AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1136690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136690 MtrunA17_Chr7g0218181 94.823 367 18 1 1 366 1 367 0.0 723
Msa1136690 MtrunA17_Chr7g0218131 79.570 372 68 4 1 366 1 370 0.0 612
Msa1136690 MtrunA17_Chr7g0218211 73.713 369 91 3 3 366 2 369 0.0 574
Msa1136690 MtrunA17_Chr7g0218261 75.068 369 85 3 3 366 2 368 0.0 570
Msa1136690 MtrunA17_Chr7g0218301 69.681 376 103 4 1 366 1 375 0.0 534
Msa1136690 MtrunA17_Chr7g0218271 68.617 376 107 4 1 366 1 375 0.0 531
Msa1136690 MtrunA17_Chr2g0307521 67.116 371 109 4 1 366 1 363 0.0 516
Msa1136690 MtrunA17_Chr1g0200491 61.290 372 135 3 2 366 3 372 2.23e-170 479
Msa1136690 MtrunA17_Chr1g0163601 50.135 371 173 5 5 366 3 370 2.22e-131 380
Msa1136690 MtrunA17_Chr1g0163611 48.787 371 178 5 5 366 3 370 1.04e-129 376
Msa1136690 MtrunA17_Chr3g0085201 54.391 353 151 6 20 366 9 357 2.09e-125 365
Msa1136690 MtrunA17_Chr3g0085211 53.541 353 154 6 20 366 22 370 7.31e-124 361
Msa1136690 MtrunA17_Chr1g0163621 49.596 371 174 6 5 366 18 384 2.71e-122 358
Msa1136690 MtrunA17_Chr3g0128011 47.727 352 175 6 20 366 70 417 6.65e-108 322
Msa1136690 MtrunA17_Chr5g0448091 42.179 358 192 8 18 366 12 363 1.61e-94 286
Msa1136690 MtrunA17_Chr7g0276401 41.304 368 205 8 5 366 13 375 1.33e-91 279
Msa1136690 MtrunA17_Chr8g0367441 40.157 381 209 10 1 366 1 377 1.34e-91 279
Msa1136690 MtrunA17_Chr7g0276411 41.047 363 202 7 12 366 4 362 3.71e-88 270
Msa1136690 MtrunA17_Chr8g0367451 39.227 362 208 8 13 366 19 376 2.13e-85 263
Msa1136690 MtrunA17_Chr8g0367491 39.828 349 199 7 25 366 32 376 1.01e-83 259
Msa1136690 MtrunA17_Chr8g0367501 39.296 341 196 6 34 366 28 365 8.60e-80 250
Msa1136690 MtrunA17_Chr8g0367381 41.049 324 161 9 18 333 25 326 1.23e-75 236
Msa1136690 MtrunA17_Chr8g0345851 42.456 285 151 6 88 366 13 290 4.94e-71 223
Msa1136690 MtrunA17_Chr2g0314271 37.391 345 197 10 12 347 2 336 2.13e-65 211
Msa1136690 MtrunA17_Chr3g0130011 36.158 354 202 9 25 366 17 358 9.01e-60 196
Msa1136690 MtrunA17_Chr3g0130061 35.799 338 196 8 25 351 17 344 5.90e-58 192
Msa1136690 MtrunA17_Chr3g0121301 33.750 320 196 9 38 351 38 347 2.35e-50 172
Msa1136690 MtrunA17_Chr6g0482291 44.865 185 92 3 183 366 1 176 3.03e-50 166
Msa1136690 MtrunA17_Chr4g0022021 33.333 321 197 10 40 352 44 355 1.59e-47 165
Msa1136690 MtrunA17_Chr1g0188371 30.508 354 214 11 19 350 2 345 6.42e-47 164
