Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848970 | XP_003614523.1 | 90.476 | 147 | 14 | 0 | 1 | 147 | 1 | 147 | 1.35e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848970 | sp|Q93VP2|HIP22_ARATH | 48.026 | 152 | 74 | 2 | 1 | 147 | 1 | 152 | 2.24e-46 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848970 | G7JZD6 | 90.476 | 147 | 14 | 0 | 1 | 147 | 1 | 147 | 6.46e-97 | 285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0729790 | Msa0848970 | 0.964269 | 4.088636e-123 | -8.615850e-47 |
| Msa0510050 | Msa0848970 | 0.810721 | 1.001468e-50 | -8.615850e-47 |
| Msa0848970 | Msa1007900 | 0.806196 | 9.251093e-50 | -8.615850e-47 |
| Msa0848970 | Msa1136690 | 0.807869 | 4.094886e-50 | -8.615850e-47 |
| Msa0848970 | Msa1211940 | 0.803594 | 3.235223e-49 | -8.615850e-47 |
| Msa0848970 | Msa1376880 | 0.811077 | 8.385465e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848970 | MtrunA17_Chr5g0422891 | 90.476 | 147 | 14 | 0 | 1 | 147 | 1 | 147 | 1.24e-100 | 285 |
| Msa0848970 | MtrunA17_Chr1g0160201 | 48.299 | 147 | 76 | 0 | 1 | 147 | 1 | 147 | 3.01e-50 | 157 |
| Msa0848970 | MtrunA17_Chr5g0407821 | 48.980 | 147 | 73 | 1 | 1 | 147 | 1 | 145 | 4.78e-47 | 149 |
| Msa0848970 | MtrunA17_Chr6g0448861 | 50.968 | 155 | 68 | 4 | 1 | 147 | 1 | 155 | 2.55e-45 | 145 |
| Msa0848970 | MtrunA17_Chr7g0251491 | 49.660 | 147 | 70 | 3 | 2 | 147 | 27 | 170 | 2.19e-43 | 140 |
| Msa0848970 | MtrunA17_Chr8g0382721 | 45.638 | 149 | 78 | 2 | 2 | 147 | 5 | 153 | 1.81e-39 | 130 |
| Msa0848970 | MtrunA17_Chr3g0124411 | 47.967 | 123 | 64 | 0 | 25 | 147 | 30 | 152 | 2.12e-39 | 130 |
| Msa0848970 | MtrunA17_Chr5g0405811 | 43.312 | 157 | 79 | 4 | 1 | 147 | 1 | 157 | 4.25e-36 | 122 |
| Msa0848970 | MtrunA17_Chr4g0036931 | 40.881 | 159 | 79 | 4 | 1 | 147 | 1 | 156 | 2.58e-34 | 117 |
| Msa0848970 | MtrunA17_Chr3g0145621 | 38.462 | 156 | 87 | 3 | 1 | 147 | 1 | 156 | 5.95e-34 | 116 |
| Msa0848970 | MtrunA17_Chr3g0115421 | 39.456 | 147 | 86 | 2 | 2 | 147 | 5 | 149 | 1.84e-30 | 107 |
| Msa0848970 | MtrunA17_Chr2g0325601 | 30.986 | 142 | 70 | 3 | 29 | 147 | 6 | 142 | 2.18e-16 | 71.2 |
| Msa0848970 | MtrunA17_Chr1g0189221 | 42.466 | 73 | 42 | 0 | 17 | 89 | 45 | 117 | 4.45e-15 | 68.6 |
| Msa0848970 | MtrunA17_Chr7g0218981 | 44.615 | 65 | 36 | 0 | 25 | 89 | 4 | 68 | 6.78e-15 | 66.6 |
| Msa0848970 | MtrunA17_Chr1g0198341 | 43.077 | 65 | 37 | 0 | 25 | 89 | 4 | 68 | 7.25e-14 | 62.8 |
| Msa0848970 | MtrunA17_Chr1g0191671 | 38.710 | 62 | 38 | 0 | 29 | 90 | 14 | 75 | 6.07e-12 | 62.0 |
| Msa0848970 | MtrunA17_Chr6g0460361 | 37.037 | 108 | 56 | 4 | 51 | 147 | 4 | 110 | 7.27e-12 | 58.5 |
| Msa0848970 | MtrunA17_Chr7g0272571 | 38.462 | 65 | 40 | 0 | 25 | 89 | 33 | 97 | 2.34e-11 | 60.1 |
| Msa0848970 | MtrunA17_Chr4g0065651 | 36.508 | 63 | 40 | 0 | 29 | 91 | 14 | 76 | 7.33e-11 | 58.9 |
| Msa0848970 | MtrunA17_Chr0c22g0493881 | 36.508 | 63 | 40 | 0 | 29 | 91 | 14 | 76 | 7.65e-11 | 58.9 |
