AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0803940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803940 MtrunA17_Chr5g0411691 96.653 239 7 1 1 238 1 239 5.15e-171 470
Msa0803940 MtrunA17_Chr2g0279821 64.103 234 77 3 1 232 1 229 7.37e-103 298
Msa0803940 MtrunA17_Chr4g0049541 57.080 226 93 4 1 225 1 223 5.07e-80 239
Msa0803940 MtrunA17_Chr5g0427961 53.107 177 63 4 60 234 4 162 7.75e-54 171
Msa0803940 MtrunA17_Chr2g0284911 46.784 171 89 1 1 169 16 186 7.47e-47 156
Msa0803940 MtrunA17_Chr3g0077501 46.512 172 90 1 1 170 1 172 1.31e-46 154
Msa0803940 MtrunA17_Chr8g0380021 45.614 171 91 2 1 169 17 187 1.08e-45 152
Msa0803940 MtrunA17_Chr3g0097101 39.726 219 124 3 1 213 16 232 9.98e-44 147
Msa0803940 MtrunA17_Chr4g0061691 44.242 165 89 2 1 162 1 165 7.11e-43 145
Msa0803940 MtrunA17_Chr8g0351051 45.283 159 79 2 1 154 1 156 3.50e-41 141
Msa0803940 MtrunA17_Chr5g0412461 42.929 198 101 6 1 194 1 190 1.69e-40 139
Msa0803940 MtrunA17_Chr8g0366231 43.030 165 91 2 1 162 1 165 7.15e-40 137
Msa0803940 MtrunA17_Chr7g0220111 36.889 225 127 4 1 223 1 212 2.00e-39 136
Msa0803940 MtrunA17_Chr6g0455511 36.000 225 130 4 1 223 1 213 5.27e-39 135
Msa0803940 MtrunA17_Chr5g0427401 40.594 202 110 2 1 197 1 197 6.72e-39 134
Msa0803940 MtrunA17_Chr5g0412271 45.665 173 88 5 1 169 1 171 9.13e-39 134
Msa0803940 MtrunA17_Chr4g0061671 38.122 181 109 3 1 179 1 180 3.09e-38 131
Msa0803940 MtrunA17_Chr7g0220121 41.420 169 96 3 1 167 1 168 5.10e-38 133
Msa0803940 MtrunA17_Chr5g0420081 41.860 172 97 2 1 169 1 172 5.98e-38 132
Msa0803940 MtrunA17_Chr8g0351031 36.866 217 119 4 1 203 1 213 8.33e-38 131
Msa0803940 MtrunA17_Chr8g0351041 42.771 166 84 2 1 159 1 162 9.04e-38 129
Msa0803940 MtrunA17_Chr3g0122251 40.323 186 105 2 1 180 1 186 1.22e-37 132
Msa0803940 MtrunA17_Chr1g0204111 42.442 172 96 1 1 169 17 188 2.08e-37 131
Msa0803940 MtrunA17_Chr4g0020221 46.104 154 79 1 1 150 1 154 2.76e-37 131
Msa0803940 MtrunA17_Chr5g0420091 41.818 165 93 2 1 162 1 165 3.14e-37 130
Msa0803940 MtrunA17_Chr7g0246431 43.195 169 94 1 1 167 1 169 3.13e-36 127
Msa0803940 MtrunA17_Chr4g0057151 41.808 177 101 2 1 175 1 177 8.44e-36 125
Msa0803940 MtrunA17_Chr6g0474371 41.808 177 91 3 1 169 1 173 4.30e-35 124
Msa0803940 MtrunA17_Chr4g0049901 44.379 169 90 1 1 165 27 195 6.35e-35 124
Msa0803940 MtrunA17_Chr1g0164791 40.805 174 92 4 1 165 1 172 1.50e-34 123
Msa0803940 MtrunA17_Chr4g0018421 38.835 206 118 3 1 202 1 202 2.05e-34 122
Msa0803940 MtrunA17_Chr3g0142191 31.250 256 121 8 1 237 1 220 4.78e-31 114
Msa0803940 MtrunA17_Chr3g0125241 38.378 185 93 5 1 179 26 195 1.01e-30 112
Msa0803940 MtrunA17_Chr1g0159661 38.690 168 80 4 1 152 1 161 5.16e-27 102
Msa0803940 MtrunA17_Chr5g0427921 81.667 60 11 0 1 60 1 60 6.24e-27 98.6
Msa0803940 MtrunA17_Chr1g0173161 64.516 62 22 0 1 62 1 62 5.21e-24 91.7
Msa0803940 MtrunA17_Chr5g0404951 31.982 222 122 7 1 207 1 208 1.55e-23 94.7
Msa0803940 MtrunA17_Chr2g0308251 53.623 69 32 0 1 69 1 69 8.80e-22 85.9
Msa0803940 MtrunA17_Chr7g0246381 60.656 61 24 0 1 61 1 61 1.13e-20 82.8
Msa0803940 MtrunA17_Chr8g0377561 62.069 58 22 0 1 58 1 58 2.06e-20 82.8
Msa0803940 MtrunA17_Chr3g0134451 55.714 70 30 1 1 69 1 70 1.11e-19 85.9
Msa0803940 MtrunA17_Chr8g0357771 50.725 69 34 0 1 69 1 69 1.14e-17 77.8
Msa0803940 MtrunA17_Chr1g0166611 45.055 91 43 1 13 103 17 100 1.53e-17 76.3
Msa0803940 MtrunA17_Chr1g0208561 48.529 68 35 0 2 69 9 76 1.78e-17 78.6
Msa0803940 MtrunA17_Chr3g0089141 48.529 68 35 0 2 69 9 76 2.08e-17 78.2
Msa0803940 MtrunA17_Chr2g0325971 48.529 68 35 0 2 69 9 76 2.30e-17 78.2
Msa0803940 MtrunA17_Chr4g0052061 49.275 69 35 0 1 69 1 69 6.32e-17 75.5
Msa0803940 MtrunA17_Chr5g0425191 58.621 58 24 0 1 58 1 58 1.27e-16 73.2
Msa0803940 MtrunA17_Chr3g0099421 50.000 68 34 0 2 69 34 101 1.71e-16 76.3
Msa0803940 MtrunA17_Chr4g0044071 55.172 58 26 0 1 58 1 58 2.65e-16 72.4
Msa0803940 MtrunA17_Chr1g0208581 47.059 68 36 0 2 69 9 76 3.30e-16 75.1
Msa0803940 MtrunA17_Chr2g0292791 50.000 68 34 0 2 69 9 76 3.72e-16 75.1
Msa0803940 MtrunA17_Chr1g0169761 39.167 120 65 3 1 112 1 120 6.05e-16 73.2
Msa0803940 MtrunA17_Chr5g0419601 47.826 69 36 0 1 69 8 76 6.05e-16 74.3
Msa0803940 MtrunA17_Chr8g0376821 47.826 69 36 0 1 69 1 69 6.30e-16 73.2
Msa0803940 MtrunA17_Chr3g0099411 48.529 68 35 0 2 69 9 76 6.72e-16 73.9
Msa0803940 MtrunA17_Chr1g0175601 36.937 111 68 1 1 109 1 111 8.94e-16 72.8
Msa0803940 MtrunA17_Chr1g0206721 48.529 68 35 0 2 69 9 76 9.73e-16 73.9
Msa0803940 MtrunA17_Chr1g0175611 47.826 69 36 0 1 69 1 69 1.00e-15 72.4
Msa0803940 MtrunA17_Chr5g0422421 48.529 68 35 0 2 69 9 76 1.36e-15 73.6
Msa0803940 MtrunA17_Chr1g0206701 48.529 68 35 0 2 69 9 76 1.50e-15 73.6
Msa0803940 MtrunA17_Chr8g0355091 48.529 68 35 0 2 69 9 76 1.53e-15 73.2
Msa0803940 MtrunA17_Chr1g0187361 45.588 68 37 0 2 69 9 76 2.23e-15 72.8
Msa0803940 MtrunA17_Chr1g0206991 48.529 68 35 0 2 69 9 76 2.25e-15 71.6
Msa0803940 MtrunA17_Chr2g0317451 47.059 68 36 0 2 69 9 76 2.67e-15 72.8
Msa0803940 MtrunA17_Chr4g0052081 44.928 69 38 0 1 69 1 69 2.74e-15 71.6
Msa0803940 MtrunA17_Chr1g0180591 46.377 69 37 0 1 69 1 69 2.89e-15 71.2
Msa0803940 MtrunA17_Chr2g0317481 47.059 68 36 0 2 69 9 76 2.93e-15 72.4
Msa0803940 MtrunA17_Chr1g0188671 44.118 68 38 0 2 69 47 114 2.94e-15 73.2
Msa0803940 MtrunA17_Chr8g0356071 46.377 69 37 0 1 69 1 69 4.11e-15 70.5
Msa0803940 MtrunA17_Chr3g0119901 44.928 69 38 0 1 69 8 76 4.54e-15 71.6
