Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842000 | XP_003612958.1 | 94.944 | 178 | 8 | 1 | 1 | 177 | 62 | 239 | 2.14e-117 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842000 | sp|Q9SZJ6|AGL21_ARATH | 53.143 | 175 | 72 | 3 | 1 | 174 | 62 | 227 | 6.86e-53 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842000 | A9YWS1 | 94.944 | 178 | 8 | 1 | 1 | 177 | 62 | 239 | 1.02e-117 | 342 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040210 | Msa0842000 | 0.825303 | 5.045732e-54 | -8.615850e-47 |
| Msa0720870 | Msa0842000 | 0.835250 | 1.871464e-56 | -8.615850e-47 |
| Msa0761420 | Msa0842000 | 0.828984 | 6.633256e-55 | -8.615850e-47 |
| Msa0803940 | Msa0842000 | 0.853442 | 2.383812e-61 | -8.615850e-47 |
| Msa0842000 | Msa1022510 | 0.800424 | 1.450967e-48 | -8.615850e-47 |
| Msa0842000 | Msa1106680 | 0.812625 | 3.858948e-51 | -8.615850e-47 |
| Msa0374040 | Msa0842000 | 0.800044 | 1.733571e-48 | -8.615850e-47 |
| Msa0496070 | Msa0842000 | 0.813533 | 2.439444e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842000 | MtrunA17_Chr5g0411691 | 94.944 | 178 | 8 | 1 | 1 | 177 | 62 | 239 | 1.97e-121 | 342 |
| Msa0842000 | MtrunA17_Chr2g0279821 | 57.803 | 173 | 66 | 3 | 1 | 171 | 62 | 229 | 4.12e-59 | 184 |
| Msa0842000 | MtrunA17_Chr5g0427961 | 53.143 | 175 | 62 | 4 | 1 | 173 | 6 | 162 | 7.14e-53 | 166 |
| Msa0842000 | MtrunA17_Chr4g0049541 | 47.273 | 165 | 83 | 4 | 1 | 164 | 62 | 223 | 5.94e-38 | 129 |
| Msa0842000 | MtrunA17_Chr2g0284911 | 35.455 | 110 | 69 | 1 | 1 | 108 | 77 | 186 | 4.24e-14 | 68.2 |
| Msa0842000 | MtrunA17_Chr8g0380021 | 34.234 | 111 | 71 | 1 | 1 | 109 | 78 | 188 | 2.56e-13 | 65.9 |
| Msa0842000 | MtrunA17_Chr3g0077501 | 35.135 | 111 | 70 | 1 | 1 | 109 | 62 | 172 | 9.34e-13 | 63.9 |
| Msa0842000 | MtrunA17_Chr4g0061691 | 34.951 | 103 | 65 | 1 | 1 | 101 | 63 | 165 | 4.30e-12 | 62.4 |
| Msa0842000 | MtrunA17_Chr2g0308271 | 33.636 | 110 | 71 | 1 | 1 | 108 | 34 | 143 | 5.20e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842000 | AT4G37940.2 | 53.143 | 175 | 72 | 3 | 1 | 174 | 1 | 166 | 7.60e-55 | 171 |
| Msa0842000 | AT4G37940.1 | 53.143 | 175 | 72 | 3 | 1 | 174 | 62 | 227 | 6.97e-54 | 171 |
| Msa0842000 | AT2G22630.1 | 51.724 | 174 | 75 | 3 | 1 | 173 | 62 | 227 | 8.98e-54 | 171 |
| Msa0842000 | AT2G22630.2 | 51.724 | 174 | 75 | 3 | 1 | 173 | 62 | 227 | 8.98e-54 | 171 |
| Msa0842000 | AT3G57230.5 | 52.299 | 174 | 77 | 5 | 1 | 173 | 28 | 196 | 8.02e-51 | 162 |
| Msa0842000 | AT3G57230.3 | 52.299 | 174 | 77 | 5 | 1 | 173 | 28 | 196 | 8.02e-51 | 162 |
| Msa0842000 | AT3G57230.1 | 52.299 | 174 | 77 | 5 | 1 | 173 | 62 | 230 | 9.30e-51 | 163 |
| Msa0842000 | AT3G57230.4 | 52.299 | 174 | 77 | 5 | 1 | 173 | 62 | 230 | 9.30e-51 | 163 |
| Msa0842000 | AT4G37940.4 | 48.000 | 175 | 67 | 3 | 1 | 174 | 62 | 213 | 8.99e-43 | 142 |
| Msa0842000 | AT2G14210.1 | 56.800 | 125 | 53 | 1 | 1 | 124 | 63 | 187 | 9.44e-35 | 122 |
| Msa0842000 | AT2G14210.2 | 56.800 | 125 | 53 | 1 | 1 | 124 | 63 | 187 | 1.18e-34 | 122 |
| Msa0842000 | AT4G37940.3 | 68.750 | 80 | 24 | 1 | 1 | 79 | 62 | 141 | 1.00e-31 | 112 |
| Msa0842000 | AT3G57230.2 | 64.286 | 84 | 29 | 1 | 1 | 83 | 62 | 145 | 4.26e-30 | 107 |
| Msa0842000 | AT4G09960.1 | 32.867 | 143 | 93 | 2 | 1 | 140 | 62 | 204 | 8.45e-16 | 72.8 |
| Msa0842000 | AT4G09960.6 | 32.867 | 143 | 93 | 2 | 1 | 140 | 63 | 205 | 9.81e-16 | 72.4 |
| Msa0842000 | AT4G09960.5 | 32.867 | 143 | 93 | 2 | 1 | 140 | 72 | 214 | 1.05e-15 | 72.8 |