| Msa0848970 | MtrunA17_Chr4g0065621 | 36.508 | 63 | 40 | 0 | 29 | 91 | 14 | 76 | 9.16e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848970 | AT1G22990.1 | 48.026 | 152 | 74 | 2 | 1 | 147 | 1 | 152 | 2.28e-47 | 150 |
| Msa0848970 | AT1G22990.2 | 47.297 | 148 | 76 | 2 | 1 | 147 | 1 | 147 | 6.32e-45 | 144 |
| Msa0848970 | AT1G71050.1 | 47.552 | 143 | 72 | 2 | 7 | 147 | 11 | 152 | 4.91e-42 | 137 |
| Msa0848970 | AT5G17450.1 | 46.309 | 149 | 78 | 2 | 1 | 147 | 1 | 149 | 6.61e-39 | 129 |
| Msa0848970 | AT4G38580.1 | 42.208 | 154 | 81 | 4 | 1 | 147 | 1 | 153 | 4.09e-35 | 119 |
| Msa0848970 | AT4G38580.2 | 42.208 | 154 | 81 | 4 | 1 | 147 | 1 | 153 | 4.09e-35 | 119 |
| Msa0848970 | AT5G66110.3 | 43.243 | 148 | 71 | 4 | 10 | 147 | 3 | 147 | 2.05e-34 | 117 |
| Msa0848970 | AT5G66110.1 | 43.243 | 148 | 71 | 4 | 10 | 147 | 3 | 147 | 2.05e-34 | 117 |
| Msa0848970 | AT4G35060.1 | 35.948 | 153 | 92 | 2 | 1 | 147 | 1 | 153 | 9.39e-33 | 113 |
| Msa0848970 | AT4G39700.1 | 47.143 | 140 | 57 | 3 | 20 | 147 | 24 | 158 | 1.33e-32 | 113 |
| Msa0848970 | AT5G66110.2 | 45.968 | 124 | 55 | 3 | 33 | 147 | 1 | 121 | 9.95e-32 | 110 |
| Msa0848970 | AT4G08570.1 | 38.514 | 148 | 87 | 3 | 2 | 147 | 5 | 150 | 1.42e-29 | 105 |
| Msa0848970 | AT5G17450.2 | 47.959 | 98 | 50 | 1 | 51 | 147 | 8 | 105 | 1.20e-28 | 101 |
| Msa0848970 | AT3G56891.1 | 33.974 | 156 | 71 | 6 | 22 | 147 | 13 | 166 | 3.82e-19 | 79.3 |
| Msa0848970 | AT3G56891.2 | 34.483 | 145 | 63 | 6 | 33 | 147 | 1 | 143 | 3.26e-18 | 76.3 |
| Msa0848970 | AT1G06330.1 | 47.143 | 70 | 36 | 1 | 26 | 95 | 3 | 71 | 7.20e-17 | 72.8 |
| Msa0848970 | AT2G18196.1 | 31.333 | 150 | 79 | 4 | 15 | 147 | 36 | 178 | 8.02e-17 | 73.6 |
| Msa0848970 | AT4G10465.1 | 34.000 | 150 | 84 | 6 | 9 | 147 | 38 | 183 | 1.18e-15 | 70.5 |
| Msa0848970 | AT1G66240.1 | 45.070 | 71 | 39 | 0 | 19 | 89 | 27 | 97 | 6.81e-15 | 66.6 |
| Msa0848970 | AT2G18196.2 | 32.576 | 132 | 65 | 4 | 33 | 147 | 1 | 125 | 6.59e-14 | 64.7 |
| Msa0848970 | AT3G56240.3 | 41.538 | 65 | 38 | 0 | 25 | 89 | 3 | 67 | 3.95e-12 | 59.7 |
| Msa0848970 | AT3G56240.1 | 41.538 | 65 | 38 | 0 | 25 | 89 | 3 | 67 | 3.95e-12 | 59.7 |
| Msa0848970 | AT5G27690.1 | 39.344 | 61 | 37 | 0 | 29 | 89 | 34 | 94 | 9.46e-12 | 61.6 |
| Msa0848970 | AT1G66240.2 | 46.552 | 58 | 31 | 0 | 33 | 90 | 1 | 58 | 1.53e-11 | 57.0 |
| Msa0848970 | AT1G23000.2 | 31.868 | 91 | 61 | 1 | 4 | 93 | 51 | 141 | 2.57e-11 | 60.5 |
Find 38 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAGACCGTTCATATC+AGG | 0.222233 | 5_4:+35169365 | Msa0848970:intron |
| GTGACTTATCCTTATGCTAT+TGG | 0.223846 | 5_4:+35171960 | Msa0848970:CDS |
| TGACTTATCCTTATGCTATT+GGG | 0.257197 | 5_4:+35171961 | Msa0848970:CDS |
| CGTTCATATCAGGGTGAAAA+TGG | 0.278887 | 5_4:+35169375 | Msa0848970:CDS |
| TGAATGAAGAAAACCTTCTT+AGG | 0.338448 | 5_4:-35169267 | None:intergenic |
| AGGATAAGTCACTAAATTGT+AGG | 0.359921 | 5_4:-35171949 | None:intergenic |
