AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1211940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211940 MtrunA17_Chr4g0060811 98.098 368 7 0 1 368 1 368 0.0 743
Msa1211940 MtrunA17_Chr3g0092131 79.348 368 71 2 1 368 1 363 0.0 610
Msa1211940 MtrunA17_Chr5g0434621 46.707 334 176 2 8 341 6 337 3.66e-109 323
Msa1211940 MtrunA17_Chr2g0294301 44.340 318 168 7 29 341 37 350 6.95e-83 256
Msa1211940 MtrunA17_Chr4g0068441 45.141 319 166 6 28 341 36 350 3.83e-82 254
Msa1211940 MtrunA17_Chr4g0017431 40.705 312 179 5 29 337 33 341 2.59e-81 252
Msa1211940 MtrunA17_Chr2g0294311 42.945 326 169 6 29 341 34 355 4.59e-78 244
Msa1211940 MtrunA17_Chr8g0374101 40.683 322 180 8 29 341 39 358 6.85e-78 244
Msa1211940 MtrunA17_Chr3g0131321 38.608 316 187 5 29 339 36 349 8.67e-75 236
Msa1211940 MtrunA17_Chr3g0077571 37.425 334 202 5 4 337 9 335 1.55e-73 232
Msa1211940 MtrunA17_Chr5g0438621 37.243 341 205 8 7 343 11 346 2.81e-70 224
Msa1211940 MtrunA17_Chr1g0189901 34.821 336 215 4 8 341 12 345 7.01e-69 221
Msa1211940 MtrunA17_Chr7g0275001 36.873 339 207 5 9 342 5 341 2.12e-68 219
Msa1211940 MtrunA17_Chr1g0189931 37.143 315 194 4 29 341 34 346 2.45e-68 219
Msa1211940 MtrunA17_Chr8g0380041 37.283 346 202 9 1 337 1 340 3.92e-68 218
Msa1211940 MtrunA17_Chr7g0275011 35.799 338 213 4 7 342 14 349 4.90e-68 218
Msa1211940 MtrunA17_Chr2g0285061 34.718 337 208 8 6 337 13 342 1.20e-67 217
Msa1211940 MtrunA17_Chr7g0275021 36.508 315 196 4 29 341 36 348 5.38e-67 216
Msa1211940 MtrunA17_Chr4g0008851 36.232 345 213 6 1 341 7 348 1.50e-66 214
Msa1211940 MtrunA17_Chr3g0086641 36.218 312 192 5 29 337 40 347 5.38e-66 213
Msa1211940 MtrunA17_Chr3g0099151 33.645 321 198 7 29 340 89 403 1.64e-65 213
Msa1211940 MtrunA17_Chr1g0182811 35.484 341 212 7 6 342 14 350 2.30e-65 211
Msa1211940 MtrunA17_Chr5g0438631 37.304 319 191 7 30 343 31 345 3.55e-65 210
Msa1211940 MtrunA17_Chr7g0274991 36.825 315 195 4 29 341 35 347 7.53e-65 210
Msa1211940 MtrunA17_Chr3g0099161 31.563 339 224 4 7 340 72 407 9.34e-63 206
Msa1211940 MtrunA17_Chr3g0105401 33.718 347 223 6 1 343 2 345 1.46e-62 204
Msa1211940 MtrunA17_Chr5g0444401 31.507 365 230 6 1 357 1 353 3.78e-62 203
Msa1211940 MtrunA17_Chr6g0457921 35.072 345 214 7 3 341 4 344 6.70e-60 197
Msa1211940 MtrunA17_Chr3g0120861 35.016 317 198 7 30 342 41 353 2.82e-59 195
Msa1211940 MtrunA17_Chr1g0189891 36.047 344 207 7 1 341 5 338 3.58e-59 195
Msa1211940 MtrunA17_Chr3g0099231 29.070 344 237 4 1 340 2 342 1.02e-58 195
Msa1211940 MtrunA17_Chr3g0077581 39.623 318 177 12 29 337 38 349 1.92e-58 194
Msa1211940 MtrunA17_Chr5g0396511 33.119 311 204 3 29 337 48 356 4.08e-58 193
Msa1211940 MtrunA17_Chr2g0320671 33.754 317 202 6 29 341 32 344 3.82e-56 187
Msa1211940 MtrunA17_Chr1g0156921 32.288 319 210 5 29 344 44 359 4.08e-56 187
Msa1211940 MtrunA17_Chr1g0156911 32.609 322 210 6 29 347 39 356 1.69e-55 186
Msa1211940 MtrunA17_Chr7g0215961 32.059 340 211 6 7 341 10 334 6.87e-55 184
Msa1211940 MtrunA17_Chr8g0341001 33.623 345 213 10 6 341 10 347 8.85e-54 181
Msa1211940 MtrunA17_Chr5g0438641 31.534 352 226 10 1 342 1 347 1.33e-53 181
Msa1211940 MtrunA17_Chr3g0085881 38.585 311 174 9 29 337 35 330 6.00e-53 179
Msa1211940 MtrunA17_Chr1g0156931 32.177 317 207 6 31 344 45 356 1.71e-52 178
Msa1211940 MtrunA17_Chr8g0371481 32.188 320 204 7 31 343 45 358 2.56e-52 177
Msa1211940 MtrunA17_Chr8g0370951 31.014 345 222 6 29 366 33 368 3.43e-52 177
Msa1211940 MtrunA17_Chr2g0284921 37.658 316 176 11 29 337 36 337 4.04e-52 177
Msa1211940 MtrunA17_Chr8g0371491 32.602 319 207 7 29 343 38 352 5.60e-52 176
Msa1211940 MtrunA17_Chr3g0142921 31.661 319 212 5 29 344 38 353 7.95e-52 176
Msa1211940 MtrunA17_Chr5g0432101 33.233 331 205 9 30 349 36 361 1.17e-51 176
Msa1211940 MtrunA17_Chr5g0405821 32.797 311 201 7 31 336 47 354 3.11e-51 174
Msa1211940 MtrunA17_Chr5g0420811 33.333 345 204 10 1 337 6 332 3.90e-51 174
Msa1211940 MtrunA17_Chr2g0285001 38.871 319 169 11 29 337 35 337 4.39e-51 174
Msa1211940 MtrunA17_Chr2g0301641 33.230 322 197 7 29 340 45 358 6.04e-51 175
Msa1211940 MtrunA17_Chr8g0371471 31.546 317 209 7 31 343 45 357 7.00e-51 174
Msa1211940 MtrunA17_Chr2g0284951 38.245 319 166 12 29 337 35 332 1.60e-50 173
Msa1211940 MtrunA17_Chr3g0142941 31.975 319 209 7 31 345 51 365 3.23e-50 172
Msa1211940 MtrunA17_Chr1g0156891 31.776 321 209 6 29 344 45 360 5.71e-50 171
Msa1211940 MtrunA17_Chr1g0156901 31.348 319 212 6 29 344 52 366 7.64e-50 171
Msa1211940 MtrunA17_Chr8g0344941 31.909 351 216 9 3 340 15 355 1.06e-49 171
Msa1211940 MtrunA17_Chr2g0284991 34.211 380 222 14 1 364 1 368 1.07e-49 171
Msa1211940 MtrunA17_Chr3g0085231 34.395 314 186 8 29 338 33 330 2.12e-49 169
Msa1211940 MtrunA17_Chr4g0027521 34.375 320 199 7 29 341 29 344 2.21e-49 169
Msa1211940 MtrunA17_Chr2g0330781 34.385 317 197 9 31 341 35 346 2.42e-48 167
Msa1211940 MtrunA17_Chr8g0380031 35.093 322 174 10 29 338 86 384 4.55e-48 167
Msa1211940 MtrunA17_Chr5g0405831 31.546 317 208 8 30 341 46 358 5.08e-47 164
Msa1211940 MtrunA17_Chr4g0046151 32.110 327 203 10 29 341 38 359 6.46e-46 160
Msa1211940 MtrunA17_Chr2g0283191 28.696 345 227 10 3 332 12 352 1.13e-43 155