Msa1136690 MtrunA17_Chr4g0021981 41.000 200 112 5 157 352 158 355 1.32e-44 157
Msa1136690 MtrunA17_Chr1g0188391 30.000 320 211 6 40 351 33 347 1.66e-44 157
Msa1136690 MtrunA17_Chr5g0432251 29.167 312 203 9 64 365 55 358 1.00e-42 152
Msa1136690 MtrunA17_Chr4g0014561 31.487 343 207 10 39 365 32 362 5.38e-41 147
Msa1136690 MtrunA17_Chr4g0014681 31.195 343 208 10 39 365 32 362 4.36e-40 145
Msa1136690 MtrunA17_Chr7g0219161 27.304 293 202 5 65 354 62 346 5.01e-39 142
Msa1136690 MtrunA17_Chr5g0432301 28.617 311 208 8 61 365 57 359 8.32e-39 142
Msa1136690 MtrunA17_Chr5g0432241 28.912 294 198 6 77 365 72 359 1.11e-37 139
Msa1136690 MtrunA17_Chr7g0223241 29.268 287 179 9 80 360 73 341 1.15e-37 138
Msa1136690 MtrunA17_Chr4g0014641 30.029 343 212 10 39 365 32 362 1.88e-37 138
Msa1136690 MtrunA17_Chr4g0046361 29.179 329 218 8 33 352 26 348 5.13e-37 137
Msa1136690 MtrunA17_Chr7g0223231 29.304 273 173 8 80 346 73 331 6.10e-37 136
Msa1136690 MtrunA17_Chr4g0046531 26.706 337 228 7 37 365 392 717 2.80e-36 139
Msa1136690 MtrunA17_Chr4g0046531 27.554 323 216 7 37 351 30 342 4.11e-36 139
Msa1136690 MtrunA17_Chr7g0219141 26.048 334 229 8 40 365 33 356 5.04e-36 134
Msa1136690 MtrunA17_Chr4g0040621 35.714 196 122 2 161 352 161 356 9.39e-36 134
Msa1136690 MtrunA17_Chr8g0367401 50.909 110 54 0 160 269 2 111 1.46e-34 124
Msa1136690 MtrunA17_Chr5g0432211 31.489 235 155 3 136 365 111 344 3.52e-34 129
Msa1136690 MtrunA17_Chr4g0046341 29.226 349 220 9 33 365 26 363 5.24e-33 126
Msa1136690 MtrunA17_Chr6g0476581 71.111 90 21 3 1 85 1 90 5.62e-33 119
Msa1136690 MtrunA17_Chr1g0170941 69.737 76 23 0 191 266 1 76 1.35e-31 114
Msa1136690 MtrunA17_Chr5g0432261 33.929 168 107 2 201 365 160 326 9.96e-30 116
Msa1136690 MtrunA17_Chr4g0014661 28.060 335 221 9 40 365 33 356 1.16e-27 111
Msa1136690 MtrunA17_Chr4g0014591 28.024 339 218 11 39 365 32 356 2.17e-25 105
Msa1136690 MtrunA17_Chr8g0367461 45.217 115 57 3 255 366 1 112 3.50e-25 98.6
Msa1136690 MtrunA17_Chr1g0170931 46.552 116 53 2 25 133 6 119 4.63e-25 98.6
Msa1136690 MtrunA17_Chr8g0367421 41.818 110 47 1 160 269 2 94 1.44e-23 94.7
Msa1136690 MtrunA17_Chr8g0367391 42.991 107 59 2 261 366 29 134 1.83e-21 89.0
Msa1136690 MtrunA17_Chr4g0014601 27.731 238 157 7 39 271 32 259 2.02e-19 87.0
Msa1136690 MtrunA17_Chr7g0219171 33.582 134 82 4 236 365 117 247 6.72e-19 85.1
