3:14994605-14994624 | Msa0280370:intron | 30.0% |
| ! | AAACTGATTCTGTGTGTTTA+TGG | - | chr2_3:14994685-14994704 | Msa0280370:intron | 30.0% |
| GTTGGAATATTCATTAGAAG+AGG | - | chr2_3:14994725-14994744 | Msa0280370:intron | 30.0% | |
| !!! | AGGTACGTGTATTTTAGTTT+TGG | - | chr2_3:14994745-14994764 | Msa0280370:intron | 30.0% |
| !!! | GGTACGTGTATTTTAGTTTT+GGG | - | chr2_3:14994746-14994765 | Msa0280370:intron | 30.0% |
| ! | ACAATATGATTTTCTGTTGC+AGG | - | chr2_3:14994814-14994833 | Msa0280370:intron | 30.0% |
| !!! | TTGCTGATCTACTGTTTTTA+AGG | - | chr2_3:14994894-14994913 | Msa0280370:intron | 30.0% |
| !!! | TGCTGATCTACTGTTTTTAA+GGG | - | chr2_3:14994895-14994914 | Msa0280370:intron | 30.0% |
| ATAAGAATGCAAAGGAATGA+AGG | + | chr2_3:14995082-14995101 | None:intergenic | 30.0% | |
| CATTCCTTTGCATTCTTATT+AGG | - | chr2_3:14995083-14995102 | Msa0280370:intron | 30.0% | |
| CAATTGCTCGTGTTTATAAT+TGG | - | chr2_3:14995295-14995314 | Msa0280370:intron | 30.0% | |
| TTTGTCTTGTATGATCATAC+GGG | - | chr2_3:14995634-14995653 | Msa0280370:five_prime_UTR | 30.0% | |
| CAAACCTATCTCACTCAATT+AGG | - | chr2_3:14989974-14989993 | Msa0280370:three_prime_UTR | 35.0% | |
| !! | CTCTTGCTTTTCTTCAAGAA+AGG | - | chr2_3:14990014-14990033 | Msa0280370:three_prime_UTR | 35.0% |
| ! | GTGTGAAAGAGTATGTTTAG+CGG | - | chr2_3:14990269-14990288 | Msa0280370:intron | 35.0% |
| !!! | TTTTGGTTTGAATTTCGGAG+TGG | - | chr2_3:14990477-14990496 | Msa0280370:intron | 35.0% |
| ! | GCAAGGTGTTTCATTTCATA+TGG | + | chr2_3:14990776-14990795 | None:intergenic | 35.0% |
| ! | TTTTGTGTGAATGATGTCTG+AGG | - | chr2_3:14990918-14990937 | Msa0280370:intron | 35.0% |
| TCTGAGGATATATTTCTTGC+AGG | - | chr2_3:14990934-14990953 | Msa0280370:intron | 35.0% | |
| ! | TTGCATTTTTATGCCAGCAT+AGG | - | chr2_3:14991182-14991201 | Msa0280370:intron | 35.0% |
| ! | GAGCAGTAAACTCTATGTTT+TGG | - | chr2_3:14991219-14991238 | Msa0280370:intron | 35.0% |
| TGCAGAAAATGCAACAACTT+TGG | + | chr2_3:14991371-14991390 | None:intergenic | 35.0% | |
| CTACCCCAAATCAATTAGAA+AGG | + | chr2_3:14991444-14991463 | None:intergenic | 35.0% | |
| AGATGTTAGAAAACAGGCTT+AGG | - | chr2_3:14991475-14991494 | Msa0280370:intron | 35.0% | |
| ! | AAAACAGGCTTAGGTTGTTT+GGG | - | chr2_3:14991484-14991503 | Msa0280370:intron | 35.0% |
| AGTGCGAAGAGTAAATCATA+TGG | - | chr2_3:14991536-14991555 | Msa0280370:intron | 35.0% | |
| TAAATCATATGGAGGAGAGT+CGG | - | chr2_3:14991547-14991566 | Msa0280370:intron | 35.0% | |
| CATAGTAGTGACACTATTTG+TGG | - | chr2_3:14991877-14991896 | Msa0280370:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr2_3:14992156-14992175 | Msa0280370:intron | 35.0% |
| TGAGAAATCAGAACCTCTTA+AGG | + | chr2_3:14992320-14992339 | None:intergenic | 35.0% | |
| ! | TTGTTCTTGTTGTCACATGA+TGG | - | chr2_3:14992399-14992418 | Msa0280370:intron | 35.0% |
