AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1007900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007900 MtrunA17_Chr7g0218181 94.278 367 21 0 1 367 1 367 0.0 722
Msa1007900 MtrunA17_Chr7g0218131 79.032 372 71 3 1 367 1 370 0.0 613
Msa1007900 MtrunA17_Chr7g0218211 73.442 369 93 2 3 367 2 369 0.0 576
Msa1007900 MtrunA17_Chr7g0218261 74.797 369 87 2 3 367 2 368 0.0 573
Msa1007900 MtrunA17_Chr7g0218301 69.149 376 106 3 1 367 1 375 0.0 534
Msa1007900 MtrunA17_Chr7g0218271 68.351 376 109 3 1 367 1 375 0.0 534
Msa1007900 MtrunA17_Chr2g0307521 66.486 370 114 3 1 367 1 363 0.0 514
Msa1007900 MtrunA17_Chr1g0200491 63.483 356 121 3 19 367 19 372 3.26e-169 476
Msa1007900 MtrunA17_Chr1g0163601 49.731 372 174 6 5 367 3 370 5.27e-131 379
Msa1007900 MtrunA17_Chr1g0163611 48.387 372 179 6 5 367 3 370 7.94e-129 374
Msa1007900 MtrunA17_Chr3g0085201 54.391 353 151 6 21 367 9 357 7.70e-126 366
Msa1007900 MtrunA17_Chr3g0085211 53.541 353 154 6 21 367 22 370 8.09e-124 361
Msa1007900 MtrunA17_Chr1g0163621 50.704 355 163 5 22 367 33 384 4.44e-122 357
Msa1007900 MtrunA17_Chr3g0128011 47.107 363 181 7 10 367 61 417 5.04e-109 325
Msa1007900 MtrunA17_Chr5g0448091 42.179 358 192 8 19 367 12 363 1.80e-94 286
Msa1007900 MtrunA17_Chr8g0367441 40.157 381 210 10 1 367 1 377 3.08e-91 278
Msa1007900 MtrunA17_Chr7g0276401 41.033 368 207 7 5 367 13 375 3.72e-91 278
Msa1007900 MtrunA17_Chr7g0276411 41.737 357 196 7 19 367 10 362 3.09e-88 270
Msa1007900 MtrunA17_Chr8g0367451 39.776 357 203 8 19 367 24 376 2.32e-85 263
Msa1007900 MtrunA17_Chr8g0367491 39.828 349 199 7 26 367 32 376 7.60e-84 259
Msa1007900 MtrunA17_Chr8g0367501 39.296 341 196 6 35 367 28 365 4.91e-80 251
Msa1007900 MtrunA17_Chr8g0367381 41.049 324 161 9 19 334 25 326 1.40e-75 236
Msa1007900 MtrunA17_Chr8g0345851 42.456 285 151 6 89 367 13 290 4.83e-71 223
Msa1007900 MtrunA17_Chr2g0314271 38.650 326 181 10 33 348 20 336 3.79e-65 210
Msa1007900 MtrunA17_Chr3g0130011 35.876 354 203 9 26 367 17 358 1.58e-58 193
Msa1007900 MtrunA17_Chr3g0130061 35.799 338 196 8 26 352 17 344 5.57e-58 192
Msa1007900 MtrunA17_Chr6g0482291 44.865 185 92 3 184 367 1 176 2.40e-50 166
Msa1007900 MtrunA17_Chr3g0121301 33.438 320 197 9 39 352 38 347 2.71e-49 169
Msa1007900 MtrunA17_Chr4g0022021 33.333 321 197 10 41 353 44 355 1.60e-47 165
Msa1007900 MtrunA17_Chr1g0188371 29.661 354 217 11 20 351 2 345 3.88e-46 161
Msa1007900 MtrunA17_Chr4g0021981 41.000 200 112 5 158 353 158 355 9.18e-45 157
Msa1007900 MtrunA17_Chr1g0188391 29.688 320 212 6 41 352 33 347 1.88e-43 154
Msa1007900 MtrunA17_Chr5g0432251 29.167 312 203 9 65 366 55 358 1.02e-42 152
Msa1007900 MtrunA17_Chr4g0014561 31.487 343 207 10 40 366 32 362 4.61e-41 147
Msa1007900 MtrunA17_Chr4g0014681 31.195 343 208 10 40 366 32 362 3.82e-40 145
Msa1007900 MtrunA17_Chr7g0219161 27.304 293 202 5 66 355 62 346 5.57e-39 142
Msa1007900 MtrunA17_Chr5g0432301 28.617 311 208 8 62 366 57 359 7.21e-39 142
Msa1007900 MtrunA17_Chr5g0432241 28.912 294 198 6 78 366 72 359 8.16e-38 139
Msa1007900 MtrunA17_Chr4g0014641 30.029 343 212 10 40 366 32 362 1.73e-37 138
Msa1007900 MtrunA17_Chr4g0046361 29.179 329 218 8 34 353 26 348 4.14e-37 137
Msa1007900 MtrunA17_Chr7g0223241 28.920 287 180 9 81 361 73 341 1.34e-36 135
Msa1007900 MtrunA17_Chr7g0219141 25.893 336 227 7 41 366 33 356 5.21e-36 134
Msa1007900 MtrunA17_Chr7g0223231 28.938 273 174 8 81 347 73 331 7.14e-36 134
Msa1007900 MtrunA17_Chr4g0040621 27.747 364 238 10 6 353 2 356 8.39e-36 134
Msa1007900 MtrunA17_Chr4g0046531 26.935 323 218 6 38 352 30 342 2.66e-35 137