| Msa0842000 | AT4G09960.3 | 32.867 | 143 | 93 | 2 | 1 | 140 | 88 | 230 | 1.27e-15 | 72.8 |
| Msa0842000 | AT4G18960.4 | 35.714 | 112 | 70 | 1 | 1 | 110 | 64 | 175 | 8.91e-14 | 66.2 |
| Msa0842000 | AT4G18960.1 | 35.455 | 110 | 69 | 1 | 1 | 108 | 78 | 187 | 9.56e-14 | 67.4 |
| Msa0842000 | AT4G18960.3 | 35.455 | 110 | 69 | 1 | 1 | 108 | 64 | 173 | 1.04e-13 | 67.0 |
| Msa0842000 | AT4G18960.2 | 35.455 | 110 | 69 | 1 | 1 | 108 | 64 | 173 | 1.04e-13 | 67.0 |
| Msa0842000 | AT4G09960.4 | 33.784 | 148 | 87 | 4 | 1 | 139 | 157 | 302 | 1.10e-13 | 68.2 |
| Msa0842000 | AT4G09960.2 | 32.168 | 143 | 80 | 3 | 1 | 140 | 62 | 190 | 1.18e-12 | 63.9 |
| Msa0842000 | AT2G42830.1 | 28.902 | 173 | 98 | 6 | 1 | 164 | 77 | 233 | 1.39e-12 | 64.3 |
| Msa0842000 | AT2G42830.2 | 28.571 | 175 | 98 | 6 | 1 | 164 | 77 | 235 | 1.57e-12 | 63.9 |
| Msa0842000 | AT1G26310.1 | 32.800 | 125 | 76 | 3 | 1 | 117 | 63 | 187 | 6.24e-12 | 62.4 |
| Msa0842000 | AT2G45650.1 | 35.106 | 94 | 60 | 1 | 1 | 93 | 62 | 155 | 1.56e-11 | 61.2 |
| Msa0842000 | AT1G69120.3 | 32.727 | 110 | 72 | 2 | 1 | 108 | 1 | 110 | 2.06e-11 | 60.1 |
| Msa0842000 | AT1G69120.2 | 32.727 | 110 | 72 | 2 | 1 | 108 | 63 | 172 | 3.61e-11 | 60.1 |
| Msa0842000 | AT1G69120.1 | 32.727 | 110 | 72 | 2 | 1 | 108 | 63 | 172 | 3.79e-11 | 60.5 |
| Msa0842000 | AT3G61120.1 | 36.667 | 90 | 57 | 0 | 4 | 93 | 65 | 154 | 3.82e-11 | 60.1 |
| Msa0842000 | AT5G60910.2 | 24.571 | 175 | 119 | 3 | 1 | 162 | 1 | 175 | 3.95e-11 | 59.3 |
| Msa0842000 | AT3G58780.5 | 31.250 | 112 | 71 | 2 | 1 | 108 | 83 | 192 | 8.02e-11 | 59.3 |
| Msa0842000 | AT5G60910.1 | 25.309 | 162 | 112 | 2 | 1 | 153 | 63 | 224 | 8.85e-11 | 59.3 |
| Msa0842000 | AT3G58780.1 | 31.250 | 112 | 71 | 2 | 1 | 108 | 77 | 186 | 9.04e-11 | 59.3 |
Find 32 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGGGAGAACAGCTTTA+TGG | 0.252080 | 5_4:-18844482 | Msa0842000:CDS |
| GTTGATTCTCTAGGTCTTGT+AGG | 0.264680 | 5_4:+18844444 | None:intergenic |
| CATACCTTGACTTCAGATTC+TGG | 0.269362 | 5_4:+18845368 | None:intergenic |
| ATTCTGGATTTGTCCCTTGT+TGG | 0.336243 | 5_4:+18845384 | None:intergenic |
| AAACACACAACTACACAAAA+AGG | 0.340273 | 5_4:-18844105 | Msa0842000:intron |
| TTACCTTTCGGTTCAGCTCT+TGG | 0.342679 | 5_4:+18844278 | None:intergenic |
| CCAAGGAGTTCGCATGAAAA+AGG | 0.352891 | 5_4:-18844408 | Msa0842000:intron |
| CAATTTCCATACGGTGTTCA+TGG | 0.363241 | 5_4:-18843782 | Msa0842000:CDS |
| TTGAGTTCATAGGCAATTGA+TGG | 0.413482 | 5_4:-18844498 | Msa0842000:intron |
| CACAATATTCTTGCTCAGGC+TGG | 0.421967 | 5_4:+18843720 | None:intergenic |
| GTCTCACAATATTCTTGCTC+AGG | 0.460316 | 5_4:+18843716 | None:intergenic |
| ATTGAAATGTCGTAGGTGTA+TGG | 0.485215 | 5_4:-18843851 | Msa0842000:intron |
| ACAAGACCTAGAGAATCAAC+TGG | 0.503105 | 5_4:-18844441 | Msa0842000:CDS |
| TAAGTTCCAGTTGATTCTCT+AGG | 0.509792 | 5_4:+18844435 | None:intergenic |
| ACAGGGAAACATAATCCATC+AGG | 0.520605 | 5_4:-18844171 | Msa0842000:intron |
| CATAATCCATCAGGAAAATG+TGG | 0.527713 | 5_4:-18844162 | Msa0842000:CDS |
| CCATACGGTGTTCATGGAGG+AGG | 0.529836 | 5_4:-18843776 | Msa0842000:CDS |
| CCTCCTCCATGAACACCGTA+TGG | 0.536688 | 5_4:+18843776 | None:intergenic |
| TGAGTTCATAGGCAATTGAT+GGG | 0.544313 | 5_4:-18844497 | Msa0842000:intron |
| CAAGAATATTGTGAGACCTC+AGG | 0.548980 | 5_4:-18843710 | Msa0842000:CDS |
| AAATGTGGAGCTCTATAAGA+AGG | 0.555562 | 5_4:-18844147 | Msa0842000:CDS |
| GCATTTGTTCAATTTCCATA+CGG | 0.559750 | 5_4:-18843791 | Msa0842000:CDS |
| TGTTGCACTTGCACTGCCTG+AGG | 0.561931 | 5_4:+18843694 | None:intergenic |