| TCAAGCCATTAACTTCTTCA+TGG | + | chr2_3:14992462-14992481 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCCTGCTGGAATT+TGG | - | chr2_3:14992604-14992623 | Msa0280370:intron | 35.0% |
| ! | CTCTTCTAGTTAGAACTCTT+TGG | - | chr2_3:14992934-14992953 | Msa0280370:intron | 35.0% |
| AAGAACAGACCAATGATTCA+AGG | + | chr2_3:14993154-14993173 | None:intergenic | 35.0% | |
| !! | CGTAAAAGCATTAGTTAAGG+AGG | + | chr2_3:14993182-14993201 | None:intergenic | 35.0% |
| !! | GCTCGTAAAAGCATTAGTTA+AGG | + | chr2_3:14993185-14993204 | None:intergenic | 35.0% |
| ! | GTCATAAATGAGTTGGACAT+GGG | + | chr2_3:14993216-14993235 | None:intergenic | 35.0% |
| ! | TGTCATAAATGAGTTGGACA+TGG | + | chr2_3:14993217-14993236 | None:intergenic | 35.0% |
| ! | CAGTCTTGTCATAAATGAGT+TGG | + | chr2_3:14993223-14993242 | None:intergenic | 35.0% |
| TGACATCTACAGGAATGATA+TGG | + | chr2_3:14993246-14993265 | None:intergenic | 35.0% | |
| ATGATTAGAGTGACATCTAC+AGG | + | chr2_3:14993256-14993275 | None:intergenic | 35.0% | |
| ATCCTTCACAAAATTGGCTA+CGG | - | chr2_3:14993332-14993351 | Msa0280370:intron | 35.0% | |
| AACACAGCGTTGTCAAATAT+CGG | + | chr2_3:14993379-14993398 | None:intergenic | 35.0% | |
| GGATAATACTCCACACTTAA+GGG | + | chr2_3:14993470-14993489 | None:intergenic | 35.0% | |
| TGGATAATACTCCACACTTA+AGG | + | chr2_3:14993471-14993490 | None:intergenic | 35.0% | |
| ! | AGGACGTTTTATCTTGGAAA+CGG | + | chr2_3:14993852-14993871 | None:intergenic | 35.0% |
| ! | CTAAAGAGGACGTTTTATCT+TGG | + | chr2_3:14993858-14993877 | None:intergenic | 35.0% |
| AATGCTAACAAGTGACCTAA+GGG | + | chr2_3:14993896-14993915 | None:intergenic | 35.0% | |
| AAATGCTAACAAGTGACCTA+AGG | + | chr2_3:14993897-14993916 | None:intergenic | 35.0% | |
| TCCGTAATGTAGAATGTGAA+TGG | - | chr2_3:14994177-14994196 | Msa0280370:intron | 35.0% | |
| CCCATTCACATTCTACATTA+CGG | + | chr2_3:14994181-14994200 | None:intergenic | 35.0% | |
| CCGTAATGTAGAATGTGAAT+GGG | - | chr2_3:14994178-14994197 | Msa0280370:intron | 35.0% | |
| TTGTATGTTAGTCCTGGAAA+GGG | + | chr2_3:14994233-14994252 | None:intergenic | 35.0% | |
| ! | ATAATTTTCTTGCAGGGTAG+GGG | + | chr2_3:14994256-14994275 | None:intergenic | 35.0% |
| ! | GATAATTTTCTTGCAGGGTA+GGG | + | chr2_3:14994257-14994276 | None:intergenic | 35.0% |
| ! | TGATAATTTTCTTGCAGGGT+AGG | + | chr2_3:14994258-14994277 | None:intergenic | 35.0% |
| TGAAAACTAAGGTTTGTGAG+TGG | - | chr2_3:14994378-14994397 | Msa0280370:intron | 35.0% | |
| TAGTTACTGCTAGTATGCTA+TGG | - | chr2_3:14994421-14994440 | Msa0280370:intron | 35.0% | |
| TGCATCATAAGGCTTCAAAA+TGG | + | chr2_3:14994516-14994535 | None:intergenic | 35.0% | |
| AGCAACAAGAACTTCTAAAC+TGG | + | chr2_3:14994879-14994898 | None:intergenic | 35.0% | |
| CTTGCCTAATAAGAATGCAA+AGG | + | chr2_3:14995090-14995109 | None:intergenic | 35.0% | |
| TATCCCAGATGCATCTATAA+GGG | + | chr2_3:14995191-14995210 | None:intergenic | 35.0% | |
| ATATCCCAGATGCATCTATA+AGG | + | chr2_3:14995192-14995211 | None:intergenic | 35.0% | |