Msa1211940 MtrunA17_Chr8g0349341 29.012 324 208 7 26 340 36 346 4.90e-43 153
Msa1211940 MtrunA17_Chr8g0349321 29.907 321 203 7 26 337 36 343 6.56e-43 152
Msa1211940 MtrunA17_Chr8g0344931 30.460 348 213 8 7 337 4 339 2.46e-42 151
Msa1211940 MtrunA17_Chr5g0437421 30.368 326 200 7 29 338 34 348 3.13e-42 150
Msa1211940 MtrunA17_Chr2g0284941 35.443 316 168 10 29 340 35 318 1.84e-41 149
Msa1211940 MtrunA17_Chr8g0370981 29.722 360 194 11 29 337 46 397 2.66e-41 149
Msa1211940 MtrunA17_Chr1g0157001 28.280 343 222 7 32 363 41 370 5.36e-41 148
Msa1211940 MtrunA17_Chr6g0459921 33.478 230 144 6 119 342 119 345 9.58e-41 147
Msa1211940 MtrunA17_Chr6g0455661 32.906 234 144 6 115 342 230 456 1.27e-39 146
Msa1211940 MtrunA17_Chr6g0455661 51.087 92 40 3 29 120 33 119 6.20e-16 79.0
Msa1211940 MtrunA17_Chr8g0349301 29.371 286 184 6 26 307 36 307 2.56e-36 134
Msa1211940 MtrunA17_Chr8g0349331 29.560 318 172 7 29 337 37 311 2.72e-34 129
Msa1211940 MtrunA17_Chr4g0027571 32.407 216 136 5 132 341 3 214 1.53e-32 121
Msa1211940 MtrunA17_Chr7g0226911 25.743 404 221 14 6 361 9 381 7.00e-31 121
Msa1211940 MtrunA17_Chr8g0370961 28.821 229 150 5 119 341 6 227 1.22e-29 114
Msa1211940 MtrunA17_Chr1g0160101 27.568 370 212 15 6 340 23 371 7.84e-29 115
Msa1211940 MtrunA17_Chr7g0271551 29.326 341 201 11 21 341 29 349 8.03e-29 115
Msa1211940 MtrunA17_Chr8g0381581 26.260 377 223 13 4 344 18 375 8.04e-28 112
Msa1211940 MtrunA17_Chr7g0226931 25.450 389 220 13 6 341 12 383 4.59e-27 110
Msa1211940 MtrunA17_Chr2g0283481 27.933 358 226 14 7 342 27 374 6.64e-27 110
Msa1211940 MtrunA17_Chr5g0440501 23.853 218 158 2 128 337 10 227 1.10e-25 103
Msa1211940 MtrunA17_Chr7g0275291 24.862 362 232 11 6 341 13 360 1.95e-25 105
Msa1211940 MtrunA17_Chr6g0450731 27.879 330 201 11 31 342 37 347 2.48e-25 105
Msa1211940 MtrunA17_Chr7g0229581 36.620 142 83 3 205 341 8 147 2.75e-25 100
Msa1211940 MtrunA17_Chr3g0104821 26.176 340 212 13 29 342 46 372 3.07e-25 105
Msa1211940 MtrunA17_Chr1g0178931 26.220 328 204 12 29 343 39 341 1.24e-24 103
Msa1211940 MtrunA17_Chr4g0057991 27.463 335 208 12 29 342 41 361 1.80e-24 103
Msa1211940 MtrunA17_Chr7g0254461 25.723 346 210 12 29 341 45 376 3.56e-24 102
Msa1211940 MtrunA17_Chr2g0283501 25.886 367 237 13 7 347 13 370 1.22e-23 100
Msa1211940 MtrunA17_Chr1g0159971 27.479 353 202 15 22 340 43 375 3.95e-23 99.8
Msa1211940 MtrunA17_Chr2g0283531 28.443 334 209 13 29 341 33 357 4.69e-23 99.0
Msa1211940 MtrunA17_Chr6g0450721 25.543 368 223 13 1 341 1 344 7.30e-23 98.2
Msa1211940 MtrunA17_Chr3g0093031 28.453 362 210 15 29 363 32 371 8.30e-23 98.2
Msa1211940 MtrunA17_Chr7g0273101 27.405 343 205 12 29 341 31 359 1.23e-22 97.8
Msa1211940 MtrunA17_Chr2g0301581 27.171 357 203 15 29 362 36 358 2.36e-22 97.1
Msa1211940 MtrunA17_Chr3g0112821 28.011 357 213 14 29 363 32 366 2.65e-22 96.7
Msa1211940 MtrunA17_Chr7g0266061 26.087 322 207 12 29 340 44 344 6.82e-22 95.5
Msa1211940 MtrunA17_Chr1g0178941 25.749 334 206 11 29 343 42 352 9.56e-22 95.1
Msa1211940 MtrunA17_Chr2g0283511 29.217 332 207 14 32 342 36 360 1.18e-21 95.1
Msa1211940 MtrunA17_Chr7g0226941 26.879 346 199 11 31 341 37 363 1.23e-21 95.1
Msa1211940 MtrunA17_Chr8g0347751 25.581 344 211 13 29 341 38 367 1.45e-21 95.1
Msa1211940 MtrunA17_Chr1g0160031 25.000 300 193 8 67 341 74 366 4.66e-21 93.6
Msa1211940 MtrunA17_Chr3g0096551 26.882 372 211 15 29 362 31 379 5.49e-21 93.2
Msa1211940 MtrunA17_Chr1g0198351 25.714 315 199 10 29 332 45 335 9.57e-21 92.4
Msa1211940 MtrunA17_Chr6g0450701 27.083 336 205 14 31 341 43 363 1.02e-20 92.4
Msa1211940 MtrunA17_Chr2g0301541 26.611 357 205 15 29 362 36 358 1.10e-20 92.0
Msa1211940 MtrunA17_Chr4g0018571 37.857 140 84 2 205 341 31 170 1.18e-20 88.2
Msa1211940 MtrunA17_Chr2g0317271 26.048 334 205 13 29 342 32 343 1.31e-20 92.0
Msa1211940 MtrunA17_Chr0c01g0489581 26.048 334 205 13 29 342 32 343 1.82e-20 91.7
Msa1211940 MtrunA17_Chr0c01g0489571 26.048 334 205 13 29 342 32 343 2.02e-20 91.3
Msa1211940 MtrunA17_Chr1g0159981 26.246 301 188 10 67 340 81 374 2.38e-20 91.7
Msa1211940 MtrunA17_Chr1g0160011 26.158 367 231 14 1 340 13 366 2.87e-20 91.3
Msa1211940 MtrunA17_Chr1g0191461 24.870 386 223 15 1 343 1 362 4.38e-20 90.5
Msa1211940 MtrunA17_Chr1g0159991 23.901 364 237 11 4 340 14 364 6.38e-20 90.1
Msa1211940 MtrunA17_Chr1g0189921 39.062 128 76 2 3 130 7 132 7.37e-20 85.5
Msa1211940 MtrunA17_Chr6g0450711 26.100 341 202 11 31 341 126 446 1.04e-19 90.1
Msa1211940 MtrunA17_Chr1g0198381 24.684 316 202 11 29 332 4 295 2.27e-19 87.8
Msa1211940 MtrunA17_Chr2g0317261 25.449 334 207 13 29 342 32 343 2.89e-19 88.2
Msa1211940 MtrunA17_Chr7g0229591 33.758 157 101 3 29 184 32 186 1.25e-17 80.9
Msa1211940 MtrunA17_Chr1g0189911 29.688 128 88 2 216 341 1 128 2.21e-17 78.6
Msa1211940 MtrunA17_Chr6g0469521 35.878 131 81 2 195 322 22 152 3.29e-17 78.2
Msa1211940 MtrunA17_Chr8g0352901 24.706 340 213 10 31 341 32 357 5.05e-17 81.6
Msa1211940 MtrunA17_Chr8g0370971 45.833 96 47 3 29 120 40 134 6.27e-17 77.8
Msa1211940 MtrunA17_Chr2g0321991 37.405 131 71 4 1 129 6 127 1.07e-16 75.9