| AAATCCAGAATCTGAAGTCA+AGG | 0.573093 | 5_4:-18845372 | Msa0842000:intron |
| CAACTGGAACTTAGCCTCCA+AGG | 0.574769 | 5_4:-18844425 | Msa0842000:CDS |
| AAAGTCTACAAGAAAACCAT+AGG | 0.574987 | 5_4:-18844600 | Msa0842000:intron |
| TGAGAGATATAACATTTGCA+AGG | 0.603510 | 5_4:-18845411 | Msa0842000:CDS |
| AATCCAAGAGCTGAACCGAA+AGG | 0.649030 | 5_4:-18844281 | Msa0842000:intron |
| ATTTGCAAGGAAGACCAACA+AGG | 0.655433 | 5_4:-18845398 | Msa0842000:CDS |
| TTTGCAAGGAAGACCAACAA+GGG | 0.670312 | 5_4:-18845397 | Msa0842000:CDS |
| TTTCCATACGGTGTTCATGG+AGG | 0.673202 | 5_4:-18843779 | Msa0842000:CDS |
| AATGTCGTAGGTGTATGGCA+CGG | 0.795308 | 5_4:-18843846 | Msa0842000:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATGAATAAACAAAAAAA+TGG | + | chr5_4:18843824-18843843 | None:intergenic | 15.0% |
| !! | TTATTCATGAATTTATTGAA+TGG | - | chr5_4:18843833-18843852 | Msa0842000:CDS | 15.0% |
| !! | AATTGATATATTTAATGCAT+GGG | + | chr5_4:18844070-18844089 | None:intergenic | 15.0% |
| !!! | TTTTAATTTCTTTAACTACA+GGG | - | chr5_4:18844929-18844948 | Msa0842000:intron | 15.0% |
| !! | TTCATGAATAAACAAAAAAA+TGG | + | chr5_4:18843824-18843843 | None:intergenic | 15.0% |
| !! | TTATTCATGAATTTATTGAA+TGG | - | chr5_4:18843833-18843852 | Msa0842000:CDS | 15.0% |
| !! | AATTGATATATTTAATGCAT+GGG | + | chr5_4:18844070-18844089 | None:intergenic | 15.0% |
| !!! | TTTTAATTTCTTTAACTACA+GGG | - | chr5_4:18844929-18844948 | Msa0842000:intron | 15.0% |
| !! | ATTGATATATTTAATGCATG+GGG | + | chr5_4:18844069-18844088 | None:intergenic | 20.0% |
| !! | CAATTGATATATTTAATGCA+TGG | + | chr5_4:18844071-18844090 | None:intergenic | 20.0% |
| !! | TCTCAAATTATTATCTGTAT+TGG | + | chr5_4:18844206-18844225 | None:intergenic | 20.0% |
| !! | AAAAGGAAACAAAATGTTAT+TGG | + | chr5_4:18844419-18844438 | None:intergenic | 20.0% |
| !! | ATCAAGTAAAATAATGTCAA+TGG | + | chr5_4:18844448-18844467 | None:intergenic | 20.0% |
| !!! | GTTTTAATTTCTTTAACTAC+AGG | - | chr5_4:18844928-18844947 | Msa0842000:intron | 20.0% |
| !! | ATTGATATATTTAATGCATG+GGG | + | chr5_4:18844069-18844088 | None:intergenic | 20.0% |
| !! | CAATTGATATATTTAATGCA+TGG | + | chr5_4:18844071-18844090 | None:intergenic | 20.0% |
| !! | TCTCAAATTATTATCTGTAT+TGG | + | chr5_4:18844206-18844225 | None:intergenic | 20.0% |
| !! | AAAAGGAAACAAAATGTTAT+TGG | + | chr5_4:18844419-18844438 | None:intergenic | 20.0% |
| !! | ATCAAGTAAAATAATGTCAA+TGG | + | chr5_4:18844448-18844467 | None:intergenic | 20.0% |
| !!! | GTTTTAATTTCTTTAACTAC+AGG | - | chr5_4:18844928-18844947 | Msa0842000:intron | 20.0% |
| !! | TAAATTATATGCCCATTTTG+GGG | + | chr5_4:18843948-18843967 | None:intergenic | 25.0% |
| !! | GTAAATTATATGCCCATTTT+GGG | + | chr5_4:18843949-18843968 | None:intergenic | 25.0% |
| !! | TGTAAATTATATGCCCATTT+TGG | + | chr5_4:18843950-18843969 | None:intergenic | 25.0% |
| !!! | TTCCTTAATTTCTAGTGTTT+AGG | + | chr5_4:18844112-18844131 | None:intergenic | 25.0% |
| ! | ACATAATTCAGTGTAATCAT+AGG | - | chr5_4:18844231-18844250 | Msa0842000:intron | 25.0% |
| ! | CATATTTCATATCTGATAGT+AGG | - | chr5_4:18844377-18844396 | Msa0842000:intron | 25.0% |
| ! | AATGTCAATGGTTAATGAAA+AGG | + | chr5_4:18844436-18844455 | None:intergenic | 25.0% |
| !!! | TACTTGATAACTGATAGTTT+TGG | - | chr5_4:18844460-18844479 | Msa0842000:CDS | 25.0% |
| ! | AATTATCTTGATCAAGTAAG+TGG | + | chr5_4:18844747-18844766 | None:intergenic | 25.0% |
| !!! | TGATTCAACTTGTTAATTTC+TGG | + | chr5_4:18844786-18844805 | None:intergenic | 25.0% |
