AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0458790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458790 MtrunA17_Chr3g0106291 96.764 309 9 1 1 308 1 309 0.0 619
Msa0458790 MtrunA17_Chr1g0154711 35.789 285 163 6 30 308 235 505 1.44e-45 161
Msa0458790 MtrunA17_Chr5g0403781 38.672 256 135 7 61 308 206 447 1.04e-44 157
Msa0458790 MtrunA17_Chr2g0278991 32.836 268 146 9 51 305 1041 1287 5.97e-27 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458790 AT2G30170.1 64.014 289 99 3 23 308 12 298 2.20e-131 375
Msa0458790 AT2G30170.3 67.873 221 70 1 89 308 1 221 1.54e-110 320
Msa0458790 AT2G30170.5 63.319 229 79 3 23 248 12 238 1.12e-96 286
Msa0458790 AT2G30170.6 69.744 195 58 1 55 248 9 203 9.62e-96 283
Msa0458790 AT2G30170.4 63.684 190 65 2 23 210 12 199 8.74e-80 242
Msa0458790 AT2G30170.2 67.089 158 51 1 152 308 1 158 4.93e-77 232
Msa0458790 AT2G30170.7 68.323 161 50 1 89 248 1 161 9.19e-76 230
Msa0458790 AT4G16580.1 40.945 254 131 5 61 308 221 461 7.79e-52 177
Msa0458790 AT5G66720.2 33.013 312 176 6 4 308 126 411 3.32e-49 169
Msa0458790 AT5G66720.1 33.758 314 174 7 4 308 126 414 1.47e-48 167
Msa0458790 AT4G33500.1 34.000 250 142 8 61 303 484 717 1.06e-31 125

Find 87 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATGTTGTACATAATATT+TGG 0.167472 3_3:+54853273 Msa0458790:three_prime_UTR
CAGAACTTAACCCTGTAATT+AGG 0.272580 3_3:+54849847 Msa0458790:CDS
CATTCATAACATATCTTCTA+TGG 0.276086 3_3:+54849776 Msa0458790:CDS
GCTGTTGCTGATGGTGTCTC+TGG 0.289126 3_3:+54850163 Msa0458790:CDS
ATTATTCCCACGTGAATTGA+TGG 0.323223 3_3:+54850600 Msa0458790:CDS
GAGTTAACTCACCTAATTAC+AGG 0.329775 3_3:-54849858 None:intergenic
CCATGGTGGAAGAAAGTTCT+TGG 0.345245 3_3:+54852880 Msa0458790:CDS
TTCTTTGTGAGCAACTATAA+TGG 0.354294 3_3:+54850130 Msa0458790:CDS
ATGATCCTCAGATTCTTATA+AGG 0.360349 3_3:+54850876 Msa0458790:CDS
CCATTGCATCAAGGTATGTT+TGG 0.361695 3_3:-54851334 None:intergenic
CTATGGATGAAAATGCTAAA+AGG 0.363453 3_3:+54849793 Msa0458790:CDS
TTCAATATTGAGAGCTGTAA+TGG 0.381901 3_3:+54849722 Msa0458790:CDS
TATTACTGTAATTGTTGGTC+AGG 0.384653 3_3:+54853011 Msa0458790:CDS
CTCTCAGAGCTCAGTTGGTA+TGG 0.396619 3_3:-54851305 None:intergenic
GGTAAGTAATGTGGAGTTGA+TGG 0.402055 3_3:+54852251 Msa0458790:intron
AACATGAGATATTACCATTA+CGG 0.404411 3_3:-54851142 None:intergenic
CAACGGTTAGAGCAATTTCA+TGG 0.406391 3_3:-54852326 None:intergenic
GATGATATTACTGTAATTGT+TGG 0.415329 3_3:+54853006 Msa0458790:CDS
AGCAAAGGCATTAGCTAACT+TGG 0.423045 3_3:+54852458 Msa0458790:intron
CTCTGGTGATCTTAACAATC+AGG 0.429033 3_3:-54853094 None:intergenic
TATGCATGAAGCTTCTTTCA+CGG 0.430988 3_3:-54853201 None:intergenic
TCTTGAAGGTTGAGAAAGGT+GGG 0.444907 3_3:+54850098 Msa0458790:intron
AACAAAGATGTTTCTGAGGC+TGG 0.460161 3_3:+54852351 Msa0458790:CDS
ATTGCCAATGTTGGTGATTG+TGG 0.466988 3_3:+54851107 Msa0458790:CDS
ACTTAAGGCAACTCCTTCTC+TGG 0.471321 3_3:-54853111 None:intergenic
GCCCTTGCCTCCAATGAATA+CGG 0.481855 3_3:-54852516 None:intergenic
GTGAAGCATCATTGCTATGC+TGG 0.481916 3_3:+54851064 Msa0458790:intron
TTGCTATGCTGGAAAAGAAT+GGG 0.485820 3_3:+54851075 Msa0458790:CDS
CATGGTGGAAGAAAGTTCTT+GGG 0.496365 3_3:+54852881 Msa0458790:CDS
ACAATTGTCATGGGATCTGA+TGG 0.498716 3_3:+54852282 Msa0458790:CDS
AGAGGGAGTTGAAGTTAAAG+TGG 0.503608 3_3:+54849685 Msa0458790:five_prime_UTR
TTAGTGCCACGGTATACTTA+AGG 0.503627 3_3:-54853126 None:intergenic
TTCTTGAAGGTTGAGAAAGG+TGG 0.504622 3_3:+54850097 Msa0458790:intron