| CAACAAAGGGTAACCGTGAC+TGG | 0.368355 | 5_4:+35171852 | Msa0848970:CDS |
| TAGGGTCACCCACAGCTTGC+GGG | 0.407801 | 5_4:-35172025 | None:intergenic |
| ATCTTCAACTCTGGAGACTT+AGG | 0.420116 | 5_4:-35172044 | None:intergenic |
| TTCTTAGGAATACGTTTCTC+TGG | 0.437063 | 5_4:-35169252 | None:intergenic |
| CACTAAATTGTAGGGAACTA+AGG | 0.444703 | 5_4:-35171940 | None:intergenic |
| AGCGCCATCATCTTCAACTC+TGG | 0.446400 | 5_4:-35172053 | None:intergenic |
| CAGGGGTGTCCCGCAAGCTG+TGG | 0.453918 | 5_4:+35172016 | Msa0848970:CDS |
| AAGCACCTACTGGTTTCGTC+AGG | 0.454194 | 5_4:+35171997 | Msa0848970:CDS |
| AGAGAAACGTATTCCTAAGA+AGG | 0.475130 | 5_4:+35169254 | Msa0848970:CDS |
| AACGCTGTCGAAGACATTGA+TGG | 0.488639 | 5_4:+35169427 | Msa0848970:CDS |
| CATTTAGACCGTTCATATCA+GGG | 0.492434 | 5_4:+35169366 | Msa0848970:intron |
| TCTTCAACTCTGGAGACTTA+GGG | 0.500157 | 5_4:-35172043 | None:intergenic |
| TCATATGCCCCAATAGCATA+AGG | 0.506694 | 5_4:-35171969 | None:intergenic |
| TGCATCTATATTCCCAGTCA+CGG | 0.520958 | 5_4:-35171865 | None:intergenic |
| GTCTCCAGAGTTGAAGATGA+TGG | 0.530533 | 5_4:+35172049 | Msa0848970:CDS |
| TTAGGAATACGTTTCTCTGG+TGG | 0.534921 | 5_4:-35169249 | None:intergenic |
| GACTTATCCTTATGCTATTG+GGG | 0.536799 | 5_4:+35171962 | Msa0848970:CDS |
| TGTAAATCAAAAGCAACAAA+GGG | 0.536996 | 5_4:+35171839 | Msa0848970:CDS |
| AGGGGTGTCCCGCAAGCTGT+GGG | 0.539685 | 5_4:+35172017 | Msa0848970:CDS |
| GGATAAGTCACTAAATTGTA+GGG | 0.550485 | 5_4:-35171948 | None:intergenic |
| TTAGATGAAGTGAGGAGCAC+AGG | 0.553603 | 5_4:+35171897 | Msa0848970:CDS |
| ATGTAAATCAAAAGCAACAA+AGG | 0.557813 | 5_4:+35171838 | Msa0848970:CDS |
| TGGATTGTGAAGGTTGTGTA+AGG | 0.564177 | 5_4:+35169395 | Msa0848970:CDS |
| AACAAAGGGTAACCGTGACT+GGG | 0.572496 | 5_4:+35171853 | Msa0848970:CDS |
| TTAGGGTCACCCACAGCTTG+CGG | 0.572690 | 5_4:-35172026 | None:intergenic |
| AGCACCTACTGGTTTCGTCA+GGG | 0.572954 | 5_4:+35171998 | Msa0848970:CDS |
| TATGACATGAAAGCACCTAC+TGG | 0.577293 | 5_4:+35171987 | Msa0848970:CDS |
| TGGGAATATAGATGCAAATG+AGG | 0.582610 | 5_4:+35171872 | Msa0848970:CDS |
| GCACCTACTGGTTTCGTCAG+GGG | 0.609326 | 5_4:+35171999 | Msa0848970:CDS |
| ATGAGGTCTTAGATGAAGTG+AGG | 0.659617 | 5_4:+35171889 | Msa0848970:CDS |
| ACACCCCTGACGAAACCAGT+AGG | 0.666007 | 5_4:-35172002 | None:intergenic |
| AGGGTGAAAATGGATTGTGA+AGG | 0.746032 | 5_4:+35169385 | Msa0848970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTCAAATATTATTATTTTT+TGG | + | chr5_4:35169970-35169989 | Msa0848970:intron | 10.0% |
| !! | ACAAATAAAATAAAATTGAA+GGG | - | chr5_4:35170828-35170847 | None:intergenic | 10.0% |
| !! | AACAAATAAAATAAAATTGA+AGG | - | chr5_4:35170829-35170848 | None:intergenic | 10.0% |
| !!! | TTTTCTATCAAATAATTTAT+TGG | - | chr5_4:35171370-35171389 | None:intergenic | 10.0% |
| !! | ATATATATATGCATATATGT+AGG | + | chr5_4:35169471-35169490 | Msa0848970:intron | 15.0% |
