AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0835510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835510 MtrunA17_Chr5g0401451 98.730 630 8 0 1 630 1 630 0.0 1286
Msa0835510 MtrunA17_Chr4g0053841 70.279 609 161 9 28 630 1 595 0.0 854
Msa0835510 MtrunA17_Chr4g0010091 41.694 614 316 8 6 606 1 585 1.31e-166 489
Msa0835510 MtrunA17_Chr1g0195911 41.784 639 300 17 25 630 22 621 9.44e-158 467
Msa0835510 MtrunA17_Chr7g0268781 40.469 640 315 14 25 630 22 629 1.50e-153 456
Msa0835510 MtrunA17_Chr5g0432861 39.094 596 297 7 24 606 9 551 6.82e-146 435
Msa0835510 MtrunA17_Chr3g0108331 40.681 617 300 12 24 630 8 568 4.09e-145 432
Msa0835510 MtrunA17_Chr7g0245201 41.531 614 311 17 35 630 57 640 9.09e-143 429
Msa0835510 MtrunA17_Chr4g0050021 38.356 584 289 8 29 551 33 606 5.59e-132 402
Msa0835510 MtrunA17_Chr2g0279481 36.780 590 298 7 28 551 32 612 3.45e-126 388
Msa0835510 MtrunA17_Chr2g0303541 38.278 546 305 11 34 551 20 561 5.96e-126 386
Msa0835510 MtrunA17_Chr8g0382231 36.269 579 301 11 10 551 19 566 6.43e-121 372
Msa0835510 MtrunA17_Chr2g0285511 35.636 550 299 10 34 536 20 561 1.14e-114 355
Msa0835510 MtrunA17_Chr2g0320691 35.043 585 341 13 24 576 7 584 4.41e-114 355
Msa0835510 MtrunA17_Chr8g0374011 34.522 617 326 14 24 567 1 612 2.94e-113 353
Msa0835510 MtrunA17_Chr1g0207461 38.205 479 259 11 37 493 25 488 2.50e-103 327
Msa0835510 MtrunA17_Chr1g0181181 35.306 490 269 7 34 499 20 485 2.96e-103 324
Msa0835510 MtrunA17_Chr5g0401341 38.936 470 264 9 37 493 24 483 2.77e-102 324
Msa0835510 MtrunA17_Chr1g0150191 38.136 472 268 11 36 491 23 486 5.88e-101 320
Msa0835510 MtrunA17_Chr5g0412591 37.972 503 232 10 36 493 22 489 2.94e-100 318
Msa0835510 MtrunA17_Chr1g0199631 36.674 469 260 7 58 500 8 465 5.95e-98 311
Msa0835510 MtrunA17_Chr4g0076521 35.408 466 281 7 36 493 22 475 2.50e-93 300
Msa0835510 MtrunA17_Chr8g0367891 35.433 508 270 12 43 519 29 509 4.93e-88 285
Msa0835510 MtrunA17_Chr2g0290741 35.000 460 275 7 39 493 25 465 2.95e-85 278
Msa0835510 MtrunA17_Chr1g0191711 30.996 542 323 12 26 554 44 547 1.37e-80 265
Msa0835510 MtrunA17_Chr1g0206621 69.343 137 40 1 47 181 75 211 3.45e-61 203
Msa0835510 MtrunA17_Chr4g0003891 39.362 282 152 4 219 494 46 314 1.75e-58 203
Msa0835510 MtrunA17_Chr2g0332281 36.119 335 187 6 219 544 24 340 2.28e-55 194
Msa0835510 MtrunA17_Chr4g0023801 27.405 551 331 19 43 558 11 527 3.38e-49 180
Msa0835510 MtrunA17_Chr4g0037661 25.185 540 345 15 43 551 6 517 4.32e-41 157
Msa0835510 MtrunA17_Chr1g0163311 25.801 562 329 20 43 562 6 521 2.22e-38 149
Msa0835510 MtrunA17_Chr2g0280541 25.799 407 250 13 107 495 2 374 3.02e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835510 AT5G67385.1 67.851 619 180 8 16 630 1 604 0.0 826
Msa0835510 AT5G67385.4 67.770 574 166 8 61 630 1 559 0.0 759
Msa0835510 AT5G67385.5 67.770 574 166 8 61 630 1 559 0.0 759
Msa0835510 AT5G67385.2 67.770 574 166 8 61 630 1 559 0.0 759
Msa0835510 AT5G67385.3 67.770 574 166 8 61 630 1 559 0.0 759
Msa0835510 AT3G49970.1 54.795 584 185 15 52 630 6 515 0.0 583
Msa0835510 AT3G49970.2 54.795 584 185 15 52 630 6 515 0.0 583
Msa0835510 AT5G48800.1 45.017 602 275 12 20 606 22 582 5.93e-164 483
Msa0835510 AT2G30520.1 40.514 622 313 10 24 630 14 593 3.77e-151 449
Msa0835510 AT1G03010.1 40.678 649 308 15 24 630 21 634 6.92e-150 447
Msa0835510 AT1G03010.2 40.852 634 299 14 39 630 8 607 1.29e-147 441
Msa0835510 AT1G03010.3 40.852 634 299 14 39 630 34 633 1.66e-147 441
Msa0835510 AT2G47860.1 42.986 556 270 12 25 551 23 560 1.13e-143 431
Msa0835510 AT2G47860.3 41.278 579 270 13 25 551 23 583 2.20e-138 419
Msa0835510 AT3G08570.1 42.589 533 278 13 35 551 30 550 3.88e-134 406
Msa0835510 AT2G30520.2 39.761 586 296 10 60 630 2 545 1.19e-132 400
Msa0835510 AT2G30520.3 39.761 586 296 10 60 630 2 545 1.19e-132 400
Msa0835510 AT1G30440.1 35.993 589 323 12 25 566 10 591 3.40e-120 372
Msa0835510 AT3G08660.1 37.914 604 298 14 35 626 30 568 8.71e-119 365
Msa0835510 AT5G13600.1 38.855 489 269 8 34 500 20 500 3.59e-115 357
Msa0835510 AT5G64330.2 35.823 589 274 9 30 516 42 628 3.02e-113 354
Msa0835510 AT5G64330.1 33.888 661 311 11 30 569 42 697 6.56e-113 355
Msa0835510 AT5G03250.1 35.522 594 330 16 25 577 10 591 1.75e-109 342
Msa0835510 AT3G08660.3 37.587 572 281 13 67 626 1 508 2.33e-109 339
Msa0835510 AT2G47860.4 43.379 438 211 10 25 442 23 443 5.51e-109 335
Msa0835510 AT5G66560.1 36.229 541 272 11 34 508 13 546 1.68e-106 336
Msa0835510 AT3G44820.1 33.333 585 339 10 24 563 7 585 1.79e-105 333
Msa0835510 AT2G47860.6 41.215 461 211 11 25 442 23 466 1.11e-103 323
Msa0835510 AT5G64330.3 35.159 566 263 9 53 516 6 569 2.17e-103 326