GGAGTTATTGCTGTTGCTGA+TGG 0.506025 3_3:+54850154 Msa0458790:CDS
ATTGCTATGCTGGAAAAGAA+TGG 0.507571 3_3:+54851074 Msa0458790:CDS
GGATTACGAGTTATCCGTAA+TGG 0.510558 3_3:+54851128 Msa0458790:CDS
CTGTTGCTGATGGTGTCTCT+GGG 0.512852 3_3:+54850164 Msa0458790:CDS
TGATTCTCCGTATTCATTGG+AGG 0.517203 3_3:+54852509 Msa0458790:CDS
AATTCACGTGGGAATAATGA+AGG 0.517953 3_3:-54850595 None:intergenic
CTCCGTATTCATTGGAGGCA+AGG 0.518397 3_3:+54852514 Msa0458790:CDS
GCTTCACAGTTGGGCTGAAG+AGG 0.521493 3_3:+54850564 Msa0458790:intron
TCCGTATTCATTGGAGGCAA+GGG 0.535770 3_3:+54852515 Msa0458790:CDS
TATACCGTGGCACTAAACTT+TGG 0.536254 3_3:+54853133 Msa0458790:three_prime_UTR
TGTTTCTTGAAGGTTGAGAA+AGG 0.536545 3_3:+54850094 Msa0458790:intron
GTAATGTTCTTGTGGAGAAG+TGG 0.542397 3_3:-54851273 None:intergenic
CAACCCTCTCAGAGCTCAGT+TGG 0.543171 3_3:-54851310 None:intergenic
GAGTTGAAGTTAAAGTGGTA+AGG 0.543527 3_3:+54849690 Msa0458790:five_prime_UTR
GAAGTTAAAGTGGTAAGGAA+TGG 0.545965 3_3:+54849695 Msa0458790:exon
GTTCTTGGGATGAAGTTGAC+AGG 0.546334 3_3:+54852895 Msa0458790:CDS
TGCTACATTCTCTACAGGCT+CGG 0.546767 3_3:+54850910 Msa0458790:CDS
GGAAGGAGACACAATTGTCA+TGG 0.550201 3_3:+54852272 Msa0458790:CDS
TAAAGGCATTCAGCTTACAT+TGG 0.551771 3_3:-54853377 None:intergenic
AGAAACATCTTTGTTTGCAA+CGG 0.553090 3_3:-54852343 None:intergenic
CATGCTGCTACATTCTCTAC+AGG 0.556023 3_3:+54850905 Msa0458790:CDS
GTGTGAATGTGAAGAATAGA+GGG 0.560295 3_3:+54849668 Msa0458790:five_prime_UTR
CAGTCAAAGTAATGTTCTTG+TGG 0.563107 3_3:-54851281 None:intergenic
TCTCAGAGCTCAGTTGGTAT+GGG 0.569458 3_3:-54851304 None:intergenic
CTTGAAGGTTGAGAAAGGTG+GGG 0.569673 3_3:+54850099 Msa0458790:intron
GCAAAGCAAGAGAACTTCCA+TGG 0.570066 3_3:-54853179 None:intergenic
TGTGTGAATGTGAAGAATAG+AGG 0.570195 3_3:+54849667 Msa0458790:five_prime_UTR
TAAATGTTACCATTGCATCA+AGG 0.570236 3_3:-54851343 None:intergenic
AATCTAAAGATTGCCAATGT+TGG 0.572338 3_3:+54851098 Msa0458790:CDS
TACATAATATTTGGAACCAG+TGG 0.574189 3_3:+54853282 Msa0458790:three_prime_UTR
TTTGTGAGCAACTATAATGG+TGG 0.577961 3_3:+54850133 Msa0458790:CDS
AGTAATGTGGAGTTGATGGA+AGG 0.579559 3_3:+54852255 Msa0458790:CDS
TTTACTTTATAGGTCATCAG+AGG 0.586977 3_3:+54849949 Msa0458790:intron
CCAAACATACCTTGATGCAA+TGG 0.590788 3_3:+54851334 Msa0458790:CDS
TTCATTGGAGGCAAGGGCCA+AGG 0.591316 3_3:+54852521 Msa0458790:CDS
CTTGGCAAACAGTCATGCAA+TGG 0.591819 3_3:+54852476 Msa0458790:CDS
CCAAGAACTTTCTTCCACCA+TGG 0.595236 3_3:-54852880 None:intergenic
GAAGGAGACACAATTGTCAT+GGG 0.599986 3_3:+54852273 Msa0458790:CDS
ATTGTTAAGATCACCAGAGA+AGG 0.600071 3_3:+54853098 Msa0458790:three_prime_UTR
TAATCCACAATCACCAACAT+TGG 0.602187 3_3:-54851111 None:intergenic
AGTTAACTCACCTAATTACA+GGG 0.619427 3_3:-54849857 None:intergenic
CAACTGAGCTCTGAGAGGGT+TGG 0.619782 3_3:+54851311 Msa0458790:CDS
TGCAAACAAAGATGTTTCTG+AGG 0.619881 3_3:+54852347 Msa0458790:CDS
ATACCAACTGAGCTCTGAGA+GGG 0.631786 3_3:+54851307 Msa0458790:CDS
GCTTTCCTTATAAGAATCTG+AGG 0.633109 3_3:-54850881 None:intergenic
ATGACCAAAGTTTAGTGCCA+CGG 0.636017 3_3:-54853137 None:intergenic
TGGATGAAAATGCTAAAAGG+AGG 0.647076 3_3:+54849796 Msa0458790:CDS
CAATTGTCATGGGATCTGAT+GGG 0.648322 3_3:+54852283 Msa0458790:CDS
GCATTAGCCATCAATTCACG+TGG 0.652412 3_3:-54850607 None:intergenic
ATTATGCTGTAAAGAAAACA+AGG 0.653479 3_3:+54853070 Msa0458790:three_prime_UTR
CATACCAACTGAGCTCTGAG+AGG 0.655681 3_3:+54851306 Msa0458790:CDS
GAAGATATGTTATGAATGTG+TGG 0.660697 3_3:-54849771 None:intergenic