| ! | AAGTTACATAAAATAGCAGT+TGG | - | chr5_4:18845112-18845131 | Msa0842000:intron | 25.0% |
| !! | TAAATTATATGCCCATTTTG+GGG | + | chr5_4:18843948-18843967 | None:intergenic | 25.0% |
| !! | GTAAATTATATGCCCATTTT+GGG | + | chr5_4:18843949-18843968 | None:intergenic | 25.0% |
| !! | TGTAAATTATATGCCCATTT+TGG | + | chr5_4:18843950-18843969 | None:intergenic | 25.0% |
| !!! | TTCCTTAATTTCTAGTGTTT+AGG | + | chr5_4:18844112-18844131 | None:intergenic | 25.0% |
| ! | ACATAATTCAGTGTAATCAT+AGG | - | chr5_4:18844231-18844250 | Msa0842000:intron | 25.0% |
| ! | CATATTTCATATCTGATAGT+AGG | - | chr5_4:18844377-18844396 | Msa0842000:intron | 25.0% |
| ! | AATGTCAATGGTTAATGAAA+AGG | + | chr5_4:18844436-18844455 | None:intergenic | 25.0% |
| !!! | TACTTGATAACTGATAGTTT+TGG | - | chr5_4:18844460-18844479 | Msa0842000:CDS | 25.0% |
| ! | AATTATCTTGATCAAGTAAG+TGG | + | chr5_4:18844747-18844766 | None:intergenic | 25.0% |
| !!! | TGATTCAACTTGTTAATTTC+TGG | + | chr5_4:18844786-18844805 | None:intergenic | 25.0% |
| ! | AAGTTACATAAAATAGCAGT+TGG | - | chr5_4:18845112-18845131 | Msa0842000:intron | 25.0% |
| TGAGAGATATAACATTTGCA+AGG | - | chr5_4:18843706-18843725 | Msa0842000:CDS | 30.0% | |
| GTGATGTAACTAGATATCTT+TGG | - | chr5_4:18843975-18843994 | Msa0842000:intron | 30.0% | |
| !! | AGTTTTGACAGTTGAAAGAT+GGG | + | chr5_4:18844001-18844020 | None:intergenic | 30.0% |
| !! | AAGTTTTGACAGTTGAAAGA+TGG | + | chr5_4:18844002-18844021 | None:intergenic | 30.0% |
| TGCCTAAACACTAGAAATTA+AGG | - | chr5_4:18844107-18844126 | Msa0842000:CDS | 30.0% | |
| GACATAATAGTTATGAAGCA+CGG | - | chr5_4:18844139-18844158 | Msa0842000:CDS | 30.0% | |
| GTTATTGGATGATATTCAAC+TGG | + | chr5_4:18844404-18844423 | None:intergenic | 30.0% | |
| !!! | ATAACTGATAGTTTTGGCAA+AGG | - | chr5_4:18844466-18844485 | Msa0842000:CDS | 30.0% |
| !!! | TAACTGATAGTTTTGGCAAA+GGG | - | chr5_4:18844467-18844486 | Msa0842000:CDS | 30.0% |
| AAAGTCTACAAGAAAACCAT+AGG | - | chr5_4:18844517-18844536 | Msa0842000:intron | 30.0% | |
| ATGCTGAATGAATTAGTTGA+AGG | + | chr5_4:18844548-18844567 | None:intergenic | 30.0% | |
| AATGTTAGTGCTCTTATACA+TGG | + | chr5_4:18844599-18844618 | None:intergenic | 30.0% | |
| !!! | CACTAACATTTTGAGTTCAT+AGG | - | chr5_4:18844609-18844628 | Msa0842000:CDS | 30.0% |
| AAACACACAACTACACAAAA+AGG | - | chr5_4:18845012-18845031 | Msa0842000:intron | 30.0% | |
| GCATTTGTTCAATTTCCATA+CGG | - | chr5_4:18845326-18845345 | Msa0842000:intron | 30.0% | |
| TGAGAGATATAACATTTGCA+AGG | - | chr5_4:18843706-18843725 | Msa0842000:CDS | 30.0% | |
| GTGATGTAACTAGATATCTT+TGG | - | chr5_4:18843975-18843994 | Msa0842000:intron | 30.0% | |
| !! | AGTTTTGACAGTTGAAAGAT+GGG | + | chr5_4:18844001-18844020 | None:intergenic | 30.0% |
| !! | AAGTTTTGACAGTTGAAAGA+TGG | + | chr5_4:18844002-18844021 | None:intergenic | 30.0% |
| TGCCTAAACACTAGAAATTA+AGG | - | chr5_4:18844107-18844126 | Msa0842000:CDS | 30.0% | |
| GACATAATAGTTATGAAGCA+CGG | - | chr5_4:18844139-18844158 | Msa0842000:CDS | 30.0% | |
| GTTATTGGATGATATTCAAC+TGG | + | chr5_4:18844404-18844423 | None:intergenic | 30.0% | |
| !!! | ATAACTGATAGTTTTGGCAA+AGG | - | chr5_4:18844466-18844485 | Msa0842000:CDS | 30.0% |
| !!! | TAACTGATAGTTTTGGCAAA+GGG | - | chr5_4:18844467-18844486 | Msa0842000:CDS | 30.0% |
| AAAGTCTACAAGAAAACCAT+AGG | - | chr5_4:18844517-18844536 | Msa0842000:intron | 30.0% | |
| ATGCTGAATGAATTAGTTGA+AGG | + | chr5_4:18844548-18844567 | None:intergenic | 30.0% | |
| AATGTTAGTGCTCTTATACA+TGG | + | chr5_4:18844599-18844618 | None:intergenic | 30.0% | |