Msa0835510 AT2G47860.5 40.789 456 227 10 125 551 1 442 1.63e-101 319
Msa0835510 AT2G47860.2 40.789 456 227 10 125 551 1 442 1.63e-101 319
Msa0835510 AT5G66560.3 36.711 523 258 11 52 508 2 517 2.58e-101 322
Msa0835510 AT5G66560.4 40.312 449 239 10 82 508 66 507 6.01e-101 321
Msa0835510 AT2G14820.2 36.810 489 276 10 39 507 26 501 1.31e-100 320
Msa0835510 AT2G14820.1 36.810 489 276 10 39 507 26 501 1.31e-100 320
Msa0835510 AT1G67900.5 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0835510 AT1G67900.1 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0835510 AT1G67900.3 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0835510 AT1G67900.6 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0835510 AT1G67900.2 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0835510 AT1G67900.4 38.095 525 251 11 37 508 23 526 3.33e-99 316
Msa0835510 AT3G50840.1 33.962 530 318 7 29 551 5 509 3.81e-98 311
Msa0835510 AT5G10250.2 33.391 578 313 13 23 562 33 576 5.02e-98 313
Msa0835510 AT5G10250.1 33.275 568 312 13 23 562 33 561 7.01e-96 307
Msa0835510 AT4G31820.1 35.477 482 275 11 39 508 26 483 3.33e-91 293
Msa0835510 AT4G37590.1 35.174 489 270 10 37 509 24 481 4.27e-88 286
Msa0835510 AT3G50840.2 34.137 498 296 7 61 551 1 473 1.11e-87 283
Msa0835510 AT3G50840.3 34.137 498 296 7 61 551 1 473 1.11e-87 283
Msa0835510 AT5G67440.3 35.714 462 283 9 37 493 24 476 2.58e-87 283
Msa0835510 AT5G67440.1 35.714 462 283 9 37 493 24 476 2.58e-87 283
Msa0835510 AT2G23050.1 33.824 476 269 10 37 506 24 459 3.09e-84 273
Msa0835510 AT5G47800.3 32.238 487 295 10 35 508 21 485 4.33e-83 272
Msa0835510 AT5G47800.1 32.238 487 295 10 35 508 21 485 4.33e-83 272
Msa0835510 AT5G47800.4 32.238 487 295 10 35 508 21 485 4.33e-83 272
Msa0835510 AT3G08660.2 39.474 418 219 10 35 446 30 419 1.35e-82 266
Msa0835510 AT5G67440.2 35.360 444 273 9 55 493 5 439 1.32e-81 267
Msa0835510 AT5G47800.2 32.238 487 295 10 35 508 134 598 1.83e-81 270
Msa0835510 AT4G31820.2 34.802 454 260 11 67 508 1 430 5.17e-80 263
Msa0835510 AT3G26490.1 32.685 514 287 12 37 504 23 523 1.07e-79 264
Msa0835510 AT3G26490.3 32.685 514 287 12 37 504 23 523 1.07e-79 264
Msa0835510 AT3G26490.4 32.685 514 287 12 37 504 23 523 1.07e-79 264
Msa0835510 AT5G03250.2 34.151 489 276 13 125 577 1 479 5.95e-76 251
Msa0835510 AT5G66560.2 33.122 474 245 10 34 442 13 479 1.81e-75 249
Msa0835510 AT3G26490.2 31.264 451 256 11 37 446 23 460 5.83e-60 209
Msa0835510 AT1G52770.1 36.624 314 165 5 193 494 13 304 2.21e-56 197
Msa0835510 AT2G23050.2 32.898 383 216 9 125 506 1 343 7.48e-56 194
Msa0835510 AT5G48130.1 28.390 472 287 12 34 491 33 467 4.33e-55 198
Msa0835510 AT3G15570.1 35.789 285 152 4 228 494 38 309 5.92e-51 183
Msa0835510 AT3G19850.1 27.669 459 276 10 65 491 29 463 1.27e-47 176
Msa0835510 AT1G50280.1 28.753 473 293 12 42 487 5 460 3.68e-46 171
Msa0835510 AT1G50280.2 29.977 427 261 10 82 487 18 427 1.88e-45 169
Msa0835510 AT3G22104.1 27.193 456 272 10 42 478 6 420 5.20e-40 154
Msa0835510 AT3G03510.1 27.696 408 239 9 94 496 8 364 4.13e-38 147
Msa0835510 AT5G17580.2 25.745 470 307 10 42 498 22 462 1.19e-37 147
Msa0835510 AT5G17580.1 25.745 470 307 10 42 498 7 447 1.68e-37 147
Msa0835510 AT3G22104.4 25.587 383 228 7 112 478 4 345 9.44e-28 117
Msa0835510 AT3G22104.2 25.587 383 228 7 112 478 4 345 9.44e-28 117
Msa0835510 AT3G22104.3 25.587 383 228 7 112 478 4 345 9.44e-28 117
Msa0835510 AT3G49900.2 31.795 195 112 7 30 213 55 239 1.30e-13 74.3
Msa0835510 AT3G49900.1 31.250 192 117 6 30 213 55 239 1.47e-13 73.9

Find 138 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCCATGTCACTTAAAT+TGG 0.099646 5_4:+8891667 None:intergenic
AGCCTTAGACATCTATTTAA+AGG 0.193457 5_4:-8892521 Msa0835510:intron
TCTTTCGAGCAGGATATATT+TGG 0.214701 5_4:-8893048 Msa0835510:intron
TAAAGGAAGATTCTCCAATT+TGG 0.228988 5_4:+8894405 None:intergenic
CTAGATAAGAAGACCTTCTT+TGG 0.230314 5_4:-8894972 Msa0835510:five_prime_UTR
GACATTGCATTCTTCTCTTT+TGG 0.249323 5_4:+8892949 None:intergenic
GGAAACCACTTTGTCTATAA+TGG 0.269644 5_4:-8892715 Msa0835510:CDS
CACCACCACCCTTTACAATA+TGG 0.282070 5_4:+8891005 None:intergenic
TCACAAGGTCAAATATTTCT+TGG 0.285885 5_4:-8894944 Msa0835510:five_prime_UTR
AAAACTTAAGAAAATGTTAA+AGG 0.291069 5_4:-8894792 Msa0835510:five_prime_UTR
GGTTTCCAATTTGAGATTCT+TGG 0.291899 5_4:+8892731 None:intergenic
ATTCCTTCGTATTCATTTAC+CGG 0.307235 5_4:-8892802 Msa0835510:CDS
TACCTTTAAATAGATGTCTA+AGG 0.307550 5_4:+8892519 None:intergenic
AGTTGCTTGCAGGCTTGATT+TGG 0.310330 5_4:-8892875 Msa0835510:CDS
TTTAGTTTGGTGTGAATAGA+AGG 0.321571 5_4:+8891482 None:intergenic
GTTGAACTCTCTGATGTTCC+CGG 0.323336 5_4:-8893956 Msa0835510:CDS