| ATAATTGGGATGTCCATCAA+CGG | - | chr2_3:14995310-14995329 | Msa0280370:intron | 35.0% | |
| CCTATCCTAGAAACTACTTT+GGG | + | chr2_3:14995516-14995535 | None:intergenic | 35.0% | |
| TCCTATCCTAGAAACTACTT+TGG | + | chr2_3:14995517-14995536 | None:intergenic | 35.0% | |
| GTGTATTCTACTCTGCAATT+TGG | - | chr2_3:14995656-14995675 | Msa0280370:five_prime_UTR | 35.0% | |
| TTCTTCGTCTTCATCATCAG+CGG | - | chr2_3:14989904-14989923 | Msa0280370:three_prime_UTR | 40.0% | |
| GAGACCTAATTGAGTGAGAT+AGG | + | chr2_3:14989981-14990000 | None:intergenic | 40.0% | |
| TTATGAAGTGTATGGGGAGT+TGG | - | chr2_3:14990219-14990238 | Msa0280370:intron | 40.0% | |
| TATGGGGAGTTGGATTTGTA+TGG | - | chr2_3:14990229-14990248 | Msa0280370:intron | 40.0% | |
| GTTAACTGCTTCTGTATCAC+TGG | - | chr2_3:14990592-14990611 | Msa0280370:CDS | 40.0% | |
| !! | TATGTTTTGGGCTCGTGTTA+TGG | - | chr2_3:14991232-14991251 | Msa0280370:intron | 40.0% |
| !! | ATGTTTTGGGCTCGTGTTAT+GGG | - | chr2_3:14991233-14991252 | Msa0280370:intron | 40.0% |
| ! | GAAAACAGGCTTAGGTTGTT+TGG | - | chr2_3:14991483-14991502 | Msa0280370:intron | 40.0% |
| GCGAAGAGTAAATCATATGG+AGG | - | chr2_3:14991539-14991558 | Msa0280370:intron | 40.0% | |
| AGTCGGATCAAAAAAGGTAG+AGG | - | chr2_3:14991564-14991583 | Msa0280370:intron | 40.0% | |
| AAACCTTATCCCACTAAGTG+GGG | + | chr2_3:14991706-14991725 | None:intergenic | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | + | chr2_3:14991707-14991726 | None:intergenic | 40.0% | |
| CACACACACAGAATAGCATT+TGG | + | chr2_3:14991830-14991849 | None:intergenic | 40.0% | |
| AGTAGTGACACTATTTGTGG+TGG | - | chr2_3:14991880-14991899 | Msa0280370:intron | 40.0% | |
| ATACCTCTAGACAAAAGGCA+TGG | + | chr2_3:14992373-14992392 | None:intergenic | 40.0% | |
| GTCGTCCATGAAGAAGTTAA+TGG | - | chr2_3:14992454-14992473 | Msa0280370:intron | 40.0% | |
| !!! | GAAAACGTTTTTTTGCCTGC+TGG | - | chr2_3:14992597-14992616 | Msa0280370:intron | 40.0% |
| ATCAATAGCCAAATTCCAGC+AGG | + | chr2_3:14992615-14992634 | None:intergenic | 40.0% | |
| GTACTCATGAACAGAACAAC+AGG | - | chr2_3:14992852-14992871 | Msa0280370:intron | 40.0% | |
| CAACTAGTGACAAAAGGCTT+TGG | + | chr2_3:14993030-14993049 | None:intergenic | 40.0% | |
| ! | CAAAGCCTTTTGTCACTAGT+TGG | - | chr2_3:14993028-14993047 | Msa0280370:intron | 40.0% |
| CAACACCAACTAGTGACAAA+AGG | + | chr2_3:14993036-14993055 | None:intergenic | 40.0% | |
| !! | CTTTTGTCACTAGTTGGTGT+TGG | - | chr2_3:14993034-14993053 | Msa0280370:intron | 40.0% |
| ACGATACATGATAGGACATC+GGG | + | chr2_3:14993080-14993099 | None:intergenic | 40.0% | |
| CACGATACATGATAGGACAT+CGG | + | chr2_3:14993081-14993100 | None:intergenic | 40.0% | |
| TGTCCTATCATGTATCGTGT+CGG | - | chr2_3:14993082-14993101 | Msa0280370:intron | 40.0% | |
| ! | GAATCATTGGTCTGTTCTTC+CGG | - | chr2_3:14993155-14993174 | Msa0280370:intron | 40.0% |