Msa1136690 MtrunA17_Chr8g0367471 47.297 74 39 0 183 256 1 74 4.61e-16 73.2
Msa1136690 MtrunA17_Chr1g0170951 44.286 70 39 0 277 346 17 86 1.43e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136690 AT5G54160.1 48.538 342 170 4 20 358 16 354 2.49e-111 329
Msa1136690 AT1G77520.1 39.437 355 200 8 24 366 30 381 3.47e-83 258
Msa1136690 AT1G51990.2 37.119 361 217 5 12 365 4 361 4.00e-82 254
Msa1136690 AT1G51990.1 36.842 361 218 5 12 365 4 361 4.79e-81 252
Msa1136690 AT1G33030.1 38.244 353 207 8 20 366 3 350 5.26e-78 244
Msa1136690 AT1G21100.1 41.880 351 183 10 20 356 21 364 1.91e-74 235
Msa1136690 AT1G63140.2 39.612 361 199 10 20 366 26 381 2.11e-74 235
Msa1136690 AT1G63140.4 39.612 361 199 10 20 366 46 401 2.71e-74 236
Msa1136690 AT1G21130.1 41.226 359 188 11 14 356 13 364 3.81e-73 232
Msa1136690 AT1G21110.1 41.595 351 184 10 20 356 21 364 1.11e-71 228
Msa1136690 AT5G53810.1 39.474 342 193 7 37 366 39 378 1.31e-71 228
Msa1136690 AT1G77530.1 38.873 355 202 9 24 366 30 381 1.80e-71 228
Msa1136690 AT1G21120.1 41.026 351 186 10 20 356 21 364 1.92e-70 225
Msa1136690 AT1G21120.2 41.026 351 186 10 20 356 69 412 9.26e-70 224
Msa1136690 AT1G76790.1 38.315 368 201 10 17 366 6 365 1.17e-67 218
Msa1136690 AT3G53140.1 34.857 350 203 8 12 346 1 340 6.59e-62 202
Msa1136690 AT1G62900.1 45.813 203 107 3 166 366 4 205 1.96e-57 186
Msa1136690 AT5G37170.1 35.404 322 161 10 56 366 49 334 8.06e-54 181
Msa1136690 AT5G37170.2 43.500 200 105 5 172 366 38 234 3.64e-51 171
Msa1136690 AT1G33030.3 36.576 257 154 6 20 271 3 255 3.50e-49 167
Msa1136690 AT5G37170.3 43.386 189 99 5 183 366 1 186 5.21e-48 161
Msa1136690 AT1G33030.2 36.614 254 152 6 20 268 3 252 5.80e-48 163
Msa1136690 AT1G21130.2 40.824 267 141 8 14 268 13 274 3.10e-44 154
Msa1136690 AT1G63140.1 38.697 261 144 7 20 268 46 302 2.18e-43 152
Msa1136690 AT4G35150.1 34.951 206 124 3 156 351 105 310 9.03e-39 141
Msa1136690 AT4G35160.1 31.722 331 202 10 38 351 44 367 6.97e-38 140
Msa1136690 AT1G77530.2 37.179 234 135 6 24 247 30 261 4.22e-34 127
Msa1136690 AT1G63140.3 37.021 235 132 7 20 242 46 276 1.30e-32 124

Find 70 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAATATCCATCAATTA+AGG 0.143550 7_4:-5394326 Msa1136690:CDS
TGCTAAAGAATATGAAATTT+TGG 0.154985 7_4:-5392842 Msa1136690:CDS
TCATTGATTTGTTGAATATT+TGG 0.166485 7_4:+5394464 None:intergenic