CTATAAGAACTCTTTGAAAA+AGG 0.323564 5_4:+8893513 None:intergenic
AATAGCAGAGAAAACAAAAT+TGG 0.326409 5_4:-8893705 Msa0835510:CDS
TTGATACAACAGTTGCTTGC+AGG 0.331579 5_4:-8892885 Msa0835510:CDS
ACCTGAATATACATTTAGTT+TGG 0.337497 5_4:+8891469 None:intergenic
AAAAGAATGGCAATGCAATT+AGG 0.350908 5_4:-8892850 Msa0835510:CDS
AATTACCAAGAATCTCAAAT+TGG 0.354888 5_4:-8892736 Msa0835510:CDS
AGTGATGTCAATGTCCAAAT+TGG 0.359152 5_4:-8894419 Msa0835510:CDS
CTCTCCATGTCACTTAAATT+GGG 0.374237 5_4:+8891668 None:intergenic
TTCTGTCATCTCAAGATATT+CGG 0.376339 5_4:+8893841 None:intergenic
CTAGAAGAAAGGTAATTCTA+TGG 0.387879 5_4:+8894991 None:intergenic
ATAAAATATAATTCTTGAGT+TGG 0.390624 5_4:-8890978 Msa0835510:three_prime_UTR
AAGGAATCTTCAAATATAAA+AGG 0.394765 5_4:-8894773 Msa0835510:five_prime_UTR
AAAGAAAGTTTGCAGCATAA+TGG 0.400198 5_4:-8891645 Msa0835510:CDS
AGATTATTCAGTTGGGAACT+TGG 0.401252 5_4:-8893819 Msa0835510:CDS
GGATTGCATTGCAACCTTGC+TGG 0.406623 5_4:-8890957 Msa0835510:three_prime_UTR
TATCCACACTTGGAGACTAA+TGG 0.409668 5_4:+8894025 None:intergenic
CCTTGTGAATTTCCCAAAGA+AGG 0.410567 5_4:+8894959 None:intergenic
AGAGAACTTGGACAACGGTT+TGG 0.419568 5_4:+8891561 None:intergenic
AACAGAGACCAGTTGTTGAT+TGG 0.421313 5_4:-8893568 Msa0835510:CDS
AGTTCGGTTTCAAAGAAACT+TGG 0.421844 5_4:-8891221 Msa0835510:CDS
AGTGGGAACCATATTGTAAA+GGG 0.423439 5_4:-8891013 Msa0835510:three_prime_UTR
GGGTTTAAACAGTTTGCTAT+TGG 0.424370 5_4:-8893476 Msa0835510:CDS
ATAGAAATTTATTTGATTTG+AGG 0.425801 5_4:-8894920 Msa0835510:five_prime_UTR
TTCAAATGCTTCTGCACCAC+CGG 0.425835 5_4:+8893937 None:intergenic
AAGAGTTCTTATAGCAATGA+TGG 0.430446 5_4:-8893504 Msa0835510:CDS
AAATGAAGACCTCAAATTAG+AGG 0.432193 5_4:-8891405 Msa0835510:CDS
ATCTTCCTTTACTTTACATA+AGG 0.434540 5_4:-8894393 Msa0835510:intron
TAGATAAGAAGACCTTCTTT+GGG 0.436473 5_4:-8894971 Msa0835510:five_prime_UTR
ATGACAGAAGATTATTCAGT+TGG 0.439432 5_4:-8893827 Msa0835510:CDS
CAATCAAAACCTACAGAAGA+TGG 0.439804 5_4:-8892553 Msa0835510:CDS
GAAGGTGAAGCATTTGCAAT+AGG 0.443580 5_4:+8891293 None:intergenic
GATGGTATTGTTACTGCTAA+AGG 0.444847 5_4:-8891173 Msa0835510:CDS
CAACGGTTTGGACTGGTAAC+CGG 0.447250 5_4:+8891573 None:intergenic
ACTTCACTACCTCTAATTTG+AGG 0.447292 5_4:+8891396 None:intergenic
ACAGAAATCTCTACGAGGTT+TGG 0.458956 5_4:-8893432 Msa0835510:intron
ATTTGGACATTGACATCACT+TGG 0.463936 5_4:+8894422 None:intergenic
AATTGCTTATATTGCTTGCA+AGG 0.465206 5_4:-8893663 Msa0835510:CDS
TCAGCCCACCAATCAACAAC+TGG 0.478880 5_4:+8893560 None:intergenic
AGACTTCGCGATGCAATGAA+TGG 0.480374 5_4:-8891524 Msa0835510:CDS
TGAGCGGGTTGGAAAGCTAA+TGG 0.480997 5_4:-8892656 Msa0835510:CDS
TAATGAGTCAGTTATAGTAT+TGG 0.491121 5_4:+8894742 None:intergenic
CACGTTATTCGATGTGGACA+CGG 0.493140 5_4:-8892776 Msa0835510:CDS
TTCCTTCGTATTCATTTACC+GGG 0.494561 5_4:-8892801 Msa0835510:CDS
GCTGTTCGTAATAGAGAACT+TGG 0.494662 5_4:+8891549 None:intergenic
AAGTGGGAACCATATTGTAA+AGG 0.496550 5_4:-8891014 Msa0835510:three_prime_UTR
CTATACATCCCATCTTCTGT+AGG 0.497214 5_4:+8892544 None:intergenic
ATACCATCCAAACGTGGAAA+AGG 0.497451 5_4:+8891188 None:intergenic
TGTGCATAGAGCATTAGAAT+AGG 0.499783 5_4:+8893452 None:intergenic
AAGGTCATGAAAATAAATAC+AGG 0.501104 5_4:-8891109 Msa0835510:three_prime_UTR
ATGTCATCACGATGTTAAAG+TGG 0.506615 5_4:-8891031 Msa0835510:three_prime_UTR
TCTCCAAGTGTGGATACATT+CGG 0.506959 5_4:-8894018 Msa0835510:CDS
CGAGCAGGATATATTTGGAA+AGG 0.507201 5_4:-8893043 Msa0835510:intron
CACTACCTTATGTAAAGTAA+AGG 0.508799 5_4:+8894388 None:intergenic
GCTTGATTTGGAGAAAAGAA+TGG 0.510077 5_4:-8892863 Msa0835510:CDS
ATATCTTTCTGTACTTGCCA+TGG 0.510837 5_4:-8894687 Msa0835510:exon
ACCAAACTAAATGTATATTC+AGG 0.522428 5_4:-8891470 Msa0835510:CDS
GGTAATTCTATGGAGGGTAG+AGG 0.522615 5_4:+8895001 None:intergenic
TCTTTCTGTACTTGCCATGG+TGG 0.522916 5_4:-8894684 Msa0835510:exon
GAGTGTCGTCGATTCTTGCT+TGG 0.523000 5_4:+8891140 None:intergenic
AGAGACCAGTTGTTGATTGG+TGG 0.523518 5_4:-8893565 Msa0835510:CDS
ACCCGCTCAATATCACTTTG+TGG 0.524055 5_4:+8892670 None:intergenic
GAGCAGGATATATTTGGAAA+GGG 0.526552 5_4:-8893042 Msa0835510:intron
AGTGTACCGTATGCTTAGAT+AGG 0.529667 5_4:+8890855 None:intergenic
TGACAGAAGATTATTCAGTT+GGG 0.532521 5_4:-8893826 Msa0835510:CDS
GGTCTTCTTATCTAGAAGAA+AGG 0.533076 5_4:+8894980 None:intergenic
ACTTGGACAACGGTTTGGAC+TGG 0.546671 5_4:+8891566 None:intergenic
TTTCTGCTTCATTTATAGTG+AGG 0.547211 5_4:-8894713 Msa0835510:five_prime_UTR
GTAATAGAGAACTTGGACAA+CGG 0.549721 5_4:+8891556 None:intergenic
TTTAACAGTTGATTTAAGTG+TGG 0.550369 5_4:+8891343 None:intergenic
TTTCCGAATGTATCCACACT+TGG 0.551161 5_4:+8894015 None:intergenic
AGAAGTGATAGCGGCTCTGA+CGG 0.551480 5_4:-8893617 Msa0835510:CDS