| !!! | TTTTAGAAACAAATATCAAT+TGG | - | chr5_4:35169824-35169843 | None:intergenic | 15.0% |
| !! | ATATATACATACATATAAGT+GGG | - | chr5_4:35169847-35169866 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr5_4:35170694-35170713 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr5_4:35170693-35170712 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr5_4:35170472-35170491 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr5_4:35170603-35170622 | Msa0848970:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr5_4:35170693-35170712 | Msa0848970:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr5_4:35170694-35170713 | Msa0848970:intron | 15.0% |
| !!! | AGAAAATGATATTATTTTTC+AGG | + | chr5_4:35171801-35171820 | Msa0848970:intron | 15.0% |
| !! | TTAAATAATTCACACAATTG+AGG | + | chr5_4:35169298-35169317 | Msa0848970:intron | 20.0% |
| !!! | TGGATTATACCTAATTTTTT+GGG | + | chr5_4:35169539-35169558 | Msa0848970:intron | 20.0% |
| !!! | ATATTTTTAACACACTTCAT+GGG | - | chr5_4:35169581-35169600 | None:intergenic | 20.0% |
| !!! | TATATTTTTAACACACTTCA+TGG | - | chr5_4:35169582-35169601 | None:intergenic | 20.0% |
| !! | CATATATACATACATATAAG+TGG | - | chr5_4:35169848-35169867 | None:intergenic | 20.0% |
| !! | TTATAATTATGTTCATGACT+TGG | + | chr5_4:35170029-35170048 | Msa0848970:intron | 20.0% |
| !! | TAGTTATGCATTCATTATAA+AGG | + | chr5_4:35170149-35170168 | Msa0848970:intron | 20.0% |
| !! | TCCTTAAATGTATAACAAAT+AGG | + | chr5_4:35170187-35170206 | Msa0848970:intron | 20.0% |
| !!! | ACCTATTTGTTATACATTTA+AGG | - | chr5_4:35170191-35170210 | None:intergenic | 20.0% |
| !! | ATAGGTACATCATTAAAATT+TGG | + | chr5_4:35170205-35170224 | Msa0848970:intron | 20.0% |
| !! | TAGGTACATCATTAAAATTT+GGG | + | chr5_4:35170206-35170225 | Msa0848970:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr5_4:35170342-35170361 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr5_4:35170343-35170362 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr5_4:35170437-35170456 | None:intergenic | 20.0% |
| !!! | TACATGGTACTTTTTTTTTT+TGG | - | chr5_4:35170980-35170999 | None:intergenic | 20.0% |
| !! | GCATATGATTAAATATTCAT+AGG | - | chr5_4:35171059-35171078 | None:intergenic | 20.0% |
| !!! | TATCAAATAATTTATTGGCT+AGG | - | chr5_4:35171365-35171384 | None:intergenic | 20.0% |
| !! | TTTGTACAAAAAATAAACCA+AGG | + | chr5_4:35171551-35171570 | Msa0848970:intron | 20.0% |
| ! | AAGTGAAAAAATCTGAAAGT+AGG | - | chr5_4:35169218-35169237 | None:intergenic | 25.0% |
| ! | TATAATCCAGATGATTTAGT+GGG | - | chr5_4:35169528-35169547 | None:intergenic | 25.0% |
| !!! | CTGGATTATACCTAATTTTT+TGG | + | chr5_4:35169538-35169557 | Msa0848970:intron | 25.0% |
| !! | CAGTATATTTTGTTGAAACT+AGG | + | chr5_4:35169683-35169702 | Msa0848970:intron | 25.0% |
| ! | GATAAAATCCACTTAGAATA+TGG | + | chr5_4:35169725-35169744 | Msa0848970:intron | 25.0% |