TGTTGTGCTTTCTCCATTAT+TGG 0.201075 7_4:-5392784 Msa1136690:CDS
GACCTATTCAAGAAAGTTAA+TGG 0.210657 7_4:-5394529 Msa1136690:CDS
TACAAAGCTTTGCCTCAAAA+TGG 0.249404 7_4:-5392982 Msa1136690:CDS
CTGGATGCATTTGTTGGTTC+TGG 0.263376 7_4:+5392922 None:intergenic
CTCAACTTGTTTGAAATCAT+TGG 0.292345 7_4:-5396285 Msa1136690:CDS
GTATCAACTTTGGTTGATAT+TGG 0.295454 7_4:-5394382 Msa1136690:CDS
ATGTGTCACCCTGCTTTGAT+AGG 0.308455 7_4:-5396024 Msa1136690:CDS
TTATAAATAAATAAACAAAT+AGG 0.310244 7_4:-5392749 Msa1136690:exon
TTTGTTGGTTCTGGACATTC+TGG 0.311438 7_4:+5392931 None:intergenic
CATATCCTTTATATATTTCA+AGG 0.318200 7_4:+5394410 None:intergenic
ATCAATAATTGAAGCAAATC+TGG 0.319009 7_4:+5392903 None:intergenic
GTTCACTTTGTCATTGGAAT+AGG 0.323507 7_4:+5396413 None:intergenic
AAATTGATTCCCTTAATTGA+TGG 0.325335 7_4:+5394316 None:intergenic
GATACCAACCTTAAGCATTA+TGG 0.328993 7_4:+5393175 None:intergenic
TTCCATTAACTTTCTTGAAT+AGG 0.343440 7_4:+5394527 None:intergenic
AATTTCCATCACTCCAATAA+TGG 0.352953 7_4:+5392771 None:intergenic
AACATGGTTCACTTTGTCAT+TGG 0.361884 7_4:+5396407 None:intergenic
AACTGCTGGAAACACCAAAT+TGG 0.362727 7_4:+5396326 None:intergenic
TCTAGGCTGTATGTCATAAT+TGG 0.366231 7_4:-5393041 Msa1136690:intron
CATGGTACTAGGTGCCAATT+TGG 0.366934 7_4:-5396340 Msa1136690:CDS
AAAATCCTTGAAATATATAA+AGG 0.371676 7_4:-5394415 Msa1136690:CDS
TAACTAAGTATGAGTACTTT+GGG 0.380596 7_4:-5394504 Msa1136690:CDS
GCAAAATATCCATCAATTAA+GGG 0.391669 7_4:-5394325 Msa1136690:CDS
GTCTCATTGTCATCTATTTG+TGG 0.392413 7_4:+5396372 None:intergenic
TATTTATAGGTTGAATTTCA+AGG 0.403327 7_4:-5394575 Msa1136690:intron
GTTGATATTGGAGGTGGAAA+TGG 0.403826 7_4:-5394370 Msa1136690:CDS
AACACTCTGATTTGCCGAAT+CGG 0.420138 7_4:-5396215 Msa1136690:CDS
AACATACGGTCGAGCCGATT+CGG 0.429332 7_4:+5396201 None:intergenic
TTCTTGAATAGGTCAATCTC+TGG 0.434820 7_4:+5394538 None:intergenic
TGAAATATATAAAGGATATG+AGG 0.436772 7_4:-5394407 Msa1136690:CDS
ACACTCTCTGCCATGGTACT+AGG 0.442707 7_4:-5396351 Msa1136690:CDS
CTCTTCTGTCTATTTCTACT+CGG 0.445033 7_4:-5396158 Msa1136690:CDS
TTGAATATTTGGTTTACTTG+TGG 0.449932 7_4:+5394475 None:intergenic
ATAACTAAGTATGAGTACTT+TGG 0.451042 7_4:-5394505 Msa1136690:CDS
AGGAGATGCCATAATGCTTA+AGG 0.462667 7_4:-5393183 Msa1136690:intron
ATTGCAGCATTAAGAACTGC+TGG 0.480012 7_4:+5396312 None:intergenic
CACAATGCTACCATCATCAT+TGG 0.482440 7_4:+5396134 None:intergenic