Msa0803940 MtrunA17_Chr1g0149391 47.059 68 36 0 2 69 9 76 1.13e-14 70.9
Msa0803940 MtrunA17_Chr3g0085241 43.478 69 39 0 1 69 40 108 1.26e-14 70.9
Msa0803940 MtrunA17_Chr4g0074101 44.928 69 38 0 1 69 1 69 1.67e-14 69.7
Msa0803940 MtrunA17_Chr5g0422941 45.588 68 37 0 2 69 9 76 1.75e-14 70.5
Msa0803940 MtrunA17_Chr8g0379021 42.647 68 39 0 2 69 12 79 1.92e-14 69.3
Msa0803940 MtrunA17_Chr4g0018951 49.091 55 28 0 15 69 25 79 4.30e-14 68.2
Msa0803940 MtrunA17_Chr4g0060841 43.662 71 38 1 1 69 1 71 4.93e-14 70.5
Msa0803940 MtrunA17_Chr2g0308271 34.746 118 74 2 54 169 27 143 6.94e-14 68.2
Msa0803940 MtrunA17_Chr2g0333981 42.029 69 40 0 1 69 11 79 6.97e-14 67.8
Msa0803940 MtrunA17_Chr2g0300441 44.286 70 37 1 2 69 7 76 1.89e-13 67.4
Msa0803940 MtrunA17_Chr2g0300421 44.118 68 38 0 2 69 9 76 9.62e-13 64.3
Msa0803940 MtrunA17_Chr3g0089151 41.176 68 40 0 2 69 9 76 1.23e-12 63.2
Msa0803940 MtrunA17_Chr5g0417661 50.943 53 26 0 1 53 56 108 4.66e-12 61.6
Msa0803940 MtrunA17_Chr1g0206691 45.763 59 32 0 11 69 1 59 7.57e-12 62.8
Msa0803940 MtrunA17_Chr3g0111841 45.000 60 33 0 7 66 1 60 7.82e-12 59.3
Msa0803940 MtrunA17_Chr4g0071601 43.478 69 39 0 1 69 11 79 4.00e-11 60.1
Msa0803940 MtrunA17_Chr1g0187351 42.373 59 34 0 11 69 1 59 6.75e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803940 AT4G37940.1 61.441 236 81 3 1 235 1 227 5.90e-98 285
Msa0803940 AT2G22630.1 58.723 235 88 3 1 234 1 227 8.34e-94 275
Msa0803940 AT2G22630.2 58.723 235 88 3 1 234 1 227 8.34e-94 275
Msa0803940 AT3G57230.1 58.298 235 92 5 1 234 1 230 3.67e-91 268
Msa0803940 AT3G57230.4 58.298 235 92 5 1 234 1 230 3.67e-91 268
Msa0803940 AT4G37940.4 57.627 236 76 3 1 235 1 213 1.28e-86 256
Msa0803940 AT2G14210.1 58.929 224 83 4 1 222 1 217 1.01e-76 231
Msa0803940 AT2G14210.2 58.929 224 83 4 1 222 1 217 2.17e-76 231
Msa0803940 AT4G37940.3 75.887 141 33 1 1 140 1 141 1.51e-74 224
Msa0803940 AT3G57230.2 70.213 141 41 1 1 140 1 141 2.20e-69 210
Msa0803940 AT4G37940.2 53.143 175 72 3 62 235 1 166 5.22e-55 174
Msa0803940 AT3G57230.5 50.761 197 85 7 43 234 7 196 5.41e-53 170
Msa0803940 AT3G57230.3 50.761 197 85 7 43 234 7 196 5.41e-53 170
Msa0803940 AT4G09960.6 43.137 204 113 2 1 201 2 205 1.27e-49 162
Msa0803940 AT4G09960.1 43.137 204 113 2 1 201 1 204 1.28e-49 162
Msa0803940 AT4G09960.5 43.137 204 113 2 1 201 11 214 1.48e-49 162
Msa0803940 AT4G09960.3 43.137 204 113 2 1 201 27 230 2.76e-49 162
Msa0803940 AT2G42830.2 39.407 236 116 6 1 225 16 235 8.43e-47 155
Msa0803940 AT2G42830.1 39.744 234 116 6 1 225 16 233 9.08e-47 155
Msa0803940 AT4G18960.1 47.059 170 88 1 2 169 18 187 9.84e-47 155
Msa0803940 AT4G09960.2 42.647 204 100 3 1 201 1 190 2.33e-46 154
Msa0803940 AT4G09960.4 43.333 210 108 4 1 201 96 303 2.41e-46 157
Msa0803940 AT3G58780.1 45.087 173 89 2 1 169 16 186 1.12e-44 150
Msa0803940 AT3G58780.5 45.087 173 89 2 1 169 22 192 1.15e-44 150
Msa0803940 AT2G22540.3 44.608 204 107 5 1 200 1 202 4.84e-44 148
Msa0803940 AT2G22540.1 44.608 204 107 5 1 200 1 202 4.84e-44 148
Msa0803940 AT1G26310.1 41.176 187 101 4 1 178 1 187 3.87e-42 144
Msa0803940 AT2G45650.1 45.806 155 83 1 1 154 1 155 4.44e-42 144
Msa0803940 AT3G61120.1 46.104 154 83 0 1 154 1 154 4.95e-42 143
Msa0803940 AT5G13790.1 45.665 173 89 1 1 173 1 168 6.88e-42 144
Msa0803940 AT1G69120.2 42.442 172 96 3 1 169 1 172 1.09e-41 142
Msa0803940 AT5G60910.1 34.177 237 142 4 1 223 1 237 1.36e-41 142
Msa0803940 AT5G13790.2 45.455 176 88 2 1 173 1 171 1.46e-41 143
Msa0803940 AT1G69120.1 42.442 172 96 3 1 169 1 172 2.71e-41 142
Msa0803940 AT3G58780.4 50.000 146 67 2 1 142 16 159 2.76e-41 142
Msa0803940 AT5G62165.3 36.715 207 126 3 1 203 1 206 1.01e-40 139
Msa0803940 AT5G62165.1 36.715 207 126 3 1 203 1 206 1.01e-40 139
Msa0803940 AT5G62165.2 36.715 207 126 3 1 203 1 206 1.01e-40 139
Msa0803940 AT2G45660.1 43.529 170 94 1 1 168 1 170 2.51e-40 138
Msa0803940 AT3G58780.2 42.775 173 86 3 1 169 16 179 6.96e-40 137
Msa0803940 AT2G22540.2 43.627 204 104 6 1 200 1 197 8.10e-40 137
Msa0803940 AT2G45660.2 44.872 156 84 1 1 154 1 156 2.03e-39 134
Msa0803940 AT5G51860.2 43.605 172 94 2 1 169 1 172 3.39e-39 135
Msa0803940 AT3G58780.3 39.394 198 89 3 1 169 16 211 9.00e-39 135
Msa0803940 AT5G51860.1 43.452 168 92 2 1 165 1 168 9.65e-39 134
Msa0803940 AT5G62165.10 37.864 206 111 5 1 203 1 192 2.17e-38 132
Msa0803940 AT5G62165.4 37.864 206 111 5 1 203 1 192 2.17e-38 132
Msa0803940 AT5G62165.17 41.667 156 89 1 1 154 1 156 9.10e-38 129
Msa0803940 AT5G62165.12 41.667 156 89 1 1 154 1 156 9.10e-38 129
Msa0803940 AT5G62165.11 41.667 156 89 1 1 154 1 156 9.10e-38 129
Msa0803940 AT4G22950.2 44.186 172 91 2 1 169 1 170 4.00e-37 128
Msa0803940 AT5G62165.6 44.521 146 79 1 1 144 1 146 9.17e-37 127
Msa0803940 AT5G62165.9 44.521 146 79 1 1 144 1 146 9.17e-37 127
Msa0803940 AT5G62165.7 44.521 146 79 1 1 144 1 146 9.17e-37 127
Msa0803940 AT5G62165.8 44.521 146 79 1 1 144 1 146 9.17e-37 127
Msa0803940 AT5G62165.13 44.521 146 79 1 1 144 1 146 9.17e-37 127
Msa0803940 AT5G51870.1 40.805 174 100 2 1 171 1 174 1.42e-36 128
Msa0803940 AT4G22950.3 43.860 171 91 2 1 168 1 169 4.93e-36 127
Msa0803940 AT4G22950.1 43.860 171 91 2 1 168 1 169 4.93e-36 127
Msa0803940 AT3G57390.3 41.436 181 97 1 1 172 1 181 2.93e-35 125
Msa0803940 AT5G51870.4 42.675 157 87 2 1 154 1 157 4.07e-35 125
Msa0803940 AT3G02310.2 43.103 174 96 3 1 171 1 174 4.29e-35 124
Msa0803940 AT1G24260.1 40.230 174 91 3 1 165 1 170 5.17e-35 125
Msa0803940 AT3G57390.1 41.436 181 97 1 1 172 1 181 5.61e-35 125