| !!! | CACTAACATTTTGAGTTCAT+AGG | - | chr5_4:18844609-18844628 | Msa0842000:CDS | 30.0% |
| AAACACACAACTACACAAAA+AGG | - | chr5_4:18845012-18845031 | Msa0842000:intron | 30.0% | |
| GCATTTGTTCAATTTCCATA+CGG | - | chr5_4:18845326-18845345 | Msa0842000:intron | 30.0% | |
| ! | AAATCCAGAATCTGAAGTCA+AGG | - | chr5_4:18843745-18843764 | Msa0842000:CDS | 35.0% |
| TACTAATCTTCTCCCCAAAA+TGG | - | chr5_4:18843933-18843952 | Msa0842000:intron | 35.0% | |
| ACTAATCTTCTCCCCAAAAT+GGG | - | chr5_4:18843934-18843953 | Msa0842000:intron | 35.0% | |
| TGTTTAGGCAGTGCTTAATT+AGG | + | chr5_4:18844097-18844116 | None:intergenic | 35.0% | |
| ! | TATTATCTGTATTGGCGTGT+CGG | + | chr5_4:18844198-18844217 | None:intergenic | 35.0% |
| ! | TGTAATCATAGGTGTTGTGT+CGG | - | chr5_4:18844242-18844261 | Msa0842000:intron | 35.0% |
| AGCTATTATGCTATGAAGCA+CGG | + | chr5_4:18844321-18844340 | None:intergenic | 35.0% | |
| ! | AAAGGGAGGCAGAAATTTTA+AGG | - | chr5_4:18844484-18844503 | Msa0842000:CDS | 35.0% |
| TTAGTTGAAGGTTGTACCTA+TGG | + | chr5_4:18844536-18844555 | None:intergenic | 35.0% | |
| TTGAGTTCATAGGCAATTGA+TGG | - | chr5_4:18844619-18844638 | Msa0842000:CDS | 35.0% | |
| TGAGTTCATAGGCAATTGAT+GGG | - | chr5_4:18844620-18844639 | Msa0842000:CDS | 35.0% | |
| ! | TAAGTTCCAGTTGATTCTCT+AGG | + | chr5_4:18844685-18844704 | None:intergenic | 35.0% |
| ! | CAAGTTGAATCAAATTCTGC+AGG | - | chr5_4:18844794-18844813 | Msa0842000:intron | 35.0% |
| TTCGAGAGAAATGTTAGTGA+AGG | + | chr5_4:18844881-18844900 | None:intergenic | 35.0% | |
| CATAATCCATCAGGAAAATG+TGG | - | chr5_4:18844955-18844974 | Msa0842000:intron | 35.0% | |
| AAATGTGGAGCTCTATAAGA+AGG | - | chr5_4:18844970-18844989 | Msa0842000:intron | 35.0% | |
| ! | GTTGTGTGTTTTCTTGTTGA+AGG | + | chr5_4:18845003-18845022 | None:intergenic | 35.0% |
| CATCACATTCACTTAAGCTT+AGG | - | chr5_4:18845228-18845247 | Msa0842000:intron | 35.0% | |
| TGTGACAATTGAAATGTCGT+AGG | - | chr5_4:18845259-18845278 | Msa0842000:intron | 35.0% | |
| ATTGAAATGTCGTAGGTGTA+TGG | - | chr5_4:18845266-18845285 | Msa0842000:intron | 35.0% | |
| ! | AAATCCAGAATCTGAAGTCA+AGG | - | chr5_4:18843745-18843764 | Msa0842000:CDS | 35.0% |
| TACTAATCTTCTCCCCAAAA+TGG | - | chr5_4:18843933-18843952 | Msa0842000:intron | 35.0% | |
| ACTAATCTTCTCCCCAAAAT+GGG | - | chr5_4:18843934-18843953 | Msa0842000:intron | 35.0% | |
| TGTTTAGGCAGTGCTTAATT+AGG | + | chr5_4:18844097-18844116 | None:intergenic | 35.0% | |
| ! | TATTATCTGTATTGGCGTGT+CGG | + | chr5_4:18844198-18844217 | None:intergenic | 35.0% |
| ! | TGTAATCATAGGTGTTGTGT+CGG | - | chr5_4:18844242-18844261 | Msa0842000:intron | 35.0% |
| AGCTATTATGCTATGAAGCA+CGG | + | chr5_4:18844321-18844340 | None:intergenic | 35.0% | |
| ! | AAAGGGAGGCAGAAATTTTA+AGG | - | chr5_4:18844484-18844503 | Msa0842000:CDS | 35.0% |
| TTAGTTGAAGGTTGTACCTA+TGG | + | chr5_4:18844536-18844555 | None:intergenic | 35.0% | |
| TTGAGTTCATAGGCAATTGA+TGG | - | chr5_4:18844619-18844638 | Msa0842000:CDS | 35.0% | |
| TGAGTTCATAGGCAATTGAT+GGG | - | chr5_4:18844620-18844639 | Msa0842000:CDS | 35.0% | |
| ! | TAAGTTCCAGTTGATTCTCT+AGG | + | chr5_4:18844685-18844704 | None:intergenic | 35.0% |
| ! | CAAGTTGAATCAAATTCTGC+AGG | - | chr5_4:18844794-18844813 | Msa0842000:intron | 35.0% |
| TTCGAGAGAAATGTTAGTGA+AGG | + | chr5_4:18844881-18844900 | None:intergenic | 35.0% | |
| CATAATCCATCAGGAAAATG+TGG | - | chr5_4:18844955-18844974 | Msa0842000:intron | 35.0% | |
| AAATGTGGAGCTCTATAAGA+AGG | - | chr5_4:18844970-18844989 | Msa0842000:intron | 35.0% | |