| ! | TTAAACTCATGTGATACTTT+AGG | - | chr5_4:35169903-35169922 | None:intergenic | 25.0% |
| !! | TTTGCTTACTTGCAAATTTT+TGG | - | chr5_4:35170056-35170075 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr5_4:35170309-35170328 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr5_4:35170631-35170650 | Msa0848970:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr5_4:35170632-35170651 | Msa0848970:intron | 25.0% |
| !! | TTCTTGATTGTTACTTGATA+TGG | - | chr5_4:35170792-35170811 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTGGTAGTGGT+CGG | - | chr5_4:35170970-35170989 | None:intergenic | 25.0% |
| !!! | GTACTTTTTTTTTTTGGTAG+TGG | - | chr5_4:35170974-35170993 | None:intergenic | 25.0% |
| !!! | ATTTTAATTCCTTGTGTATC+AGG | - | chr5_4:35171007-35171026 | None:intergenic | 25.0% |
| ! | AATATTTAATCATATGCGTG+AGG | + | chr5_4:35171062-35171081 | Msa0848970:intron | 25.0% |
| !!! | GAAACATAAAAGTTGGTTTT+AGG | - | chr5_4:35171245-35171264 | None:intergenic | 25.0% |
| ! | ACACTTTAAGTATGAAAAAG+TGG | - | chr5_4:35171337-35171356 | None:intergenic | 25.0% |
| !!! | ATGATATTATTTTTCAGGTG+TGG | + | chr5_4:35171806-35171825 | Msa0848970:intron | 25.0% |
| ! | ATGTAAATCAAAAGCAACAA+AGG | + | chr5_4:35171838-35171857 | Msa0848970:CDS | 25.0% |
| ! | TGTAAATCAAAAGCAACAAA+GGG | + | chr5_4:35171839-35171858 | Msa0848970:CDS | 25.0% |
| TGAATGAAGAAAACCTTCTT+AGG | - | chr5_4:35169270-35169289 | None:intergenic | 30.0% | |
| GTATAATCCAGATGATTTAG+TGG | - | chr5_4:35169529-35169548 | None:intergenic | 30.0% | |
| TTCATGGGTAAAAGTTATAC+GGG | - | chr5_4:35169566-35169585 | None:intergenic | 30.0% | |
| CTTCATGGGTAAAAGTTATA+CGG | - | chr5_4:35169567-35169586 | None:intergenic | 30.0% | |
| ! | AACATTTTTCGTACACTTAG+AGG | + | chr5_4:35169622-35169641 | Msa0848970:intron | 30.0% |
| AGTGTTATAAGTAACACACT+AGG | + | chr5_4:35169645-35169664 | Msa0848970:intron | 30.0% | |
| TGCAATGTTAGTAGTCATAA+TGG | - | chr5_4:35169795-35169814 | None:intergenic | 30.0% | |
| ! | CTAGTTTATTCTGCATCTTT+TGG | - | chr5_4:35169939-35169958 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr5_4:35170725-35170744 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr5_4:35170724-35170743 | None:intergenic | 30.0% |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr5_4:35170310-35170329 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr5_4:35170569-35170588 | None:intergenic | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr5_4:35170724-35170743 | Msa0848970:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr5_4:35170725-35170744 | Msa0848970:intron | 30.0% |
| CAATCAAGAAATATTGTCCT+TGG | + | chr5_4:35170802-35170821 | Msa0848970:intron | 30.0% | |
| AAAATAAAATTGAAGGGCCA+AGG | - | chr5_4:35170822-35170841 | None:intergenic | 30.0% | |
| TCAATTGAGTTAAACTCATG+AGG | - | chr5_4:35170905-35170924 | None:intergenic | 30.0% | |
| TGAGTTTAACTCAATTGACA+TGG | + | chr5_4:35170907-35170926 | Msa0848970:intron | 30.0% | |