Msa0803940 AT5G51870.3 42.675 157 87 2 1 154 11 167 5.93e-35 124
Msa0803940 AT3G02310.1 43.023 172 95 3 1 169 1 172 6.13e-35 125
Msa0803940 AT3G30260.1 43.421 152 81 3 1 148 1 151 7.25e-35 125
Msa0803940 AT4G24540.1 38.636 176 106 1 1 174 1 176 8.02e-35 124
Msa0803940 AT1G24260.2 40.351 171 96 2 1 165 1 171 2.14e-34 124
Msa0803940 AT5G15800.1 41.618 173 98 3 1 170 1 173 2.85e-34 123
Msa0803940 AT5G15800.2 41.618 173 98 3 1 170 1 173 4.17e-34 123
Msa0803940 AT5G23260.2 39.645 169 99 2 1 167 1 168 4.38e-34 123
Msa0803940 AT5G23260.4 39.645 169 99 2 1 167 17 184 7.25e-34 123
Msa0803940 AT4G11880.2 45.570 158 80 3 1 154 1 156 7.89e-34 120
Msa0803940 AT4G11880.3 45.570 158 80 3 1 154 1 156 7.89e-34 120
Msa0803940 AT1G24260.3 41.875 160 87 2 1 154 1 160 8.45e-34 122
Msa0803940 AT2G03710.3 36.932 176 104 3 1 171 1 174 8.55e-34 120
Msa0803940 AT5G51870.2 44.218 147 79 2 1 144 1 147 1.21e-33 119
Msa0803940 AT2G03710.2 35.079 191 114 4 1 186 1 186 1.33e-33 122
Msa0803940 AT2G03710.1 35.079 191 114 4 1 186 1 186 1.33e-33 122
Msa0803940 AT5G51870.5 44.218 147 79 2 1 144 24 170 4.10e-33 119
Msa0803940 AT4G11880.4 46.939 147 74 3 1 144 1 146 7.33e-32 116
Msa0803940 AT4G11880.1 46.939 147 74 3 1 144 1 146 7.33e-32 116
Msa0803940 AT5G23260.1 39.645 169 94 3 1 167 17 179 1.59e-31 117
Msa0803940 AT5G23260.3 42.282 149 83 2 1 147 1 148 1.24e-30 114
Msa0803940 AT3G54340.1 34.513 226 118 6 1 217 1 205 5.56e-30 112
Msa0803940 AT5G62165.14 54.118 85 39 0 1 85 1 85 2.45e-28 103
Msa0803940 AT5G20240.2 41.096 146 67 4 1 137 1 136 7.71e-28 103
Msa0803940 AT5G65060.3 33.871 186 110 4 1 180 1 179 4.11e-27 103
Msa0803940 AT5G20240.1 40.523 153 72 4 1 144 1 143 5.36e-27 103
Msa0803940 AT5G65060.1 32.000 200 117 4 1 198 1 183 9.07e-27 102
Msa0803940 AT5G65050.2 35.088 171 102 3 1 169 1 164 3.03e-26 100
Msa0803940 AT5G65050.3 32.000 200 117 4 1 198 1 183 8.48e-26 100
Msa0803940 AT5G65060.2 34.171 199 103 6 1 198 1 172 1.70e-25 99.0
Msa0803940 AT1G71692.1 36.264 182 100 3 1 169 1 179 4.82e-25 98.6
Msa0803940 AT5G65050.5 32.663 199 106 4 1 198 1 172 8.06e-25 97.4
Msa0803940 AT5G10140.4 36.538 156 90 4 1 154 1 149 6.83e-24 94.7
Msa0803940 AT5G10140.2 36.986 146 83 3 1 144 1 139 3.83e-23 92.4
Msa0803940 AT5G10140.1 37.671 146 82 4 1 144 1 139 4.29e-23 93.2
Msa0803940 AT5G65050.1 35.484 155 91 3 1 153 1 148 7.66e-23 92.0
Msa0803940 AT5G65080.3 37.580 157 87 5 1 154 8 156 8.51e-23 92.0
Msa0803940 AT5G10140.3 36.986 146 83 3 1 144 1 139 8.78e-23 92.0
Msa0803940 AT5G65070.1 29.864 221 132 5 1 219 1 200 1.42e-22 91.7
Msa0803940 AT1G77080.11 35.838 173 102 3 1 171 1 166 1.18e-21 88.6
Msa0803940 AT1G77080.5 36.585 164 95 3 1 162 1 157 3.24e-21 87.4
Msa0803940 AT1G77080.4 36.585 164 95 3 1 162 1 157 3.95e-21 87.8
Msa0803940 AT1G31140.2 38.411 151 84 3 1 144 1 149 9.07e-21 87.4
Msa0803940 AT1G31140.1 37.748 151 83 3 1 144 1 147 9.27e-21 87.4
Msa0803940 AT5G65070.4 36.620 142 81 3 1 140 1 135 1.09e-20 85.5
Msa0803940 AT5G65070.2 28.226 248 132 8 1 219 1 231 5.52e-20 85.5
Msa0803940 AT5G65070.5 50.000 76 37 1 1 75 1 76 1.54e-19 84.0
Msa0803940 AT2G34440.1 52.174 69 33 0 1 69 1 69 7.74e-19 81.3
Msa0803940 AT1G77080.8 33.514 185 99 4 1 162 1 184 1.03e-18 82.0
Msa0803940 AT1G22130.1 31.217 189 89 4 1 148 1 189 3.65e-18 82.4
Msa0803940 AT1G77980.1 32.258 186 85 4 1 145 1 186 3.80e-18 82.4
Msa0803940 AT5G65070.3 55.932 59 26 0 1 59 1 59 1.37e-17 79.3
Msa0803940 AT5G65080.2 31.336 217 107 6 1 203 8 196 5.48e-17 77.0
Msa0803940 AT1G77080.2 35.185 162 96 2 1 162 1 153 1.26e-16 75.9
Msa0803940 AT3G66656.1 47.826 69 36 0 1 69 1 69 2.53e-16 74.7
Msa0803940 AT2G24840.1 47.826 69 36 0 1 69 62 130 3.25e-16 75.9
Msa0803940 AT1G77950.3 46.914 81 41 2 1 80 1 80 1.23e-15 74.3
Msa0803940 AT1G77950.2 46.914 81 41 2 1 80 1 80 1.23e-15 74.3
Msa0803940 AT1G77950.1 46.914 81 41 2 1 80 1 80 1.23e-15 74.3
Msa0803940 AT1G77950.4 46.914 81 41 2 1 80 1 80 1.23e-15 74.3
Msa0803940 AT3G04100.1 30.714 140 77 4 2 141 14 133 3.58e-15 72.0
Msa0803940 AT1G72350.1 51.471 68 31 1 2 69 43 108 4.64e-15 72.0
Msa0803940 AT1G77080.12 35.714 154 90 2 1 154 1 145 5.14e-15 70.5
Msa0803940 AT5G60440.1 47.059 68 36 0 2 69 7 74 2.58e-14 71.2
Msa0803940 AT1G01530.1 41.791 67 39 0 1 67 6 72 7.14e-14 69.3
Msa0803940 AT1G18750.4 42.254 71 39 1 1 69 1 71 1.16e-13 70.1
Msa0803940 AT4G36590.1 44.118 68 38 0 2 69 7 74 1.33e-13 68.6
Msa0803940 AT1G18750.1 42.254 71 39 1 1 69 1 71 1.34e-13 69.7
Msa0803940 AT1G18750.3 42.254 71 39 1 1 69 1 71 1.57e-13 69.7
Msa0803940 AT2G03060.3 46.479 71 36 1 1 69 1 71 1.75e-13 69.3
Msa0803940 AT2G03060.7 46.479 71 36 1 1 69 1 71 1.75e-13 69.3
Msa0803940 AT2G03060.1 46.479 71 36 1 1 69 1 71 1.75e-13 69.3
Msa0803940 AT1G47760.1 34.259 108 60 2 1 108 1 97 1.82e-13 67.0
Msa0803940 AT2G03060.2 39.252 107 56 3 1 105 1 100 1.92e-13 69.3
Msa0803940 AT4G18960.4 34.746 118 75 1 54 169 56 173 2.24e-13 66.6
Msa0803940 AT1G65360.1 35.000 80 52 0 1 80 6 85 2.68e-13 67.4
Msa0803940 AT4G37435.1 44.286 70 38 1 1 69 1 70 6.05e-13 65.5
Msa0803940 AT4G18960.3 33.898 118 76 1 54 169 56 173 6.24e-13 66.6
Msa0803940 AT4G18960.2 33.898 118 76 1 54 169 56 173 6.24e-13 66.6
Msa0803940 AT2G26320.1 40.845 71 40 1 1 69 17 87 1.94e-12 62.4
Msa0803940 AT1G69540.1 54.717 53 24 0 1 53 1 53 2.25e-12 65.9
Msa0803940 AT1G69540.2 54.717 53 24 0 1 53 1 53 3.10e-12 65.9
Msa0803940 AT5G60910.2 25.143 175 118 3 62 223 1 175 1.08e-11 62.0