Msa1007900 MtrunA17_Chr4g0046531 26.113 337 230 6 38 366 392 717 2.68e-35 137
Msa1007900 MtrunA17_Chr8g0367401 50.909 110 54 0 161 270 2 111 1.11e-34 124
Msa1007900 MtrunA17_Chr5g0432211 31.489 235 155 3 137 366 111 344 3.60e-34 129
Msa1007900 MtrunA17_Chr6g0476581 70.000 90 23 2 1 86 1 90 9.57e-34 121
Msa1007900 MtrunA17_Chr4g0046341 29.226 349 220 9 34 366 26 363 5.19e-33 126
Msa1007900 MtrunA17_Chr1g0170941 69.737 76 23 0 192 267 1 76 1.32e-31 114
Msa1007900 MtrunA17_Chr5g0432261 33.929 168 107 2 202 366 160 326 1.07e-29 116
Msa1007900 MtrunA17_Chr4g0014661 28.060 335 221 9 41 366 33 356 8.33e-28 112
Msa1007900 MtrunA17_Chr4g0014591 28.024 339 218 11 40 366 32 356 1.90e-25 105
Msa1007900 MtrunA17_Chr8g0367461 45.217 115 57 3 256 367 1 112 3.33e-25 98.6
Msa1007900 MtrunA17_Chr1g0170931 46.552 116 53 2 26 134 6 119 4.50e-25 98.6
Msa1007900 MtrunA17_Chr8g0367421 41.818 110 47 1 161 270 2 94 1.35e-23 94.7
Msa1007900 MtrunA17_Chr8g0367391 42.991 107 59 2 262 367 29 134 1.69e-21 89.4
Msa1007900 MtrunA17_Chr4g0014601 28.631 241 151 9 40 272 32 259 1.26e-19 87.4
Msa1007900 MtrunA17_Chr7g0219171 33.582 134 82 4 237 366 117 247 6.72e-19 85.1
Msa1007900 MtrunA17_Chr8g0367471 47.297 74 39 0 184 257 1 74 4.08e-16 73.2
Msa1007900 MtrunA17_Chr1g0170951 44.286 70 39 0 278 347 17 86 1.30e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007900 AT5G54160.1 47.989 348 175 4 15 359 10 354 1.53e-111 330
Msa1007900 AT1G77520.1 39.437 355 200 8 25 367 30 381 3.58e-83 258
Msa1007900 AT1G51990.2 37.677 353 210 5 21 366 12 361 4.70e-82 254
Msa1007900 AT1G51990.1 37.394 353 211 5 21 366 12 361 7.62e-81 251
Msa1007900 AT1G33030.1 38.244 353 207 8 21 367 3 350 3.64e-78 244
Msa1007900 AT1G21100.1 41.417 367 188 11 5 357 11 364 1.37e-74 236
Msa1007900 AT1G63140.2 39.612 361 199 10 21 367 26 381 1.98e-74 236
Msa1007900 AT1G63140.4 39.612 361 199 10 21 367 46 401 2.31e-74 236
Msa1007900 AT1G21130.1 40.872 367 190 11 5 357 11 364 4.57e-73 232
Msa1007900 AT1G21110.1 41.144 367 189 11 5 357 11 364 7.81e-72 229
Msa1007900 AT5G53810.1 39.474 342 193 7 38 367 39 378 1.13e-71 228
Msa1007900 AT1G77530.1 38.873 355 202 9 25 367 30 381 1.86e-71 228
Msa1007900 AT1G21120.1 40.599 367 191 11 5 357 11 364 1.42e-70 225
Msa1007900 AT1G21120.2 40.599 367 191 11 5 357 59 412 8.22e-70 225
Msa1007900 AT1G76790.1 38.482 369 201 10 17 367 5 365 3.59e-68 219
Msa1007900 AT3G53140.1 35.905 337 191 8 26 347 14 340 2.47e-61 201
Msa1007900 AT1G62900.1 45.813 203 107 3 167 367 4 205 1.74e-57 186
Msa1007900 AT5G37170.1 35.714 322 160 10 57 367 49 334 1.08e-54 183
Msa1007900 AT5G37170.2 43.500 200 105 5 173 367 38 234 4.16e-51 171
Msa1007900 AT1G33030.3 36.576 257 154 6 21 272 3 255 3.44e-49 167
Msa1007900 AT1G33030.2 36.614 254 152 6 21 269 3 252 4.10e-48 164
Msa1007900 AT5G37170.3 43.386 189 99 5 184 367 1 186 4.91e-48 161
Msa1007900 AT1G21130.2 40.364 275 143 8 5 269 11 274 3.08e-44 154
Msa1007900 AT1G63140.1 38.697 261 144 7 21 269 46 302 2.14e-43 152
Msa1007900 AT4G35150.1 34.951 206 124 3 157 352 105 310 8.77e-39 141
Msa1007900 AT4G35160.1 31.722 331 202 10 39 352 44 367 6.43e-38 140
Msa1007900 AT1G77530.2 37.179 234 135 6 25 248 30 261 4.00e-34 127
Msa1007900 AT1G63140.3 37.021 235 132 7 21 243 46 276 1.73e-32 123

Find 73 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAATATCCATCAATTA+AGG 0.143550 7_1:-7648811 Msa1007900:CDS
TGCTAAAGAATATGAAATTT+TGG 0.154985 7_1:-7647330 Msa1007900:CDS
TCATTGATTTGTTGAATATT+TGG 0.166485 7_1:+7648949 None:intergenic
TGTTGTGCTTTCTCCATTAT+TGG 0.201075 7_1:-7647272 Msa1007900:CDS