Msa1211940 MtrunA17_Chr2g0308211 34.109 129 81 2 78 204 19 145 9.01e-16 73.9
Msa1211940 MtrunA17_Chr3g0112691 25.691 362 218 15 29 363 32 369 1.82e-15 77.0
Msa1211940 MtrunA17_Chr7g0228261 41.538 65 38 0 278 342 11 75 2.15e-13 65.5
Msa1211940 MtrunA17_Chr2g0301551 24.430 307 183 12 77 362 36 314 3.59e-13 69.7
Msa1211940 MtrunA17_Chr2g0301571 23.776 286 178 10 77 342 36 301 3.59e-13 69.7
Msa1211940 MtrunA17_Chr1g0198391 23.810 357 199 10 29 345 35 358 1.58e-12 68.2
Msa1211940 MtrunA17_Chr6g0469511 36.283 113 70 2 29 141 32 142 4.60e-12 63.2
Msa1211940 MtrunA17_Chr4g0027581 28.859 149 77 5 220 341 41 187 5.38e-12 64.7
Msa1211940 MtrunA17_Chr3g0104831 23.864 264 165 11 105 342 38 291 1.43e-11 64.7
Msa1211940 MtrunA17_Chr5g0432081 38.806 67 37 1 287 349 10 76 2.96e-11 58.9
Msa1211940 MtrunA17_Chr8g0339251 25.271 277 178 9 31 296 32 290 3.61e-11 63.9
Msa1211940 MtrunA17_Chr2g0285041 32.203 118 76 3 89 204 9 124 9.09e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211940 AT1G74460.1 68.108 370 111 3 1 368 1 365 0.0 528
Msa1211940 AT5G37690.1 45.161 341 185 2 1 341 1 339 1.95e-107 319
Msa1211940 AT5G37690.2 43.402 341 183 3 1 341 1 331 1.01e-99 299
Msa1211940 AT3G50400.1 41.615 322 178 7 29 341 36 356 8.75e-80 249
Msa1211940 AT5G15720.1 42.056 321 176 6 29 343 32 348 8.72e-78 244
Msa1211940 AT5G08460.1 40.823 316 179 5 28 337 50 363 1.47e-77 244
Msa1211940 AT2G23540.1 39.875 321 184 6 29 341 50 369 2.88e-76 241
Msa1211940 AT1G71250.1 36.950 341 203 6 8 339 16 353 4.60e-74 234
Msa1211940 AT5G41890.1 36.207 348 193 10 27 357 31 366 9.76e-71 226
Msa1211940 AT4G28780.1 36.095 338 212 3 6 341 10 345 1.28e-70 225
Msa1211940 AT1G71691.2 39.617 313 181 5 29 339 57 363 3.22e-70 225
Msa1211940 AT1G29660.1 37.982 337 198 8 7 337 10 341 1.17e-67 218
Msa1211940 AT1G33811.1 37.322 351 197 9 6 337 3 349 4.03e-67 216
Msa1211940 AT1G29670.1 36.657 341 203 9 4 337 6 340 4.78e-67 216
Msa1211940 AT3G04290.1 37.143 315 194 4 29 341 31 343 5.85e-67 216
Msa1211940 AT1G29670.2 36.550 342 204 9 3 337 73 408 4.86e-66 215
Msa1211940 AT5G33370.1 34.921 315 201 4 29 341 32 344 7.54e-63 205
Msa1211940 AT5G45670.1 35.737 319 197 7 29 343 31 345 4.69e-62 203
Msa1211940 AT4G18970.1 34.169 319 202 6 29 343 30 344 1.34e-61 202
Msa1211940 AT5G18430.1 35.647 317 198 5 29 341 30 344 1.74e-61 201
Msa1211940 AT5G15720.3 39.483 271 157 4 79 343 48 317 2.95e-61 200
Msa1211940 AT4G18970.2 34.169 319 202 6 29 343 30 344 1.02e-60 201
Msa1211940 AT4G10950.2 32.484 314 208 3 29 340 73 384 8.00e-60 198
Msa1211940 AT2G04570.1 32.941 340 218 8 6 341 9 342 5.58e-58 192
Msa1211940 AT3G14820.1 35.737 319 193 8 30 344 35 345 1.15e-57 191
Msa1211940 AT4G26790.1 35.061 328 203 8 20 342 22 344 1.29e-57 191
Msa1211940 AT4G26790.2 35.061 328 203 8 20 342 22 344 1.29e-57 191
Msa1211940 AT5G42170.1 33.333 318 201 7 31 344 54 364 5.78e-57 190
Msa1211940 AT2G42990.1 34.513 339 213 8 10 343 10 344 6.34e-57 189
Msa1211940 AT4G10950.1 32.484 314 204 4 29 340 73 380 1.27e-56 190
Msa1211940 AT1G71691.1 35.985 264 163 3 78 339 3 262 8.66e-56 184
Msa1211940 AT5G55050.1 34.421 337 204 8 18 341 26 358 8.94e-56 187
Msa1211940 AT5G15720.2 41.509 265 145 6 29 287 32 292 9.80e-56 185
Msa1211940 AT1G58430.1 33.438 320 205 6 29 343 37 353 3.75e-55 185
Msa1211940 AT1G75890.2 32.602 319 208 6 30 344 50 365 2.34e-54 183
Msa1211940 AT2G30220.1 32.063 315 206 6 29 338 35 346 2.63e-54 183
Msa1211940 AT1G75890.3 32.602 319 208 6 30 344 79 394 5.57e-54 183
Msa1211940 AT1G75890.1 32.326 331 206 8 30 344 50 378 1.13e-53 182
Msa1211940 AT2G19060.1 33.754 317 182 12 29 336 32 329 1.90e-52 177
Msa1211940 AT2G30310.1 31.013 316 208 7 29 338 36 347 7.85e-52 176
Msa1211940 AT1G59406.1 32.288 319 205 6 30 344 33 344 2.56e-51 175
Msa1211940 AT1G59030.1 32.288 319 205 6 30 344 33 344 2.56e-51 175
Msa1211940 AT1G58725.1 32.288 319 205 6 30 344 33 344 2.56e-51 175
Msa1211940 AT2G31540.1 31.962 316 207 6 30 340 38 350 2.72e-51 175
Msa1211940 AT1G71691.3 39.847 261 149 5 29 287 57 311 7.10e-51 172
Msa1211940 AT1G20120.1 31.562 320 207 8 29 342 80 393 9.35e-51 175
Msa1211940 AT3G16370.1 34.356 326 202 10 31 350 34 353 2.55e-50 172
Msa1211940 AT5G03810.1 30.747 348 231 8 1 343 5 347 3.55e-50 172
Msa1211940 AT1G75880.1 31.975 319 210 6 30 344 55 370 1.80e-49 171
Msa1211940 AT5G22810.1 33.642 324 196 10 29 341 36 351 2.67e-49 170
Msa1211940 AT4G16230.1 41.150 226 127 4 5 228 9 230 3.63e-49 166
Msa1211940 AT2G24560.1 31.013 316 210 6 30 340 37 349 4.92e-49 169
Msa1211940 AT1G75900.1 32.500 320 203 8 31 344 47 359 6.22e-49 169
Msa1211940 AT2G19010.1 34.494 316 181 11 29 337 32 328 6.52e-49 168
Msa1211940 AT2G19010.2 34.494 316 181 11 29 337 62 358 2.16e-48 168
Msa1211940 AT1G75880.2 32.288 319 208 7 30 344 55 369 2.56e-48 167
Msa1211940 AT5G45950.1 32.166 314 205 7 29 341 42 348 2.79e-48 167
Msa1211940 AT2G19050.1 34.185 313 186 11 29 337 33 329 1.37e-47 165
Msa1211940 AT1G58520.3 31.975 319 199 7 30 344 33 337 2.66e-47 164
Msa1211940 AT1G58525.1 31.975 319 199 7 30 344 33 337 2.66e-47 164
Msa1211940 AT1G06990.1 29.296 355 227 9 8 343 5 354 4.54e-47 164