| ! | GTTGTGTGTTTTCTTGTTGA+AGG | + | chr5_4:18845003-18845022 | None:intergenic | 35.0% |
| CATCACATTCACTTAAGCTT+AGG | - | chr5_4:18845228-18845247 | Msa0842000:intron | 35.0% | |
| TGTGACAATTGAAATGTCGT+AGG | - | chr5_4:18845259-18845278 | Msa0842000:intron | 35.0% | |
| ATTGAAATGTCGTAGGTGTA+TGG | - | chr5_4:18845266-18845285 | Msa0842000:intron | 35.0% | |
| ATTTGCAAGGAAGACCAACA+AGG | - | chr5_4:18843719-18843738 | Msa0842000:CDS | 40.0% | |
| TTTGCAAGGAAGACCAACAA+GGG | - | chr5_4:18843720-18843739 | Msa0842000:CDS | 40.0% | |
| ATTCTGGATTTGTCCCTTGT+TGG | + | chr5_4:18843736-18843755 | None:intergenic | 40.0% | |
| CATACCTTGACTTCAGATTC+TGG | + | chr5_4:18843752-18843771 | None:intergenic | 40.0% | |
| ! | CAGAATCTGAAGTCAAGGTA+TGG | - | chr5_4:18843750-18843769 | Msa0842000:CDS | 40.0% |
| ACTGTCAAAACTTCCAAGAG+TGG | - | chr5_4:18844009-18844028 | Msa0842000:intron | 40.0% | |
| TTGATGGGAGAACAGCTTTA+TGG | - | chr5_4:18844635-18844654 | Msa0842000:CDS | 40.0% | |
| ! | GTTGATTCTCTAGGTCTTGT+AGG | + | chr5_4:18844676-18844695 | None:intergenic | 40.0% |
| ACAAGACCTAGAGAATCAAC+TGG | - | chr5_4:18844676-18844695 | Msa0842000:intron | 40.0% | |
| TGCTGCTAAGAGTTACCTTT+CGG | + | chr5_4:18844854-18844873 | None:intergenic | 40.0% | |
| ACAGGGAAACATAATCCATC+AGG | - | chr5_4:18844946-18844965 | Msa0842000:intron | 40.0% | |
| ! | GTGTGTTTTCTTGTTGAAGG+AGG | + | chr5_4:18845000-18845019 | None:intergenic | 40.0% |
| CGCATCTTACTTAATCTGCA+CGG | - | chr5_4:18845040-18845059 | Msa0842000:intron | 40.0% | |
| ! | TGCGAGTCTCTTGTGATTTT+GGG | + | chr5_4:18845070-18845089 | None:intergenic | 40.0% |
| CAATTTCCATACGGTGTTCA+TGG | - | chr5_4:18845335-18845354 | Msa0842000:intron | 40.0% | |
| GTCTCACAATATTCTTGCTC+AGG | + | chr5_4:18845404-18845423 | None:intergenic | 40.0% | |
| CAAGAATATTGTGAGACCTC+AGG | - | chr5_4:18845407-18845426 | Msa0842000:CDS | 40.0% | |
| ATTTGCAAGGAAGACCAACA+AGG | - | chr5_4:18843719-18843738 | Msa0842000:CDS | 40.0% | |
| TTTGCAAGGAAGACCAACAA+GGG | - | chr5_4:18843720-18843739 | Msa0842000:CDS | 40.0% | |
| ATTCTGGATTTGTCCCTTGT+TGG | + | chr5_4:18843736-18843755 | None:intergenic | 40.0% | |
| CATACCTTGACTTCAGATTC+TGG | + | chr5_4:18843752-18843771 | None:intergenic | 40.0% | |
| ! | CAGAATCTGAAGTCAAGGTA+TGG | - | chr5_4:18843750-18843769 | Msa0842000:CDS | 40.0% |
| ACTGTCAAAACTTCCAAGAG+TGG | - | chr5_4:18844009-18844028 | Msa0842000:intron | 40.0% | |
| TTGATGGGAGAACAGCTTTA+TGG | - | chr5_4:18844635-18844654 | Msa0842000:CDS | 40.0% | |
| ! | GTTGATTCTCTAGGTCTTGT+AGG | + | chr5_4:18844676-18844695 | None:intergenic | 40.0% |
| ACAAGACCTAGAGAATCAAC+TGG | - | chr5_4:18844676-18844695 | Msa0842000:intron | 40.0% | |
| TGCTGCTAAGAGTTACCTTT+CGG | + | chr5_4:18844854-18844873 | None:intergenic | 40.0% | |
| ACAGGGAAACATAATCCATC+AGG | - | chr5_4:18844946-18844965 | Msa0842000:intron | 40.0% | |
| ! | GTGTGTTTTCTTGTTGAAGG+AGG | + | chr5_4:18845000-18845019 | None:intergenic | 40.0% |
| CGCATCTTACTTAATCTGCA+CGG | - | chr5_4:18845040-18845059 | Msa0842000:intron | 40.0% | |
| ! | TGCGAGTCTCTTGTGATTTT+GGG | + | chr5_4:18845070-18845089 | None:intergenic | 40.0% |
| CAATTTCCATACGGTGTTCA+TGG | - | chr5_4:18845335-18845354 | Msa0842000:intron | 40.0% | |
| GTCTCACAATATTCTTGCTC+AGG | + | chr5_4:18845404-18845423 | None:intergenic | 40.0% | |
| CAAGAATATTGTGAGACCTC+AGG | - | chr5_4:18845407-18845426 | Msa0842000:CDS | 40.0% | |
| GAGTACAATCATGCCACTCT+TGG | + | chr5_4:18844025-18844044 | None:intergenic | 45.0% | |