GACCTATTCAAGAAAGTTAA+TGG 0.210657 7_1:-7649014 Msa1007900:CDS
TACAAAGCTTTGCCTCAAAA+TGG 0.249404 7_1:-7647470 Msa1007900:CDS
CTGGATGCATTTGTTGGTTC+TGG 0.263376 7_1:+7647410 None:intergenic
CTCAACTTGTTTGAAATCAT+TGG 0.292345 7_1:-7650807 Msa1007900:CDS
GTATCAACTTTGGTTGATAT+TGG 0.295454 7_1:-7648867 Msa1007900:CDS
ATGTGTCACCCTGCTTTGAT+AGG 0.308455 7_1:-7650546 Msa1007900:CDS
TTATAAATAAATAAACAAAT+AGG 0.310244 7_1:-7647237 Msa1007900:exon
TTTGTTGGTTCTGGACATTC+TGG 0.311438 7_1:+7647419 None:intergenic
CATATCCTTTATATATTTCA+AGG 0.318200 7_1:+7648895 None:intergenic
ATCAATAATTGAAGCAAATC+TGG 0.319009 7_1:+7647391 None:intergenic
AAATTGATTCCCTTAATTGA+TGG 0.325335 7_1:+7648801 None:intergenic
GATACCAACCTTAAGCATTA+TGG 0.328993 7_1:+7647663 None:intergenic
TTCCATTAACTTTCTTGAAT+AGG 0.343440 7_1:+7649012 None:intergenic
AATTTCCATCACTCCAATAA+TGG 0.352953 7_1:+7647259 None:intergenic
GCTCACTTTGTCATTGGAAT+AGG 0.353123 7_1:+7650938 None:intergenic
AACTGCTGGAAACACCAAAT+TGG 0.362727 7_1:+7650848 None:intergenic
TCTAGGCTGTATGTCATAAT+TGG 0.366231 7_1:-7647529 Msa1007900:intron
CATGGTACTAGGTGCCAATT+TGG 0.366934 7_1:-7650862 Msa1007900:CDS
AAAATCCTTGAAATATATAA+AGG 0.371676 7_1:-7648900 Msa1007900:CDS
GTCTCATTGTCATCTATTTG+TGG 0.377865 7_1:+7650894 None:intergenic
TAACTAAGTATGAGTACTTT+GGG 0.380596 7_1:-7648989 Msa1007900:CDS
GCAAAATATCCATCAATTAA+GGG 0.391669 7_1:-7648810 Msa1007900:CDS
AACATGGCTCACTTTGTCAT+TGG 0.401446 7_1:+7650932 None:intergenic
TATTTATAGGTTGAATTTCA+AGG 0.403327 7_1:-7649060 Msa1007900:intron
GTTGATATTGGAGGTGGAAA+TGG 0.403826 7_1:-7648855 Msa1007900:CDS
AACACTCTGATTTGCCGAAT+CGG 0.413135 7_1:-7650737 Msa1007900:CDS
TTCTTGAATAGGTCAATCTC+TGG 0.434820 7_1:+7649023 None:intergenic
TGAAATATATAAAGGATATG+AGG 0.436772 7_1:-7648892 Msa1007900:CDS
CTCTTCTGTCTATTTCTACT+CGG 0.445033 7_1:-7650680 Msa1007900:CDS
TTGAATATTTGGTTTACTTG+TGG 0.449932 7_1:+7648960 None:intergenic
ATAACTAAGTATGAGTACTT+TGG 0.451042 7_1:-7648990 Msa1007900:CDS
ACACTATCTGCCATGGTACT+AGG 0.455331 7_1:-7650873 Msa1007900:CDS
AGGAGATGCCATAATGCTTA+AGG 0.462667 7_1:-7647671 Msa1007900:intron
AACATACGGTCAAGCCGATT+CGG 0.465431 7_1:+7650723 None:intergenic
ATTGCAGCATTAAGAACTGC+TGG 0.480012 7_1:+7650834 None:intergenic
CACAATGCTACCATCATCAT+TGG 0.482440 7_1:+7650656 None:intergenic
GAAAATGCATCACCCATTCC+AGG 0.488403 7_1:-7648759 Msa1007900:intron
ACTTTGGTTGATATTGGAGG+TGG 0.490275 7_1:-7648861 Msa1007900:CDS
CATTTAGGGATTGAGCATGT+TGG 0.508771 7_1:-7647721 Msa1007900:intron
TTGTTTGAAATCATTGGTGA+TGG 0.517050 7_1:-7650801 Msa1007900:CDS
TGTGTCACCCTGCTTTGATA+GGG 0.518341 7_1:-7650545 Msa1007900:CDS
TCAACTTTGGTTGATATTGG+AGG 0.519640 7_1:-7648864 Msa1007900:CDS
TACCACAACCCTATCAAAGC+AGG 0.522755 7_1:+7650537 None:intergenic
GCAAATCTGGATGCATTTGT+TGG 0.524259 7_1:+7647404 None:intergenic
ACCCTGCTTTGATAGGGTTG+TGG 0.524365 7_1:-7650539 Msa1007900:intron
TCTCATTGTCATCTATTTGT+GGG 0.525324 7_1:+7650895 None:intergenic
CAAATTGGCACCTAGTACCA+TGG 0.530083 7_1:+7650863 None:intergenic
TTTCTCCATTATTGGAGTGA+TGG 0.540479 7_1:-7647264 Msa1007900:CDS
ATCATGTTCATTAATGCTGG+TGG 0.543605 7_1:-7647365 Msa1007900:CDS
GGCAAATCAGAGTGTTGAGT+TGG 0.551660 7_1:+7650744 None:intergenic
AGCATTATGGCATCTCCTTG+TGG 0.554368 7_1:+7647676 None:intergenic
AAATGGAAAGGTGATTCTTG+TGG 0.554848 7_1:-7647453 Msa1007900:CDS
AATATCATGTTCATTAATGC+TGG 0.556116 7_1:-7647368 Msa1007900:CDS
GAAATATATAAAGGATATGA+GGG 0.561483 7_1:-7648891 Msa1007900:CDS
GGCTGTATGTCATAATTGGT+CGG 0.563483 7_1:-7647525 Msa1007900:CDS
TTGCAAGCAAGCGCAACATA+CGG 0.566577 7_1:+7650709 None:intergenic
ATATGAGGGAGTATCAACTT+TGG 0.569528 7_1:-7648877 Msa1007900:CDS