Msa0803940 AT1G69120.3 32.727 110 72 2 62 169 1 110 1.30e-11 62.0
Msa0803940 AT1G29962.1 41.176 68 40 0 2 69 8 75 3.64e-11 60.8
Msa0803940 AT1G28460.1 41.176 68 40 0 2 69 8 75 5.33e-11 60.1

Find 42 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGGGAGAACAGCTTTA+TGG 0.252080 5_3:-19427450 Msa0803940:CDS
GTTGATTCTCTAGGTCTTGT+AGG 0.264680 5_3:+19427412 None:intergenic
CATACCTTGACTTCAGATTC+TGG 0.269362 5_3:+19428210 None:intergenic
AAACACACAACTACACAAAA+AGG 0.340273 5_3:-19427073 Msa0803940:intron
TTACCTTTCGGTTCAGCTCT+TGG 0.342679 5_3:+19427246 None:intergenic
ATTCTGGATTTGTCACTTGT+TGG 0.346732 5_3:+19428226 None:intergenic
CCAAGGAGTTCGCATGAAAA+AGG 0.352891 5_3:-19427376 Msa0803940:intron
TTCATAAAGCTTTCCAGTGC+TGG 0.356821 5_3:+19431516 None:intergenic
CAATTTCCATACGGTGTTCA+TGG 0.363241 5_3:-19426750 Msa0803940:CDS
TTGAGCCCATAGGCAATTGA+TGG 0.420705 5_3:-19427466 Msa0803940:intron
CACAATATTCTTGCTCAGGC+TGG 0.421967 5_3:+19426688 None:intergenic
GTCTCACAATATTCTTGCTC+AGG 0.460316 5_3:+19426684 None:intergenic
TGAAAATTAAGAATGGGAAG+AGG 0.475171 5_3:-19431673 None:intergenic
ATTGAAATGTCGTAGGTGTA+TGG 0.485215 5_3:-19426819 Msa0803940:intron
CTTGTTATATTCTCCAGCAC+TGG 0.491988 5_3:-19431529 Msa0803940:CDS
ACTTTCTCAAAGAGGAGAAA+GGG 0.497305 5_3:-19431604 Msa0803940:CDS
GAAAATTAAGAATGGGAAGA+GGG 0.497354 5_3:-19431672 None:intergenic
CACTTTCTCAAAGAGGAGAA+AGG 0.498818 5_3:-19431605 Msa0803940:CDS
ACAAGACCTAGAGAATCAAC+TGG 0.503105 5_3:-19427409 Msa0803940:CDS
TAAGTTCCAGTTGATTCTCT+AGG 0.509792 5_3:+19427403 None:intergenic
ACAGGGAAACATAATCCATC+AGG 0.520605 5_3:-19427139 Msa0803940:intron
CATAATCCATCAGGAAAATG+TGG 0.527713 5_3:-19427130 Msa0803940:CDS
CCATACGGTGTTCATGGAGG+AGG 0.529836 5_3:-19426744 Msa0803940:CDS
ATCCTATGTGATGCACAAGT+TGG 0.534377 5_3:-19431553 Msa0803940:CDS
CCTCCTCCATGAACACCGTA+TGG 0.536688 5_3:+19426744 None:intergenic
CAAGAATATTGTGAGACCTC+AGG 0.548980 5_3:-19426678 Msa0803940:CDS
AAATGTGGAGCTCTATAAGA+AGG 0.555562 5_3:-19427115 Msa0803940:CDS
TGAGCCCATAGGCAATTGAT+GGG 0.555902 5_3:-19427465 Msa0803940:intron
GCATTTGTTCAATTTCCATA+CGG 0.559750 5_3:-19426759 Msa0803940:CDS
TTTATGAATATGCAAATACC+AGG 0.561818 5_3:-19431501 Msa0803940:intron
TGTTGCACTTGCACTGCCTG+AGG 0.561931 5_3:+19426662 None:intergenic
GAGGGAAGATTGTGATTCGA+AGG 0.568621 5_3:-19431654 Msa0803940:CDS
AAATCCAGAATCTGAAGTCA+AGG 0.573093 5_3:-19428214 Msa0803940:intron
CAACTGGAACTTAGCCTCCA+AGG 0.574769 5_3:-19427393 Msa0803940:CDS
AAAGTCTACAAGAAAACCAT+AGG 0.574987 5_3:-19427568 Msa0803940:intron
GGCAAGTCACTTTCTCAAAG+AGG 0.589125 5_3:-19431612 Msa0803940:CDS
TGAGAGATATAACATTTGCA+AGG 0.603510 5_3:-19428253 Msa0803940:CDS
GGATCGACAACTGTACAAGC+AGG 0.608335 5_3:-19431633 Msa0803940:CDS
AATCCAAGAGCTGAACCGAA+AGG 0.649030 5_3:-19427249 Msa0803940:intron
GTCCAACTTGTGCATCACAT+AGG 0.662724 5_3:+19431551 None:intergenic
TTTCCATACGGTGTTCATGG+AGG 0.673202 5_3:-19426747 Msa0803940:CDS
AATGTCGTAGGTGTATGGCA+CGG 0.795308 5_3:-19426814 Msa0803940:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAATTTATTAGATAAAA+TGG + chr5_3:19427499-19427518 None:intergenic 10.0%
!!! TTTTTTTTTATCTGTAATTT+TGG + chr5_3:19428479-19428498 None:intergenic 10.0%
!! AATTTAAGTCATATTTATTA+AGG - chr5_3:19428994-19429013 Msa0803940:intron 10.0%
!! ACAAATTTAATTATGAATGA+TGG - chr5_3:19426881-19426900 Msa0803940:intron 15.0%
!! ATAGAACTACTATATATTAA+AGG - chr5_3:19426937-19426956 Msa0803940:intron 15.0%
!!! AAATTTGTTATTGATGTATT+TGG - chr5_3:19426993-19427012 Msa0803940:intron 15.0%
!!! CTAATTAATTGATGTATTTT+AGG - chr5_3:19427173-19427192 Msa0803940:intron 15.0%
!!! TTAATTATAATCACTTTTCT+AGG - chr5_3:19427451-19427470 Msa0803940:CDS 15.0%
!! TTATATATAAATTGACCAAA+AGG + chr5_3:19427627-19427646 None:intergenic 15.0%
!! AATTGTTAAGATTCAAATTT+CGG + chr5_3:19427739-19427758 None:intergenic 15.0%
!!! TTTACTTCATTTTCAATATT+TGG - chr5_3:19428136-19428155 Msa0803940:intron 15.0%
!! ATTGAATATTGATATATTCA+TGG - chr5_3:19428178-19428197 Msa0803940:intron 15.0%
!!! CAATATTTTGTTCATTTATT+TGG + chr5_3:19428221-19428240 None:intergenic 15.0%
!! ATAAATGAACAAAATATTGA+TGG - chr5_3:19428222-19428241 Msa0803940:CDS 15.0%
!! GCATTCAATATAAAAAAAAT+GGG + chr5_3:19428730-19428749 None:intergenic 15.0%
!! TTATTAAGGATTATTATCAT+TGG - chr5_3:19429008-19429027 Msa0803940:intron 15.0%
!! AGAACTTTATATATTTACAA+TGG - chr5_3:19429155-19429174 Msa0803940:intron 15.0%
!! ATATATAGATTGTATTACAA+GGG + chr5_3:19429313-19429332 None:intergenic 15.0%
!! TATATATAGATTGTATTACA+AGG + chr5_3:19429314-19429333 None:intergenic 15.0%
!! ATAAAAATTTGTCATGAAAA+TGG + chr5_3:19429392-19429411 None:intergenic 15.0%
!! AATTGATATATTTAATGCAT+GGG + chr5_3:19430478-19430497 None:intergenic 15.0%
!!! TTTTAATTTCTTTAACTACA+GGG - chr5_3:19431161-19431180 Msa0803940:intron 15.0%
!! ATATATATGTATATCAAACC+TGG + chr5_3:19426837-19426856 None:intergenic 20.0%
!!! TAATATATAGTAGTTCTATC+AGG + chr5_3:19426936-19426955 None:intergenic 20.0%
!! CAAGATATATGAATATATCA+AGG - chr5_3:19426961-19426980 Msa0803940:intron 20.0%
!! TGTGTATAGAAAACATATAT+TGG - chr5_3:19427039-19427058 Msa0803940:intron 20.0%
!!! ATCATTAGACAATTTTTTAC+AGG + chr5_3:19427121-19427140 None:intergenic 20.0%
!!! GTAGCAACAAATTTTAAATT+AGG + chr5_3:19427149-19427168 None:intergenic 20.0%
!!! GCTGATTTTTTTTAATCATT+AGG + chr5_3:19427431-19427450 None:intergenic 20.0%
!! AATTTATGCTGTAAAAACAA+AGG - chr5_3:19427511-19427530 Msa0803940:intron 20.0%