GTTCGGTTTCAAAGAAACTT+GGG 0.553017 5_4:-8891220 Msa0835510:CDS
AGGATATATTTGGAAAGGGA+AGG 0.553677 5_4:-8893038 Msa0835510:CDS
CCTTCTTTGGGAAATTCACA+AGG 0.558524 5_4:-8894959 Msa0835510:five_prime_UTR
CGACGACACTCTATTTCCTA+AGG 0.562175 5_4:-8891128 Msa0835510:exon
AACCATATTGTAAAGGGTGG+TGG 0.564776 5_4:-8891007 Msa0835510:three_prime_UTR
TTGCTGAAATAGCCACAGAC+AGG 0.565050 5_4:-8892624 Msa0835510:CDS
CAAAGTGATATTGAGCGGGT+TGG 0.565793 5_4:-8892667 Msa0835510:CDS
TTATTCAGTTGGGAACTTGG+TGG 0.567121 5_4:-8893816 Msa0835510:CDS
CATCACCATTATAGACAAAG+TGG 0.567160 5_4:+8892710 None:intergenic
ATTCTATGGAGGGTAGAGGA+AGG 0.573640 5_4:+8895005 None:intergenic
GAAGAAAGGTAATTCTATGG+AGG 0.574630 5_4:+8894994 None:intergenic
TATAAATTTCGAGATAAATG+TGG 0.578053 5_4:-8893891 Msa0835510:CDS
CACATGCAGCTCAAAACGAC+CGG 0.579581 5_4:-8891592 Msa0835510:CDS
TCGATGTGGACACGGTTCAA+AGG 0.579585 5_4:-8892768 Msa0835510:CDS
ACCACAAAGTGATATTGAGC+GGG 0.581240 5_4:-8892671 Msa0835510:CDS
CTTATAGCAATGATGGCTAG+AGG 0.584871 5_4:-8893497 Msa0835510:CDS
TAAATCAACTGTTAAATCAA+CGG 0.587019 5_4:-8891336 Msa0835510:CDS
TTATAGCAATGATGGCTAGA+GGG 0.589083 5_4:-8893496 Msa0835510:CDS
AATCAAAACCTACAGAAGAT+GGG 0.590751 5_4:-8892552 Msa0835510:CDS
CTAGCAGCAAAATTCTGCTA+CGG 0.592687 5_4:-8893914 Msa0835510:CDS
CCATGAAAAGAACAAGTGAC+TGG 0.597611 5_4:-8894589 Msa0835510:intron
AAGAAAGGTAATTCTATGGA+GGG 0.598694 5_4:+8894995 None:intergenic
TCAAATGCTTCTGCACCACC+GGG 0.605184 5_4:+8893938 None:intergenic
CACATCGAATAACGTGTCCC+CGG 0.613083 5_4:+8892783 None:intergenic
GGTAGAGGAAGGAATATGAG+TGG 0.613218 5_4:+8895016 None:intergenic
CGGGGACACGTTATTCGATG+TGG 0.614759 5_4:-8892782 Msa0835510:CDS
TCATCCCAATTTAAGTGACA+TGG 0.614869 5_4:-8891672 Msa0835510:CDS
TCAGTTATAGTATTGGCTCA+AGG 0.619930 5_4:+8894749 None:intergenic
TAAATCAACGGTAAAATCAA+CGG 0.622532 5_4:-8891324 Msa0835510:CDS
TCAGCAGAATGAGAATGAGA+AGG 0.624756 5_4:+8891275 None:intergenic
CATCGCTATGCTTAGATGTG+TGG 0.625147 5_4:-8893864 Msa0835510:CDS
GAGACCAGTTGTTGATTGGT+GGG 0.625912 5_4:-8893564 Msa0835510:CDS
GTCTAGACCACGATCCACCA+TGG 0.633131 5_4:+8894670 None:intergenic
CACCACAAAGTGATATTGAG+CGG 0.633715 5_4:-8892672 Msa0835510:CDS
AACTGATAAATTCCTGTCTG+TGG 0.634333 5_4:+8892612 None:intergenic
TGTCATCACGATGTTAAAGT+GGG 0.635930 5_4:-8891030 Msa0835510:three_prime_UTR
CGCTCAATATCACTTTGTGG+TGG 0.639852 5_4:+8892673 None:intergenic
TATCCATTAGTCTCCAAGTG+TGG 0.642032 5_4:-8894028 Msa0835510:CDS
GTATTGTTACTGCTAAAGGT+AGG 0.645750 5_4:-8891169 Msa0835510:CDS
GGGAACCATATTGTAAAGGG+TGG 0.650201 5_4:-8891010 Msa0835510:three_prime_UTR
GTACTTGCCATGGTGGATCG+TGG 0.650434 5_4:-8894677 Msa0835510:exon
TATATTGCGAGAAGTACAAG+TGG 0.662671 5_4:-8890921 Msa0835510:three_prime_UTR
AACATCAGAGAGTTCAACGA+AGG 0.692508 5_4:+8893961 None:intergenic
ATGAGAGTAGTACACCAGCA+AGG 0.699607 5_4:+8890943 None:intergenic
GAGTTCAACGAAGGACACGT+CGG 0.700242 5_4:+8893970 None:intergenic
GAACTCTCTGATGTTCCCGG+TGG 0.713406 5_4:-8893953 Msa0835510:CDS
TCATCTGTAAGAAGTGATAG+CGG 0.715394 5_4:-8893626 Msa0835510:CDS
TCCCCGGTAAATGAATACGA+AGG 0.717871 5_4:+8892799 None:intergenic
GTAACAATACCATCCAAACG+TGG 0.725647 5_4:+8891182 None:intergenic
TCCTTCGTATTCATTTACCG+GGG 0.730046 5_4:-8892800 Msa0835510:CDS
TATGCACAGAAATCTCTACG+AGG 0.833179 5_4:-8893437 Msa0835510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATTATTAAGAATTA+AGG + chr5_4:8892788-8892807 None:intergenic 10.0%
!!! ATAGAAATTTATTTGATTTG+AGG - chr5_4:8890938-8890957 Msa0835510:three_prime_UTR 15.0%
!! AAAACTTAAGAAAATGTTAA+AGG - chr5_4:8891066-8891085 Msa0835510:three_prime_UTR 15.0%
!! CAAAAAAATCTTTATATTGA+CGG - chr5_4:8891782-8891801 Msa0835510:intron 15.0%
!!! GTTAAAATTTTACAATTTTC+AGG - chr5_4:8894162-8894181 Msa0835510:intron 15.0%
!! ATAAAATATAATTCTTGAGT+TGG - chr5_4:8894880-8894899 Msa0835510:five_prime_UTR 15.0%
!! AAGGAATCTTCAAATATAAA+AGG - chr5_4:8891085-8891104 Msa0835510:three_prime_UTR 20.0%
!!! TAATTATAGGATTTTTTCTC+AGG - chr5_4:8891408-8891427 Msa0835510:CDS 20.0%
!! TTAATCAATCATAAAAACGT+AGG + chr5_4:8891757-8891776 None:intergenic 20.0%
!! TATAAATTTCGAGATAAATG+TGG - chr5_4:8891967-8891986 Msa0835510:intron 20.0%
!!! TTTCTATCTTTTTTTAGAGA+GGG + chr5_4:8892458-8892477 None:intergenic 20.0%
!!! TTTTCTATCTTTTTTTAGAG+AGG + chr5_4:8892459-8892478 None:intergenic 20.0%
!! TATAAAAGTCTAATCAATGT+TGG + chr5_4:8892717-8892736 None:intergenic 20.0%
!!! TAGTAGTTTTAAAATGGATT+TGG + chr5_4:8893525-8893544 None:intergenic 20.0%
!!! TCTAAGTAGTAGTTTTAAAA+TGG + chr5_4:8893531-8893550 None:intergenic 20.0%
!!! TCCTATCATTAAATAGATTT+TGG - chr5_4:8893673-8893692 Msa0835510:CDS 20.0%