| !!! | CTGATAGTTTTGGCAAAGGG+AGG | - | chr5_4:18844470-18844489 | Msa0842000:CDS | 45.0% |
| ! | TTTTCATGCGAACTCCTTGG+AGG | + | chr5_4:18844709-18844728 | None:intergenic | 45.0% |
| !! | CCTTTTTCATGCGAACTCCT+TGG | + | chr5_4:18844712-18844731 | None:intergenic | 45.0% |
| CCAAGGAGTTCGCATGAAAA+AGG | - | chr5_4:18844709-18844728 | Msa0842000:intron | 45.0% | |
| AATCCAAGAGCTGAACCGAA+AGG | - | chr5_4:18844836-18844855 | Msa0842000:intron | 45.0% | |
| TTACCTTTCGGTTCAGCTCT+TGG | + | chr5_4:18844842-18844861 | None:intergenic | 45.0% | |
| ! | AGAGCTCCACATTTTCCTGA+TGG | + | chr5_4:18844964-18844983 | None:intergenic | 45.0% |
| ! | GCGAGTCTCTTGTGATTTTG+GGG | + | chr5_4:18845069-18845088 | None:intergenic | 45.0% |
| ! | GTGCGAGTCTCTTGTGATTT+TGG | + | chr5_4:18845071-18845090 | None:intergenic | 45.0% |
| ATAGCAGTGCTACATCACAG+CGG | + | chr5_4:18845196-18845215 | None:intergenic | 45.0% | |
| AATGTCGTAGGTGTATGGCA+CGG | - | chr5_4:18845271-18845290 | Msa0842000:intron | 45.0% | |
| TTTCCATACGGTGTTCATGG+AGG | - | chr5_4:18845338-18845357 | Msa0842000:intron | 45.0% | |
| CACAATATTCTTGCTCAGGC+TGG | + | chr5_4:18845400-18845419 | None:intergenic | 45.0% | |
| GAGTACAATCATGCCACTCT+TGG | + | chr5_4:18844025-18844044 | None:intergenic | 45.0% | |
| !!! | CTGATAGTTTTGGCAAAGGG+AGG | - | chr5_4:18844470-18844489 | Msa0842000:CDS | 45.0% |
| ! | TTTTCATGCGAACTCCTTGG+AGG | + | chr5_4:18844709-18844728 | None:intergenic | 45.0% |
| !! | CCTTTTTCATGCGAACTCCT+TGG | + | chr5_4:18844712-18844731 | None:intergenic | 45.0% |
| CCAAGGAGTTCGCATGAAAA+AGG | - | chr5_4:18844709-18844728 | Msa0842000:intron | 45.0% | |
| AATCCAAGAGCTGAACCGAA+AGG | - | chr5_4:18844836-18844855 | Msa0842000:intron | 45.0% | |
| TTACCTTTCGGTTCAGCTCT+TGG | + | chr5_4:18844842-18844861 | None:intergenic | 45.0% | |
| ! | AGAGCTCCACATTTTCCTGA+TGG | + | chr5_4:18844964-18844983 | None:intergenic | 45.0% |
| ! | GCGAGTCTCTTGTGATTTTG+GGG | + | chr5_4:18845069-18845088 | None:intergenic | 45.0% |
| ! | GTGCGAGTCTCTTGTGATTT+TGG | + | chr5_4:18845071-18845090 | None:intergenic | 45.0% |
| ATAGCAGTGCTACATCACAG+CGG | + | chr5_4:18845196-18845215 | None:intergenic | 45.0% | |
| AATGTCGTAGGTGTATGGCA+CGG | - | chr5_4:18845271-18845290 | Msa0842000:intron | 45.0% | |
| TTTCCATACGGTGTTCATGG+AGG | - | chr5_4:18845338-18845357 | Msa0842000:intron | 45.0% | |
| CACAATATTCTTGCTCAGGC+TGG | + | chr5_4:18845400-18845419 | None:intergenic | 45.0% | |
| ATGAAGCACGGACACAGACA+CGG | - | chr5_4:18844151-18844170 | Msa0842000:CDS | 50.0% | |
| ! | GTCGGTGTCTATATCGTGTC+TGG | + | chr5_4:18844180-18844199 | None:intergenic | 50.0% |
| ! | CATAGGTGTTGTGTCGGTGT+TGG | - | chr5_4:18844248-18844267 | Msa0842000:intron | 50.0% |
| TATGAAGCACGGACACCCTT+CGG | + | chr5_4:18844310-18844329 | None:intergenic | 50.0% | |
| CAACTGGAACTTAGCCTCCA+AGG | - | chr5_4:18844692-18844711 | Msa0842000:intron | 50.0% | |
| TGCGACTCACAACACTGATG+TGG | + | chr5_4:18845093-18845112 | None:intergenic | 50.0% | |
| CGTGTATCGCGAAACAGTAG+TGG | - | chr5_4:18845158-18845177 | Msa0842000:intron | 50.0% | |
| ATGAAGCACGGACACAGACA+CGG | - | chr5_4:18844151-18844170 | Msa0842000:CDS | 50.0% | |
| ! | GTCGGTGTCTATATCGTGTC+TGG | + | chr5_4:18844180-18844199 | None:intergenic | 50.0% |
| ! | CATAGGTGTTGTGTCGGTGT+TGG | - | chr5_4:18844248-18844267 | Msa0842000:intron | 50.0% |
| TATGAAGCACGGACACCCTT+CGG | + | chr5_4:18844310-18844329 | None:intergenic | 50.0% | |
| CAACTGGAACTTAGCCTCCA+AGG | - | chr5_4:18844692-18844711 | Msa0842000:intron | 50.0% | |