!! TCATATGAATTCTCTAAATT+TGG + chr5_3:19427661-19427680 None:intergenic 20.0%
!!! TTTTTACAAAATTACTTTCG+TGG + chr5_3:19427845-19427864 None:intergenic 20.0%
!! TCTTGTTAAGATATACTAAT+TGG - chr5_3:19427927-19427946 Msa0803940:intron 20.0%
!! CTATTAGAATGCATTATAAA+TGG - chr5_3:19427989-19428008 Msa0803940:intron 20.0%
!! ATTGAAAATGAAGTAAATAC+TGG + chr5_3:19428133-19428152 None:intergenic 20.0%
!!! TATTTTGTTCATTTATTTGG+TGG + chr5_3:19428218-19428237 None:intergenic 20.0%
!!! TCATGTCATTTTCTATTTAT+GGG + chr5_3:19428345-19428364 None:intergenic 20.0%
!!! TTATCAAAATCCTTTTCTAT+AGG + chr5_3:19428541-19428560 None:intergenic 20.0%
!!! AATACTGGTTAAAATAATCA+TGG + chr5_3:19428599-19428618 None:intergenic 20.0%
!!! CTAATTTTGTCATAATAACA+GGG + chr5_3:19428640-19428659 None:intergenic 20.0%
!!! TCTAATTTTGTCATAATAAC+AGG + chr5_3:19428641-19428660 None:intergenic 20.0%
!! GGCATTCAATATAAAAAAAA+TGG + chr5_3:19428731-19428750 None:intergenic 20.0%
!!! AACTTAGTTTTACCAATTTA+AGG - chr5_3:19428755-19428774 Msa0803940:intron 20.0%
!!! ATGACTTAAATTTTGCTTTT+GGG + chr5_3:19428986-19429005 None:intergenic 20.0%
!!! TATGACTTAAATTTTGCTTT+TGG + chr5_3:19428987-19429006 None:intergenic 20.0%
!!! CTAGCTTTAATTACATTATA+TGG + chr5_3:19429083-19429102 None:intergenic 20.0%
!!! TTTTGCTGTTAAAAAAACAA+AGG + chr5_3:19429133-19429152 None:intergenic 20.0%
!! GAAATATGTACAAATAGTAT+AGG - chr5_3:19429177-19429196 Msa0803940:intron 20.0%
!! TCATATATTTAGATGGTTTA+GGG + chr5_3:19429590-19429609 None:intergenic 20.0%
!! ATCATATATTTAGATGGTTT+AGG + chr5_3:19429591-19429610 None:intergenic 20.0%
!! AAAACTTTATATGTGAAGAT+TGG + chr5_3:19429961-19429980 None:intergenic 20.0%
!!! ATCAATGATACTGATAATTT+TGG - chr5_3:19429986-19430005 Msa0803940:intron 20.0%
!!! TCAATGATACTGATAATTTT+GGG - chr5_3:19429987-19430006 Msa0803940:intron 20.0%
!! AATATGATTATTCTTTCTTG+TGG - chr5_3:19430022-19430041 Msa0803940:intron 20.0%
!! TTCATGAAACAACAAAAAAA+TGG + chr5_3:19430182-19430201 None:intergenic 20.0%
!! TGTTTCATGAATTTATTGAA+TGG - chr5_3:19430191-19430210 Msa0803940:intron 20.0%
!! TTCTTCATGAATTTATTGAA+TGG - chr5_3:19430237-19430256 Msa0803940:intron 20.0%
!!! TAAATTATAATCCCATTTTG+GGG + chr5_3:19430356-19430375 None:intergenic 20.0%
!!! GTAAATTATAATCCCATTTT+GGG + chr5_3:19430357-19430376 None:intergenic 20.0%
!!! TGTAAATTATAATCCCATTT+TGG + chr5_3:19430358-19430377 None:intergenic 20.0%
!! ATTGATATATTTAATGCATG+GGG + chr5_3:19430477-19430496 None:intergenic 20.0%
!! CAATTGATATATTTAATGCA+TGG + chr5_3:19430479-19430498 None:intergenic 20.0%
!! ATGATTTGATATCTGATATT+AGG - chr5_3:19430609-19430628 Msa0803940:intron 20.0%
!! AAAAGGAAACAAAATGTTAT+TGG + chr5_3:19430651-19430670 None:intergenic 20.0%
!! ATCAAGTAAAATAATGTCAA+TGG + chr5_3:19430680-19430699 None:intergenic 20.0%
!!! TACTTGATAACTTATAGTTT+TGG - chr5_3:19430692-19430711 Msa0803940:intron 20.0%
!!! GTTTTAATTTCTTTAACTAC+AGG - chr5_3:19431160-19431179 Msa0803940:intron 20.0%
! TTTATGAATATGCAAATACC+AGG - chr5_3:19426816-19426835 Msa0803940:intron 25.0%
! TAAGCATGATATCCATTTAT+GGG + chr5_3:19427075-19427094 None:intergenic 25.0%
! TGATAACTAAACATACATCA+AGG + chr5_3:19427336-19427355 None:intergenic 25.0%
! CTTATAATCACTATTGAAGA+TGG - chr5_3:19427357-19427376 Msa0803940:intron 25.0%
!!! AATTCTCTAAATTTGGTGTT+TGG + chr5_3:19427654-19427673 None:intergenic 25.0%
!! CAATTTTCTAACAATGAATC+AGG - chr5_3:19427891-19427910 Msa0803940:intron 25.0%
! TAGTATATCTTAACAAGATC+TGG + chr5_3:19427925-19427944 None:intergenic 25.0%
!! AATTGGTAGTATAACATCTT+TGG - chr5_3:19427944-19427963 Msa0803940:intron 25.0%
! GTATAGTGAAACCTTATAAA+TGG - chr5_3:19428021-19428040 Msa0803940:intron 25.0%
! ACATAATGCATCCATTTATA+AGG + chr5_3:19428003-19428022 None:intergenic 25.0%
! CAAATGATAAGCATATTTCA+AGG - chr5_3:19428277-19428296 Msa0803940:intron 25.0%
! GCATATTTCAAGGAAATATT+CGG - chr5_3:19428287-19428306 Msa0803940:intron 25.0%
!!! GTCATGTCATTTTCTATTTA+TGG + chr5_3:19428346-19428365 None:intergenic 25.0%
!! GTGACTAATTCTTTTTATAG+TGG + chr5_3:19428457-19428476 None:intergenic 25.0%
! GTTGAGAGACATATAAAATT+TGG - chr5_3:19428572-19428591 Msa0803940:intron 25.0%
!! AACCAGTATTGAAATTCAAT+CGG - chr5_3:19428609-19428628 Msa0803940:intron 25.0%
!!! TTAGTTTTACCAATTTAAGG+TGG - chr5_3:19428758-19428777 Msa0803940:intron 25.0%
!! AATCATGCATACCTAATTTT+TGG + chr5_3:19428787-19428806 None:intergenic 25.0%
! TAAGCTATATATGCAAAGAT+CGG + chr5_3:19428810-19428829 None:intergenic 25.0%
! CATATATAGCTTAAGCTTAT+TGG - chr5_3:19428817-19428836 Msa0803940:intron 25.0%
!!! TTAAATTTTGCTTTTGGGAT+GGG + chr5_3:19428981-19429000 None:intergenic 25.0%
! ATGTAAACACTCATAGAATA+TGG - chr5_3:19429336-19429355 Msa0803940:intron 25.0%
!!! TTGTCATGAAAATGGTTTTT+TGG + chr5_3:19429384-19429403 None:intergenic 25.0%
! TTTGGCATCATATATTTAGA+TGG + chr5_3:19429597-19429616 None:intergenic 25.0%
! NNNNNNNNNNGGAGAGCTAT+GGG - chr5_3:19429824-19429843 Msa0803940:intron 25.0%
!! CAATGATACTGATAATTTTG+GGG - chr5_3:19429988-19430007 Msa0803940:intron 25.0%
!! AATGATACTGATAATTTTGG+GGG - chr5_3:19429989-19430008 Msa0803940:intron 25.0%
! AATGTCAATGGTTAATGAAA+AGG + chr5_3:19430668-19430687 None:intergenic 25.0%
!!! ATAACTTATAGTTTTGGCAA+AGG - chr5_3:19430698-19430717 Msa0803940:intron 25.0%
!!! TAACTTATAGTTTTGGCAAA+GGG - chr5_3:19430699-19430718 Msa0803940:intron 25.0%
! AATTATCTTGATCAAGTAAG+TGG + chr5_3:19430979-19430998 None:intergenic 25.0%
!!! TGATTCAACTTGTTAATTTC+TGG + chr5_3:19431018-19431037 None:intergenic 25.0%