!!! CAAATAAATGTATTGTTGTT+TGG - chr5_4:8893889-8893908 Msa0835510:CDS 20.0%
!! TTAACAAAATCAAAAGATCA+TGG - chr5_4:8893925-8893944 Msa0835510:CDS 20.0%
!! TAAATCAACTGTTAAATCAA+CGG - chr5_4:8894522-8894541 Msa0835510:intron 20.0%
!!! TCGAAAATCTTTTATAAGTT+CGG - chr5_4:8894621-8894640 Msa0835510:CDS 20.0%
!!! CATCTATTTTTTTTGTTTGT+GGG + chr5_4:8894970-8894989 None:intergenic 20.0%
!!! TCATCTATTTTTTTTGTTTG+TGG + chr5_4:8894971-8894990 None:intergenic 20.0%
!!! AAAAGTTTTAGGGAATAATG+AGG + chr5_4:8890985-8891004 None:intergenic 25.0%
! TAATGAGTCAGTTATAGTAT+TGG + chr5_4:8891119-8891138 None:intergenic 25.0%
!! TATTGTTTTCTACCTTTTGT+TGG - chr5_4:8891352-8891371 Msa0835510:CDS 25.0%
! AATTAAGCAATACAACTCAT+TGG + chr5_4:8891393-8891412 None:intergenic 25.0%
! GAGTTGTATTGCTTAATTAT+AGG - chr5_4:8891395-8891414 Msa0835510:CDS 25.0%
! ATCTTCCTTTACTTTACATA+AGG - chr5_4:8891465-8891484 Msa0835510:CDS 25.0%
!!! AATTTTGTTTTCTCTGCTAT+TGG + chr5_4:8892154-8892173 None:intergenic 25.0%
! AATAGCAGAGAAAACAAAAT+TGG - chr5_4:8892153-8892172 Msa0835510:intron 25.0%
!! CTATAAGAACTCTTTGAAAA+AGG + chr5_4:8892348-8892367 None:intergenic 25.0%
!!! TTCTATCTTTTTTTAGAGAG+GGG + chr5_4:8892457-8892476 None:intergenic 25.0%
! AATTACCAAGAATCTCAAAT+TGG - chr5_4:8893122-8893141 Msa0835510:intron 25.0%
! TACCTTTAAATAGATGTCTA+AGG + chr5_4:8893342-8893361 None:intergenic 25.0%
! ATCTATTTACATACAGAGAT+AGG + chr5_4:8893584-8893603 None:intergenic 25.0%
! GCCAAAATCTATTTAATGAT+AGG + chr5_4:8893677-8893696 None:intergenic 25.0%
! AGCTAAAAATCTTTATCCAA+TGG - chr5_4:8893713-8893732 Msa0835510:CDS 25.0%
!!! TGTTGTTTTTGGCAAAATTA+TGG - chr5_4:8893973-8893992 Msa0835510:CDS 25.0%
!!! GTTGTTTTTGGCAAAATTAT+GGG - chr5_4:8893974-8893993 Msa0835510:CDS 25.0%
! ACAATAATACATGTTTGGAA+TGG + chr5_4:8894060-8894079 None:intergenic 25.0%
! ACACTACAATAATACATGTT+TGG + chr5_4:8894065-8894084 None:intergenic 25.0%
! ACCAAACTAAATGTATATTC+AGG - chr5_4:8894388-8894407 Msa0835510:intron 25.0%
! ACCTGAATATACATTTAGTT+TGG + chr5_4:8894392-8894411 None:intergenic 25.0%
!! TTTAACAGTTGATTTAAGTG+TGG + chr5_4:8894518-8894537 None:intergenic 25.0%
! TAAATCAACGGTAAAATCAA+CGG - chr5_4:8894534-8894553 Msa0835510:intron 25.0%
!! GAACTTATAAAAGATTTTCG+AGG + chr5_4:8894622-8894641 None:intergenic 25.0%
!!! GTATTTATTTTCATGACCTT+AGG + chr5_4:8894749-8894768 None:intergenic 25.0%
! AAGGTCATGAAAATAAATAC+AGG - chr5_4:8894749-8894768 Msa0835510:five_prime_UTR 25.0%
AAGAAAGGTAATTCTATGGA+GGG + chr5_4:8890866-8890885 None:intergenic 30.0%
CTAGAAGAAAGGTAATTCTA+TGG + chr5_4:8890870-8890889 None:intergenic 30.0%
TAGATAAGAAGACCTTCTTT+GGG - chr5_4:8890887-8890906 Msa0835510:three_prime_UTR 30.0%
TCACAAGGTCAAATATTTCT+TGG - chr5_4:8890914-8890933 Msa0835510:three_prime_UTR 30.0%
TTTCTGCTTCATTTATAGTG+AGG - chr5_4:8891145-8891164 Msa0835510:CDS 30.0%
TAAAGGAAGATTCTCCAATT+TGG + chr5_4:8891456-8891475 None:intergenic 30.0%
CACTACCTTATGTAAAGTAA+AGG + chr5_4:8891473-8891492 None:intergenic 30.0%
TTGAAAGCAAGATGTATAAG+TGG - chr5_4:8891676-8891695 Msa0835510:CDS 30.0%
TTCTGTCATCTCAAGATATT+CGG + chr5_4:8892020-8892039 None:intergenic 30.0%
ATGACAGAAGATTATTCAGT+TGG - chr5_4:8892031-8892050 Msa0835510:intron 30.0%
TGACAGAAGATTATTCAGTT+GGG - chr5_4:8892032-8892051 Msa0835510:intron 30.0%
AATTGCTTATATTGCTTGCA+AGG - chr5_4:8892195-8892214 Msa0835510:intron 30.0%
AAGAGTTCTTATAGCAATGA+TGG - chr5_4:8892354-8892373 Msa0835510:intron 30.0%
GTAATTATATGTGTAAGTGC+AGG + chr5_4:8892555-8892574 None:intergenic 30.0%
!!! ATTTTTTCTTTCTTTCGAGC+AGG - chr5_4:8892800-8892819 Msa0835510:CDS 30.0%
! AAGACAAGAGCATGAAAAAA+GGG - chr5_4:8892857-8892876 Msa0835510:CDS 30.0%
!! CATTCTTCTCTTTTGGTAAT+AGG + chr5_4:8892905-8892924 None:intergenic 30.0%
AAAAGAATGGCAATGCAATT+AGG - chr5_4:8893008-8893027 Msa0835510:CDS 30.0%
ATTCCTTCGTATTCATTTAC+CGG - chr5_4:8893056-8893075 Msa0835510:intron 30.0%
AATCAAAACCTACAGAAGAT+GGG - chr5_4:8893306-8893325 Msa0835510:intron 30.0%
AGCCTTAGACATCTATTTAA+AGG - chr5_4:8893337-8893356 Msa0835510:intron 30.0%
TAATGATAGGAAAACACAAG+CGG + chr5_4:8893664-8893683 None:intergenic 30.0%
!! AAGCTCTAGAGAATTAGTTT+AGG + chr5_4:8893842-8893861 None:intergenic 30.0%
ACAAAATCAAAAGATCATGG+TGG - chr5_4:8893928-8893947 Msa0835510:CDS 30.0%
!!! TGTGAAGTTTGTGTTGTTTT+TGG - chr5_4:8893962-8893981 Msa0835510:CDS 30.0%
TGTTTGTATAGTAACACGTT+TGG + chr5_4:8894026-8894045 None:intergenic 30.0%
AAAGAAAGTTTGCAGCATAA+TGG - chr5_4:8894213-8894232 Msa0835510:intron 30.0%
!! TTTAGTTTGGTGTGAATAGA+AGG + chr5_4:8894379-8894398 None:intergenic 30.0%
AAATGAAGACCTCAAATTAG+AGG - chr5_4:8894453-8894472 Msa0835510:intron 30.0%