CATTAGCCATCAATTCACGT+GGG 0.738708 3_3:-54850606 None:intergenic
GAGTTGCCTTAAGTATACCG+TGG 0.746869 3_3:+54853120 Msa0458790:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGCTTAATACTTTTTTT+AGG + chr3_3:54849902-54849921 Msa0458790:intron 15.0%
!!! ATAATTACTATTACCTTTTT+TGG - chr3_3:54850010-54850029 None:intergenic 15.0%
!!! TTTTCAGTTATAAATTTAGA+TGG + chr3_3:54850476-54850495 Msa0458790:intron 15.0%
!! CATACACAAATTTATATATA+AGG - chr3_3:54851463-54851482 None:intergenic 15.0%
!!! CTATTTTATCAAATTATTAC+CGG - chr3_3:54851854-54851873 None:intergenic 15.0%
!!! TCTTAAATTTATTTTTTCCA+TGG + chr3_3:54853162-54853181 Msa0458790:three_prime_UTR 15.0%
!! TTAAATTGTTTATCCAAACA+AGG + chr3_3:54850398-54850417 Msa0458790:intron 20.0%
!!! TTATAATTTTGTACAAGATG+AGG + chr3_3:54850630-54850649 Msa0458790:CDS 20.0%
!! TTAAAAAGAATGAATGTAAC+TGG - chr3_3:54850721-54850740 None:intergenic 20.0%
!!! AAGTTTATCCTCTTTAATTT+AGG + chr3_3:54850942-54850961 Msa0458790:intron 20.0%
!!! TTTAATTTAGGTTGCTAATT+TGG + chr3_3:54850954-54850973 Msa0458790:intron 20.0%
!! GTAATATCTCATGTTATAAA+AGG + chr3_3:54851150-54851169 Msa0458790:intron 20.0%
!! GAAAATAATAACAAAGAAAC+TGG - chr3_3:54852015-54852034 None:intergenic 20.0%
!! AAAAGAAATACAAGAGTTTA+GGG - chr3_3:54852064-54852083 None:intergenic 20.0%
!! TAAAAGAAATACAAGAGTTT+AGG - chr3_3:54852065-54852084 None:intergenic 20.0%
!!! TATTTTATGATTGTCAGTTT+TGG + chr3_3:54852612-54852631 Msa0458790:intron 20.0%
!!! TTACTTTTTCTATTGTTAAC+AGG + chr3_3:54852973-54852992 Msa0458790:intron 20.0%
! CATTCATAACATATCTTCTA+TGG + chr3_3:54849776-54849795 Msa0458790:CDS 25.0%
! CTTACTCACTAATTCATTAT+TGG + chr3_3:54850194-54850213 Msa0458790:intron 25.0%
! ATATAAAAACTTACACCTTC+TGG - chr3_3:54850336-54850355 None:intergenic 25.0%
! ATTAGCAACCTAAATTAAAG+AGG - chr3_3:54850953-54850972 None:intergenic 25.0%
! AACATGAGATATTACCATTA+CGG - chr3_3:54851145-54851164 None:intergenic 25.0%
! GATGAGGAAAAAAACATATA+GGG - chr3_3:54851187-54851206 None:intergenic 25.0%
! CACAAATTTATATATAAGGC+AGG - chr3_3:54851459-54851478 None:intergenic 25.0%
! AAATAGTCAATGATGAGAAA+AGG + chr3_3:54851485-54851504 Msa0458790:intron 25.0%
! AATAGTCAATGATGAGAAAA+GGG + chr3_3:54851486-54851505 Msa0458790:intron 25.0%
!! ATTAGTTGTGGTGATTTTAA+TGG - chr3_3:54851707-54851726 None:intergenic 25.0%
!! CGATTTTGCATAGAATTTTT+AGG + chr3_3:54851949-54851968 Msa0458790:intron 25.0%
! CTAATGTACAACAATAACTA+TGG - chr3_3:54852037-54852056 None:intergenic 25.0%
! AAAGAAATACAAGAGTTTAG+GGG - chr3_3:54852063-54852082 None:intergenic 25.0%
! AATAGCTTAGTTTCTTGATT+TGG + chr3_3:54852086-54852105 Msa0458790:intron 25.0%
! ATAGCTTAGTTTCTTGATTT+GGG + chr3_3:54852087-54852106 Msa0458790:intron 25.0%
! CAATATGATAACACATAACT+TGG - chr3_3:54852119-54852138 None:intergenic 25.0%
! AACAGAAATACATTTGTATC+AGG - chr3_3:54852198-54852217 None:intergenic 25.0%
!! ACAAACTTATTTCTTTACCT+TGG - chr3_3:54852541-54852560 None:intergenic 25.0%
! TTGGAAAATGACTTCTTAAT+AGG + chr3_3:54852631-54852650 Msa0458790:intron 25.0%
! TGGAAAATGACTTCTTAATA+GGG + chr3_3:54852632-54852651 Msa0458790:intron 25.0%
!!! ATTAGTTTGCGTAAAATAGA+TGG + chr3_3:54852774-54852793 Msa0458790:intron 25.0%
! GATGATATTACTGTAATTGT+TGG + chr3_3:54853006-54853025 Msa0458790:CDS 25.0%
! ATTATGCTGTAAAGAAAACA+AGG + chr3_3:54853070-54853089 Msa0458790:three_prime_UTR 25.0%
! GAGATGTTGTACATAATATT+TGG + chr3_3:54853273-54853292 Msa0458790:three_prime_UTR 25.0%