Msa1211940 AT5G03820.1 32.915 319 202 9 30 341 36 349 7.47e-47 163
Msa1211940 AT5G45960.1 31.661 319 204 8 23 332 43 356 7.75e-47 164
Msa1211940 AT2G40250.1 31.692 325 208 6 29 344 38 357 8.74e-47 163
Msa1211940 AT5G03820.2 32.915 319 202 9 30 341 64 377 1.96e-46 163
Msa1211940 AT2G03980.2 32.808 317 195 8 29 337 45 351 2.01e-46 162
Msa1211940 AT2G03980.3 32.808 317 195 8 29 337 45 351 2.01e-46 162
Msa1211940 AT2G03980.1 32.808 317 195 8 29 337 45 351 2.01e-46 162
Msa1211940 AT2G03980.4 32.808 317 195 8 29 337 45 351 2.01e-46 162
Msa1211940 AT1G71120.1 30.408 319 203 8 29 340 33 339 7.17e-46 160
Msa1211940 AT5G33370.2 34.483 261 167 4 29 287 32 290 1.99e-45 159
Msa1211940 AT1G20132.1 31.790 324 205 9 29 344 63 378 2.50e-45 160
Msa1211940 AT3G53100.1 32.075 318 208 7 30 343 32 345 2.72e-45 159
Msa1211940 AT4G30140.1 33.861 316 183 12 29 338 35 330 4.62e-45 158
Msa1211940 AT1G53920.1 29.560 318 208 7 29 338 50 359 2.04e-43 155
Msa1211940 AT3G43570.1 29.747 316 188 7 30 344 33 315 5.40e-43 152
Msa1211940 AT3G14225.2 30.864 324 205 7 29 341 39 354 2.51e-42 152
Msa1211940 AT3G14225.1 30.982 326 206 7 29 341 39 358 3.54e-42 151
Msa1211940 AT1G20135.1 29.341 334 220 7 5 336 7 326 1.57e-40 145
Msa1211940 AT1G73610.1 31.861 317 199 7 29 343 37 338 2.97e-40 145
Msa1211940 AT5G40990.1 30.028 363 223 11 1 341 1 354 3.31e-40 146
Msa1211940 AT5G63170.1 30.909 330 206 10 7 332 10 321 5.82e-40 144
Msa1211940 AT1G20130.2 30.395 329 210 10 29 344 186 508 1.31e-39 147
Msa1211940 AT1G20130.1 30.395 329 210 10 29 344 206 528 1.44e-39 147
Msa1211940 AT1G53990.1 29.379 354 217 9 6 341 7 345 1.59e-38 141
Msa1211940 AT2G19050.2 35.887 248 145 8 29 273 33 269 1.22e-37 137
Msa1211940 AT1G75920.2 28.349 321 204 7 31 342 33 336 2.82e-37 137
Msa1211940 AT1G53940.2 29.012 324 211 7 29 341 41 356 5.12e-37 137
Msa1211940 AT2G24560.2 31.295 278 181 7 29 301 36 308 1.45e-36 135
Msa1211940 AT1G23500.1 31.385 325 189 10 29 342 37 338 2.64e-36 135
Msa1211940 AT3G43550.1 31.418 261 169 5 30 287 33 286 1.47e-34 129
Msa1211940 AT1G75920.1 27.381 336 203 8 31 342 28 346 3.06e-34 129
Msa1211940 AT1G75920.4 27.365 296 190 6 56 342 29 308 5.96e-33 125
Msa1211940 AT1G75930.1 29.938 324 197 12 29 341 31 335 1.04e-32 125
Msa1211940 AT1G54030.1 27.832 309 194 11 29 333 54 337 2.83e-32 125
Msa1211940 AT1G75910.1 26.266 316 218 5 31 342 32 336 9.97e-31 120
Msa1211940 AT2G31550.1 29.524 210 143 3 135 340 1 209 1.79e-30 116
Msa1211940 AT2G04020.1 36.683 199 116 4 29 225 45 235 7.52e-29 113
Msa1211940 AT3G14220.1 29.375 320 199 11 27 338 32 332 7.55e-29 115
Msa1211940 AT2G04020.2 36.683 199 116 4 29 225 45 235 1.46e-28 114
Msa1211940 AT3G14210.1 28.267 329 199 13 26 340 35 340 1.46e-27 112
Msa1211940 AT1G75920.3 25.857 321 181 8 31 342 33 305 1.80e-27 110
Msa1211940 AT1G53940.1 28.409 264 177 5 29 287 41 297 2.48e-26 107
Msa1211940 AT2G27360.1 27.327 333 212 10 31 341 37 361 3.24e-26 108
Msa1211940 AT1G28580.1 29.080 337 200 13 31 341 41 364 1.38e-25 106
Msa1211940 AT1G09390.1 26.513 347 205 11 21 341 31 353 1.79e-25 106
Msa1211940 AT3G05180.1 28.161 348 196 12 29 341 38 366 2.41e-25 105
Msa1211940 AT3G27950.1 27.297 370 225 12 1 341 1 355 3.43e-25 105
Msa1211940 AT5G14450.1 25.341 367 234 11 3 341 17 371 7.50e-25 104
Msa1211940 AT3G48460.1 25.595 336 213 12 29 341 40 361 8.89e-25 104
Msa1211940 AT1G54010.1 25.000 348 223 12 3 341 21 339 1.31e-24 103
Msa1211940 AT1G54020.2 24.841 314 212 9 29 338 35 328 1.39e-24 103
Msa1211940 AT1G54790.3 25.886 367 224 14 9 341 10 362 1.64e-24 103
Msa1211940 AT1G54030.2 27.734 256 158 9 29 280 54 286 3.49e-24 101
Msa1211940 AT1G31550.2 27.327 333 212 10 31 342 40 363 8.07e-24 102
Msa1211940 AT3G62280.1 26.667 330 204 11 31 341 40 350 1.13e-23 100
Msa1211940 AT1G54000.1 24.058 345 234 10 6 341 14 339 1.21e-23 101
Msa1211940 AT4G16233.1 40.187 107 63 1 236 341 6 112 1.08e-22 92.8
Msa1211940 AT1G67830.1 26.420 352 210 12 22 340 26 361 1.54e-22 97.8
Msa1211940 AT1G56670.1 24.595 370 224 12 3 341 11 356 1.70e-22 97.8
Msa1211940 AT4G01130.1 25.201 373 229 14 2 341 10 365 2.21e-22 97.8
Msa1211940 AT1G28570.1 27.168 346 215 13 22 342 29 362 2.64e-22 97.4
Msa1211940 AT5G03610.1 24.920 313 205 9 29 330 45 338 6.68e-22 95.9
Msa1211940 AT1G28590.1 26.301 365 231 14 5 342 11 364 1.24e-21 95.9
Msa1211940 AT1G54790.1 25.852 352 199 13 29 341 33 361 2.27e-21 94.7
Msa1211940 AT3G26430.1 26.801 347 202 13 29 340 33 362 2.43e-21 94.7
Msa1211940 AT1G28610.2 27.066 351 208 14 23 342 25 358 2.98e-21 94.4
Msa1211940 AT1G28650.1 26.488 336 210 12 31 341 41 364 3.12e-21 94.4
Msa1211940 AT1G28660.1 24.590 366 235 13 4 341 10 362 1.17e-20 92.8
Msa1211940 AT1G28660.2 24.590 366 234 14 4 341 10 361 1.92e-20 92.0
Msa1211940 AT1G28600.1 24.850 334 217 10 31 341 35 357 4.82e-20 90.9
Msa1211940 AT5G45910.1 29.825 342 200 17 29 341 32 362 5.59e-20 90.5
Msa1211940 AT1G31550.1 26.426 333 212 11 31 342 40 360 1.29e-19 89.7
Msa1211940 AT1G28640.1 23.219 379 247 14 4 356 10 370 3.89e-19 88.2
Msa1211940 AT3G09930.2 24.615 325 216 8 29 342 41 347 1.60e-18 86.3
Msa1211940 AT3G09930.1 24.615 325 216 8 29 342 41 347 1.60e-18 86.3