! TTTTCTCCTATCTAAGCATA+CGG - chr5_4:8894997-8895016 Msa0835510:five_prime_UTR 30.0%
GAAGAAAGGTAATTCTATGG+AGG + chr5_4:8890867-8890886 None:intergenic 35.0%
GGTCTTCTTATCTAGAAGAA+AGG + chr5_4:8890881-8890900 None:intergenic 35.0%
CTAGATAAGAAGACCTTCTT+TGG - chr5_4:8890886-8890905 Msa0835510:three_prime_UTR 35.0%
! AGCTGAGCTGAAAAGTTTTA+GGG + chr5_4:8890995-8891014 None:intergenic 35.0%
! TAGCTGAGCTGAAAAGTTTT+AGG + chr5_4:8890996-8891015 None:intergenic 35.0%
!! TCAGTTATAGTATTGGCTCA+AGG + chr5_4:8891112-8891131 None:intergenic 35.0%
ATATCTTTCTGTACTTGCCA+TGG - chr5_4:8891171-8891190 Msa0835510:CDS 35.0%
CAGTCACTAAATCCAACAAA+AGG + chr5_4:8891367-8891386 None:intergenic 35.0%
ATTTGGACATTGACATCACT+TGG + chr5_4:8891439-8891458 None:intergenic 35.0%
AGTGATGTCAATGTCCAAAT+TGG - chr5_4:8891439-8891458 Msa0835510:CDS 35.0%
AGATTATTCAGTTGGGAACT+TGG - chr5_4:8892039-8892058 Msa0835510:intron 35.0%
GTAGCACTAAAAACAATTGC+AGG - chr5_4:8892091-8892110 Msa0835510:intron 35.0%
! TTTTCTCTGCTATTGGAAGA+AGG + chr5_4:8892147-8892166 None:intergenic 35.0%
TCATCTGTAAGAAGTGATAG+CGG - chr5_4:8892232-8892251 Msa0835510:intron 35.0%
TTATAGCAATGATGGCTAGA+GGG - chr5_4:8892362-8892381 Msa0835510:intron 35.0%
!! GGGTTTAAACAGTTTGCTAT+TGG - chr5_4:8892382-8892401 Msa0835510:intron 35.0%
! TGTGCATAGAGCATTAGAAT+AGG + chr5_4:8892409-8892428 None:intergenic 35.0%
TGTTCATATCTGTGCTTCAT+AGG - chr5_4:8892610-8892629 Msa0835510:CDS 35.0%
! CTTCTTTTCTTTCGCAAACA+AGG + chr5_4:8892645-8892664 None:intergenic 35.0%
TCTTTCGAGCAGGATATATT+TGG - chr5_4:8892810-8892829 Msa0835510:CDS 35.0%
GAGCAGGATATATTTGGAAA+GGG - chr5_4:8892816-8892835 Msa0835510:CDS 35.0%
AGGATATATTTGGAAAGGGA+AGG - chr5_4:8892820-8892839 Msa0835510:CDS 35.0%
!!! CTTTTTTCATGCTCTTGTCT+TGG + chr5_4:8892858-8892877 None:intergenic 35.0%
! CAAGACAAGAGCATGAAAAA+AGG - chr5_4:8892856-8892875 Msa0835510:CDS 35.0%
! GACATTGCATTCTTCTCTTT+TGG + chr5_4:8892912-8892931 None:intergenic 35.0%
!! GCTTGATTTGGAGAAAAGAA+TGG - chr5_4:8892995-8893014 Msa0835510:CDS 35.0%
TTCCTTCGTATTCATTTACC+GGG - chr5_4:8893057-8893076 Msa0835510:intron 35.0%
! GGTTTCCAATTTGAGATTCT+TGG + chr5_4:8893130-8893149 None:intergenic 35.0%
GGAAACCACTTTGTCTATAA+TGG - chr5_4:8893143-8893162 Msa0835510:intron 35.0%
CATCACCATTATAGACAAAG+TGG + chr5_4:8893151-8893170 None:intergenic 35.0%
AACTGATAAATTCCTGTCTG+TGG + chr5_4:8893249-8893268 None:intergenic 35.0%
!!! TCTGTAGGTTTTGATTGTTC+AGG + chr5_4:8893302-8893321 None:intergenic 35.0%
CAATCAAAACCTACAGAAGA+TGG - chr5_4:8893305-8893324 Msa0835510:intron 35.0%
ATGCAATCACAGATCACAAT+CGG - chr5_4:8893467-8893486 Msa0835510:CDS 35.0%
GATCACAATCGGATGAAAAT+TGG - chr5_4:8893478-8893497 Msa0835510:CDS 35.0%
TCATCCCAATTTAAGTGACA+TGG - chr5_4:8894186-8894205 Msa0835510:intron 35.0%
! CTCTCCATGTCACTTAAATT+GGG + chr5_4:8894193-8894212 None:intergenic 35.0%
! TCTCTCCATGTCACTTAAAT+TGG + chr5_4:8894194-8894213 None:intergenic 35.0%
GTAATAGAGAACTTGGACAA+CGG + chr5_4:8894305-8894324 None:intergenic 35.0%
ACTTCACTACCTCTAATTTG+AGG + chr5_4:8894465-8894484 None:intergenic 35.0%
!! ATAAAAGATTTTCGAGGCAG+TGG + chr5_4:8894616-8894635 None:intergenic 35.0%
AGTTCGGTTTCAAAGAAACT+TGG - chr5_4:8894637-8894656 Msa0835510:CDS 35.0%
GTTCGGTTTCAAAGAAACTT+GGG - chr5_4:8894638-8894657 Msa0835510:CDS 35.0%
GATGGTATTGTTACTGCTAA+AGG - chr5_4:8894685-8894704 Msa0835510:exon 35.0%
GTATTGTTACTGCTAAAGGT+AGG - chr5_4:8894689-8894708 Msa0835510:exon 35.0%
ATGTCATCACGATGTTAAAG+TGG - chr5_4:8894827-8894846 Msa0835510:five_prime_UTR 35.0%
TGTCATCACGATGTTAAAGT+GGG - chr5_4:8894828-8894847 Msa0835510:five_prime_UTR 35.0%
AAGTGGGAACCATATTGTAA+AGG - chr5_4:8894844-8894863 Msa0835510:five_prime_UTR 35.0%
AGTGGGAACCATATTGTAAA+GGG - chr5_4:8894845-8894864 Msa0835510:five_prime_UTR 35.0%
! TATATTGCGAGAAGTACAAG+TGG - chr5_4:8894937-8894956 Msa0835510:five_prime_UTR 35.0%
CCTTGTGAATTTCCCAAAGA+AGG + chr5_4:8890902-8890921 None:intergenic 40.0%
! CCTTCTTTGGGAAATTCACA+AGG - chr5_4:8890899-8890918 Msa0835510:three_prime_UTR 40.0%
! CCAGTCACTTGTTCTTTTCA+TGG + chr5_4:8891272-8891291 None:intergenic 40.0%
CCATGAAAAGAACAAGTGAC+TGG - chr5_4:8891269-8891288 Msa0835510:CDS 40.0%
! TATCCATTAGTCTCCAAGTG+TGG - chr5_4:8891830-8891849 Msa0835510:intron 40.0%
TATCCACACTTGGAGACTAA+TGG + chr5_4:8891836-8891855 None:intergenic 40.0%
TCTCCAAGTGTGGATACATT+CGG - chr5_4:8891840-8891859 Msa0835510:intron 40.0%
TTTCCGAATGTATCCACACT+TGG + chr5_4:8891846-8891865 None:intergenic 40.0%
AACATCAGAGAGTTCAACGA+AGG + chr5_4:8891900-8891919 None:intergenic 40.0%
CTAGCAGCAAAATTCTGCTA+CGG - chr5_4:8891944-8891963 Msa0835510:intron 40.0%
TTATTCAGTTGGGAACTTGG+TGG - chr5_4:8892042-8892061 Msa0835510:intron 40.0%