| AAGCATTAGTTAAGGAGGAC+CGG | + | chr2_3:14993177-14993196 | None:intergenic | 40.0% | |
| ! | AATTTTGTGAAGGATGGAGG+CGG | + | chr2_3:14993327-14993346 | None:intergenic | 40.0% |
| ! | GTAGCCAATTTTGTGAAGGA+TGG | + | chr2_3:14993333-14993352 | None:intergenic | 40.0% |
| !!! | AAATATCGGTGGTGGGTTTT+TGG | + | chr2_3:14993365-14993384 | None:intergenic | 40.0% |
| !! | CACACTTAAGGGAGTATTTC+GGG | + | chr2_3:14993459-14993478 | None:intergenic | 40.0% |
| !! | CCACACTTAAGGGAGTATTT+CGG | + | chr2_3:14993460-14993479 | None:intergenic | 40.0% |
| ATTTCTAAACAAGCGCCCTT+AGG | - | chr2_3:14993878-14993897 | Msa0280370:intron | 40.0% | |
| GAGTTGTTCAAACTCTGTGA+AGG | + | chr2_3:14994034-14994053 | None:intergenic | 40.0% | |
| GTTGTATGTTAGTCCTGGAA+AGG | + | chr2_3:14994234-14994253 | None:intergenic | 40.0% | |
| !!! | GGAACTTATTGCCGATTTTG+AGG | - | chr2_3:14994626-14994645 | Msa0280370:intron | 40.0% |
| CACAGAATCAGTTTCTTCGA+TGG | + | chr2_3:14994679-14994698 | None:intergenic | 40.0% | |
| TGATTCTGTGTGTTTATGGC+TGG | - | chr2_3:14994689-14994708 | Msa0280370:intron | 40.0% | |
| GATTCTGTGTGTTTATGGCT+GGG | - | chr2_3:14994690-14994709 | Msa0280370:intron | 40.0% | |
| TGCTCTTCTACAGAAAAACC+TGG | - | chr2_3:14994841-14994860 | Msa0280370:intron | 40.0% | |
| AGACCTGAGTAATTGTCGTT+TGG | + | chr2_3:14994922-14994941 | None:intergenic | 40.0% | |
| TATGTTAACATCAGAGGGAG+AGG | - | chr2_3:14995005-14995024 | Msa0280370:intron | 40.0% | |
| ATGTTAACATCAGAGGGAGA+GGG | - | chr2_3:14995006-14995025 | Msa0280370:intron | 40.0% | |
| ! | AAATGTGCTGCTGCAGTTTA+TGG | + | chr2_3:14995058-14995077 | None:intergenic | 40.0% |
| ACACCCTTATAGATGCATCT+GGG | - | chr2_3:14995185-14995204 | Msa0280370:intron | 40.0% | |
| GACGCATAATCTAAGCTGAA+CGG | + | chr2_3:14995429-14995448 | None:intergenic | 40.0% | |
| GTTTGCCCAAAGTAGTTTCT+AGG | - | chr2_3:14995508-14995527 | Msa0280370:CDS | 40.0% | |
| !! | CCCAAAGTAGTTTCTAGGAT+AGG | - | chr2_3:14995513-14995532 | Msa0280370:CDS | 40.0% |
| CGATTGCAGTGCTTCAACAA+TGG | - | chr2_3:14989877-14989896 | Msa0280370:three_prime_UTR | 45.0% | |
| ACAGAACGAAGAGGAATACC+AGG | - | chr2_3:14989929-14989948 | Msa0280370:three_prime_UTR | 45.0% | |
| CGACAAGTTAGTATCGTGTC+CGG | - | chr2_3:14990295-14990314 | Msa0280370:intron | 45.0% | |
| !! | CGAAGTACTGACATAGACAC+CGG | + | chr2_3:14990317-14990336 | None:intergenic | 45.0% |
| ! | GGTAGCTTGCAATGTGAATG+AGG | - | chr2_3:14990645-14990664 | Msa0280370:intron | 45.0% |
| TTGCAGGCTTCAGCAATACA+AGG | - | chr2_3:14990950-14990969 | Msa0280370:intron | 45.0% | |
| GAGGAGAGTCGGATCAAAAA+AGG | - | chr2_3:14991558-14991577 | Msa0280370:intron | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | + | chr2_3:14991708-14991727 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | - | chr2_3:14991705-14991724 | Msa0280370:intron | 45.0% | |
| ! | CACTATTTGTGGTGGTTTGC+AGG | - | chr2_3:14991888-14991907 | Msa0280370:intron | 45.0% |