GAAAATGCATCACCCATTCC+AGG 0.488403 7_4:-5394274 Msa1136690:intron
ACTTTGGTTGATATTGGAGG+TGG 0.490275 7_4:-5394376 Msa1136690:CDS
CATTTAGGGATTGAGCATGT+TGG 0.508771 7_4:-5393233 Msa1136690:intron
TTGTTTGAAATCATTGGTGA+TGG 0.517050 7_4:-5396279 Msa1136690:CDS
TGTGTCACCCTGCTTTGATA+GGG 0.518341 7_4:-5396023 Msa1136690:CDS
TCAACTTTGGTTGATATTGG+AGG 0.519640 7_4:-5394379 Msa1136690:CDS
TACCACAACCCTATCAAAGC+AGG 0.522755 7_4:+5396015 None:intergenic
GCAAATCTGGATGCATTTGT+TGG 0.524259 7_4:+5392916 None:intergenic
ACCCTGCTTTGATAGGGTTG+TGG 0.524365 7_4:-5396017 Msa1136690:intron
CAAATTGGCACCTAGTACCA+TGG 0.530083 7_4:+5396341 None:intergenic
TTTCTCCATTATTGGAGTGA+TGG 0.540479 7_4:-5392776 Msa1136690:CDS
ATCATGTTCATTAATGCTGG+TGG 0.543605 7_4:-5392877 Msa1136690:CDS
TTGCAAGCAAGCGCAACATA+CGG 0.544131 7_4:+5396187 None:intergenic
AATAGTGATCATGGTTATGT+TGG 0.549478 7_4:-5396063 Msa1136690:CDS
TATGATGAAAATAGTGATCA+TGG 0.549928 7_4:-5396072 Msa1136690:CDS
GGCAAATCAGAGTGTTGAGT+TGG 0.551660 7_4:+5396222 None:intergenic
AGCATTATGGCATCTCCTTG+TGG 0.554368 7_4:+5393188 None:intergenic
AAATGGAAAGGTGATTCTTG+TGG 0.554848 7_4:-5392965 Msa1136690:CDS
AATATCATGTTCATTAATGC+TGG 0.556116 7_4:-5392880 Msa1136690:CDS
GAAATATATAAAGGATATGA+GGG 0.561483 7_4:-5394406 Msa1136690:CDS
GGCTGTATGTCATAATTGGT+CGG 0.563483 7_4:-5393037 Msa1136690:CDS
ATATGAGGGAGTATCAACTT+TGG 0.569528 7_4:-5394392 Msa1136690:CDS
TTAGGGATTGAGCATGTTGG+AGG 0.570708 7_4:-5393230 Msa1136690:intron
TAGCAAAAGTATTTACCAGA+AGG 0.577256 7_4:+5396093 None:intergenic
TCTACTCGGACCAATGATGA+TGG 0.584557 7_4:-5396144 Msa1136690:CDS
AGCTTTGCCTCAAAATGGAA+AGG 0.607753 7_4:-5392977 Msa1136690:CDS
CAATGAGACACTCTCTGCCA+TGG 0.626681 7_4:-5396358 Msa1136690:CDS
ACCACAACCCTATCAAAGCA+GGG 0.658650 7_4:+5396016 None:intergenic
GTGGAGTGTGAGTTTCAACA+TGG 0.690775 7_4:+5396391 None:intergenic
ATGTTTGAAAGTATTCCACA+AGG 0.713824 7_4:-5393203 Msa1136690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATTAAATTATA+TGG + chr7_4:5393327-5393346 None:intergenic 0.0%
!! ATGAAATAAATAATTAAACA+AGG + chr7_4:5393162-5393181 None:intergenic 10.0%
!! AATATAAACTTACAATTTAA+TGG - chr7_4:5393235-5393254 Msa1136690:intron 10.0%
!! TATATATATATCTTTATTAG+TGG - chr7_4:5393361-5393380 Msa1136690:intron 10.0%
!! ATATATATATCTTTATTAGT+GGG - chr7_4:5393362-5393381 Msa1136690:intron 10.0%