TTAGGGATTGAGCATGTTGG+AGG 0.570708 7_1:-7647718 Msa1007900:intron
TAGCAAAAGTATTTACCAGA+AGG 0.577256 7_1:+7650615 None:intergenic
AATAGTGATCGTGGTTATGT+TGG 0.579280 7_1:-7650585 Msa1007900:CDS
TCTACTCGGACCAATGATGA+TGG 0.584557 7_1:-7650666 Msa1007900:CDS
GTGACACATAAATGATGTGA+AGG 0.592598 7_1:+7650560 None:intergenic
TGACAAAGTGAGCCATGTTG+TGG 0.601208 7_1:-7650928 Msa1007900:CDS
AGCTTTGCCTCAAAATGGAA+AGG 0.607753 7_1:-7647465 Msa1007900:CDS
CAATGAGACACTATCTGCCA+TGG 0.611196 7_1:-7650880 Msa1007900:CDS
GGATGTGAGTTTCCACAACA+TGG 0.615218 7_1:+7650916 None:intergenic
ACCACAACCCTATCAAAGCA+GGG 0.658650 7_1:+7650538 None:intergenic
TATGATGAAAATAGTGATCG+TGG 0.700099 7_1:-7650594 Msa1007900:CDS
ATGTTTGAAAGTATTCCACA+AGG 0.713824 7_1:-7647691 Msa1007900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAATAAATAATTAAACA+AGG + chr7_1:7647653-7647672 None:intergenic 10.0%
!! TATATATATATCTTTATTAG+TGG - chr7_1:7647896-7647915 Msa1007900:intron 10.0%
!! ATATATATATCTTTATTAGT+GGG - chr7_1:7647897-7647916 Msa1007900:intron 10.0%
!!! GTTTATTATAGTTTTTTTTA+AGG + chr7_1:7648868-7648887 None:intergenic 10.0%
!! TAAAAAAAACTATAATAAAC+AGG - chr7_1:7648868-7648887 Msa1007900:CDS 10.0%
!! AAAGATAATTTAACTATTAA+TGG + chr7_1:7648992-7649011 None:intergenic 10.0%
!! AAGAAAAAAAAAATCAATAT+TGG + chr7_1:7649525-7649544 None:intergenic 10.0%
!!! ATATTGATTTTTTTTTTCTT+CGG - chr7_1:7649525-7649544 Msa1007900:intron 10.0%
!! ATTCACTTAAAAATTAATTA+AGG + chr7_1:7649778-7649797 None:intergenic 10.0%
!! AATATAAACTTACAATTCAA+TGG - chr7_1:7647724-7647743 Msa1007900:intron 15.0%
!!! ACTAGTCTTTTTTTTTTTTT+TGG + chr7_1:7648382-7648401 None:intergenic 15.0%
!!! TGAATATAGCTTTTTTTTTA+TGG - chr7_1:7648441-7648460 Msa1007900:intron 15.0%
!! AAAATCCTTGAAATATATAA+AGG - chr7_1:7649235-7649254 Msa1007900:intron 15.0%
!!! TTAATTTGATATCATCTAAA+AGG - chr7_1:7649447-7649466 Msa1007900:intron 15.0%
!!! TATTGATTTTTTTTTTCTTC+GGG - chr7_1:7649526-7649545 Msa1007900:intron 15.0%
!!! ACTCATATAACTAATTTTAT+TGG - chr7_1:7649706-7649725 Msa1007900:intron 15.0%
!!! TAACTAATTTTATTGGTTTT+TGG - chr7_1:7649713-7649732 Msa1007900:intron 15.0%
!! TTTAAGTGAATTTGAAAAAT+TGG - chr7_1:7649787-7649806 Msa1007900:intron 15.0%
!! TTAAGTGAATTTGAAAAATT+GGG - chr7_1:7649788-7649807 Msa1007900:intron 15.0%
!!! ATTCAATTTTCTTACTAATA+CGG + chr7_1:7649864-7649883 None:intergenic 15.0%
!! TAAGAAAATTGAATATTGAA+CGG - chr7_1:7649870-7649889 Msa1007900:intron 15.0%
!!! TATAATGTCTAACTATTTTT+TGG - chr7_1:7649920-7649939 Msa1007900:intron 15.0%
!! TACAATATATTAGTTATCAA+GGG + chr7_1:7650087-7650106 None:intergenic 15.0%
!! TTTATAATATGAATCTGAAA+AGG - chr7_1:7650212-7650231 Msa1007900:intron 15.0%
!!! TTATTTTACTAAAATTAGTG+AGG - chr7_1:7650250-7650269 Msa1007900:intron 15.0%
!!! TATTTTACTAAAATTAGTGA+GGG - chr7_1:7650251-7650270 Msa1007900:intron 15.0%
!!! TATTTTCAATTCATAATCTT+GGG + chr7_1:7650385-7650404 None:intergenic 15.0%
!! AAAATAGACAAATTACATTT+AGG - chr7_1:7650399-7650418 Msa1007900:intron 15.0%
!! AAATAGACAAATTACATTTA+GGG - chr7_1:7650400-7650419 Msa1007900:intron 15.0%
!! TAAACAAGGTAAACAAAATT+AGG + chr7_1:7647639-7647658 None:intergenic 20.0%
!!! CAATGATACTTTTTTTTTGA+AGG + chr7_1:7647805-7647824 None:intergenic 20.0%
!!! AGTCTTTTTTTTTTTTTTGG+TGG + chr7_1:7648379-7648398 None:intergenic 20.0%
!!! AACAAATCATTTAGTTTGTT+TGG - chr7_1:7648679-7648698 Msa1007900:intron 20.0%
!!! TTTTAAAAAGCTCTAACAAA+CGG - chr7_1:7648798-7648817 Msa1007900:CDS 20.0%
!! TTCTACCAAAATTAACTAAT+AGG - chr7_1:7648962-7648981 Msa1007900:CDS 20.0%
!!! TATTTATAGGTTGAATTTCA+AGG - chr7_1:7649075-7649094 Msa1007900:intron 20.0%