| ! | TGGTTTGCAGGCTAAGATAC+CGG | - | chr2_3:14991900-14991919 | Msa0280370:intron | 45.0% |
| TGCGACTTTGCAAGCAAAGA+AGG | - | chr2_3:14991948-14991967 | Msa0280370:intron | 45.0% | |
| GCGACTTTGCAAGCAAAGAA+GGG | - | chr2_3:14991949-14991968 | Msa0280370:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr2_3:14992225-14992244 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr2_3:14992226-14992245 | None:intergenic | 45.0% |
| ! | TGACCATGCCTTTTGTCTAG+AGG | - | chr2_3:14992367-14992386 | Msa0280370:intron | 45.0% |
| TCTTCATGGACGACACAAAC+AGG | + | chr2_3:14992448-14992467 | None:intergenic | 45.0% | |
| GCATCGTGAAGTCCTAGAAA+AGG | - | chr2_3:14992781-14992800 | Msa0280370:intron | 45.0% | |
| CTTGTGCACTAATGTGCAGA+TGG | + | chr2_3:14992960-14992979 | None:intergenic | 45.0% | |
| CATCCGACACGATACATGAT+AGG | + | chr2_3:14993088-14993107 | None:intergenic | 45.0% | |
| !!! | CAGTTTTTGGCTCTCTGTCA+TGG | + | chr2_3:14993295-14993314 | None:intergenic | 45.0% |
| GCCTCCATCCTTCACAAAAT+TGG | - | chr2_3:14993326-14993345 | Msa0280370:intron | 45.0% | |
| ! | GCCAATTTTGTGAAGGATGG+AGG | + | chr2_3:14993330-14993349 | None:intergenic | 45.0% |
| CTTCACAAAATTGGCTACGG+CGG | - | chr2_3:14993335-14993354 | Msa0280370:intron | 45.0% | |
| CGTTGTCAAATATCGGTGGT+GGG | + | chr2_3:14993372-14993391 | None:intergenic | 45.0% | |
| ACAGCGTTGTCAAATATCGG+TGG | + | chr2_3:14993376-14993395 | None:intergenic | 45.0% | |
| CCGAAATACTCCCTTAAGTG+TGG | - | chr2_3:14993457-14993476 | Msa0280370:intron | 45.0% | |
| TAGGTAAAATCGTCCAGAGG+GGG | + | chr2_3:14993992-14994011 | None:intergenic | 45.0% | |
| CTAGGTAAAATCGTCCAGAG+GGG | + | chr2_3:14993993-14994012 | None:intergenic | 45.0% | |
| GCTAGGTAAAATCGTCCAGA+GGG | + | chr2_3:14993994-14994013 | None:intergenic | 45.0% | |
| TGCTAGGTAAAATCGTCCAG+AGG | + | chr2_3:14993995-14994014 | None:intergenic | 45.0% | |
| AGAATGTGAATGGGTGTGCT+TGG | - | chr2_3:14994187-14994206 | Msa0280370:intron | 45.0% | |
| TAGGGGTTGTATGTTAGTCC+TGG | + | chr2_3:14994239-14994258 | None:intergenic | 45.0% | |
| TGCTAGTATGCTATGGACTC+TGG | - | chr2_3:14994428-14994447 | Msa0280370:intron | 45.0% | |
| GCCTTCTGACACCTCAAAAT+CGG | + | chr2_3:14994640-14994659 | None:intergenic | 45.0% | |
| GCTGGGAGCAAATGTTATGT+TGG | - | chr2_3:14994707-14994726 | Msa0280370:intron | 45.0% | |
| !! | AACTGGCTCTAGCATTATCC+AGG | + | chr2_3:14994862-14994881 | None:intergenic | 45.0% |
| GGACCAAACGACAATTACTC+AGG | - | chr2_3:14994916-14994935 | Msa0280370:intron | 45.0% | |
| TGTTAACATCAGAGGGAGAG+GGG | - | chr2_3:14995007-14995026 | Msa0280370:intron | 45.0% | |
| !! | TCTATAAGGGTGTCCATGGT+AGG | + | chr2_3:14995178-14995197 | None:intergenic | 45.0% |
| !! | TGCATCTATAAGGGTGTCCA+TGG | + | chr2_3:14995182-14995201 | None:intergenic | 45.0% |
| GACACCCTTATAGATGCATC+TGG | - | chr2_3:14995184-14995203 | Msa0280370:intron | 45.0% | |