Msa1211940 AT1G28670.1 23.077 364 244 12 4 341 10 363 1.95e-18 86.3
Msa1211940 AT4G16220.1 38.406 138 81 3 5 142 9 142 1.71e-17 81.6
Msa1211940 AT1G54020.1 22.692 260 179 8 83 338 1 242 1.08e-15 77.0
Msa1211940 AT1G54020.5 22.692 260 179 8 83 338 1 242 1.08e-15 77.0
Msa1211940 AT1G54020.3 22.692 260 179 8 83 338 1 242 1.08e-15 77.0
Msa1211940 AT3G14210.2 27.830 212 138 8 140 340 5 212 5.89e-15 74.7
Msa1211940 AT4G01130.2 25.246 305 193 11 2 287 10 298 8.25e-15 75.1
Msa1211940 AT1G54020.4 22.995 187 139 3 155 338 9 193 1.30e-14 73.2
Msa1211940 AT1G28580.2 26.502 283 172 11 83 341 13 283 2.68e-13 70.5
Msa1211940 AT4G01130.3 23.431 239 145 8 126 341 56 279 5.04e-13 69.3
Msa1211940 AT1G56670.2 24.437 311 185 10 3 287 11 297 1.47e-12 68.2
Msa1211940 AT3G62280.2 26.199 271 167 10 31 287 40 291 1.91e-12 67.8

Find 80 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAACTTATTAAGAAATT+TGG 0.099606 8_1:+71781554 Msa1211940:CDS
TATTATAGTAGCCATCATTT+TGG 0.216688 8_1:+71778882 Msa1211940:CDS
TACACTTTCTCGACAATTTC+CGG 0.223904 8_1:-71780696 None:intergenic
TTAGAAGCAAAATTGGAAAA+AGG 0.224651 8_1:+71780290 Msa1211940:CDS
GAACTAATTAGAAGCAAAAT+TGG 0.258541 8_1:+71780283 Msa1211940:CDS
GACTCACCCTGTTGTTCCTT+TGG 0.261203 8_1:+71781416 Msa1211940:CDS
ACAGAAGCAAATATGTGTTT+TGG 0.275454 8_1:+71781489 Msa1211940:CDS
ATCTTGAAGGATTAATCTTC+TGG 0.276009 8_1:-71781638 None:intergenic
GCTCAATATGTTGTTGCTTT+AGG 0.276115 8_1:+71780337 Msa1211940:CDS
GAGAAAGATATACTAATAAA+TGG 0.293441 8_1:+71780062 Msa1211940:CDS
AAGGTTGTGCAATTCATATT+TGG 0.300714 8_1:+71778931 Msa1211940:CDS
AAAGTTGACACTCACAAAAT+AGG 0.330676 8_1:-71780132 None:intergenic
ACTCACCCTGTTGTTCCTTT+GGG 0.333100 8_1:+71781417 Msa1211940:CDS
TGCCTCTTTACACTGATTCA+TGG 0.338743 8_1:+71780389 Msa1211940:CDS
ATATCTACTTACCGTACTTA+AGG 0.342425 8_1:-71780847 None:intergenic
CCAAATCTATAGTTTGAGTT+AGG 0.347883 8_1:-71780785 None:intergenic
CCTAACTCAAACTATAGATT+TGG 0.348307 8_1:+71780785 Msa1211940:CDS
ACCTTCATGGATTACTTGAT+AGG 0.372440 8_1:+71780427 Msa1211940:CDS
CGCACAGTTGCTGATATAAT+AGG 0.392444 8_1:+71779075 Msa1211940:CDS
CATATTTGGAGACTCTCTTT+CGG 0.399756 8_1:+71778945 Msa1211940:CDS
AACAGGGTGAGTCTGAGTTT+TGG 0.402399 8_1:-71781406 None:intergenic
AATGGATTGAACTATGCTTC+TGG 0.403982 8_1:+71780080 Msa1211940:CDS
AATTAACATGGAGTTTAGTA+AGG 0.407205 8_1:+71778852 None:intergenic
TATCTACTTACCGTACTTAA+GGG 0.412191 8_1:-71780846 None:intergenic
AATTCTCCCAAAGGAACAAC+AGG 0.412467 8_1:-71781423 None:intergenic
CCATTAGAGAACCTTCCATT+AGG 0.426371 8_1:-71779051 None:intergenic
ATGGTATAGACATGGGTAAT+GGG 0.431513 8_1:+71779025 Msa1211940:CDS
CAAAGGGTACTTACTACAAC+CGG 0.438934 8_1:+71780677 Msa1211940:CDS
ATACAATGATGAAACCTTCA+TGG 0.447803 8_1:+71780414 Msa1211940:CDS
AAACAAATTGAGTTGTTTCA+AGG 0.447844 8_1:+71780253 Msa1211940:CDS
GGAGACTCTCTTTCGGATGT+TGG 0.448034 8_1:+71778952 Msa1211940:CDS
GGCGGTATCTTGAATGAAAC+TGG 0.450851 8_1:+71780107 Msa1211940:CDS
ATGGGTAATGGGTTACCTAA+TGG 0.453961 8_1:+71779036 Msa1211940:CDS
TTGAACTATGCTTCTGGTGG+TGG 0.481430 8_1:+71780086 Msa1211940:CDS
TATGGTATAGACATGGGTAA+TGG 0.488782 8_1:+71779024 Msa1211940:CDS
CCTAATGGAAGGTTCTCTAA+TGG 0.489722 8_1:+71779051 Msa1211940:CDS
AACAAATTGAGTTGTTTCAA+GGG 0.493665 8_1:+71780254 Msa1211940:CDS
AACTATGCTTCTGGTGGTGG+CGG 0.499017 8_1:+71780089 Msa1211940:CDS
TGGGTTGCATTCCACTTCAA+AGG 0.501557 8_1:+71780660 Msa1211940:CDS
TAGCTCAGGCAAGCTTGCCT+TGG 0.502282 8_1:+71779001 Msa1211940:CDS
AAGGATTAATCTTCTGGAGA+TGG 0.505916 8_1:-71781632 None:intergenic
CAGGCAAGCTTGCCTTGGTA+TGG 0.506809 8_1:+71779006 Msa1211940:CDS
GTTAAAGATGTGTCTAGGAC+TGG 0.508135 8_1:-71780038 None:intergenic
GCTTGAAGGATGCCATTGTA+AGG 0.510195 8_1:+71778912 Msa1211940:CDS
GGGTTGCATTCCACTTCAAA+GGG 0.512126 8_1:+71780661 Msa1211940:CDS
ATTAGCAATCCCCTTAAGTA+CGG 0.515788 8_1:+71780836 Msa1211940:CDS
AACACTAAGAAGACAACTAA+AGG 0.515883 8_1:+71780450 Msa1211940:CDS
TACTTCATAGTTTAGGAGCA+AGG 0.520215 8_1:+71780609 Msa1211940:CDS
TGAAGTGGAATGCAACCCAT+TGG 0.525340 8_1:-71780656 None:intergenic
GGAGCAATAGCAGCAGGTGC+TGG 0.537282 8_1:-71781611 None:intergenic
TCTCAGTTAAAGATGTGTCT+AGG 0.537954 8_1:-71780043 None:intergenic
GTCCATGAATCAGTGTAAAG+AGG 0.544547 8_1:-71780391 None:intergenic
AAGCCCAATACCCAAAATGA+TGG 0.546627 8_1:-71778893 None:intergenic
TCCTATCAAGTAATCCATGA+AGG 0.551770 8_1:-71780428 None:intergenic
ATAGCAGCAGGTGCTGGTGA+AGG 0.556239 8_1:-71781605 None:intergenic
GGAGATGGAGCAATAGCAGC+AGG 0.561892 8_1:-71781617 None:intergenic
TGCTGGTCTAATTCTCCCAA+AGG 0.564566 8_1:-71781432 None:intergenic
TCTCTCTAGAAGCCTAGCTC+AGG 0.570010 8_1:+71778987 Msa1211940:CDS
GCCTTGGTATGGTATAGACA+TGG 0.570735 8_1:+71779017 Msa1211940:CDS
GAGCTCATTAGCACTGTCTG+AGG 0.573348 8_1:-71781525 None:intergenic
AAGCGATCTAATAGATGACT+TGG 0.575982 8_1:+71780751 Msa1211940:CDS
GTAGTAAGTACCCTTTGAAG+TGG 0.581219 8_1:-71780671 None:intergenic
AAGGCAAGCTTGCCTGAGCT+AGG 0.591810 8_1:-71778999 None:intergenic
AAAGATGTGTCTAGGACTGG+AGG 0.598576 8_1:-71780035 None:intergenic
AAGATGTGTCTAGGACTGGA+GGG 0.599327 8_1:-71780034 None:intergenic
GATGTGTCTAGGACTGGAGG+GGG 0.601710 8_1:-71780032 None:intergenic