TTCAATATTGAGAGCTGTAA+TGG + chr3_3:54849722-54849741 Msa0458790:CDS 30.0%
GAAGATATGTTATGAATGTG+TGG - chr3_3:54849774-54849793 None:intergenic 30.0%
CTATGGATGAAAATGCTAAA+AGG + chr3_3:54849793-54849812 Msa0458790:CDS 30.0%
AGTTAACTCACCTAATTACA+GGG - chr3_3:54849860-54849879 None:intergenic 30.0%
!! TTTTAGGTCTATGTTAGAGT+TGG + chr3_3:54849918-54849937 Msa0458790:intron 30.0%
TTTAGGTCTATGTTAGAGTT+GGG + chr3_3:54849919-54849938 Msa0458790:intron 30.0%
!!! GGGTTTTGGTTTTACTTTAT+AGG + chr3_3:54849939-54849958 Msa0458790:intron 30.0%
TTTACTTTATAGGTCATCAG+AGG + chr3_3:54849949-54849968 Msa0458790:intron 30.0%
!!! ACTATTACCTTTTTTGGATG+TGG - chr3_3:54850004-54850023 None:intergenic 30.0%
TTCTTTGTGAGCAACTATAA+TGG + chr3_3:54850130-54850149 Msa0458790:CDS 30.0%
CAACGAATAAATGATGTATC+TGG - chr3_3:54850279-54850298 None:intergenic 30.0%
! AATGATAGTAATGCCTTGTT+TGG - chr3_3:54850414-54850433 None:intergenic 30.0%
!! ACAAAGCAAGATTTTAGTCA+GGG - chr3_3:54850456-54850475 None:intergenic 30.0%
!! AACAAAGCAAGATTTTAGTC+AGG - chr3_3:54850457-54850476 None:intergenic 30.0%
! TAATTTTGTACAAGATGAGG+AGG + chr3_3:54850633-54850652 Msa0458790:CDS 30.0%
GAGCTGTAATTCAATAAGAA+TGG + chr3_3:54850777-54850796 Msa0458790:intron 30.0%
ATGGTTATATGCATGTTGTT+TGG + chr3_3:54850796-54850815 Msa0458790:intron 30.0%
!! CATGTTGATTCGTTGAATAT+TGG + chr3_3:54850834-54850853 Msa0458790:intron 30.0%
!! TGAATATTGGTTGATTTTGC+AGG + chr3_3:54850847-54850866 Msa0458790:intron 30.0%
ATGATCCTCAGATTCTTATA+AGG + chr3_3:54850876-54850895 Msa0458790:CDS 30.0%
AAATTGTTGAGGCTATAATG+TGG - chr3_3:54851029-54851048 None:intergenic 30.0%
AATCTAAAGATTGCCAATGT+TGG + chr3_3:54851098-54851117 Msa0458790:CDS 30.0%
CGATGAGGAAAAAAACATAT+AGG - chr3_3:54851188-54851207 None:intergenic 30.0%
TGTTGAGAACTTGAATTTCT+CGG + chr3_3:54851221-54851240 Msa0458790:intron 30.0%
TAAATGTTACCATTGCATCA+AGG - chr3_3:54851346-54851365 None:intergenic 30.0%
AAGTGACACTTATTATGAGA+CGG - chr3_3:54851626-54851645 None:intergenic 30.0%
! CTTAAGGAAATGATTAGTTG+TGG - chr3_3:54851719-54851738 None:intergenic 30.0%
! TTAACCCAAAGCCAATATTT+TGG - chr3_3:54851987-54852006 None:intergenic 30.0%
!! AAAATATTGGCTTTGGGTTA+AGG + chr3_3:54851986-54852005 Msa0458790:intron 30.0%
!! AAATATTGGCTTTGGGTTAA+GGG + chr3_3:54851987-54852006 Msa0458790:intron 30.0%
AAGAAATACAAGAGTTTAGG+GGG - chr3_3:54852062-54852081 None:intergenic 30.0%
AATGAGATTATATCCCCTTT+GGG - chr3_3:54852170-54852189 None:intergenic 30.0%
AAATGAGATTATATCCCCTT+TGG - chr3_3:54852171-54852190 None:intergenic 30.0%
AGAAAAACAGGTAAGTAATG+TGG + chr3_3:54852242-54852261 Msa0458790:intron 30.0%
! AGAAACATCTTTGTTTGCAA+CGG - chr3_3:54852346-54852365 None:intergenic 30.0%
AAACAGATCAACAAAGAAGA+AGG - chr3_3:54852383-54852402 None:intergenic 30.0%
!! TTTTGATTCTCCGTATTCAT+TGG + chr3_3:54852506-54852525 Msa0458790:CDS 30.0%
!!! CGACTCTTTTAAAACTTAGA+AGG - chr3_3:54852664-54852683 None:intergenic 30.0%
! TGCATTGTCAACAATTTTAC+AGG + chr3_3:54852846-54852865 Msa0458790:intron 30.0%
! GCATTGTCAACAATTTTACA+GGG + chr3_3:54852847-54852866 Msa0458790:intron 30.0%
! CTTTTTCTATTGTTAACAGG+TGG + chr3_3:54852976-54852995 Msa0458790:intron 30.0%
TATTACTGTAATTGTTGGTC+AGG + chr3_3:54853011-54853030 Msa0458790:CDS 30.0%
! TACATAATATTTGGAACCAG+TGG + chr3_3:54853282-54853301 Msa0458790:three_prime_UTR 30.0%
TGTGTGAATGTGAAGAATAG+AGG + chr3_3:54849667-54849686 Msa0458790:five_prime_UTR 35.0%