| TGCGACTCACAACACTGATG+TGG | + | chr5_4:18845093-18845112 | None:intergenic | 50.0% | |
| CGTGTATCGCGAAACAGTAG+TGG | - | chr5_4:18845158-18845177 | Msa0842000:intron | 50.0% | |
| ! | GATTAGGCGTGTCTCGGTGT+CGG | + | chr5_4:18844288-18844307 | None:intergenic | 55.0% |
| ! | CCTTCGGATTAGGCGTGTCT+CGG | + | chr5_4:18844294-18844313 | None:intergenic | 55.0% |
| CGAGACACGCCTAATCCGAA+GGG | - | chr5_4:18844292-18844311 | Msa0842000:CDS | 55.0% | |
| CCTCCTCCATGAACACCGTA+TGG | + | chr5_4:18845344-18845363 | None:intergenic | 55.0% | |
| CCATACGGTGTTCATGGAGG+AGG | - | chr5_4:18845341-18845360 | Msa0842000:intron | 55.0% | |
| TGTTGCACTTGCACTGCCTG+AGG | + | chr5_4:18845426-18845445 | None:intergenic | 55.0% | |
| ! | GATTAGGCGTGTCTCGGTGT+CGG | + | chr5_4:18844288-18844307 | None:intergenic | 55.0% |
| ! | CCTTCGGATTAGGCGTGTCT+CGG | + | chr5_4:18844294-18844313 | None:intergenic | 55.0% |
| CGAGACACGCCTAATCCGAA+GGG | - | chr5_4:18844292-18844311 | Msa0842000:CDS | 55.0% | |
| CCTCCTCCATGAACACCGTA+TGG | + | chr5_4:18845344-18845363 | None:intergenic | 55.0% | |
| CCATACGGTGTTCATGGAGG+AGG | - | chr5_4:18845341-18845360 | Msa0842000:intron | 55.0% | |
| TGTTGCACTTGCACTGCCTG+AGG | + | chr5_4:18845426-18845445 | None:intergenic | 55.0% | |
| !! | TCTCGGTGTCGGATACGCGT+CGG | + | chr5_4:18844277-18844296 | None:intergenic | 60.0% |
| CCGAGACACGCCTAATCCGA+AGG | - | chr5_4:18844291-18844310 | Msa0842000:CDS | 60.0% | |
| GCACGGACACCCTTCGGATT+AGG | + | chr5_4:18844304-18844323 | None:intergenic | 60.0% | |
| !! | TCTCGGTGTCGGATACGCGT+CGG | + | chr5_4:18844277-18844296 | None:intergenic | 60.0% |
| CCGAGACACGCCTAATCCGA+AGG | - | chr5_4:18844291-18844310 | Msa0842000:CDS | 60.0% | |
| GCACGGACACCCTTCGGATT+AGG | + | chr5_4:18844304-18844323 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 18843691 | 18845448 | 18843691 | ID=Msa0842000;Name=Msa0842000 |
| chr5_4 | mRNA | 18843691 | 18845448 | 18843691 | ID=Msa0842000-mRNA-1;Parent=Msa0842000;Name=Msa0842000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1|0|0|1|1|0.83|6|0|177 |
| chr5_4 | exon | 18845373 | 18845448 | 18845373 | ID=Msa0842000-mRNA-1:exon:7830;Parent=Msa0842000-mRNA-1 |
| chr5_4 | exon | 18844601 | 18844662 | 18844601 | ID=Msa0842000-mRNA-1:exon:7829;Parent=Msa0842000-mRNA-1 |
| chr5_4 | exon | 18844409 | 18844508 | 18844409 | ID=Msa0842000-mRNA-1:exon:7828;Parent=Msa0842000-mRNA-1 |
| chr5_4 | exon | 18844282 | 18844323 | 18844282 | ID=Msa0842000-mRNA-1:exon:7827;Parent=Msa0842000-mRNA-1 |
| chr5_4 | exon | 18844106 | 18844189 | 18844106 | ID=Msa0842000-mRNA-1:exon:7826;Parent=Msa0842000-mRNA-1 |
| chr5_4 | exon | 18843691 | 18843858 | 18843691 | ID=Msa0842000-mRNA-1:exon:7825;Parent=Msa0842000-mRNA-1 |
| chr5_4 | five_prime_UTR | 18845448 | 18845448 | 18845448 | ID=Msa0842000-mRNA-1:five_prime_utr;Parent=Msa0842000-mRNA-1 |
| chr5_4 | CDS | 18845373 | 18845447 | 18845373 | ID=Msa0842000-mRNA-1:cds;Parent=Msa0842000-mRNA-1 |
| chr5_4 | CDS | 18844601 | 18844662 | 18844601 | ID=Msa0842000-mRNA-1:cds;Parent=Msa0842000-mRNA-1 |
| chr5_4 | CDS | 18844409 | 18844508 | 18844409 | ID=Msa0842000-mRNA-1:cds;Parent=Msa0842000-mRNA-1 |
| chr5_4 | CDS | 18844282 | 18844323 | 18844282 | ID=Msa0842000-mRNA-1:cds;Parent=Msa0842000-mRNA-1 |
| chr5_4 | CDS | 18844106 | 18844189 | 18844106 | ID=Msa0842000-mRNA-1:cds;Parent=Msa0842000-mRNA-1 |
| chr5_4 | CDS | 18843691 | 18843858 | 18843691 | ID=Msa0842000-mRNA-1:cds;Parent=Msa0842000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