!!! TCATTGATTTGTTGAATATT+TGG + chr7_1:7649189-7649208 None:intergenic 20.0%
!!! GATTTTTTTCATGTGAATTT+TGG + chr7_1:7649221-7649240 None:intergenic 20.0%
!! CATATCCTTTATATATTTCA+AGG + chr7_1:7649243-7649262 None:intergenic 20.0%
!! TGAAATATATAAAGGATATG+AGG - chr7_1:7649243-7649262 Msa1007900:intron 20.0%
!! GAAATATATAAAGGATATGA+GGG - chr7_1:7649244-7649263 Msa1007900:intron 20.0%
!!! TTGAAATAACTTGGTTTTAT+GGG - chr7_1:7649410-7649429 Msa1007900:intron 20.0%
!! AATTATCCACAATTATTCAA+AGG - chr7_1:7649738-7649757 Msa1007900:intron 20.0%
!!! TTCAATTTTCTTACTAATAC+GGG + chr7_1:7649863-7649882 None:intergenic 20.0%
!! GTACAATATATTAGTTATCA+AGG + chr7_1:7650088-7650107 None:intergenic 20.0%
!! TGTTAAAATAATTGTTGAAC+TGG + chr7_1:7650360-7650379 None:intergenic 20.0%
!!! CTATTTTCAATTCATAATCT+TGG + chr7_1:7650386-7650405 None:intergenic 20.0%
!! TGTTAGAATGACATATAATT+TGG + chr7_1:7650511-7650530 None:intergenic 20.0%
!!! TGCTAAAGAATATGAAATTT+TGG - chr7_1:7650805-7650824 Msa1007900:CDS 20.0%
!! ATTCAACCAAAAAAATAACA+AGG + chr7_1:7650939-7650958 None:intergenic 20.0%
!!! TAGTTTGATAACATTTTGCT+TGG + chr7_1:7648001-7648020 None:intergenic 25.0%
!!! ATTTTTTCCTGTGTCAATTT+CGG + chr7_1:7648221-7648240 None:intergenic 25.0%
! ACAGGAAAAAATAAAATCAG+AGG - chr7_1:7648229-7648248 Msa1007900:intron 25.0%
! ACAATGCATAAAAATATGCA+AGG - chr7_1:7648336-7648355 Msa1007900:intron 25.0%
!!! CTTTTTTTTTTTTTTGGTGG+CGG + chr7_1:7648376-7648395 None:intergenic 25.0%
! AAAAAAAAGCTATATTCACG+AGG + chr7_1:7648439-7648458 None:intergenic 25.0%
! GGTCAAATGTAATATAAGAA+AGG + chr7_1:7648495-7648514 None:intergenic 25.0%
! AATCATACGATGAAGAATAA+TGG + chr7_1:7648525-7648544 None:intergenic 25.0%
!! ATCTATTTTGTGTTTGTTTG+CGG - chr7_1:7648635-7648654 Msa1007900:intron 25.0%
! ATCAAATGAGAGAGAAAATA+TGG + chr7_1:7648757-7648776 None:intergenic 25.0%
!! GAAAGCCTATTAGTTAATTT+TGG + chr7_1:7648970-7648989 None:intergenic 25.0%
! TTCCATTAACTTTCTTGAAT+AGG + chr7_1:7649126-7649145 None:intergenic 25.0%
! ATAACTAAGTATGAGTACTT+TGG - chr7_1:7649145-7649164 Msa1007900:intron 25.0%
! TAACTAAGTATGAGTACTTT+GGG - chr7_1:7649146-7649165 Msa1007900:intron 25.0%
!! TTGAATATTTGGTTTACTTG+TGG + chr7_1:7649178-7649197 None:intergenic 25.0%
! TGCAAAATATCCATCAATTA+AGG - chr7_1:7649324-7649343 Msa1007900:intron 25.0%
! GCAAAATATCCATCAATTAA+GGG - chr7_1:7649325-7649344 Msa1007900:intron 25.0%
!! AAATTGATTCCCTTAATTGA+TGG + chr7_1:7649337-7649356 None:intergenic 25.0%
!! CTCTTTTTCTTGAAATAACT+TGG - chr7_1:7649401-7649420 Msa1007900:intron 25.0%
!!! CTTGAAATAACTTGGTTTTA+TGG - chr7_1:7649409-7649428 Msa1007900:intron 25.0%
! TTCGGGAAATTTGAAAAAAT+AGG - chr7_1:7649543-7649562 Msa1007900:intron 25.0%
!!! GTAGAGTAAAATTTAGTTTG+TGG - chr7_1:7649666-7649685 Msa1007900:intron 25.0%
! AATTAATTAAGGTAAGACCT+AGG + chr7_1:7649767-7649786 None:intergenic 25.0%
!! CTTTACCTTATAGATAGTTT+TGG - chr7_1:7649815-7649834 Msa1007900:intron 25.0%
! ATGTACCAAAACTATCTATA+AGG + chr7_1:7649823-7649842 None:intergenic 25.0%
!!! ACATGTGAGTTTTGTTTTTT+TGG + chr7_1:7650018-7650037 None:intergenic 25.0%
! AGTTTCAAGCACATATAATA+AGG + chr7_1:7650142-7650161 None:intergenic 25.0%
! AATATGAATCTGAAAAGGAA+AGG - chr7_1:7650217-7650236 Msa1007900:intron 25.0%
! ATATGAATCTGAAAAGGAAA+GGG - chr7_1:7650218-7650237 Msa1007900:intron 25.0%
! GAATGTCATTCTAATATGTA+TGG + chr7_1:7650303-7650322 None:intergenic 25.0%
! ATCAATAATTGAAGCAAATC+TGG + chr7_1:7650747-7650766 None:intergenic 25.0%
! AATATCATGTTCATTAATGC+TGG - chr7_1:7650767-7650786 Msa1007900:CDS 25.0%