GTGTGAATGTGAAGAATAGA+GGG + chr3_3:54849668-54849687 Msa0458790:five_prime_UTR 35.0%
GAGTTGAAGTTAAAGTGGTA+AGG + chr3_3:54849690-54849709 Msa0458790:five_prime_UTR 35.0%
GAAGTTAAAGTGGTAAGGAA+TGG + chr3_3:54849695-54849714 Msa0458790:exon 35.0%
TGGATGAAAATGCTAAAAGG+AGG + chr3_3:54849796-54849815 Msa0458790:CDS 35.0%
CAGAACTTAACCCTGTAATT+AGG + chr3_3:54849847-54849866 Msa0458790:CDS 35.0%
GAGTTAACTCACCTAATTAC+AGG - chr3_3:54849861-54849880 None:intergenic 35.0%
! TCTATGTTAGAGTTGGGTTT+TGG + chr3_3:54849925-54849944 Msa0458790:intron 35.0%
! TCAGAGGTTTCATTTTCTGT+TGG + chr3_3:54849965-54849984 Msa0458790:CDS 35.0%
! CAGAGGTTTCATTTTCTGTT+GGG + chr3_3:54849966-54849985 Msa0458790:CDS 35.0%
!!! CCTTTTTTGGATGTGGAATA+AGG - chr3_3:54849997-54850016 None:intergenic 35.0%
CCTTATTCCACATCCAAAAA+AGG + chr3_3:54849994-54850013 Msa0458790:CDS 35.0%
TTGTTAGAGACTTAGAGTTG+TGG + chr3_3:54850071-54850090 Msa0458790:intron 35.0%
TGTTTCTTGAAGGTTGAGAA+AGG + chr3_3:54850094-54850113 Msa0458790:intron 35.0%
TTTGTGAGCAACTATAATGG+TGG + chr3_3:54850133-54850152 Msa0458790:CDS 35.0%
TGCTTATAATAGTGACCAGA+AGG + chr3_3:54850318-54850337 Msa0458790:intron 35.0%
TTTGTGTTATGCTTCACAGT+TGG + chr3_3:54850554-54850573 Msa0458790:intron 35.0%
TTGTGTTATGCTTCACAGTT+GGG + chr3_3:54850555-54850574 Msa0458790:intron 35.0%
AATTCACGTGGGAATAATGA+AGG - chr3_3:54850598-54850617 None:intergenic 35.0%
ATTATTCCCACGTGAATTGA+TGG + chr3_3:54850600-54850619 Msa0458790:CDS 35.0%
GTAATCAGTATCTGCGTTTA+GGG - chr3_3:54850666-54850685 None:intergenic 35.0%
GCTTTCCTTATAAGAATCTG+AGG - chr3_3:54850884-54850903 None:intergenic 35.0%
TCACAGACAAGAAATTGTTG+AGG - chr3_3:54851040-54851059 None:intergenic 35.0%
ATTGCTATGCTGGAAAAGAA+TGG + chr3_3:54851074-54851093 Msa0458790:CDS 35.0%
TTGCTATGCTGGAAAAGAAT+GGG + chr3_3:54851075-54851094 Msa0458790:CDS 35.0%
TAATCCACAATCACCAACAT+TGG - chr3_3:54851114-54851133 None:intergenic 35.0%
!! CATTCAAAGTGTTTTCGATG+AGG - chr3_3:54851203-54851222 None:intergenic 35.0%
CAGTCAAAGTAATGTTCTTG+TGG - chr3_3:54851284-54851303 None:intergenic 35.0%
ACAAATAGAGGAGTAGGAAA+AGG - chr3_3:54851405-54851424 None:intergenic 35.0%
AGTGAAGTGAAGACAAATAG+AGG - chr3_3:54851417-54851436 None:intergenic 35.0%
CAATCTGAGCAAGAAAGTTT+AGG - chr3_3:54851535-54851554 None:intergenic 35.0%
!!! TACCTGTGTCATTTTCATGT+CGG + chr3_3:54851891-54851910 Msa0458790:intron 35.0%
TTTCAGATTGAAGTTGTGTC+TGG - chr3_3:54851926-54851945 None:intergenic 35.0%
!! AATATTGGCTTTGGGTTAAG+GGG + chr3_3:54851988-54852007 Msa0458790:intron 35.0%
!! TAGTTTCTTGATTTGGGTGA+AGG + chr3_3:54852093-54852112 Msa0458790:intron 35.0%
ACTAACCTTGACAGAAAAAC+AGG + chr3_3:54852230-54852249 Msa0458790:intron 35.0%
!! ACTTACCTGTTTTTCTGTCA+AGG - chr3_3:54852238-54852257 None:intergenic 35.0%
! TGCAAACAAAGATGTTTCTG+AGG + chr3_3:54852347-54852366 Msa0458790:CDS 35.0%
CTTCTTTGTTGATCTGTTTG+AGG + chr3_3:54852384-54852403 Msa0458790:intron 35.0%
! GTTCATTTTGTTGCTAGCAA+AGG + chr3_3:54852443-54852462 Msa0458790:intron 35.0%
! GAACGTGTTTCAACTTCTTT+TGG - chr3_3:54852748-54852767 None:intergenic 35.0%
ATTGTTAAGATCACCAGAGA+AGG + chr3_3:54853098-54853117 Msa0458790:three_prime_UTR 35.0%
TATGCATGAAGCTTCTTTCA+CGG - chr3_3:54853204-54853223 None:intergenic 35.0%
!! TACATGTTTTTGCTTACCAC+TGG - chr3_3:54853301-54853320 None:intergenic 35.0%
AGAGGGAGTTGAAGTTAAAG+TGG + chr3_3:54849685-54849704 Msa0458790:five_prime_UTR 40.0%