| CTTGTTGAGTTCTCCGTTGA+TGG | + | chr2_3:14995326-14995345 | None:intergenic | 45.0% | |
| TTCCTTCCTGTCTGTAGTTC+TGG | - | chr2_3:14995486-14995505 | Msa0280370:CDS | 45.0% | |
| AACCAGAACTACAGACAGGA+AGG | + | chr2_3:14995491-14995510 | None:intergenic | 45.0% | |
| !! | ATATATATATAAAAAAGAAA+TGG | + | chr2_3:14995541-14995560 | None:intergenic | 5.0% |
| TCTTCAACGAACTGAGCACC+TGG | + | chr2_3:14989950-14989969 | None:intergenic | 50.0% | |
| TTTATGCCAGCATAGGCTGC+TGG | - | chr2_3:14991189-14991208 | Msa0280370:intron | 50.0% | |
| GGTTGTTTGGGCATGTAGAG+AGG | - | chr2_3:14991496-14991515 | Msa0280370:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr2_3:14991702-14991721 | None:intergenic | 50.0% | |
| ! | TTGCAAGCAAAGAAGGGCAC+CGG | - | chr2_3:14991955-14991974 | Msa0280370:intron | 50.0% |
| AGTCCTCAAACGAACCTCAC+CGG | + | chr2_3:14991977-14991996 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr2_3:14991702-14991721 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr2_3:14992227-14992246 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr2_3:14992224-14992243 | Msa0280370:intron | 50.0% | |
| ! | GAGTTGGACATGGGTTGAGA+CGG | + | chr2_3:14993207-14993226 | None:intergenic | 50.0% |
| CTCTCTGTCATGGACAACAC+TGG | + | chr2_3:14993285-14993304 | None:intergenic | 50.0% | |
| ! | GCGGCTGGTATGACAGTTTT+TGG | + | chr2_3:14993308-14993327 | None:intergenic | 50.0% |
| ! | CGCCGTAGCCAATTTTGTGA+AGG | + | chr2_3:14993337-14993356 | None:intergenic | 50.0% |
| GCGTTGTCAAATATCGGTGG+TGG | + | chr2_3:14993373-14993392 | None:intergenic | 50.0% | |
| TTATTGCATCATCCCCCCTC+TGG | - | chr2_3:14993976-14993995 | Msa0280370:intron | 50.0% | |
| AGGTAAAATCGTCCAGAGGG+GGG | + | chr2_3:14993991-14994010 | None:intergenic | 50.0% | |
| TGTTAGTCCTGGAAAGGGTG+CGG | + | chr2_3:14994228-14994247 | None:intergenic | 50.0% | |
| !!! | GCCGATTTTGAGGTGTCAGA+AGG | - | chr2_3:14994636-14994655 | Msa0280370:intron | 50.0% |
| GGCAAACCAGAACTACAGAC+AGG | + | chr2_3:14995495-14995514 | None:intergenic | 50.0% | |
| TCAGCGGTGACAGAACGAAG+AGG | - | chr2_3:14989920-14989939 | Msa0280370:three_prime_UTR | 55.0% | |
| TTTCAGCCAGCAGCCTATGC+TGG | + | chr2_3:14991198-14991217 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr2_3:14991694-14991713 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr2_3:14991693-14991712 | Msa0280370:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr2_3:14991694-14991713 | Msa0280370:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr2_3:14991700-14991719 | Msa0280370:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr2_3:14991694-14991713 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr2_3:14991693-14991712 | Msa0280370:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr2_3:14991694-14991713 | Msa0280370:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr2_3:14991700-14991719 | Msa0280370:intron | 55.0% | |