| !!! | TTTTTTTTTTGGTAGTGGTC+GGG | - | chr5_4:35170969-35170988 | None:intergenic | 30.0% |
| TCATAGGATTCAGTTAATTC+AGG | - | chr5_4:35171043-35171062 | None:intergenic | 30.0% | |
| !!! | AAGTTGGTTTTAGGTAATTC+TGG | - | chr5_4:35171236-35171255 | None:intergenic | 30.0% |
| TTACGGTGAAACATAAAAGT+TGG | - | chr5_4:35171252-35171271 | None:intergenic | 30.0% | |
| TAGCTTAAGGATGTTTCTTA+CGG | - | chr5_4:35171269-35171288 | None:intergenic | 30.0% | |
| ! | TTTTGTACAAATTGCATCGT+TGG | - | chr5_4:35171542-35171561 | None:intergenic | 30.0% |
| !! | TATTGAAATGCTGTTTCCTA+CGG | - | chr5_4:35171622-35171641 | None:intergenic | 30.0% |
| ATATGTACGAAATCAAGAGA+AGG | + | chr5_4:35171664-35171683 | Msa0848970:intron | 30.0% | |
| TATGTACGAAATCAAGAGAA+GGG | + | chr5_4:35171665-35171684 | Msa0848970:intron | 30.0% | |
| GGATAAGTCACTAAATTGTA+GGG | - | chr5_4:35171951-35171970 | None:intergenic | 30.0% | |
| AGGATAAGTCACTAAATTGT+AGG | - | chr5_4:35171952-35171971 | None:intergenic | 30.0% | |
| TGACTTATCCTTATGCTATT+GGG | + | chr5_4:35171961-35171980 | Msa0848970:CDS | 30.0% | |
| TTCTTAGGAATACGTTTCTC+TGG | - | chr5_4:35169255-35169274 | None:intergenic | 35.0% | |
| AGAGAAACGTATTCCTAAGA+AGG | + | chr5_4:35169254-35169273 | Msa0848970:CDS | 35.0% | |
| CATTTAGACCGTTCATATCA+GGG | + | chr5_4:35169366-35169385 | Msa0848970:intron | 35.0% | |
| ! | CATTTTCACCCTGATATGAA+CGG | - | chr5_4:35169377-35169396 | None:intergenic | 35.0% |
| ATGAAACCCACTAAATCATC+TGG | + | chr5_4:35169519-35169538 | Msa0848970:intron | 35.0% | |
| TATACGGGTCCCAAAAAATT+AGG | - | chr5_4:35169551-35169570 | None:intergenic | 35.0% | |
| CAAGTCAACCATATTCTAAG+TGG | - | chr5_4:35169736-35169755 | None:intergenic | 35.0% | |
| !! | CTTTAGGATATTCAATCCTG+AGG | - | chr5_4:35169887-35169906 | None:intergenic | 35.0% |
| ATTCGTTGTAGTGCATACAA+TGG | - | chr5_4:35169998-35170017 | None:intergenic | 35.0% | |
| TATGCACTACAACGAATAGA+GGG | + | chr5_4:35170001-35170020 | Msa0848970:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr5_4:35170709-35170728 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr5_4:35170709-35170728 | Msa0848970:intron | 35.0% | |
| TGCATAATATATGCAACGTC+CGG | + | chr5_4:35170934-35170953 | Msa0848970:intron | 35.0% | |
| AAAATAAACCAAGGCAGACA+AGG | + | chr5_4:35171560-35171579 | Msa0848970:intron | 35.0% | |
| AAAATATTCCTTGTCTGCCT+TGG | - | chr5_4:35171571-35171590 | None:intergenic | 35.0% | |
| TGGGAATATAGATGCAAATG+AGG | + | chr5_4:35171872-35171891 | Msa0848970:CDS | 35.0% | |
| CACTAAATTGTAGGGAACTA+AGG | - | chr5_4:35171943-35171962 | None:intergenic | 35.0% | |
| GTGACTTATCCTTATGCTAT+TGG | + | chr5_4:35171960-35171979 | Msa0848970:CDS | 35.0% | |
| GACTTATCCTTATGCTATTG+GGG | + | chr5_4:35171962-35171981 | Msa0848970:CDS | 35.0% | |
| TTAGGAATACGTTTCTCTGG+TGG | - | chr5_4:35169252-35169271 | None:intergenic | 40.0% | |