AGAGTTGTGGTGTTTCTTGA+AGG + chr3_3:54850084-54850103 Msa0458790:intron 40.0%
TTCTTGAAGGTTGAGAAAGG+TGG + chr3_3:54850097-54850116 Msa0458790:intron 40.0%
TCTTGAAGGTTGAGAAAGGT+GGG + chr3_3:54850098-54850117 Msa0458790:intron 40.0%
CATTAGCCATCAATTCACGT+GGG - chr3_3:54850609-54850628 None:intergenic 40.0%
CGTAATCAGTATCTGCGTTT+AGG - chr3_3:54850667-54850686 None:intergenic 40.0%
!! ATTGCCAATGTTGGTGATTG+TGG + chr3_3:54851107-54851126 Msa0458790:CDS 40.0%
GGATTACGAGTTATCCGTAA+TGG + chr3_3:54851128-54851147 Msa0458790:CDS 40.0%
!! TTTCTCGGTGTTCTTCTTTC+AGG + chr3_3:54851236-54851255 Msa0458790:intron 40.0%
GTAATGTTCTTGTGGAGAAG+TGG - chr3_3:54851276-54851295 None:intergenic 40.0%
CCATTGCATCAAGGTATGTT+TGG - chr3_3:54851337-54851356 None:intergenic 40.0%
CCAAACATACCTTGATGCAA+TGG + chr3_3:54851334-54851353 Msa0458790:CDS 40.0%
GTGAAGACAAATAGAGGAGT+AGG - chr3_3:54851411-54851430 None:intergenic 40.0%
TCTGAGCAAGAAAGTTTAGG+TGG - chr3_3:54851532-54851551 None:intergenic 40.0%
ACACTTATTATGAGACGGAG+GGG - chr3_3:54851621-54851640 None:intergenic 40.0%
GACACTTATTATGAGACGGA+GGG - chr3_3:54851622-54851641 None:intergenic 40.0%
TGACACTTATTATGAGACGG+AGG - chr3_3:54851623-54851642 None:intergenic 40.0%
CTCAGACAAGTGTAGCATTT+GGG - chr3_3:54851754-54851773 None:intergenic 40.0%
TCTCAGACAAGTGTAGCATT+TGG - chr3_3:54851755-54851774 None:intergenic 40.0%
AATGCTACACTTGTCTGAGA+CGG + chr3_3:54851755-54851774 Msa0458790:intron 40.0%
TTATGTGTCAACGTCGTCTT+TGG - chr3_3:54851828-54851847 None:intergenic 40.0%
!! CCAGCCAAAATATTGGCTTT+GGG + chr3_3:54851980-54851999 Msa0458790:intron 40.0%
TACACAACACAACTTCCCAA+AGG + chr3_3:54852152-54852171 Msa0458790:intron 40.0%
ACACAACACAACTTCCCAAA+GGG + chr3_3:54852153-54852172 Msa0458790:intron 40.0%
GGTAAGTAATGTGGAGTTGA+TGG + chr3_3:54852251-54852270 Msa0458790:intron 40.0%
!! AGTAATGTGGAGTTGATGGA+AGG + chr3_3:54852255-54852274 Msa0458790:CDS 40.0%
GAAGGAGACACAATTGTCAT+GGG + chr3_3:54852273-54852292 Msa0458790:CDS 40.0%
ACAATTGTCATGGGATCTGA+TGG + chr3_3:54852282-54852301 Msa0458790:CDS 40.0%
CAATTGTCATGGGATCTGAT+GGG + chr3_3:54852283-54852302 Msa0458790:CDS 40.0%
CAACGGTTAGAGCAATTTCA+TGG - chr3_3:54852329-54852348 None:intergenic 40.0%
!! AACAAAGATGTTTCTGAGGC+TGG + chr3_3:54852351-54852370 Msa0458790:CDS 40.0%
!! AGCAAAGGCATTAGCTAACT+TGG + chr3_3:54852458-54852477 Msa0458790:intron 40.0%
TGATTCTCCGTATTCATTGG+AGG + chr3_3:54852509-54852528 Msa0458790:CDS 40.0%
! CATGGTGGAAGAAAGTTCTT+GGG + chr3_3:54852881-54852900 Msa0458790:CDS 40.0%
CTCTGGTGATCTTAACAATC+AGG - chr3_3:54853097-54853116 None:intergenic 40.0%
TTAGTGCCACGGTATACTTA+AGG - chr3_3:54853129-54853148 None:intergenic 40.0%
TATACCGTGGCACTAAACTT+TGG + chr3_3:54853133-54853152 Msa0458790:three_prime_UTR 40.0%
ATGACCAAAGTTTAGTGCCA+CGG - chr3_3:54853140-54853159 None:intergenic 40.0%
CTTGAAGGTTGAGAAAGGTG+GGG + chr3_3:54850099-54850118 Msa0458790:intron 45.0%
! GGAGTTATTGCTGTTGCTGA+TGG + chr3_3:54850154-54850173 Msa0458790:CDS 45.0%
GCATTAGCCATCAATTCACG+TGG - chr3_3:54850610-54850629 None:intergenic 45.0%
! CAGTATCTGCGTTTAGGGTA+CGG - chr3_3:54850661-54850680 None:intergenic 45.0%
CATGCTGCTACATTCTCTAC+AGG + chr3_3:54850905-54850924 Msa0458790:CDS 45.0%
TGCTACATTCTCTACAGGCT+CGG + chr3_3:54850910-54850929 Msa0458790:CDS 45.0%
! GTGAAGCATCATTGCTATGC+TGG + chr3_3:54851064-54851083 Msa0458790:intron 45.0%
! TCTCAGAGCTCAGTTGGTAT+GGG - chr3_3:54851307-54851326 None:intergenic 45.0%