!!! ACTAGTTTTTTTTTTTTTTT+TGG + chr7_4:5393846-5393865 None:intergenic 10.0%
!!! GTTATAGTTTTTTTTAATTA+AGG + chr7_4:5394336-5394355 None:intergenic 10.0%
!! TTAAAAAAAACTATAACAAA+CGG - chr7_4:5394339-5394358 Msa1136690:CDS 10.0%
!! AAAGATAATTTAACTATTAA+CGG + chr7_4:5394464-5394483 None:intergenic 10.0%
!! AAGAAAAAAAAAATCAATAT+TGG + chr7_4:5394998-5395017 None:intergenic 10.0%
!!! ATATTGATTTTTTTTTTCTT+CGG - chr7_4:5394998-5395017 Msa1136690:intron 10.0%
!!! AGTTTTTTTTTTTTTTTTGG+TGG + chr7_4:5393843-5393862 None:intergenic 15.0%
!!! TGAATATAGCTTTTTTTTTA+TGG - chr7_4:5393905-5393924 Msa1136690:intron 15.0%
!! AAATGTAATACTAATAAGAA+AGG + chr7_4:5393959-5393978 None:intergenic 15.0%
!! TAAAAAAAACTATAACAAAC+GGG - chr7_4:5394340-5394359 Msa1136690:CDS 15.0%
!! AAAATCCTTGAAATATATAA+AGG - chr7_4:5394707-5394726 Msa1136690:intron 15.0%
!!! TTAATTTGATATCATCTAAA+AGG - chr7_4:5394919-5394938 Msa1136690:intron 15.0%
!!! TATTGATTTTTTTTTTCTTC+GGG - chr7_4:5394999-5395018 Msa1136690:intron 15.0%
!! TTTAAGTGAATTTGAAAAAT+TGG - chr7_4:5395264-5395283 Msa1136690:intron 15.0%
!! TTAAGTGAATTTGAAAAATT+GGG - chr7_4:5395265-5395284 Msa1136690:intron 15.0%
!!! ATTCAATTTTCTTACTAATA+CGG + chr7_4:5395341-5395360 None:intergenic 15.0%
!! TAAGAAAATTGAATATTGAA+CGG - chr7_4:5395347-5395366 Msa1136690:intron 15.0%
!!! ATATAATGTCTAACTATTTT+TGG - chr7_4:5395396-5395415 Msa1136690:intron 15.0%
!! TACAATATATTAGTTATCAA+GGG + chr7_4:5395562-5395581 None:intergenic 15.0%
!!! TTATTTTACTAAAATTAGTG+AGG - chr7_4:5395725-5395744 Msa1136690:intron 15.0%
!!! TATTTTACTAAAATTAGTGA+GGG - chr7_4:5395726-5395745 Msa1136690:intron 15.0%
!!! TATTTTCAATTCATAATCTT+GGG + chr7_4:5395860-5395879 None:intergenic 15.0%
!! AAAATAGACAAATTACATTT+AGG - chr7_4:5395874-5395893 Msa1136690:intron 15.0%
!! AAATAGACAAATTACATTTA+GGG - chr7_4:5395875-5395894 Msa1136690:intron 15.0%
!! TAAACAAGGTAAACAAAATT+AGG + chr7_4:5393148-5393167 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTTGGTGG+CGG + chr7_4:5393840-5393859 None:intergenic 20.0%
!!! AACAAATCATTTAGTTTGTT+TGG - chr7_4:5394147-5394166 Msa1136690:intron 20.0%
!!! TTTTAAAAAGCTCTAACAAA+CGG - chr7_4:5394266-5394285 Msa1136690:intron 20.0%
!! TTCTACCAAAATTAACTAAT+AGG - chr7_4:5394434-5394453 Msa1136690:CDS 20.0%
!!! TATTTATAGGTTGAATTTCA+AGG - chr7_4:5394547-5394566 Msa1136690:CDS 20.0%