ATCTACTTACCGTACTTAAG+GGG 0.602880 8_1:-71780845 None:intergenic
ATCAGACAAATTAATTAACA+TGG 0.603890 8_1:+71778840 None:intergenic
TCTGAGCACAGTGTTGATGC+AGG 0.603943 8_1:-71781467 None:intergenic
AGATGTGTCTAGGACTGGAG+GGG 0.611093 8_1:-71780033 None:intergenic
AGCTCATTAGCACTGTCTGA+GGG 0.611771 8_1:-71781524 None:intergenic
CCTTGGTATGGTATAGACAT+GGG 0.621837 8_1:+71779018 Msa1211940:CDS
CATTAGCACTGTCTGAGGGA+TGG 0.633071 8_1:-71781520 None:intergenic
TGAATTGCACAACCTTACAA+TGG 0.641191 8_1:-71778924 None:intergenic
GCAGGTACACATGTAAGTGC+TGG 0.643973 8_1:-71781449 None:intergenic
GTAATGGGTTACCTAATGGA+AGG 0.648858 8_1:+71779040 Msa1211940:CDS
GTGACAGTTTAGGCCTACCT+AGG 0.652728 8_1:+71780009 Msa1211940:CDS
CCCATGTCTATACCATACCA+AGG 0.684296 8_1:-71779018 None:intergenic
GGATTGAACTATGCTTCTGG+TGG 0.704487 8_1:+71780083 Msa1211940:CDS
ATTCTCCCAAAGGAACAACA+GGG 0.755132 8_1:-71781422 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTTTTTTTTTTTTG+AGG + chr8_1:71780535-71780554 Msa1211940:intron 10.0%
!!! ATAAAAATAGATTTTTGTCA+TGG - chr8_1:71779184-71779203 None:intergenic 15.0%
!! AATTAAAATAAGTTGTTTAG+CGG + chr8_1:71779366-71779385 Msa1211940:intron 15.0%
!!! GTCACTAATATTTATTTTAT+CGG + chr8_1:71781232-71781251 Msa1211940:intron 15.0%
!! AATGAACTTATTAAGAAATT+TGG + chr8_1:71781554-71781573 Msa1211940:CDS 15.0%
!!! TAGGTAATTTTTTCACTTAT+TGG + chr8_1:71779094-71779113 Msa1211940:intron 20.0%
!!! TAACTTCTAAAAATCATGAT+GGG - chr8_1:71779496-71779515 None:intergenic 20.0%
!!! AAAATAGTAAGCTTATGTTT+TGG - chr8_1:71779809-71779828 None:intergenic 20.0%
!! GAGAAAGATATACTAATAAA+TGG + chr8_1:71780062-71780081 Msa1211940:CDS 20.0%
!!! TACTTGCATTTTTTAATGTA+TGG - chr8_1:71780936-71780955 None:intergenic 20.0%
!! TTTCACCAAATTATCTTTAA+TGG + chr8_1:71781014-71781033 Msa1211940:intron 20.0%
!! TATTATAGTAGCCATCATTT+TGG + chr8_1:71778882-71778901 Msa1211940:CDS 25.0%
!! ATTATAGTAGCCATCATTTT+GGG + chr8_1:71778883-71778902 Msa1211940:CDS 25.0%
!! GTAACTTCTAAAAATCATGA+TGG - chr8_1:71779497-71779516 None:intergenic 25.0%
! AATCTACATTAGATTATGAG+AGG + chr8_1:71779539-71779558 Msa1211940:intron 25.0%
! TCAATAACCTTAAAAAGTCA+GGG - chr8_1:71779905-71779924 None:intergenic 25.0%
! ATCAATAACCTTAAAAAGTC+AGG - chr8_1:71779906-71779925 None:intergenic 25.0%
!! ATAGCAACACTGAAATATTT+TGG + chr8_1:71780183-71780202 Msa1211940:intron 25.0%
!! GTTTGTCTAGTGATAATTTT+TGG - chr8_1:71780237-71780256 None:intergenic 25.0%
!! AAACAAATTGAGTTGTTTCA+AGG + chr8_1:71780253-71780272 Msa1211940:CDS 25.0%
!! AACAAATTGAGTTGTTTCAA+GGG + chr8_1:71780254-71780273 Msa1211940:CDS 25.0%
! GAACTAATTAGAAGCAAAAT+TGG + chr8_1:71780283-71780302 Msa1211940:CDS 25.0%
! TTAGAAGCAAAATTGGAAAA+AGG + chr8_1:71780290-71780309 Msa1211940:CDS 25.0%
! TAGAAGCAAAATTGGAAAAA+GGG + chr8_1:71780291-71780310 Msa1211940:CDS 25.0%
!!! TTTTAGCTACTTCATAGTTT+AGG + chr8_1:71780602-71780621 Msa1211940:intron 25.0%
! GAGATCCATTAAAGATAATT+TGG - chr8_1:71781022-71781041 None:intergenic 25.0%
!!! AGTGACACATTTTTAACTAT+TGG - chr8_1:71781218-71781237 None:intergenic 25.0%
! ATTCAGCTACAAAATTATCT+AGG + chr8_1:71781297-71781316 Msa1211940:intron 25.0%
!!! CTAATCACATTTGTTTTGTA+GGG + chr8_1:71781381-71781400 Msa1211940:intron 25.0%
AAGGTTGTGCAATTCATATT+TGG + chr8_1:71778931-71778950 Msa1211940:CDS 30.0%
! AAAGTAAAGTGCTCTATGTT+TGG + chr8_1:71779248-71779267 Msa1211940:intron 30.0%
! GCATTTGTTAATGAAGTGTT+TGG + chr8_1:71779441-71779460 Msa1211940:intron 30.0%
! AATTTTTCACGACAGACATT+TGG + chr8_1:71779640-71779659 Msa1211940:intron 30.0%
AAATAGTAAGTTGTGTGCTT+AGG - chr8_1:71779689-71779708 None:intergenic 30.0%
! CATAGATCTTATGCATTTTC+AGG + chr8_1:71779987-71780006 Msa1211940:intron 30.0%
AAAGTTGACACTCACAAAAT+AGG - chr8_1:71780135-71780154 None:intergenic 30.0%
! AACTTTTCTACTGTGTCTTA+AGG + chr8_1:71780149-71780168 Msa1211940:intron 30.0%
! ACTTTTCTACTGTGTCTTAA+GGG + chr8_1:71780150-71780169 Msa1211940:intron 30.0%
ATACAATGATGAAACCTTCA+TGG + chr8_1:71780414-71780433 Msa1211940:CDS 30.0%
AACACTAAGAAGACAACTAA+AGG + chr8_1:71780450-71780469 Msa1211940:CDS 30.0%
! CCAAATCTATAGTTTGAGTT+AGG - chr8_1:71780788-71780807 None:intergenic 30.0%
CCTAACTCAAACTATAGATT+TGG + chr8_1:71780785-71780804 Msa1211940:CDS 30.0%
TATCTACTTACCGTACTTAA+GGG - chr8_1:71780849-71780868 None:intergenic 30.0%
ATATCTACTTACCGTACTTA+AGG - chr8_1:71780850-71780869 None:intergenic 30.0%
ACATGCATGACATGTAATAT+AGG + chr8_1:71780901-71780920 Msa1211940:intron 30.0%
!! GTTTTAGGCGCAAATATTTT+TGG + chr8_1:71781166-71781185 Msa1211940:intron 30.0%
!! AAAACGTGTCACTTAAAAGT+TGG + chr8_1:71781350-71781369 Msa1211940:intron 30.0%
CCTACAAAACAAATGTGATT+AGG - chr8_1:71781383-71781402 None:intergenic 30.0%
!!! CCTAATCACATTTGTTTTGT+AGG + chr8_1:71781380-71781399 Msa1211940:intron 30.0%
! ACAGAAGCAAATATGTGTTT+TGG + chr8_1:71781489-71781508 Msa1211940:CDS 30.0%
! CAGAAGCAAATATGTGTTTT+GGG + chr8_1:71781490-71781509 Msa1211940:CDS 30.0%
! AAATTTGGATTTTCACGTGA+CGG + chr8_1:71781569-71781588 Msa1211940:CDS 30.0%
!! TAGCCATCATTTTGGGTATT+GGG + chr8_1:71778890-71778909 Msa1211940:CDS 35.0%
TGAATTGCACAACCTTACAA+TGG - chr8_1:71778927-71778946 None:intergenic 35.0%