!! ATACCAACTGAGCTCTGAGA+GGG + chr3_3:54851307-54851326 Msa0458790:CDS 45.0%
! GTGTAGCATCGGATTATGCT+GGG - chr3_3:54851590-54851609 None:intergenic 45.0%
! TGTGTAGCATCGGATTATGC+TGG - chr3_3:54851591-54851610 None:intergenic 45.0%
!! GGGGTATTGTTGTGTAGCAT+CGG - chr3_3:54851601-54851620 None:intergenic 45.0%
CACTTATTATGAGACGGAGG+GGG - chr3_3:54851620-54851639 None:intergenic 45.0%
TGGGTTGTGCACAGTTCTTA+AGG - chr3_3:54851735-54851754 None:intergenic 45.0%
CGACGTTGACACATAAACAC+CGG + chr3_3:54851832-54851851 Msa0458790:intron 45.0%
CACCGACATGAAAATGACAC+AGG - chr3_3:54851896-54851915 None:intergenic 45.0%
!!! CTGTGTCATTTTCATGTCGG+TGG + chr3_3:54851894-54851913 Msa0458790:intron 45.0%
!!! TGTCATTTTCATGTCGGTGG+CGG + chr3_3:54851897-54851916 Msa0458790:intron 45.0%
TCACGTGCCAGCCAAAATAT+TGG + chr3_3:54851973-54851992 Msa0458790:intron 45.0%
!! GCCAGCCAAAATATTGGCTT+TGG + chr3_3:54851979-54851998 Msa0458790:intron 45.0%
!!! CCCAAAGCCAATATTTTGGC+TGG - chr3_3:54851983-54852002 None:intergenic 45.0%
CACAACACAACTTCCCAAAG+GGG + chr3_3:54852154-54852173 Msa0458790:intron 45.0%
GGAAGGAGACACAATTGTCA+TGG + chr3_3:54852272-54852291 Msa0458790:CDS 45.0%
!! AGATGTTTCTGAGGCTGGTA+TGG + chr3_3:54852356-54852375 Msa0458790:intron 45.0%
GAGGAATTGCGATCAACTGT+AGG + chr3_3:54852403-54852422 Msa0458790:intron 45.0%
CTTGGCAAACAGTCATGCAA+TGG + chr3_3:54852476-54852495 Msa0458790:CDS 45.0%
TCCGTATTCATTGGAGGCAA+GGG + chr3_3:54852515-54852534 Msa0458790:CDS 45.0%
!!! TACAGGGTTTTGAAGCTCCA+TGG + chr3_3:54852863-54852882 Msa0458790:intron 45.0%
CCAAGAACTTTCTTCCACCA+TGG - chr3_3:54852883-54852902 None:intergenic 45.0%
! CCATGGTGGAAGAAAGTTCT+TGG + chr3_3:54852880-54852899 Msa0458790:CDS 45.0%
GTTCTTGGGATGAAGTTGAC+AGG + chr3_3:54852895-54852914 Msa0458790:CDS 45.0%
TGGGATGAAGTTGACAGGTA+TGG + chr3_3:54852900-54852919 Msa0458790:intron 45.0%
ACTTAAGGCAACTCCTTCTC+TGG - chr3_3:54853114-54853133 None:intergenic 45.0%
GAGTTGCCTTAAGTATACCG+TGG + chr3_3:54853120-54853139 Msa0458790:three_prime_UTR 45.0%
GCAAAGCAAGAGAACTTCCA+TGG - chr3_3:54853182-54853201 None:intergenic 45.0%
! CTGTTGCTGATGGTGTCTCT+GGG + chr3_3:54850164-54850183 Msa0458790:CDS 50.0%
! CTCTCAGAGCTCAGTTGGTA+TGG - chr3_3:54851308-54851327 None:intergenic 50.0%
!! CATACCAACTGAGCTCTGAG+AGG + chr3_3:54851306-54851325 Msa0458790:CDS 50.0%
! CTACACTTGTCTGAGACGGA+AGG + chr3_3:54851759-54851778 Msa0458790:intron 50.0%
CTCCGTATTCATTGGAGGCA+AGG + chr3_3:54852514-54852533 Msa0458790:CDS 50.0%
GCCCTTGCCTCCAATGAATA+CGG - chr3_3:54852519-54852538 None:intergenic 50.0%
!!! AGGGTTTTGAAGCTCCATGG+TGG + chr3_3:54852866-54852885 Msa0458790:intron 50.0%
! GCTGTTGCTGATGGTGTCTC+TGG + chr3_3:54850163-54850182 Msa0458790:CDS 55.0%
GCTTCACAGTTGGGCTGAAG+AGG + chr3_3:54850564-54850583 Msa0458790:intron 55.0%
CAACCCTCTCAGAGCTCAGT+TGG - chr3_3:54851313-54851332 None:intergenic 55.0%
!! CAACTGAGCTCTGAGAGGGT+TGG + chr3_3:54851311-54851330 Msa0458790:CDS 55.0%
TTCATTGGAGGCAAGGGCCA+AGG + chr3_3:54852521-54852540 Msa0458790:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 54849649 54853397 54849649 ID=Msa0458790;Name=Msa0458790
chr3_3 mRNA 54849649 54853397 54849649 ID=Msa0458790-mRNA-1;Parent=Msa0458790;Name=Msa0458790-mRNA-1;_AED=0.21;_eAED=0.21;_QI=65|1|1|1|1|1|11|350|308
chr3_3 exon 54849649 54849868 54849649 ID=Msa0458790-mRNA-1:exon:10845;Parent=Msa0458790-mRNA-1
chr3_3 exon 54849961 54850015 54849961 ID=Msa0458790-mRNA-1:exon:10846;Parent=Msa0458790-mRNA-1