!!! TCATTGATTTGTTGAATATT+TGG + chr7_4:5394661-5394680 None:intergenic 20.0%
!!! GATTTTTTTCATGTGAATTT+TGG + chr7_4:5394693-5394712 None:intergenic 20.0%
!! CATATCCTTTATATATTTCA+AGG + chr7_4:5394715-5394734 None:intergenic 20.0%
!! TGAAATATATAAAGGATATG+AGG - chr7_4:5394715-5394734 Msa1136690:intron 20.0%
!! GAAATATATAAAGGATATGA+GGG - chr7_4:5394716-5394735 Msa1136690:intron 20.0%
!!! ACTCATATAGCTAATTTTAT+TGG - chr7_4:5395179-5395198 Msa1136690:intron 20.0%
!!! TAGCTAATTTTATTGGTTTT+TGG - chr7_4:5395186-5395205 Msa1136690:intron 20.0%
!! AATTATCCACAATTATTCAA+AGG - chr7_4:5395211-5395230 Msa1136690:intron 20.0%
!!! TTCAATTTTCTTACTAATAC+GGG + chr7_4:5395340-5395359 None:intergenic 20.0%
!! GTACAATATATTAGTTATCA+AGG + chr7_4:5395563-5395582 None:intergenic 20.0%
!! AATATGAATCTGAAAATGAA+AGG - chr7_4:5395692-5395711 Msa1136690:intron 20.0%
!! ATATGAATCTGAAAATGAAA+GGG - chr7_4:5395693-5395712 Msa1136690:intron 20.0%
!! TGTTAAAATAATTGTTGAAC+TGG + chr7_4:5395835-5395854 None:intergenic 20.0%
!!! CTATTTTCAATTCATAATCT+TGG + chr7_4:5395861-5395880 None:intergenic 20.0%
!! TGTTAGAATGACATATAATT+TGG + chr7_4:5395986-5396005 None:intergenic 20.0%
!!! TGCTAAAGAATATGAAATTT+TGG - chr7_4:5396280-5396299 Msa1136690:CDS 20.0%
!! ATTCAACCAAAAATATAACA+AGG + chr7_4:5396414-5396433 None:intergenic 20.0%
! TATGATGAAAATAGTGATCA+TGG - chr7_4:5393050-5393069 Msa1136690:intron 25.0%
!!! TAGTTTGATAACATTTTGCT+TGG + chr7_4:5393466-5393485 None:intergenic 25.0%
!!! TCCTCTGATTTTATTTTTTC+CGG + chr7_4:5393697-5393716 None:intergenic 25.0%
! ACAATGCATAAAAATATGCA+AGG - chr7_4:5393800-5393819 Msa1136690:intron 25.0%
! AAAAAAAAGCTATATTCACG+AGG + chr7_4:5393903-5393922 None:intergenic 25.0%
!! ATCTATTTTGTGTTTGTTTG+CGG - chr7_4:5394103-5394122 Msa1136690:intron 25.0%
! TTGAAATGAGAGAGAAAATA+TGG + chr7_4:5394225-5394244 None:intergenic 25.0%
!! GAAAGCCTATTAGTTAATTT+TGG + chr7_4:5394442-5394461 None:intergenic 25.0%
! TTCCATTAACTTTCTTGAAT+AGG + chr7_4:5394598-5394617 None:intergenic 25.0%
! ATAACTAAGTATGAGTACTT+TGG - chr7_4:5394617-5394636 Msa1136690:intron 25.0%
! TAACTAAGTATGAGTACTTT+GGG - chr7_4:5394618-5394637 Msa1136690:intron 25.0%
!! TTGAATATTTGGTTTACTTG+TGG + chr7_4:5394650-5394669 None:intergenic 25.0%
! TGCAAAATATCCATCAATTA+AGG - chr7_4:5394796-5394815 Msa1136690:intron 25.0%
! GCAAAATATCCATCAATTAA+GGG - chr7_4:5394797-5394816 Msa1136690:intron 25.0%