! AAGTTACATAAAATAGCAGT+TGG - chr5_3:19431344-19431363 Msa0803940:intron 25.0%
GTAAGCATGATATCCATTTA+TGG + chr5_3:19427076-19427095 None:intergenic 30.0%
AAGTTCAAAAACACCATAAC+AGG - chr5_3:19427261-19427280 Msa0803940:CDS 30.0%
ACTATTGAAGATGGTAAGTA+GGG - chr5_3:19427366-19427385 Msa0803940:intron 30.0%
AGGAATCTAACTCAATACTT+TGG + chr5_3:19427411-19427430 None:intergenic 30.0%
!! TTCAAGTCATTTTGTCCTTT+TGG - chr5_3:19427609-19427628 Msa0803940:CDS 30.0%
TCATATGCAAATTGATCAAG+AGG - chr5_3:19427758-19427777 Msa0803940:intron 30.0%
ACAGTACAAGAAGGTTAATT+AGG + chr5_3:19428072-19428091 None:intergenic 30.0%
! ATGAAGTAAATACTGGCTAA+TGG + chr5_3:19428126-19428145 None:intergenic 30.0%
GAAACTTCTTAACATGCAAA+TGG - chr5_3:19428244-19428263 Msa0803940:CDS 30.0%
ATTTCAAGGAAATATTCGGA+AGG - chr5_3:19428291-19428310 Msa0803940:intron 30.0%
TTTCAAGGAAATATTCGGAA+GGG - chr5_3:19428292-19428311 Msa0803940:intron 30.0%
TCCTCTTAGATTATGTTGTT+TGG - chr5_3:19428416-19428435 Msa0803940:intron 30.0%
TCCAAACAACATAATCTAAG+AGG + chr5_3:19428420-19428439 None:intergenic 30.0%
! AAAATCCTTTTCTATAGGAC+CGG + chr5_3:19428536-19428555 None:intergenic 30.0%
TATGTCTCTCAACTGAATTT+CGG + chr5_3:19428565-19428584 None:intergenic 30.0%
! ACCAGTATTGAAATTCAATC+GGG - chr5_3:19428610-19428629 Msa0803940:intron 30.0%
! ATTGGTAAAACTAAGTTGAC+AGG + chr5_3:19428752-19428771 None:intergenic 30.0%
!! TTTTGGAAACCACCTTAAAT+TGG + chr5_3:19428770-19428789 None:intergenic 30.0%
TAAGGTGGTTTCCAAAAATT+AGG - chr5_3:19428773-19428792 Msa0803940:intron 30.0%
! ACACTTGACATTGACTAAAA+AGG + chr5_3:19428882-19428901 None:intergenic 30.0%
!! TTCCATATAATGGAAGTGTT+AGG + chr5_3:19428914-19428933 None:intergenic 30.0%
!! TTCCATTATATGGAAGTGTT+AGG - chr5_3:19428919-19428938 Msa0803940:intron 30.0%
!! CTTAAATTTTGCTTTTGGGA+TGG + chr5_3:19428982-19429001 None:intergenic 30.0%
TTTGTCGATATTAGAACTAG+TGG + chr5_3:19429060-19429079 None:intergenic 30.0%
TGTACAGTTTATCATAGCTT+GGG + chr5_3:19429288-19429307 None:intergenic 30.0%
ATGTACAGTTTATCATAGCT+TGG + chr5_3:19429289-19429308 None:intergenic 30.0%
!!! AAATGGTTTTTTGGCAAGAA+AGG + chr5_3:19429375-19429394 None:intergenic 30.0%
CAAACAATACTTGGTCAAAT+TGG + chr5_3:19429468-19429487 None:intergenic 30.0%
! CAATTTGACCAAGTATTGTT+TGG - chr5_3:19429466-19429485 Msa0803940:intron 30.0%
AAAAGAAAGGAAGAAGCAAA+TGG - chr5_3:19429688-19429707 Msa0803940:intron 30.0%
ATGGAAGAAATAGAAGACAT+TGG - chr5_3:19429707-19429726 Msa0803940:intron 30.0%
TGGAAGAAATAGAAGACATT+GGG - chr5_3:19429708-19429727 Msa0803940:intron 30.0%
TGAGAGATATAACATTTGCA+AGG - chr5_3:19430064-19430083 Msa0803940:intron 30.0%
GTGATGTAACTAGATATCTT+TGG - chr5_3:19430383-19430402 Msa0803940:intron 30.0%
!! AGTTTTGACAGTTGAAAGAT+GGG + chr5_3:19430409-19430428 None:intergenic 30.0%
!! AAGTTTTGACAGTTGAAAGA+TGG + chr5_3:19430410-19430429 None:intergenic 30.0%
! TTGGATGATAGTGCTTAATT+AGG + chr5_3:19430505-19430524 None:intergenic 30.0%
GTTATTGGATGATATTCAAC+TGG + chr5_3:19430636-19430655 None:intergenic 30.0%
AAAGTCTACAAGAAAACCAT+AGG - chr5_3:19430749-19430768 Msa0803940:intron 30.0%
ATGCTGAATGAATTAGTTGA+AGG + chr5_3:19430780-19430799 None:intergenic 30.0%
AAACACACAACTACACAAAA+AGG - chr5_3:19431244-19431263 Msa0803940:intron 30.0%
GCATTTGTTCAATTTCCATA+CGG - chr5_3:19431558-19431577 Msa0803940:CDS 30.0%
ACTTTCTCAAAGAGGAGAAA+GGG - chr5_3:19426713-19426732 Msa0803940:CDS 35.0%
! TTTTCTATACACACCAGTCA+AGG + chr5_3:19427032-19427051 None:intergenic 35.0%
GGAAGATGTATACCCATAAA+TGG - chr5_3:19427060-19427079 Msa0803940:intron 35.0%
CACTATTGAAGATGGTAAGT+AGG - chr5_3:19427365-19427384 Msa0803940:intron 35.0%
TTCAAGGAAATATTCGGAAG+GGG - chr5_3:19428293-19428312 Msa0803940:intron 35.0%
!!! TTTTTTGTCTCTTAACCCTC+CGG - chr5_3:19428514-19428533 Msa0803940:intron 35.0%
TCCCGATTGAATTTCAATAC+TGG + chr5_3:19428614-19428633 None:intergenic 35.0%
TGCCTAACACTTCCATTATA+TGG - chr5_3:19428909-19428928 Msa0803940:intron 35.0%
TGCCTAACACTTCCATATAA+TGG + chr5_3:19428924-19428943 None:intergenic 35.0%
GTACAGTTTATCATAGCTTG+GGG + chr5_3:19429287-19429306 None:intergenic 35.0%
AACACTCATAGAATATGGCA+AGG - chr5_3:19429341-19429360 Msa0803940:intron 35.0%
ACAATACTTGGTCAAATTGG+AGG + chr5_3:19429465-19429484 None:intergenic 35.0%
ATGGTATGCCAAACAATACT+TGG + chr5_3:19429477-19429496 None:intergenic 35.0%
!! TAGATGGTTTAGGGTTAGTT+CGG + chr5_3:19429581-19429600 None:intergenic 35.0%
AGCCTAAATGTTTGTTTGCA+GGG + chr5_3:19429624-19429643 None:intergenic 35.0%
AAGCCTAAATGTTTGTTTGC+AGG + chr5_3:19429625-19429644 None:intergenic 35.0%
!! TTAGGCTTTGTTTGCAAGTT+TGG - chr5_3:19429637-19429656 Msa0803940:intron 35.0%
AGGGTCTTGAGAAAAAAGAA+AGG - chr5_3:19429675-19429694 Msa0803940:intron 35.0%
CTGAGTTTAAACTCGGATAA+AGG + chr5_3:19429895-19429914 None:intergenic 35.0%
CTTTATCCGAGTTTAAACTC+AGG - chr5_3:19429893-19429912 Msa0803940:intron 35.0%
TGAAGATTGGATAACTCAAC+TGG + chr5_3:19429948-19429967 None:intergenic 35.0%
! ATTCTGGATTTGTCACTTGT+TGG + chr5_3:19430094-19430113 None:intergenic 35.0%
! AAATCCAGAATCTGAAGTCA+AGG - chr5_3:19430103-19430122 Msa0803940:intron 35.0%
TACTAATCTTCTCCCCAAAA+TGG - chr5_3:19430341-19430360 Msa0803940:intron 35.0%
ACTAATCTTCTCCCCAAAAT+GGG - chr5_3:19430342-19430361 Msa0803940:intron 35.0%
CATCCAAACACTAGAAATTG+AGG - chr5_3:19430518-19430537 Msa0803940:intron 35.0%
!! CTTCCTCAATTTCTAGTGTT+TGG + chr5_3:19430524-19430543 None:intergenic 35.0%
! AAAGGGAGGCAGAAATTTTA+AGG - chr5_3:19430716-19430735 Msa0803940:intron 35.0%