!!! CAGTTTCCTTGTTATTTTTT+TGG - chr7_1:7650930-7650949 Msa1007900:CDS 25.0%
!!! GGAACTCATGTTTGTTTTTT+TGG + chr7_1:7647179-7647198 None:intergenic 30.0%
TCTCATTGTCATCTATTTGT+GGG + chr7_1:7647243-7647262 None:intergenic 30.0%
! CTCAACTTGTTTGAAATCAT+TGG - chr7_1:7647328-7647347 Msa1007900:CDS 30.0%
! TTGTTTGAAATCATTGGTGA+TGG - chr7_1:7647334-7647353 Msa1007900:CDS 30.0%
!! TAGCAAAAGTATTTACCAGA+AGG + chr7_1:7647523-7647542 None:intergenic 30.0%
TATGATGAAAATAGTGATCG+TGG - chr7_1:7647541-7647560 Msa1007900:intron 30.0%
AAGGTAAACAAAATTAGGCA+AGG + chr7_1:7647634-7647653 None:intergenic 30.0%
AAAGTATAGCTATATTCACG+AGG + chr7_1:7648469-7648488 None:intergenic 30.0%
!! ATGAAGAATAATGGATGAGA+GGG + chr7_1:7648516-7648535 None:intergenic 30.0%
TATTCTTCATCGTATGATTG+AGG - chr7_1:7648526-7648545 Msa1007900:intron 30.0%
ATTCTTCATCGTATGATTGA+GGG - chr7_1:7648527-7648546 Msa1007900:intron 30.0%
GACCTATTCAAGAAAGTTAA+TGG - chr7_1:7649121-7649140 Msa1007900:intron 30.0%
! GTATCAACTTTGGTTGATAT+TGG - chr7_1:7649268-7649287 Msa1007900:intron 30.0%
!! ATTTCAAGAAAAAGAGTACC+TGG + chr7_1:7649397-7649416 None:intergenic 30.0%
!!! AAATAACTTGGTTTTATGGG+AGG - chr7_1:7649413-7649432 Msa1007900:intron 30.0%
AGGTTACCTTTGAATAATTG+TGG + chr7_1:7649747-7649766 None:intergenic 30.0%
CAATTATTCAAAGGTAACCT+AGG - chr7_1:7649747-7649766 Msa1007900:intron 30.0%
GAACTGGTCATTAATACAAA+GGG + chr7_1:7650344-7650363 None:intergenic 30.0%
TGAACTGGTCATTAATACAA+AGG + chr7_1:7650345-7650364 None:intergenic 30.0%
!! ATGTTTGAAAGTATTCCACA+AGG - chr7_1:7650444-7650463 Msa1007900:intron 30.0%
CTCAATAAAATAGTGCTTAC+TGG - chr7_1:7650557-7650576 Msa1007900:CDS 30.0%
AATTTCCATCACTCCAATAA+TGG + chr7_1:7650879-7650898 None:intergenic 30.0%
GTCTCATTGTCATCTATTTG+TGG + chr7_1:7647244-7647263 None:intergenic 35.0%
!! CTCTTCTGTCTATTTCTACT+CGG - chr7_1:7647455-7647474 Msa1007900:CDS 35.0%
AATAGTGATCGTGGTTATGT+TGG - chr7_1:7647550-7647569 Msa1007900:intron 35.0%
GTGACACATAAATGATGTGA+AGG + chr7_1:7647578-7647597 None:intergenic 35.0%
GGATAATGCATAATACATGC+AGG + chr7_1:7648065-7648084 None:intergenic 35.0%
!!! TTTTTTTTTTGGTGGCGGTT+CGG + chr7_1:7648371-7648390 None:intergenic 35.0%
!! GATGAAGAATAATGGATGAG+AGG + chr7_1:7648517-7648536 None:intergenic 35.0%
TTCTTGAATAGGTCAATCTC+TGG + chr7_1:7649115-7649134 None:intergenic 35.0%
!! ATATGAGGGAGTATCAACTT+TGG - chr7_1:7649258-7649277 Msa1007900:intron 35.0%
! TCAACTTTGGTTGATATTGG+AGG - chr7_1:7649271-7649290 Msa1007900:intron 35.0%
! CATTTTCAATCACTTGAGGA+AGG + chr7_1:7649363-7649382 None:intergenic 35.0%
! GATGCATTTTCAATCACTTG+AGG + chr7_1:7649367-7649386 None:intergenic 35.0%
!! AGAAAAAGAGTACCTGGAAT+GGG + chr7_1:7649391-7649410 None:intergenic 35.0%
!! AAGAAAAAGAGTACCTGGAA+TGG + chr7_1:7649392-7649411 None:intergenic 35.0%
TGACGATTCCCGAATATTTA+GGG - chr7_1:7650059-7650078 Msa1007900:intron 35.0%
TGATATCCTAGAGGGAAAAT+GGG + chr7_1:7650110-7650129 None:intergenic 35.0%
TTGATATCCTAGAGGGAAAA+TGG + chr7_1:7650111-7650130 None:intergenic 35.0%
GAGTTCTTTGATATCCTAGA+GGG + chr7_1:7650118-7650137 None:intergenic 35.0%
AGAGTTCTTTGATATCCTAG+AGG + chr7_1:7650119-7650138 None:intergenic 35.0%
!!! TACCTTTGAAGCTTCTTTTG+TGG - chr7_1:7650276-7650295 Msa1007900:intron 35.0%
GATACCAACCTTAAGCATTA+TGG + chr7_1:7650475-7650494 None:intergenic 35.0%
TATCCCTATTTCGTTGTTCT+AGG - chr7_1:7650589-7650608 Msa1007900:CDS 35.0%
TCTAGGCTGTATGTCATAAT+TGG - chr7_1:7650606-7650625 Msa1007900:CDS 35.0%
TACAAAGCTTTGCCTCAAAA+TGG - chr7_1:7650665-7650684 Msa1007900:CDS 35.0%
! AGAATCACCTTTCCATTTTG+AGG + chr7_1:7650680-7650699 None:intergenic 35.0%