CATATTTGGAGACTCTCTTT+CGG + chr8_1:71778945-71778964 Msa1211940:CDS 35.0%
TATGGTATAGACATGGGTAA+TGG + chr8_1:71779024-71779043 Msa1211940:CDS 35.0%
ATGGTATAGACATGGGTAAT+GGG + chr8_1:71779025-71779044 Msa1211940:CDS 35.0%
CTCTATGTTTGGACTTTGTT+TGG + chr8_1:71779259-71779278 Msa1211940:intron 35.0%
! GTTAATGAAGTGTTTGGTTG+AGG + chr8_1:71779447-71779466 Msa1211940:intron 35.0%
TTGAGGATGAACAATGAGTT+TGG + chr8_1:71779464-71779483 Msa1211940:intron 35.0%
CTCAAAAGATCATCACATTG+AGG + chr8_1:71779564-71779583 Msa1211940:intron 35.0%
TTTCCACAATAGACAATGTC+CGG + chr8_1:71779764-71779783 Msa1211940:intron 35.0%
! GAATTAGCCCTGACTTTTTA+AGG + chr8_1:71779895-71779914 Msa1211940:intron 35.0%
CTAATTTCAAACCTGTTCAC+AGG - chr8_1:71779943-71779962 None:intergenic 35.0%
TCTCAGTTAAAGATGTGTCT+AGG - chr8_1:71780046-71780065 None:intergenic 35.0%
!! AATGGATTGAACTATGCTTC+TGG + chr8_1:71780080-71780099 Msa1211940:CDS 35.0%
!! GCTCAATATGTTGTTGCTTT+AGG + chr8_1:71780337-71780356 Msa1211940:CDS 35.0%
! ACCTTCATGGATTACTTGAT+AGG + chr8_1:71780427-71780446 Msa1211940:CDS 35.0%
TCCTATCAAGTAATCCATGA+AGG - chr8_1:71780431-71780450 None:intergenic 35.0%
TACTTCATAGTTTAGGAGCA+AGG + chr8_1:71780609-71780628 Msa1211940:CDS 35.0%
!! CAAGGCAATTGATGCTTTTT+GGG + chr8_1:71780627-71780646 Msa1211940:CDS 35.0%
TACACTTTCTCGACAATTTC+CGG - chr8_1:71780699-71780718 None:intergenic 35.0%
AAGCGATCTAATAGATGACT+TGG + chr8_1:71780751-71780770 Msa1211940:CDS 35.0%
ATTAGCAATCCCCTTAAGTA+CGG + chr8_1:71780836-71780855 Msa1211940:CDS 35.0%
ATCTACTTACCGTACTTAAG+GGG - chr8_1:71780848-71780867 None:intergenic 35.0%
AAGTGTCAACAACATGGATT+TGG - chr8_1:71781103-71781122 None:intergenic 35.0%
TTGGTTAAGTGTCAACAACA+TGG - chr8_1:71781109-71781128 None:intergenic 35.0%
! GCGACAAAAACAAGAGTTTT+AGG + chr8_1:71781151-71781170 Msa1211940:intron 35.0%
!! GTAGCCATCATTTTGGGTAT+TGG + chr8_1:71778889-71778908 Msa1211940:CDS 40.0%
AAGCCCAATACCCAAAATGA+TGG - chr8_1:71778896-71778915 None:intergenic 40.0%
!!! ATTTTGGGTATTGGGCTTGA+AGG + chr8_1:71778898-71778917 Msa1211940:CDS 40.0%
CCTTGGTATGGTATAGACAT+GGG + chr8_1:71779018-71779037 Msa1211940:CDS 40.0%
!! ATGGGTAATGGGTTACCTAA+TGG + chr8_1:71779036-71779055 Msa1211940:CDS 40.0%
!! GTAATGGGTTACCTAATGGA+AGG + chr8_1:71779040-71779059 Msa1211940:CDS 40.0%
CCATTAGAGAACCTTCCATT+AGG - chr8_1:71779054-71779073 None:intergenic 40.0%
CCTAATGGAAGGTTCTCTAA+TGG + chr8_1:71779051-71779070 Msa1211940:CDS 40.0%
CGCACAGTTGCTGATATAAT+AGG + chr8_1:71779075-71779094 Msa1211940:CDS 40.0%
!! ATTATTTTGTGTCCGAGACG+CGG + chr8_1:71779397-71779416 Msa1211940:intron 40.0%
AGCAATCACACAAGTGAAGT+TGG + chr8_1:71779591-71779610 Msa1211940:intron 40.0%
! TTTTCACGACAGACATTTGG+CGG + chr8_1:71779643-71779662 Msa1211940:intron 40.0%
!! TTTTGGAGAGATTCGCTTAC+CGG - chr8_1:71779792-71779811 None:intergenic 40.0%
TTGTGAATCAACCTGTGAAC+AGG + chr8_1:71779929-71779948 Msa1211940:intron 40.0%
!!! GCATTTTCAGGTGACAGTTT+AGG + chr8_1:71779999-71780018 Msa1211940:intron 40.0%
! GTTAAAGATGTGTCTAGGAC+TGG - chr8_1:71780041-71780060 None:intergenic 40.0%
CAAAATTGGAAAAAGGGCTG+CGG + chr8_1:71780297-71780316 Msa1211940:CDS 40.0%
!! TGCCTCTTTACACTGATTCA+TGG + chr8_1:71780389-71780408 Msa1211940:CDS 40.0%
GTCCATGAATCAGTGTAAAG+AGG - chr8_1:71780394-71780413 None:intergenic 40.0%
! GCAAGGCAATTGATGCTTTT+TGG + chr8_1:71780626-71780645 Msa1211940:CDS 40.0%
!! CAATTGATGCTTTTTGGGCT+GGG + chr8_1:71780632-71780651 Msa1211940:CDS 40.0%
! GTAGTAAGTACCCTTTGAAG+TGG - chr8_1:71780674-71780693 None:intergenic 40.0%
!! CAAAGGGTACTTACTACAAC+CGG + chr8_1:71780677-71780696 Msa1211940:CDS 40.0%
ACCAAATGATGCTCATACCA+AGG + chr8_1:71781124-71781143 Msa1211940:intron 40.0%
CCAAATGATGCTCATACCAA+GGG + chr8_1:71781125-71781144 Msa1211940:intron 40.0%
!!! TTGTTTTTGTCGCAAACCCT+TGG - chr8_1:71781144-71781163 None:intergenic 40.0%
ATTCTCCCAAAGGAACAACA+GGG - chr8_1:71781425-71781444 None:intergenic 40.0%
AATTCTCCCAAAGGAACAAC+AGG - chr8_1:71781426-71781445 None:intergenic 40.0%
GCTTGAAGGATGCCATTGTA+AGG + chr8_1:71778912-71778931 Msa1211940:CDS 45.0%
GCCTTGGTATGGTATAGACA+TGG + chr8_1:71779017-71779036 Msa1211940:CDS 45.0%
CCCATGTCTATACCATACCA+AGG - chr8_1:71779021-71779040 None:intergenic 45.0%
TTTGGAGAGATTCGCTTACC+GGG - chr8_1:71779791-71779810 None:intergenic 45.0%
! AAGATGTGTCTAGGACTGGA+GGG - chr8_1:71780037-71780056 None:intergenic 45.0%
! AAAGATGTGTCTAGGACTGG+AGG - chr8_1:71780038-71780057 None:intergenic 45.0%
GGATTGAACTATGCTTCTGG+TGG + chr8_1:71780083-71780102 Msa1211940:CDS 45.0%
TTGAACTATGCTTCTGGTGG+TGG + chr8_1:71780086-71780105 Msa1211940:CDS 45.0%
GGCGGTATCTTGAATGAAAC+TGG + chr8_1:71780107-71780126 Msa1211940:CDS 45.0%
!! GCAATTGATGCTTTTTGGGC+TGG + chr8_1:71780631-71780650 Msa1211940:CDS 45.0%
TGAAGTGGAATGCAACCCAT+TGG - chr8_1:71780659-71780678 None:intergenic 45.0%
TGGGTTGCATTCCACTTCAA+AGG + chr8_1:71780660-71780679 Msa1211940:CDS 45.0%
GGGTTGCATTCCACTTCAAA+GGG + chr8_1:71780661-71780680 Msa1211940:CDS 45.0%
CCCTTGGTATGAGCATCATT+TGG - chr8_1:71781128-71781147 None:intergenic 45.0%
! AACAGGGTGAGTCTGAGTTT+TGG - chr8_1:71781409-71781428 None:intergenic 45.0%