| CCTGATATGAACGGTCTAAA+TGG | - | chr5_4:35169368-35169387 | None:intergenic | 40.0% | |
| CCATTTAGACCGTTCATATC+AGG | + | chr5_4:35169365-35169384 | Msa0848970:intron | 40.0% | |
| CGTTCATATCAGGGTGAAAA+TGG | + | chr5_4:35169375-35169394 | Msa0848970:CDS | 40.0% | |
| !! | AGGGTGAAAATGGATTGTGA+AGG | + | chr5_4:35169385-35169404 | Msa0848970:CDS | 40.0% |
| TGGATTGTGAAGGTTGTGTA+AGG | + | chr5_4:35169395-35169414 | Msa0848970:CDS | 40.0% | |
| ACCTTAAACTCCATAAGGTG+TGG | - | chr5_4:35169759-35169778 | None:intergenic | 40.0% | |
| ACACCTTATGGAGTTTAAGG+TGG | + | chr5_4:35169758-35169777 | Msa0848970:intron | 40.0% | |
| GTATGCACTACAACGAATAG+AGG | + | chr5_4:35170000-35170019 | Msa0848970:intron | 40.0% | |
| GCATAATATATGCAACGTCC+GGG | + | chr5_4:35170935-35170954 | Msa0848970:intron | 40.0% | |
| CATAATATATGCAACGTCCG+GGG | + | chr5_4:35170936-35170955 | Msa0848970:intron | 40.0% | |
| ! | TTGTGTATCAGGAGAGTACA+TGG | - | chr5_4:35170996-35171015 | None:intergenic | 40.0% |
| ATGTACTCTCCTGATACACA+AGG | + | chr5_4:35170995-35171014 | Msa0848970:intron | 40.0% | |
| CCATGAAGGTTAGTAGCTTA+AGG | - | chr5_4:35171282-35171301 | None:intergenic | 40.0% | |
| CCTTAAGCTACTAACCTTCA+TGG | + | chr5_4:35171279-35171298 | Msa0848970:intron | 40.0% | |
| AAGCTACTAACCTTCATGGT+AGG | + | chr5_4:35171283-35171302 | Msa0848970:intron | 40.0% | |
| TACGTTTCTACCTACCATGA+AGG | - | chr5_4:35171296-35171315 | None:intergenic | 40.0% | |
| GACTTGCAGTTGTACGTTAA+AGG | + | chr5_4:35171480-35171499 | Msa0848970:intron | 40.0% | |
| AATTGCAACTCCAAAACCGT+AGG | + | chr5_4:35171603-35171622 | Msa0848970:intron | 40.0% | |
| !!! | AATGCTGTTTCCTACGGTTT+TGG | - | chr5_4:35171616-35171635 | None:intergenic | 40.0% |
| CGAAATCAAGAGAAGGGAAA+AGG | + | chr5_4:35171671-35171690 | Msa0848970:intron | 40.0% | |
| TGCATCTATATTCCCAGTCA+CGG | - | chr5_4:35171868-35171887 | None:intergenic | 40.0% | |
| ATGAGGTCTTAGATGAAGTG+AGG | + | chr5_4:35171889-35171908 | Msa0848970:CDS | 40.0% | |
| CAGGAAAAACAGCTGATATG+TGG | + | chr5_4:35171916-35171935 | Msa0848970:CDS | 40.0% | |
| TCATATGCCCCAATAGCATA+AGG | - | chr5_4:35171972-35171991 | None:intergenic | 40.0% | |
| !! | TATGACATGAAAGCACCTAC+TGG | + | chr5_4:35171987-35172006 | Msa0848970:CDS | 40.0% |
| ! | TCTTCAACTCTGGAGACTTA+GGG | - | chr5_4:35172046-35172065 | None:intergenic | 40.0% |
| ! | ATCTTCAACTCTGGAGACTT+AGG | - | chr5_4:35172047-35172066 | None:intergenic | 40.0% |
| AACGCTGTCGAAGACATTGA+TGG | + | chr5_4:35169427-35169446 | Msa0848970:CDS | 45.0% | |
| GCCACACCTTATGGAGTTTA+AGG | + | chr5_4:35169755-35169774 | Msa0848970:intron | 45.0% | |
| CCACCACCTTAAACTCCATA+AGG | - | chr5_4:35169764-35169783 | None:intergenic | 45.0% | |
| ! | CCTTATGGAGTTTAAGGTGG+TGG | + | chr5_4:35169761-35169780 | Msa0848970:intron | 45.0% |
| ACTTTCGATACAGACACCTC+AGG | + | chr5_4:35169868-35169887 | Msa0848970:intron | 45.0% | |
| ACTCATGAGGACAGAGTACA+TGG | - | chr5_4:35170892-35170911 | None:intergenic | 45.0% | |