AAATGGAAAGGTGATTCTTG+TGG - chr7_1:7650682-7650701 Msa1007900:CDS 35.0%
ATCATGTTCATTAATGCTGG+TGG - chr7_1:7650770-7650789 Msa1007900:CDS 35.0%
!!! GAAATTTTGGCTCAACAATC+TGG - chr7_1:7650818-7650837 Msa1007900:CDS 35.0%
TGTTGTGCTTTCTCCATTAT+TGG - chr7_1:7650863-7650882 Msa1007900:CDS 35.0%
TTTCTCCATTATTGGAGTGA+TGG - chr7_1:7650871-7650890 Msa1007900:CDS 35.0%
GCTCACTTTGTCATTGGAAT+AGG + chr7_1:7647200-7647219 None:intergenic 40.0%
AACATGGCTCACTTTGTCAT+TGG + chr7_1:7647206-7647225 None:intergenic 40.0%
AACTGCTGGAAACACCAAAT+TGG + chr7_1:7647290-7647309 None:intergenic 40.0%
ATTGCAGCATTAAGAACTGC+TGG + chr7_1:7647304-7647323 None:intergenic 40.0%
! AACACTCTGATTTGCCGAAT+CGG - chr7_1:7647398-7647417 Msa1007900:CDS 40.0%
CACAATGCTACCATCATCAT+TGG + chr7_1:7647482-7647501 None:intergenic 40.0%
ATTAGTGGGAAATGTGTTGC+AGG - chr7_1:7647911-7647930 Msa1007900:intron 40.0%
TGCATAATACATGCAGGAGT+CGG + chr7_1:7648059-7648078 None:intergenic 40.0%
GAGCTTAGCTCACTTGATAA+AGG + chr7_1:7648086-7648105 None:intergenic 40.0%
TATCAAGTGAGCTAAGCTCA+TGG - chr7_1:7648087-7648106 Msa1007900:intron 40.0%
ATCAAGTGAGCTAAGCTCAT+GGG - chr7_1:7648088-7648107 Msa1007900:intron 40.0%
TAACACACCGAAATTGACAC+AGG - chr7_1:7648211-7648230 Msa1007900:intron 40.0%
! GATTGAGGGATCGTTTGTTA+CGG - chr7_1:7648541-7648560 Msa1007900:intron 40.0%
! ACTTTGGTTGATATTGGAGG+TGG - chr7_1:7649274-7649293 Msa1007900:intron 40.0%
GTTGATATTGGAGGTGGAAA+TGG - chr7_1:7649280-7649299 Msa1007900:intron 40.0%
GTGACGATTCCCGAATATTT+AGG - chr7_1:7650058-7650077 Msa1007900:intron 40.0%
TCAAGGGAGCCCTAAATATT+CGG + chr7_1:7650071-7650090 None:intergenic 40.0%
! ATTGTACCCATTTTCCCTCT+AGG - chr7_1:7650101-7650120 Msa1007900:intron 40.0%
GACCACAAAAGAAGCTTCAA+AGG + chr7_1:7650281-7650300 None:intergenic 40.0%
CATTTAGGGATTGAGCATGT+TGG - chr7_1:7650414-7650433 Msa1007900:intron 40.0%
AGGAGATGCCATAATGCTTA+AGG - chr7_1:7650464-7650483 Msa1007900:intron 40.0%
GATGCCATAATGCTTAAGGT+TGG - chr7_1:7650468-7650487 Msa1007900:intron 40.0%
CAGCCTAGAACAACGAAATA+GGG + chr7_1:7650595-7650614 None:intergenic 40.0%
ACAGCCTAGAACAACGAAAT+AGG + chr7_1:7650596-7650615 None:intergenic 40.0%
GGCTGTATGTCATAATTGGT+CGG - chr7_1:7650610-7650629 Msa1007900:CDS 40.0%
AGCTTTGCCTCAAAATGGAA+AGG - chr7_1:7650670-7650689 Msa1007900:CDS 40.0%
!! TTTGTTGGTTCTGGACATTC+TGG + chr7_1:7650719-7650738 None:intergenic 40.0%
GCAAATCTGGATGCATTTGT+TGG + chr7_1:7650734-7650753 None:intergenic 40.0%
TGACAAAGTGAGCCATGTTG+TGG - chr7_1:7647207-7647226 Msa1007900:three_prime_UTR 45.0%
GGATGTGAGTTTCCACAACA+TGG + chr7_1:7647222-7647241 None:intergenic 45.0%
CAATGAGACACTATCTGCCA+TGG - chr7_1:7647255-7647274 Msa1007900:CDS 45.0%
ACACTATCTGCCATGGTACT+AGG - chr7_1:7647262-7647281 Msa1007900:CDS 45.0%
CAAATTGGCACCTAGTACCA+TGG + chr7_1:7647275-7647294 None:intergenic 45.0%
CATGGTACTAGGTGCCAATT+TGG - chr7_1:7647273-7647292 Msa1007900:CDS 45.0%
!! GGCAAATCAGAGTGTTGAGT+TGG + chr7_1:7647394-7647413 None:intergenic 45.0%
AACATACGGTCAAGCCGATT+CGG + chr7_1:7647415-7647434 None:intergenic 45.0%
TTGCAAGCAAGCGCAACATA+CGG + chr7_1:7647429-7647448 None:intergenic 45.0%
TCTACTCGGACCAATGATGA+TGG - chr7_1:7647469-7647488 Msa1007900:CDS 45.0%
! GTTTTTGCGATCACACCTTC+TGG - chr7_1:7647505-7647524 Msa1007900:CDS 45.0%
ATGTGTCACCCTGCTTTGAT+AGG - chr7_1:7647589-7647608 Msa1007900:intron 45.0%
TGTGTCACCCTGCTTTGATA+GGG - chr7_1:7647590-7647609 Msa1007900:intron 45.0%
ACCACAACCCTATCAAAGCA+GGG + chr7_1:7647600-7647619 None:intergenic 45.0%
TACCACAACCCTATCAAAGC+AGG + chr7_1:7647601-7647620 None:intergenic 45.0%
GCATAATACATGCAGGAGTC+GGG + chr7_1:7648058-7648077 None:intergenic 45.0%