chr3_3 exon 54850106 54850185 54850106 ID=Msa0458790-mRNA-1:exon:10847;Parent=Msa0458790-mRNA-1
chr3_3 exon 54850573 54850654 54850573 ID=Msa0458790-mRNA-1:exon:10848;Parent=Msa0458790-mRNA-1
chr3_3 exon 54850869 54850939 54850869 ID=Msa0458790-mRNA-1:exon:10849;Parent=Msa0458790-mRNA-1
chr3_3 exon 54851070 54851149 54851070 ID=Msa0458790-mRNA-1:exon:10850;Parent=Msa0458790-mRNA-1
chr3_3 exon 54851258 54851355 54851258 ID=Msa0458790-mRNA-1:exon:10851;Parent=Msa0458790-mRNA-1
chr3_3 exon 54852252 54852372 54852252 ID=Msa0458790-mRNA-1:exon:10852;Parent=Msa0458790-mRNA-1
chr3_3 exon 54852460 54852542 54852460 ID=Msa0458790-mRNA-1:exon:10853;Parent=Msa0458790-mRNA-1
chr3_3 exon 54852868 54852916 54852868 ID=Msa0458790-mRNA-1:exon:10854;Parent=Msa0458790-mRNA-1
chr3_3 exon 54852995 54853397 54852995 ID=Msa0458790-mRNA-1:exon:10855;Parent=Msa0458790-mRNA-1
chr3_3 five_prime_UTR 54849649 54849713 54849649 ID=Msa0458790-mRNA-1:five_prime_utr;Parent=Msa0458790-mRNA-1
chr3_3 CDS 54849714 54849868 54849714 ID=Msa0458790-mRNA-1:cds;Parent=Msa0458790-mRNA-1
chr3_3 CDS 54849961 54850015 54849961 ID=Msa0458790-mRNA-1:cds;Parent=Msa0458790-mRNA-1
chr3_3 CDS 54850106 54850185 54850106 ID=Msa0458790-mRNA-1:cds;Parent=Msa0458790-mRNA-1
chr3_3 CDS 54850573 54850654 54850573 ID=Msa0458790-mRNA-1:cds;Parent=Msa0458790-mRNA-1
chr3_3 CDS 54850869 54850939 54850869 ID=Msa0458790-mRNA-1:cds;Parent=Msa0458790-mRNA-1
chr3_3 CDS 54851070 54851149 54851070 ID=Msa0458790-mRNA-1:cds;Parent=Msa0458790-mRNA-1
chr3_3 CDS 54851258 54851355 54851258 ID=Msa0458790-mRNA-1:cds;Parent=Msa0458790-mRNA-1
chr3_3 CDS 54852252 54852372 54852252 ID=Msa0458790-mRNA-1:cds;Parent=Msa0458790-mRNA-1
chr3_3 CDS 54852460 54852542 54852460 ID=Msa0458790-mRNA-1:cds;Parent=Msa0458790-mRNA-1
chr3_3 CDS 54852868 54852916 54852868 ID=Msa0458790-mRNA-1:cds;Parent=Msa0458790-mRNA-1
chr3_3 CDS 54852995 54853047 54852995 ID=Msa0458790-mRNA-1:cds;Parent=Msa0458790-mRNA-1
chr3_3 three_prime_UTR 54853048 54853397 54853048 ID=Msa0458790-mRNA-1:three_prime_utr;Parent=Msa0458790-mRNA-1
Gene Sequence

>Msa0458790

ATGGCTATTTCAATATTGAGAGCTGTAATGGTGTCTAATTCTCATTGTCAATCTCAACCACACATTCATAACATATCTTCTATGGATGAAAATGCTAAAAGGAGGAAAAGAGTAGTTTTCTCTTCTCATTCTTCAGAACTTAACCCTGTAATTAGGTCATCAGAGGTTTCATTTTCTGTTGGGACTTGCCTTATTCCACATCCAAAAAAGGTTGAGAAAGGTGGGGAAGATGCTTTCTTTGTGAGCAACTATAATGGTGGAGTTATTGCTGTTGCTGATGGTGTCTCTGGTTGGGCTGAAGAGGATGTTGATCCTTCATTATTCCCACGTGAATTGATGGCTAATGCTTATAATTTTGTACAAGATGAGGAGGTGAATAATGATCCTCAGATTCTTATAAGGAAAGCACATGCTGCTACATTCTCTACAGGCTCGGCAACTGTCATCATTGCTATGCTGGAAAAGAATGGGAATCTAAAGATTGCCAATGTTGGTGATTGTGGATTACGAGTTATCCGTAATGGTCAAGTAATCTTTTCCACTTCTCCACAAGAACATTACTTTGACTGCCCATACCAACTGAGCTCTGAGAGGGTTGGCCAAACATACCTTGATGCAATGGTAAGTAATGTGGAGTTGATGGAAGGAGACACAATTGTCATGGGATCTGATGGGCTTTTTGATAATGTTTTTGACCATGAAATTGCTCTAACCGTTGCAAACAAAGATGTTTCTGAGGCTGCAAAGGCATTAGCTAACTTGGCAAACAGTCATGCAATGGATTCAAATTTTGATTCTCCGTATTCATTGGAGGCAAGGGCCAAGGGTTTTGAAGCTCCATGGTGGAAGAAAGTTCTTGGGATGAAGTTGACAGGTGGAAAGCTTGATGATATTACTGTAATTGTTGGTCAGGTTATAAATTCATGA

Protein sequence

>Msa0458790

MAISILRAVMVSNSHCQSQPHIHNISSMDENAKRRKRVVFSSHSSELNPVIRSSEVSFSVGTCLIPHPKKVEKGGEDAFFVSNYNGGVIAVADGVSGWAEEDVDPSLFPRELMANAYNFVQDEEVNNDPQILIRKAHAATFSTGSATVIIAMLEKNGNLKIANVGDCGLRVIRNGQVIFSTSPQEHYFDCPYQLSSERVGQTYLDAMVSNVELMEGDTIVMGSDGLFDNVFDHEIALTVANKDVSEAAKALANLANSHAMDSNFDSPYSLEARAKGFEAPWWKKVLGMKLTGGKLDDITVIVGQVINS*