AACAGAGACCAGTTGTTGAT+TGG - chr5_4:8892290-8892309 Msa0835510:intron 40.0%
CTTATAGCAATGATGGCTAG+AGG - chr5_4:8892361-8892380 Msa0835510:intron 40.0%
TATGCACAGAAATCTCTACG+AGG - chr5_4:8892421-8892440 Msa0835510:intron 40.0%
ACAGAAATCTCTACGAGGTT+TGG - chr5_4:8892426-8892445 Msa0835510:intron 40.0%
CGAGCAGGATATATTTGGAA+AGG - chr5_4:8892815-8892834 Msa0835510:CDS 40.0%
TTGATACAACAGTTGCTTGC+AGG - chr5_4:8892973-8892992 Msa0835510:CDS 40.0%
TCCTTCGTATTCATTTACCG+GGG - chr5_4:8893058-8893077 Msa0835510:intron 40.0%
CACCACAAAGTGATATTGAG+CGG - chr5_4:8893186-8893205 Msa0835510:intron 40.0%
ACCACAAAGTGATATTGAGC+GGG - chr5_4:8893187-8893206 Msa0835510:intron 40.0%
CTATACATCCCATCTTCTGT+AGG + chr5_4:8893317-8893336 None:intergenic 40.0%
!! CATAGAGGAAGTGTAGCTTT+TGG + chr5_4:8893438-8893457 None:intergenic 40.0%
CTCGACCATTGAATGAAGAT+CGG - chr5_4:8893637-8893656 Msa0835510:CDS 40.0%
GTAAGTGCAATGACTATGAG+AGG - chr5_4:8893745-8893764 Msa0835510:CDS 40.0%
GCAATGACTATGAGAGGATT+CGG - chr5_4:8893751-8893770 Msa0835510:CDS 40.0%
GCTGTTCGTAATAGAGAACT+TGG + chr5_4:8894312-8894331 None:intergenic 40.0%
! GAAGGTGAAGCATTTGCAAT+AGG + chr5_4:8894568-8894587 None:intergenic 40.0%
TCAGCAGAATGAGAATGAGA+AGG + chr5_4:8894586-8894605 None:intergenic 40.0%
ATACCATCCAAACGTGGAAA+AGG + chr5_4:8894673-8894692 None:intergenic 40.0%
GTAACAATACCATCCAAACG+TGG + chr5_4:8894679-8894698 None:intergenic 40.0%
AACCATATTGTAAAGGGTGG+TGG - chr5_4:8894851-8894870 Msa0835510:five_prime_UTR 40.0%
AGTGTACCGTATGCTTAGAT+AGG + chr5_4:8895006-8895025 None:intergenic 40.0%
ATTCTATGGAGGGTAGAGGA+AGG + chr5_4:8890856-8890875 None:intergenic 45.0%
GGTAATTCTATGGAGGGTAG+AGG + chr5_4:8890860-8890879 None:intergenic 45.0%
TCTTTCTGTACTTGCCATGG+TGG - chr5_4:8891174-8891193 Msa0835510:CDS 45.0%
GTTGAACTCTCTGATGTTCC+CGG - chr5_4:8891902-8891921 Msa0835510:intron 45.0%
TTCAAATGCTTCTGCACCAC+CGG + chr5_4:8891924-8891943 None:intergenic 45.0%
CATCGCTATGCTTAGATGTG+TGG - chr5_4:8891994-8892013 Msa0835510:intron 45.0%
! AGAGACCAGTTGTTGATTGG+TGG - chr5_4:8892293-8892312 Msa0835510:intron 45.0%
! GAGACCAGTTGTTGATTGGT+GGG - chr5_4:8892294-8892313 Msa0835510:intron 45.0%
GCAACAGACACAACTTGTGT+CGG + chr5_4:8892533-8892552 None:intergenic 45.0%
AGTTGCTTGCAGGCTTGATT+TGG - chr5_4:8892983-8893002 Msa0835510:CDS 45.0%
TCCCCGGTAAATGAATACGA+AGG + chr5_4:8893062-8893081 None:intergenic 45.0%
CACGTTATTCGATGTGGACA+CGG - chr5_4:8893082-8893101 Msa0835510:intron 45.0%
CGCTCAATATCACTTTGTGG+TGG + chr5_4:8893188-8893207 None:intergenic 45.0%
ACCCGCTCAATATCACTTTG+TGG + chr5_4:8893191-8893210 None:intergenic 45.0%
CAAAGTGATATTGAGCGGGT+TGG - chr5_4:8893191-8893210 Msa0835510:intron 45.0%
TTGCTGAAATAGCCACAGAC+AGG - chr5_4:8893234-8893253 Msa0835510:intron 45.0%
TTGCATGACTGCATGCATAG+AGG + chr5_4:8893453-8893472 None:intergenic 45.0%
CACTTACGAATCTCGACCAT+TGG + chr5_4:8893732-8893751 None:intergenic 45.0%
TGTTATGTTGTTCCCACGAG+AGG + chr5_4:8893780-8893799 None:intergenic 45.0%
AGAGAACTTGGACAACGGTT+TGG + chr5_4:8894300-8894319 None:intergenic 45.0%
AGACTTCGCGATGCAATGAA+TGG - chr5_4:8894334-8894353 Msa0835510:intron 45.0%
!! AAAGATTTTCGAGGCAGTGG+AGG + chr5_4:8894613-8894632 None:intergenic 45.0%
! GCTTTCTCCTTTTCCACGTT+TGG - chr5_4:8894663-8894682 Msa0835510:CDS 45.0%
! TCTCCTTTTCCACGTTTGGA+TGG - chr5_4:8894667-8894686 Msa0835510:CDS 45.0%
CGACGACACTCTATTTCCTA+AGG - chr5_4:8894730-8894749 Msa0835510:five_prime_UTR 45.0%
GGGAACCATATTGTAAAGGG+TGG - chr5_4:8894848-8894867 Msa0835510:five_prime_UTR 45.0%
CACCACCACCCTTTACAATA+TGG + chr5_4:8894856-8894875 None:intergenic 45.0%
ATGAGAGTAGTACACCAGCA+AGG + chr5_4:8894918-8894937 None:intergenic 45.0%
!!! TTTAAATAGATTTTTTTAAA+AGG + chr5_4:8893395-8893414 None:intergenic 5.0%
!!! TTTTAAAAAAATCTATTTAA+AGG - chr5_4:8893394-8893413 Msa0835510:intron 5.0%
GAGTTCAACGAAGGACACGT+CGG + chr5_4:8891891-8891910 None:intergenic 50.0%
TCAAATGCTTCTGCACCACC+GGG + chr5_4:8891923-8891942 None:intergenic 50.0%
!! AGAAGTGATAGCGGCTCTGA+CGG - chr5_4:8892241-8892260 Msa0835510:intron 50.0%
TCAGCCCACCAATCAACAAC+TGG + chr5_4:8892301-8892320 None:intergenic 50.0%
CACATCGAATAACGTGTCCC+CGG + chr5_4:8893078-8893097 None:intergenic 50.0%
TCGATGTGGACACGGTTCAA+AGG - chr5_4:8893090-8893109 Msa0835510:intron 50.0%
!! TGAGCGGGTTGGAAAGCTAA+TGG - chr5_4:8893202-8893221 Msa0835510:intron 50.0%
GCGGTCCGATCTTCATTCAA+TGG + chr5_4:8893645-8893664 None:intergenic 50.0%
AGGATTCGGATACCTCTCGT+GGG - chr5_4:8893765-8893784 Msa0835510:CDS 50.0%
CACATGCAGCTCAAAACGAC+CGG - chr5_4:8894266-8894285 Msa0835510:intron 50.0%
!! CAACGGTTTGGACTGGTAAC+CGG + chr5_4:8894288-8894307 None:intergenic 50.0%