ACTAGTGAGCTTAGCTCAGT+TGG - chr7_1:7648299-7648318 Msa1007900:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr7_1:7648304-7648323 Msa1007900:intron 45.0%
GAAAATGCATCACCCATTCC+AGG - chr7_1:7649376-7649395 Msa1007900:intron 45.0%
CAAGGGAGCCCTAAATATTC+GGG + chr7_1:7650070-7650089 None:intergenic 45.0%
TTAGGGATTGAGCATGTTGG+AGG - chr7_1:7650417-7650436 Msa1007900:intron 45.0%
AGCATTATGGCATCTCCTTG+TGG + chr7_1:7650462-7650481 None:intergenic 45.0%
!! CTGGATGCATTTGTTGGTTC+TGG + chr7_1:7650728-7650747 None:intergenic 45.0%
!!! CATTTTTATAATATATTTAT+AGG - chr7_1:7649062-7649081 Msa1007900:intron 5.0%
!!! ATAAAAATTAAATTAATTTG+TGG + chr7_1:7649595-7649614 None:intergenic 5.0%
!! TTATAAATAAATAAACAAAT+AGG - chr7_1:7650898-7650917 Msa1007900:CDS 5.0%
ACCCTGCTTTGATAGGGTTG+TGG - chr7_1:7647596-7647615 Msa1007900:intron 50.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 7647154 7651003 7647154 ID=Msa1007900;Name=Msa1007900
chr7_1 mRNA 7647154 7651003 7647154 ID=Msa1007900-mRNA-1;Parent=Msa1007900;Name=Msa1007900-mRNA-1;_AED=0.27;_eAED=0.27;_QI=36|1|1|1|1|1|4|96|367
chr7_1 exon 7647154 7647546 7647154 ID=Msa1007900-mRNA-1:exon:2312;Parent=Msa1007900-mRNA-1
chr7_1 exon 7647672 7647736 7647672 ID=Msa1007900-mRNA-1:exon:2311;Parent=Msa1007900-mRNA-1
chr7_1 exon 7648760 7649073 7648760 ID=Msa1007900-mRNA-1:exon:2310;Parent=Msa1007900-mRNA-1
chr7_1 exon 7650540 7651003 7650540 ID=Msa1007900-mRNA-1:exon:2309;Parent=Msa1007900-mRNA-1
chr7_1 five_prime_UTR 7650968 7651003 7650968 ID=Msa1007900-mRNA-1:five_prime_utr;Parent=Msa1007900-mRNA-1
chr7_1 CDS 7650540 7650967 7650540 ID=Msa1007900-mRNA-1:cds;Parent=Msa1007900-mRNA-1
chr7_1 CDS 7648760 7649073 7648760 ID=Msa1007900-mRNA-1:cds;Parent=Msa1007900-mRNA-1
chr7_1 CDS 7647672 7647736 7647672 ID=Msa1007900-mRNA-1:cds;Parent=Msa1007900-mRNA-1
chr7_1 CDS 7647250 7647546 7647250 ID=Msa1007900-mRNA-1:cds;Parent=Msa1007900-mRNA-1
chr7_1 three_prime_UTR 7647154 7647249 7647154 ID=Msa1007900-mRNA-1:three_prime_utr;Parent=Msa1007900-mRNA-1
Gene Sequence

>Msa1007900

ATGAGTTCCTATTCCAATGACAAAGTGAGCCATGTTGTGGAAACTCACATCCCACAAATAGATGACAATGAGACACTATCTGCCATGGTACTAGGTGCCAATTTGGTGTTTCCAGCAGTTCTTAATGCTGCAATTCAACTCAACTTGTTTGAAATCATTGGTGATGGATTCATGTCATCTTTTGAAATTGCTTCAAAGTTACCAACTCAACACTCTGATTTGCCGAATCGGCTTGACCGTATGTTGCGCTTGCTTGCAAGCTACTCTCTTCTGTCTATTTCTACTCGGACCAATGATGATGGTAGCATTGTGAGAGTTTTTGCGATCACACCTTCTGGTAAATACTTTTGCTATGATGAAAATAGTGATCGTGGTTATGTTGGTTCCTTCACATCATTTATGTGTCACCCTGCTTTGATAGGGTTGTGGTTGAATTTCAAGGATGCAGTACTTGATCCAGAGATTGACCTATTCAAGAAAGTTAATGGAATAACTAAGTATGAGTACTTTGGGAAAGATCCACAAGTAAACCAAATATTCAACAAATCAATGACTAATATGACCAAAATTCACATGAAAAAAATCCTTGAAATATATAAAGGATATGAGGGAGTATCAACTTTGGTTGATATTGGAGGTGGAAATGGACAAACTCTCAAAATGATTATTGCAAAATATCCATCAATTAAGGGAATCAATTTTGACCTTCCTCAAGTGATTGAAAATGCATCACCCATTCCAGGGATTGAGCATGTTGGAGGAAGCATGTTTGAAAGTATTCCACAAGGAGATGCCATAATGCTTAAGGCTGTATGTCATAATTGGTCGGATGAAAAATGCTTAGAAATTTTTAGCAATTGTTACAAAGCTTTGCCTCAAAATGGAAAGGTGATTCTTGTGGAGCTTGCACTACCAGAATGTCCAGAACCAACAAATGCATCCAGATTTGCTTCAATTATTGATAATATCATGTTCATTAATGCTGGTGGAAAAGAAAGAACTGCTAAAGAATATGAAATTTTGGCTCAACAATCTGGATTTTCAAGACTTGAAGTTGTTTGTTGTGCTTTCTCCATTATTGGAGTGATGGAAATTTATAAATAA

Protein sequence

>Msa1007900

MSSYSNDKVSHVVETHIPQIDDNETLSAMVLGANLVFPAVLNAAIQLNLFEIIGDGFMSSFEIASKLPTQHSDLPNRLDRMLRLLASYSLLSISTRTNDDGSIVRVFAITPSGKYFCYDENSDRGYVGSFTSFMCHPALIGLWLNFKDAVLDPEIDLFKKVNGITKYEYFGKDPQVNQIFNKSMTNMTKIHMKKILEIYKGYEGVSTLVDIGGGNGQTLKMIIAKYPSIKGINFDLPQVIENASPIPGIEHVGGSMFESIPQGDAIMLKAVCHNWSDEKCLEIFSNCYKALPQNGKVILVELALPECPEPTNASRFASIIDNIMFINAGGKERTAKEYEILAQQSGFSRLEVVCCAFSIIGVMEIYK*