TTAGTTGAAGGTTGTACCTA+TGG + chr5_3:19430768-19430787 None:intergenic 35.0%
AATGTTAGTGCTCTCATACA+TGG + chr5_3:19430831-19430850 None:intergenic 35.0%
! TAAGTTCCAGTTGATTCTCT+AGG + chr5_3:19430917-19430936 None:intergenic 35.0%
! CAAGTTGAATCAAATTCTGC+AGG - chr5_3:19431026-19431045 Msa0803940:intron 35.0%
TTCGAGAGAAATGTTAGTGA+AGG + chr5_3:19431113-19431132 None:intergenic 35.0%
CATAATCCATCAGGAAAATG+TGG - chr5_3:19431187-19431206 Msa0803940:intron 35.0%
AAATGTGGAGCTCTATAAGA+AGG - chr5_3:19431202-19431221 Msa0803940:intron 35.0%
! GTTGTGTGTTTTCTTGTTGA+AGG + chr5_3:19431235-19431254 None:intergenic 35.0%
CATCACATTCACTTAAGCTT+AGG - chr5_3:19431460-19431479 Msa0803940:intron 35.0%
TGTGACAATTGAAATGTCGT+AGG - chr5_3:19431491-19431510 Msa0803940:intron 35.0%
ATTGAAATGTCGTAGGTGTA+TGG - chr5_3:19431498-19431517 Msa0803940:intron 35.0%
CACTTTCTCAAAGAGGAGAA+AGG - chr5_3:19426712-19426731 Msa0803940:CDS 40.0%
ATCCTATGTGATGCACAAGT+TGG - chr5_3:19426764-19426783 Msa0803940:CDS 40.0%
! CTTGTTATATTCTCCAGCAC+TGG - chr5_3:19426788-19426807 Msa0803940:CDS 40.0%
TTCATAAAGCTTTCCAGTGC+TGG + chr5_3:19426804-19426823 None:intergenic 40.0%
TCAGAGATTTGATCCTTGAC+TGG - chr5_3:19427016-19427035 Msa0803940:intron 40.0%
TACTGTGTGCACTTGTTCAT+AGG - chr5_3:19428086-19428105 Msa0803940:intron 40.0%
TCAAGGAAATATTCGGAAGG+GGG - chr5_3:19428294-19428313 Msa0803940:intron 40.0%
GTCGATATTAGAACTAGTGG+AGG + chr5_3:19429057-19429076 None:intergenic 40.0%
AACCCTACAGAGAAGCAAAA+AGG - chr5_3:19429234-19429253 Msa0803940:intron 40.0%
! TGCCTTTTTGCTTCTCTGTA+GGG + chr5_3:19429239-19429258 None:intergenic 40.0%
! TTGCCTTTTTGCTTCTCTGT+AGG + chr5_3:19429240-19429259 None:intergenic 40.0%
TCTACAACTTCATCCACCTT+AGG - chr5_3:19429416-19429435 Msa0803940:intron 40.0%
AAGTTCAAACACACCTAAGG+TGG + chr5_3:19429432-19429451 None:intergenic 40.0%
CCTAAGTTCAAACACACCTA+AGG + chr5_3:19429435-19429454 None:intergenic 40.0%
CCTTAGGTGTGTTTGAACTT+AGG - chr5_3:19429432-19429451 Msa0803940:intron 40.0%
TACTTGGTCAAATTGGAGGT+CGG + chr5_3:19429461-19429480 None:intergenic 40.0%
TTGTCAATTCCTGCACAAGA+GGG + chr5_3:19429516-19429535 None:intergenic 40.0%
!! TTAGTTCGGTGCTTGTATAG+GGG + chr5_3:19429567-19429586 None:intergenic 40.0%
!! GTTAGTTCGGTGCTTGTATA+GGG + chr5_3:19429568-19429587 None:intergenic 40.0%
GCCTAAATGTTTGTTTGCAG+GGG + chr5_3:19429623-19429642 None:intergenic 40.0%
! CTTTGTTTGCAAGTTTGGAG+AGG - chr5_3:19429642-19429661 Msa0803940:intron 40.0%
TTTGCAAGTTTGGAGAGGAA+GGG - chr5_3:19429647-19429666 Msa0803940:intron 40.0%
GGAGTTCCTGAGTTTAAACT+CGG + chr5_3:19429902-19429921 None:intergenic 40.0%
! AACTCCAACTCCTTACCTTT+TGG - chr5_3:19429916-19429935 Msa0803940:intron 40.0%
CATACCTTGACTTCAGATTC+TGG + chr5_3:19430110-19430129 None:intergenic 40.0%
! CAGAATCTGAAGTCAAGGTA+TGG - chr5_3:19430108-19430127 Msa0803940:intron 40.0%
ACTGTCAAAACTTCCAAGAG+TGG - chr5_3:19430417-19430436 Msa0803940:intron 40.0%
!!! CTTATAGTTTTGGCAAAGGG+AGG - chr5_3:19430702-19430721 Msa0803940:intron 40.0%
! CACTAACATTTTGAGCCCAT+AGG - chr5_3:19430841-19430860 Msa0803940:intron 40.0%
TTCTCCCATCAATTGCCTAT+GGG + chr5_3:19430859-19430878 None:intergenic 40.0%
TTGATGGGAGAACAGCTTTA+TGG - chr5_3:19430867-19430886 Msa0803940:intron 40.0%
! GTTGATTCTCTAGGTCTTGT+AGG + chr5_3:19430908-19430927 None:intergenic 40.0%
ACAAGACCTAGAGAATCAAC+TGG - chr5_3:19430908-19430927 Msa0803940:intron 40.0%
TGCTGCTAAGAGTTACCTTT+CGG + chr5_3:19431086-19431105 None:intergenic 40.0%
ACAGGGAAACATAATCCATC+AGG - chr5_3:19431178-19431197 Msa0803940:intron 40.0%
! GTGTGTTTTCTTGTTGAAGG+AGG + chr5_3:19431232-19431251 None:intergenic 40.0%
CGCATCTTACTTAATCTGCA+CGG - chr5_3:19431272-19431291 Msa0803940:intron 40.0%
! TGCGAGTCTCTTGTGATTTT+GGG + chr5_3:19431302-19431321 None:intergenic 40.0%
CAATTTCCATACGGTGTTCA+TGG - chr5_3:19431567-19431586 Msa0803940:CDS 40.0%
GTCTCACAATATTCTTGCTC+AGG + chr5_3:19431636-19431655 None:intergenic 40.0%
CAAGAATATTGTGAGACCTC+AGG - chr5_3:19431639-19431658 Msa0803940:CDS 40.0%
GAGGGAAGATTGTGATTCGA+AGG - chr5_3:19426663-19426682 Msa0803940:CDS 45.0%
! GGCAAGTCACTTTCTCAAAG+AGG - chr5_3:19426705-19426724 Msa0803940:CDS 45.0%
GTCCAACTTGTGCATCACAT+AGG + chr5_3:19426769-19426788 None:intergenic 45.0%
GTCAAGCACATGACCTGTTA+TGG + chr5_3:19427277-19427296 None:intergenic 45.0%
CAAGTGCACACAGTACAAGA+AGG + chr5_3:19428081-19428100 None:intergenic 45.0%
GAAGGGGGAGAAAACTAAGA+TGG - chr5_3:19428309-19428328 Msa0803940:intron 45.0%
! ACTCCAGTGGTGCTAATGAT+GGG + chr5_3:19428391-19428410 None:intergenic 45.0%
! AACTCCAGTGGTGCTAATGA+TGG + chr5_3:19428392-19428411 None:intergenic 45.0%
! TCCTTTTCTATAGGACCGGA+GGG + chr5_3:19428532-19428551 None:intergenic 45.0%
! ATCCTTTTCTATAGGACCGG+AGG + chr5_3:19428533-19428552 None:intergenic 45.0%
ACTTGGTCAAATTGGAGGTC+GGG + chr5_3:19429460-19429479 None:intergenic 45.0%
TGTCAATTCCTGCACAAGAG+GGG + chr5_3:19429515-19429534 None:intergenic 45.0%
GTTGTCAATTCCTGCACAAG+AGG + chr5_3:19429517-19429536 None:intergenic 45.0%
!! GGTTAGTTCGGTGCTTGTAT+AGG + chr5_3:19429569-19429588 None:intergenic 45.0%
GCCCCTGCAAACAAACATTT+AGG - chr5_3:19429619-19429638 Msa0803940:intron 45.0%
GTTTGCAAGTTTGGAGAGGA+AGG - chr5_3:19429646-19429665 Msa0803940:intron 45.0%
TGAGCCAAAAGGTAAGGAGT+TGG + chr5_3:19429923-19429942 None:intergenic 45.0%
! CTGGTTTGAGCCAAAAGGTA+AGG + chr5_3:19429929-19429948 None:intergenic 45.0%
!! CTCAACTGGTTTGAGCCAAA+AGG + chr5_3:19429934-19429953 None:intergenic 45.0%