| CATGGTAGGCATGAAGCTGG+AGG | + | chr2_3:14995164-14995183 | None:intergenic | 55.0% | |
| CTCCAGCTTCATGCCTACCA+TGG | - | chr2_3:14995162-14995181 | Msa0280370:intron | 55.0% | |
| GTCCATGGTAGGCATGAAGC+TGG | + | chr2_3:14995167-14995186 | None:intergenic | 55.0% | |
| TGAAGCTCCTCGCGCAGCAA+AGG | - | chr2_3:14990982-14991001 | Msa0280370:intron | 60.0% | |
| GAAGCTCCTCGCGCAGCAAA+GGG | - | chr2_3:14990983-14991002 | Msa0280370:intron | 60.0% | |
| GAAGTTCCCTTTGCTGCGCG+AGG | + | chr2_3:14990992-14991011 | None:intergenic | 60.0% | |
| CGCGCAGCAAAGGGAACTTC+AGG | - | chr2_3:14990992-14991011 | Msa0280370:intron | 60.0% | |
| !! | AGCAAAGAAGGGCACCGGTG+AGG | - | chr2_3:14991960-14991979 | Msa0280370:intron | 60.0% |
| ! | GCACCGGTGAGGTTCGTTTG+AGG | - | chr2_3:14991971-14991990 | Msa0280370:intron | 60.0% |
| TTGTGAAGGATGGAGGCGGC+TGG | + | chr2_3:14993323-14993342 | None:intergenic | 60.0% | |
| GTTCAAGCCGCACCCTTTCC+AGG | - | chr2_3:14994218-14994237 | Msa0280370:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 14989788 | 14995706 | 14989788 | ID=Msa0280370;Name=Msa0280370 |
| chr2_3 | mRNA | 14989788 | 14995706 | 14989788 | ID=Msa0280370-mRNA-1;Parent=Msa0280370;Name=Msa0280370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=108|1|1|1|1|1|6|329|192 |
| chr2_3 | exon | 14989788 | 14990203 | 14989788 | ID=Msa0280370-mRNA-1:exon:6301;Parent=Msa0280370-mRNA-1 |
| chr2_3 | exon | 14990557 | 14990658 | 14990557 | ID=Msa0280370-mRNA-1:exon:6300;Parent=Msa0280370-mRNA-1 |
| chr2_3 | exon | 14990748 | 14990867 | 14990748 | ID=Msa0280370-mRNA-1:exon:6299;Parent=Msa0280370-mRNA-1 |
| chr2_3 | exon | 14993513 | 14993584 | 14993513 | ID=Msa0280370-mRNA-1:exon:6298;Parent=Msa0280370-mRNA-1 |
| chr2_3 | exon | 14994481 | 14994538 | 14994481 | ID=Msa0280370-mRNA-1:exon:6297;Parent=Msa0280370-mRNA-1 |
| chr2_3 | exon | 14995459 | 14995706 | 14995459 | ID=Msa0280370-mRNA-1:exon:6296;Parent=Msa0280370-mRNA-1 |
| chr2_3 | five_prime_UTR | 14995599 | 14995706 | 14995599 | ID=Msa0280370-mRNA-1:five_prime_utr;Parent=Msa0280370-mRNA-1 |
| chr2_3 | CDS | 14995459 | 14995598 | 14995459 | ID=Msa0280370-mRNA-1:cds;Parent=Msa0280370-mRNA-1 |
| chr2_3 | CDS | 14994481 | 14994538 | 14994481 | ID=Msa0280370-mRNA-1:cds;Parent=Msa0280370-mRNA-1 |
| chr2_3 | CDS | 14993513 | 14993584 | 14993513 | ID=Msa0280370-mRNA-1:cds;Parent=Msa0280370-mRNA-1 |
| chr2_3 | CDS | 14990748 | 14990867 | 14990748 | ID=Msa0280370-mRNA-1:cds;Parent=Msa0280370-mRNA-1 |
| chr2_3 | CDS | 14990557 | 14990658 | 14990557 | ID=Msa0280370-mRNA-1:cds;Parent=Msa0280370-mRNA-1 |
| chr2_3 | CDS | 14990117 | 14990203 | 14990117 | ID=Msa0280370-mRNA-1:cds;Parent=Msa0280370-mRNA-1 |
| chr2_3 | three_prime_UTR | 14989788 | 14990116 | 14989788 | ID=Msa0280370-mRNA-1:three_prime_utr;Parent=Msa0280370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