| AACAAAGGGTAACCGTGACT+GGG | + | chr5_4:35171853-35171872 | Msa0848970:CDS | 45.0% | |
| ! | TTAGATGAAGTGAGGAGCAC+AGG | + | chr5_4:35171897-35171916 | Msa0848970:CDS | 45.0% |
| GTCTCCAGAGTTGAAGATGA+TGG | + | chr5_4:35172049-35172068 | Msa0848970:CDS | 45.0% | |
| !! | AATTAAAATATTATTACAAT+AGG | - | chr5_4:35169333-35169352 | None:intergenic | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | + | chr5_4:35170664-35170683 | Msa0848970:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | + | chr5_4:35170665-35170684 | Msa0848970:intron | 5.0% |
| !!! | AAAACATTATAAAATTTTAA+GGG | - | chr5_4:35170768-35170787 | None:intergenic | 5.0% |
| !!! | AAAAACATTATAAAATTTTA+AGG | - | chr5_4:35170769-35170788 | None:intergenic | 5.0% |
| !! | GGTTGACTTGCCACACCTTA+TGG | + | chr5_4:35169746-35169765 | Msa0848970:intron | 50.0% |
| GAGGACAGAGTACATGGCAT+TGG | - | chr5_4:35170886-35170905 | None:intergenic | 50.0% | |
| !!! | AGTGGTCGGGTTTTAAACCC+CGG | - | chr5_4:35170956-35170975 | None:intergenic | 50.0% |
| CAACAAAGGGTAACCGTGAC+TGG | + | chr5_4:35171852-35171871 | Msa0848970:CDS | 50.0% | |
| !! | AAGCACCTACTGGTTTCGTC+AGG | + | chr5_4:35171997-35172016 | Msa0848970:CDS | 50.0% |
| !! | AGCACCTACTGGTTTCGTCA+GGG | + | chr5_4:35171998-35172017 | Msa0848970:CDS | 50.0% |
| AGCGCCATCATCTTCAACTC+TGG | - | chr5_4:35172056-35172075 | None:intergenic | 50.0% | |
| !! | GCACCTACTGGTTTCGTCAG+GGG | + | chr5_4:35171999-35172018 | Msa0848970:CDS | 55.0% |
| ACACCCCTGACGAAACCAGT+AGG | - | chr5_4:35172005-35172024 | None:intergenic | 55.0% | |
| TTAGGGTCACCCACAGCTTG+CGG | - | chr5_4:35172029-35172048 | None:intergenic | 55.0% | |
| TAGGGTCACCCACAGCTTGC+GGG | - | chr5_4:35172028-35172047 | None:intergenic | 60.0% | |
| !! | AGGGGTGTCCCGCAAGCTGT+GGG | + | chr5_4:35172017-35172036 | Msa0848970:CDS | 65.0% |
| !! | CAGGGGTGTCCCGCAAGCTG+TGG | + | chr5_4:35172016-35172035 | Msa0848970:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 35169201 | 35172115 | 35169201 | ID=Msa0848970;Name=Msa0848970 |
| chr5_4 | mRNA | 35169201 | 35172115 | 35169201 | ID=Msa0848970-mRNA-1;Parent=Msa0848970;Name=Msa0848970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|147 |
| chr5_4 | exon | 35169201 | 35169275 | 35169201 | ID=Msa0848970-mRNA-1:exon:11787;Parent=Msa0848970-mRNA-1 |
| chr5_4 | exon | 35169373 | 35169448 | 35169373 | ID=Msa0848970-mRNA-1:exon:11788;Parent=Msa0848970-mRNA-1 |
| chr5_4 | exon | 35171823 | 35172115 | 35171823 | ID=Msa0848970-mRNA-1:exon:11789;Parent=Msa0848970-mRNA-1 |
| chr5_4 | CDS | 35169201 | 35169275 | 35169201 | ID=Msa0848970-mRNA-1:cds;Parent=Msa0848970-mRNA-1 |
| chr5_4 | CDS | 35169373 | 35169448 | 35169373 | ID=Msa0848970-mRNA-1:cds;Parent=Msa0848970-mRNA-1 |
| chr5_4 | CDS | 35171823 | 35172115 | 35171823 | ID=Msa0848970-mRNA-1:cds;Parent=Msa0848970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