TAGTACAATCACGCCACTCT+TGG + chr5_3:19430433-19430452 None:intergenic 45.0%
TTGAGCCCATAGGCAATTGA+TGG - chr5_3:19430851-19430870 Msa0803940:intron 45.0%
TGAGCCCATAGGCAATTGAT+GGG - chr5_3:19430852-19430871 Msa0803940:intron 45.0%
GTTCTCCCATCAATTGCCTA+TGG + chr5_3:19430860-19430879 None:intergenic 45.0%
! TTTTCATGCGAACTCCTTGG+AGG + chr5_3:19430941-19430960 None:intergenic 45.0%
!! CCTTTTTCATGCGAACTCCT+TGG + chr5_3:19430944-19430963 None:intergenic 45.0%
CCAAGGAGTTCGCATGAAAA+AGG - chr5_3:19430941-19430960 Msa0803940:intron 45.0%
AATCCAAGAGCTGAACCGAA+AGG - chr5_3:19431068-19431087 Msa0803940:intron 45.0%
TTACCTTTCGGTTCAGCTCT+TGG + chr5_3:19431074-19431093 None:intergenic 45.0%
! AGAGCTCCACATTTTCCTGA+TGG + chr5_3:19431196-19431215 None:intergenic 45.0%
! GCGAGTCTCTTGTGATTTTG+GGG + chr5_3:19431301-19431320 None:intergenic 45.0%
! GTGCGAGTCTCTTGTGATTT+TGG + chr5_3:19431303-19431322 None:intergenic 45.0%
ATAGCAGTGCTACATCACAG+CGG + chr5_3:19431428-19431447 None:intergenic 45.0%
AATGTCGTAGGTGTATGGCA+CGG - chr5_3:19431503-19431522 Msa0803940:CDS 45.0%
TTTCCATACGGTGTTCATGG+AGG - chr5_3:19431570-19431589 Msa0803940:CDS 45.0%
CACAATATTCTTGCTCAGGC+TGG + chr5_3:19431632-19431651 None:intergenic 45.0%
GGATCGACAACTGTACAAGC+AGG - chr5_3:19426684-19426703 Msa0803940:CDS 50.0%
ATCCCCATCATTAGCACCAC+TGG - chr5_3:19428385-19428404 Msa0803940:intron 50.0%
! CTCCAGTGGTGCTAATGATG+GGG + chr5_3:19428390-19428409 None:intergenic 50.0%
TAAGAGGACTGCAACTCCAG+TGG + chr5_3:19428404-19428423 None:intergenic 50.0%
ACCCTCCGGTCCTATAGAAA+AGG - chr5_3:19428528-19428547 Msa0803940:intron 50.0%
CTTGGTCAAATTGGAGGTCG+GGG + chr5_3:19429459-19429478 None:intergenic 50.0%
TCAATTCCTGCACAAGAGGG+GGG + chr5_3:19429513-19429532 None:intergenic 50.0%
GTCAATTCCTGCACAAGAGG+GGG + chr5_3:19429514-19429533 None:intergenic 50.0%
GTTTGTTTGCAGGGGCTGTT+TGG + chr5_3:19429615-19429634 None:intergenic 50.0%
AAGTTTGGAGAGGAAGGGAG+AGG - chr5_3:19429652-19429671 Msa0803940:intron 50.0%
CAACTGGAACTTAGCCTCCA+AGG - chr5_3:19430924-19430943 Msa0803940:intron 50.0%
TGCGACTCACAACACTGATG+TGG + chr5_3:19431325-19431344 None:intergenic 50.0%
CGTGTATCGCGAAACAGTAG+TGG - chr5_3:19431390-19431409 Msa0803940:intron 50.0%
TTTGGAGAGGAAGGGAGAGG+AGG - chr5_3:19429655-19429674 Msa0803940:intron 55.0%
TTGGAGAGGAAGGGAGAGGA+GGG - chr5_3:19429656-19429675 Msa0803940:intron 55.0%
CCTCCTCCATGAACACCGTA+TGG + chr5_3:19431576-19431595 None:intergenic 55.0%
CCATACGGTGTTCATGGAGG+AGG - chr5_3:19431573-19431592 Msa0803940:CDS 55.0%
TGTTGCACTTGCACTGCCTG+AGG + chr5_3:19431658-19431677 None:intergenic 55.0%
GGGGGGTCAAAGGACAACGA+TGG + chr5_3:19429496-19429515 None:intergenic 60.0%
CTGCACAAGAGGGGGGTCAA+AGG + chr5_3:19429506-19429525 None:intergenic 60.0%
CTTTGACCCCCCTCTTGTGC+AGG - chr5_3:19429504-19429523 Msa0803940:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 19426656 19431683 19426656 ID=Msa0803940;Name=Msa0803940
chr5_3 mRNA 19426656 19431683 19426656 ID=Msa0803940-mRNA-1;Parent=Msa0803940;Name=Msa0803940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|7|0|238
chr5_3 exon 19431502 19431683 19431502 ID=Msa0803940-mRNA-1:exon:7961;Parent=Msa0803940-mRNA-1
chr5_3 exon 19428215 19428290 19428215 ID=Msa0803940-mRNA-1:exon:7960;Parent=Msa0803940-mRNA-1
chr5_3 exon 19427569 19427630 19427569 ID=Msa0803940-mRNA-1:exon:7959;Parent=Msa0803940-mRNA-1
chr5_3 exon 19427377 19427476 19427377 ID=Msa0803940-mRNA-1:exon:7958;Parent=Msa0803940-mRNA-1
chr5_3 exon 19427250 19427291 19427250 ID=Msa0803940-mRNA-1:exon:7957;Parent=Msa0803940-mRNA-1
chr5_3 exon 19427074 19427157 19427074 ID=Msa0803940-mRNA-1:exon:7956;Parent=Msa0803940-mRNA-1
chr5_3 exon 19426656 19426826 19426656 ID=Msa0803940-mRNA-1:exon:7955;Parent=Msa0803940-mRNA-1
chr5_3 CDS 19431502 19431683 19431502 ID=Msa0803940-mRNA-1:cds;Parent=Msa0803940-mRNA-1
chr5_3 CDS 19428215 19428290 19428215 ID=Msa0803940-mRNA-1:cds;Parent=Msa0803940-mRNA-1
chr5_3 CDS 19427569 19427630 19427569 ID=Msa0803940-mRNA-1:cds;Parent=Msa0803940-mRNA-1
chr5_3 CDS 19427377 19427476 19427377 ID=Msa0803940-mRNA-1:cds;Parent=Msa0803940-mRNA-1
chr5_3 CDS 19427250 19427291 19427250 ID=Msa0803940-mRNA-1:cds;Parent=Msa0803940-mRNA-1
chr5_3 CDS 19427074 19427157 19427074 ID=Msa0803940-mRNA-1:cds;Parent=Msa0803940-mRNA-1
chr5_3 CDS 19426656 19426826 19426656 ID=Msa0803940-mRNA-1:cds;Parent=Msa0803940-mRNA-1
Gene Sequence

>Msa0803940

ATGGGAAGAGGGAAGATTGTGATTCGAAGGATCGACAACTGTACAAGCAGGCAAGTCACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCAAAAGAGTTAGCAATCCTATGTGATGCACAAGTTGGACTTGTTATATTCTCCAGCACTGGAAAGCTTTATGAATATGCAAATACCAGCATGAAATCAGTGATTGAGAGATATAACATTTGCAAGGAAGACCAACAAGTGACAAATCCAGAATCTGAAGTCAAGTTTTGGCAAAGGGAGGCAGAAATTTTAAGGCAGCAACTACAAAGTCTACAAGAAAACCATAGGCAATTGATGGGAGAACAGCTTTATGGTTTGAGTATCAGAAACCTACAAGACCTAGAGAATCAACTGGAACTTAGCCTCCAAGGAGTTCGCATGAAAAAGGAGAAAATTCTGACAGATGAAATCCAAGAGCTGAACCGAAAGGGAAACATAATCCATCAGGAAAATGTGGAGCTCTATAAGAAGGTAAACCTCCTTCAACAAGAAAACACACAACTACACAAAAAGGTGTATGGCACGGTTGATAATGACGCAACTGCAACAAGCAAAAACGCATTTGTTCAATTTCCATACGGTGTTCATGGAGGAGGAGAATATCAAACATTATTTCAACTTCAGTTATGCCAGCCTGAGCAAGAATATTGTGAGACCTCAGGCAGTGCAAGTGCAACAAAATGA
Protein sequence

>Msa0803940

MGRGKIVIRRIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYANTSMKSVIERYNICKEDQQVTNPESEVKFWQREAEILRQQLQSLQENHRQLMGEQLYGLSIRNLQDLENQLELSLQGVRMKKEKILTDEIQELNRKGNIIHQENVELYKKVNLLQQENTQLHKKVYGTVDNDATATSKNAFVQFPYGVHGGGEYQTLFQLQLCQPEQEYCETSGSASATK*