ACTCACCCTGTTGTTCCTTT+GGG + chr8_1:71781417-71781436 Msa1211940:CDS 45.0%
! TGCTGGTCTAATTCTCCCAA+AGG - chr8_1:71781435-71781454 None:intergenic 45.0%
AGCTCATTAGCACTGTCTGA+GGG - chr8_1:71781527-71781546 None:intergenic 45.0%
!!! ATATTTAAAATATAAATTTC+GGG - chr8_1:71781193-71781212 None:intergenic 5.0%
!!! CATATTTAAAATATAAATTT+CGG - chr8_1:71781194-71781213 None:intergenic 5.0%
GGAGACTCTCTTTCGGATGT+TGG + chr8_1:71778952-71778971 Msa1211940:CDS 50.0%
! TCTCTCTAGAAGCCTAGCTC+AGG + chr8_1:71778987-71779006 Msa1211940:CDS 50.0%
GGACCGGACATTGTCTATTG+TGG - chr8_1:71779770-71779789 None:intergenic 50.0%
CAATAGACAATGTCCGGTCC+CGG + chr8_1:71779770-71779789 Msa1211940:intron 50.0%
GTGACAGTTTAGGCCTACCT+AGG + chr8_1:71780009-71780028 Msa1211940:CDS 50.0%
! AGATGTGTCTAGGACTGGAG+GGG - chr8_1:71780036-71780055 None:intergenic 50.0%
!! AACTATGCTTCTGGTGGTGG+CGG + chr8_1:71780089-71780108 Msa1211940:CDS 50.0%
!! CTTTTTGGGCTGGGTCCAAT+GGG + chr8_1:71780641-71780660 Msa1211940:CDS 50.0%
GACTCACCCTGTTGTTCCTT+TGG + chr8_1:71781416-71781435 Msa1211940:CDS 50.0%
GCAGGTACACATGTAAGTGC+TGG - chr8_1:71781452-71781471 None:intergenic 50.0%
!! TCTGAGCACAGTGTTGATGC+AGG - chr8_1:71781470-71781489 None:intergenic 50.0%
CATTAGCACTGTCTGAGGGA+TGG - chr8_1:71781523-71781542 None:intergenic 50.0%
GAGCTCATTAGCACTGTCTG+AGG - chr8_1:71781528-71781547 None:intergenic 50.0%
AAGGCAAGCTTGCCTGAGCT+AGG - chr8_1:71779002-71779021 None:intergenic 55.0%
TAGCTCAGGCAAGCTTGCCT+TGG + chr8_1:71779001-71779020 Msa1211940:CDS 55.0%
CAGGCAAGCTTGCCTTGGTA+TGG + chr8_1:71779006-71779025 Msa1211940:CDS 55.0%
GCTTCTCAATTGCCGCGTCT+CGG - chr8_1:71779412-71779431 None:intergenic 55.0%
AGAGATTCGCTTACCGGGAC+CGG - chr8_1:71779786-71779805 None:intergenic 55.0%
! GATGTGTCTAGGACTGGAGG+GGG - chr8_1:71780035-71780054 None:intergenic 55.0%
!! GCTTTTTGGGCTGGGTCCAA+TGG + chr8_1:71780640-71780659 Msa1211940:CDS 55.0%
!! ATAGCAGCAGGTGCTGGTGA+AGG - chr8_1:71781608-71781627 None:intergenic 55.0%
GGAGATGGAGCAATAGCAGC+AGG - chr8_1:71781620-71781639 None:intergenic 55.0%
GGAGCAATAGCAGCAGGTGC+TGG - chr8_1:71781614-71781633 None:intergenic 60.0%
! TCTAGGACTGGAGGGGGCCT+AGG - chr8_1:71780029-71780048 None:intergenic 65.0%
GGACTGGAGGGGGCCTAGGT+AGG - chr8_1:71780025-71780044 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 71778855 71781649 71778855 ID=Msa1211940;Name=Msa1211940
chr8_1 mRNA 71778855 71781649 71778855 ID=Msa1211940-mRNA-1;Parent=Msa1211940;Name=Msa1211940-mRNA-1;_AED=0.12;_eAED=0.12;_QI=4|1|0.8|1|1|1|5|0|368
chr8_1 exon 71778855 71779096 71778855 ID=Msa1211940-mRNA-1:exon:24142;Parent=Msa1211940-mRNA-1
chr8_1 exon 71780009 71780139 71780009 ID=Msa1211940-mRNA-1:exon:24143;Parent=Msa1211940-mRNA-1
chr8_1 exon 71780232 71780471 71780232 ID=Msa1211940-mRNA-1:exon:24144;Parent=Msa1211940-mRNA-1
chr8_1 exon 71780608 71780857 71780608 ID=Msa1211940-mRNA-1:exon:24145;Parent=Msa1211940-mRNA-1
chr8_1 exon 71781402 71781649 71781402 ID=Msa1211940-mRNA-1:exon:24146;Parent=Msa1211940-mRNA-1
chr8_1 five_prime_UTR 71778855 71778858 71778855 ID=Msa1211940-mRNA-1:five_prime_utr;Parent=Msa1211940-mRNA-1
chr8_1 CDS 71778859 71779096 71778859 ID=Msa1211940-mRNA-1:cds;Parent=Msa1211940-mRNA-1
chr8_1 CDS 71780009 71780139 71780009 ID=Msa1211940-mRNA-1:cds;Parent=Msa1211940-mRNA-1
chr8_1 CDS 71780232 71780471 71780232 ID=Msa1211940-mRNA-1:cds;Parent=Msa1211940-mRNA-1
chr8_1 CDS 71780608 71780857 71780608 ID=Msa1211940-mRNA-1:cds;Parent=Msa1211940-mRNA-1
chr8_1 CDS 71781402 71781649 71781402 ID=Msa1211940-mRNA-1:cds;Parent=Msa1211940-mRNA-1
Gene Sequence

>Msa1211940

ATGGAGTTTAGTAAGGTGATAGTTATTATAGTAGCCATCATTTTGGGTATTGGGCTTGAAGGATGCCATTGTAAGGTTGTGCAATTCATATTTGGAGACTCTCTTTCGGATGTTGGAAACAACATGCATCTCTCTAGAAGCCTAGCTCAGGCAAGCTTGCCTTGGTATGGTATAGACATGGGTAATGGGTTACCTAATGGAAGGTTCTCTAATGGACGCACAGTTGCTGATATAATAGGTGACAGTTTAGGCCTACCTAGGCCCCCTCCAGTCCTAGACACATCTTTAACTGAGAAAGATATACTAATAAATGGATTGAACTATGCTTCTGGTGGTGGCGGTATCTTGAATGAAACTGGCACCTATTTTATCCAAAAATTATCACTAGACAAACAAATTGAGTTGTTTCAAGGGACACAAGAACTAATTAGAAGCAAAATTGGAAAAAGGGCTGCGGACAAATTCTTTAGAGAAGCTCAATATGTTGTTGCTTTAGGTAGCAATGACTTTATCAACAACTACTTGATGCCTCTTTACACTGATTCATGGACATACAATGATGAAACCTTCATGGATTACTTGATAGGAACACTAAGAAGACAACTAAAGCTACTTCATAGTTTAGGAGCAAGGCAATTGATGCTTTTTGGGCTGGGTCCAATGGGTTGCATTCCACTTCAAAGGGTACTTACTACAACCGGAAATTGTCGAGAAAGTGTAAACAAACTAGCTCTTAGCTTTAATAAAGCTTCAAGCGATCTAATAGATGACTTGGTGAAGCAACTTCCTAACTCAAACTATAGATTTGGAGATGCATATGATGTTGTCTCTGATTTGATTAGCAATCCCCTTAAGTACGGGTTCCAAAACTCAGACTCACCCTGTTGTTCCTTTGGGAGAATTAGACCAGCACTTACATGTGTACCTGCATCAACACTGTGCTCAGACAGAAGCAAATATGTGTTTTGGGACGAGTACCATCCCTCAGACAGTGCTAATGAGCTCATTGCAAATGAACTTATTAAGAAATTTGGATTTTCACGTGACGGTCAAAATGCTGCTCCTTCACCAGCACCTGCTGCTATTGCTCCATCTCCAGAAGATTAA

Protein sequence

>Msa1211940

MEFSKVIVIIVAIILGIGLEGCHCKVVQFIFGDSLSDVGNNMHLSRSLAQASLPWYGIDMGNGLPNGRFSNGRTVADIIGDSLGLPRPPPVLDTSLTEKDILINGLNYASGGGGILNETGTYFIQKLSLDKQIELFQGTQELIRSKIGKRAADKFFREAQYVVALGSNDFINNYLMPLYTDSWTYNDETFMDYLIGTLRRQLKLLHSLGARQLMLFGLGPMGCIPLQRVLTTTGNCRESVNKLALSFNKASSDLIDDLVKQLPNSNYRFGDAYDVVSDLISNPLKYGFQNSDSPCCSFGRIRPALTCVPASTLCSDRSKYVFWDEYHPSDSANELIANELIKKFGFSRDGQNAAPSPAPAAIAPSPED*