! ACTTGGACAACGGTTTGGAC+TGG + chr5_4:8894295-8894314 None:intergenic 50.0%
!! GAGTGTCGTCGATTCTTGCT+TGG + chr5_4:8894721-8894740 None:intergenic 50.0%
GGATTGCATTGCAACCTTGC+TGG - chr5_4:8894901-8894920 Msa0835510:five_prime_UTR 50.0%
!! GTACTTGCCATGGTGGATCG+TGG - chr5_4:8891181-8891200 Msa0835510:CDS 55.0%
GTCTAGACCACGATCCACCA+TGG + chr5_4:8891191-8891210 None:intergenic 55.0%
GAACTCTCTGATGTTCCCGG+TGG - chr5_4:8891905-8891924 Msa0835510:intron 55.0%
CGGGGACACGTTATTCGATG+TGG - chr5_4:8893076-8893095 Msa0835510:intron 55.0%
GAGGATTCGGATACCTCTCG+TGG - chr5_4:8893764-8893783 Msa0835510:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 8890843 8895037 8890843 ID=Msa0835510;Name=Msa0835510
chr5_4 mRNA 8890843 8895037 8890843 ID=Msa0835510-mRNA-1;Parent=Msa0835510;Name=Msa0835510-mRNA-1;_AED=0.04;_eAED=0.04;_QI=347|1|1|1|1|1|5|287|630
chr5_4 exon 8890843 8891696 8890843 ID=Msa0835510-mRNA-1:exon:3934;Parent=Msa0835510-mRNA-1
chr5_4 exon 8892522 8893058 8892522 ID=Msa0835510-mRNA-1:exon:3933;Parent=Msa0835510-mRNA-1
chr5_4 exon 8893433 8894050 8893433 ID=Msa0835510-mRNA-1:exon:3932;Parent=Msa0835510-mRNA-1
chr5_4 exon 8894394 8894463 8894394 ID=Msa0835510-mRNA-1:exon:3931;Parent=Msa0835510-mRNA-1
chr5_4 exon 8894590 8895037 8894590 ID=Msa0835510-mRNA-1:exon:3930;Parent=Msa0835510-mRNA-1
chr5_4 five_prime_UTR 8894691 8895037 8894691 ID=Msa0835510-mRNA-1:five_prime_utr;Parent=Msa0835510-mRNA-1
chr5_4 CDS 8894590 8894690 8894590 ID=Msa0835510-mRNA-1:cds;Parent=Msa0835510-mRNA-1
chr5_4 CDS 8894394 8894463 8894394 ID=Msa0835510-mRNA-1:cds;Parent=Msa0835510-mRNA-1
chr5_4 CDS 8893433 8894050 8893433 ID=Msa0835510-mRNA-1:cds;Parent=Msa0835510-mRNA-1
chr5_4 CDS 8892522 8893058 8892522 ID=Msa0835510-mRNA-1:cds;Parent=Msa0835510-mRNA-1
chr5_4 CDS 8891130 8891696 8891130 ID=Msa0835510-mRNA-1:cds;Parent=Msa0835510-mRNA-1
chr5_4 three_prime_UTR 8890843 8891129 8890843 ID=Msa0835510-mRNA-1:three_prime_utr;Parent=Msa0835510-mRNA-1
Gene Sequence

>Msa0835510

ATGGTGGATCGTGGTCTAGACAAAACTACAACATCTGCTAGTGACTTGTCTCTGAAGAAGCAAGAGCTTCTATCTAGTGCCATGAAAAGAACAAGTGACTGGATTTTTTCTCAGGAGATTCCAAGTGATGTCAATGTCCAAATTGGAGAATCTTCCTTTACTTTACATAAGTATCCATTAGTCTCCAAGTGTGGATACATTCGGAAACTCGTCTCAGAATCTAATGACTCCGACGTGTCCTTCGTTGAACTCTCTGATGTTCCCGGTGGTGCAGAAGCATTTGAACTAGCAGCAAAATTCTGCTACGGTATAAATTTCGAGATAAATGTGGAAAACATCGCTATGCTTAGATGTGTGGCCGAATATCTTGAGATGACAGAAGATTATTCAGTTGGGAACTTGGTGGCAAGAACTGATGCATATTTGAATGATGTAGCACTAAAAACAATTGCAGGTTCTGTTTCAATCTTACATATTTCAGAAAGCCTTCTTCCAATAGCAGAGAAAACAAAATTGGTGAGCAAATGCATAGATGCAATTGCTTATATTGCTTGCAAGGAAAGTCAATTGTGTTCATCTGTAAGAAGTGATAGCGGCTCTGACGGAGTGATGTCATCTTCTGTGTCATCTCAACAGAGACCAGTTGTTGATTGGTGGGCTGAAGATCTAACTGTTCTTAGAATCGACCTTTTTCAAAGAGTTCTTATAGCAATGATGGCTAGAGGGTTTAAACAGTTTGCTATTGGTCCTATTCTAATGCTCTATGCACAGAAATCTCTACGAGGTTTGGATATATTTGGAAAGGGAAGGAAGAAGATTGAACCAAGACAAGAGCATGAAAAAAGGGTTATTTTAGAGACAATAGTGAGCCTATTACCAAAAGAGAAGAATGCAATGTCAGTAAGCTTTCTATCGATGCTGCTTCGTGCAGCAATATATCTTGATACAACAGTTGCTTGCAGGCTTGATTTGGAGAAAAGAATGGCAATGCAATTAGGACAAGCTGTCTTAGATGATCTTCTCATTCCTTCGTATTCATTTACCGGGGACACGTTATTCGATGTGGACACGGTTCAAAGGATCATGAATAATTACCAAGAATCTCAAATTGGAAACCACTTTGTCTATAATGGTGATGATGAATATTTTTCTCCACCACAAAGTGATATTGAGCGGGTTGGAAAGCTAATGGAAAACTATCTTGCTGAAATAGCCACAGACAGGAATTTATCAGTTGCAAAGTTCATCAGTCTAGCTGAATTGATTCCTGAACAATCAAAACCTACAGAAGATGGGATGTATAGAGCCTTAGACATCTATTTAAAGGCTCATCCCAATTTAAGTGACATGGAGAGAAAGAAAGTTTGCAGCATAATGGACTGTCAAAGACTATCACGAGAAGCATGTGCACATGCAGCTCAAAACGACCGGTTACCAGTCCAAACCGTTGTCCAAGTTCTCTATTACGAACAGCAAAGACTTCGCGATGCAATGAATGGAAGTGAAACTGCAGAATCACCTTCTATTCACACCAAACTAAATGTATATTCAGGTGATATTCAAGTTTCAAATGAACTTACAAGCTTACGAAGAGAAAATGAAGACCTCAAATTAGAGGTAGTGAAGTTGAAAATGAAACTAAAAGAGATCGAGATTTCCACACTTAAATCAACTGTTAAATCAACGGTAAAATCAACGGTTAATAGTCCTATTGCAAATGCTTCACCTTCTCATTCTCATTCTGCTGATAAGCCTCCACTGCCTCGAAAATCTTTTATAAGTTCGGTTTCAAAGAAACTTGGGAAGCTTTCTCCTTTTCCACGTTTGGATGGTATTGTTACTGCTAAAGGTAGGACAAAACCAAGCAAGAATCGACGACACTCTATTTCCTAA
Protein sequence

>Msa0835510

MVDRGLDKTTTSASDLSLKKQELLSSAMKRTSDWIFSQEIPSDVNVQIGESSFTLHKYPLVSKCGYIRKLVSESNDSDVSFVELSDVPGGAEAFELAAKFCYGINFEINVENIAMLRCVAEYLEMTEDYSVGNLVARTDAYLNDVALKTIAGSVSILHISESLLPIAEKTKLVSKCIDAIAYIACKESQLCSSVRSDSGSDGVMSSSVSSQQRPVVDWWAEDLTVLRIDLFQRVLIAMMARGFKQFAIGPILMLYAQKSLRGLDIFGKGRKKIEPRQEHEKRVILETIVSLLPKEKNAMSVSFLSMLLRAAIYLDTTVACRLDLEKRMAMQLGQAVLDDLLIPSYSFTGDTLFDVDTVQRIMNNYQESQIGNHFVYNGDDEYFSPPQSDIERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSKPTEDGMYRALDIYLKAHPNLSDMERKKVCSIMDCQRLSREACAHAAQNDRLPVQTVVQVLYYEQQRLRDAMNGSETAESPSIHTKLNVYSGDIQVSNELTSLRRENEDLKLEVVKLKMKLKEIEISTLKSTVKSTVKSTVNSPIANASPSHSHSADKPPLPRKSFISSVSKKLGKLSPFPRLDGIVTAKGRTKPSKNRRHSIS*