!! AAATTGATTCCCTTAATTGA+TGG + chr7_4:5394809-5394828 None:intergenic 25.0%
!! CTCTTTTTCTTGAAATAACT+TGG - chr7_4:5394873-5394892 Msa1136690:intron 25.0%
!!! CTTGAAATAACTTGGTTTTA+CGG - chr7_4:5394881-5394900 Msa1136690:intron 25.0%
!!! TTGAAATAACTTGGTTTTAC+GGG - chr7_4:5394882-5394901 Msa1136690:intron 25.0%
! TTCGGGAAATTTGAAAAAAT+AGG - chr7_4:5395016-5395035 Msa1136690:intron 25.0%
!!! GTAGAGTAAAATTTAGTTTG+TGG - chr7_4:5395139-5395158 Msa1136690:intron 25.0%
! AATTAATTAAGGTAAGACCT+AGG + chr7_4:5395240-5395259 None:intergenic 25.0%
!! CTTTACCTTATAGATAGTTT+TGG - chr7_4:5395292-5395311 Msa1136690:intron 25.0%
! ATGTACCAAAACTATCTATA+AGG + chr7_4:5395300-5395319 None:intergenic 25.0%
!!! ACATGTGAGTTTTGTTTTTT+TGG + chr7_4:5395493-5395512 None:intergenic 25.0%
! AGTTTCAAGCACATATAATA+AGG + chr7_4:5395617-5395636 None:intergenic 25.0%
! GAATGTCATTCTAATATGTA+TGG + chr7_4:5395778-5395797 None:intergenic 25.0%
! ATCAATAATTGAAGCAAATC+TGG + chr7_4:5396222-5396241 None:intergenic 25.0%
! AATATCATGTTCATTAATGC+TGG - chr7_4:5396242-5396261 Msa1136690:CDS 25.0%
!!! CAGTTTCCTTGTTATATTTT+TGG - chr7_4:5396405-5396424 Msa1136690:CDS 25.0%
!!! GGAACTCATGTTTGTTTTTT+TGG + chr7_4:5392691-5392710 None:intergenic 30.0%
! CTCAACTTGTTTGAAATCAT+TGG - chr7_4:5392837-5392856 Msa1136690:CDS 30.0%
! TTGTTTGAAATCATTGGTGA+TGG - chr7_4:5392843-5392862 Msa1136690:CDS 30.0%
!! TAGCAAAAGTATTTACCAGA+AGG + chr7_4:5393032-5393051 None:intergenic 30.0%
AATAGTGATCATGGTTATGT+TGG - chr7_4:5393059-5393078 Msa1136690:intron 30.0%
AAGGTAAACAAAATTAGGCA+AGG + chr7_4:5393143-5393162 None:intergenic 30.0%
!!! ATTTTTTCCGGTGTCAATTT+CGG + chr7_4:5393685-5393704 None:intergenic 30.0%
ACCGGAAAAAATAAAATCAG+AGG - chr7_4:5393693-5393712 Msa1136690:intron 30.0%
AAAGTATAGCTATATTCACG+AGG + chr7_4:5393933-5393952 None:intergenic 30.0%
AATCATACGATGAAGAATCA+TGG + chr7_4:5393993-5394012 None:intergenic 30.0%
ATTCTTCATCGTATGATTCA+GGG - chr7_4:5393995-5394014 Msa1136690:intron 30.0%
GACCTATTCAAGAAAGTTAA+TGG - chr7_4:5394593-5394612 Msa1136690:intron 30.0%
! GTATCAACTTTGGTTGATAT+TGG - chr7_4:5394740-5394759 Msa1136690:intron 30.0%
!! ATTTCAAGAAAAAGAGTACC+TGG + chr7_4:5394869-5394888 None:intergenic 30.0%
AGGTTACCTTTGAATAATTG+TGG + chr7_4:5395220-5395239 None:intergenic 30.0%
CAATTATTCAAAGGTAACCT+AGG - chr7_4:5395220-5395239 Msa1136690:intron 30.0%
TGATATCCTAGAGGAAAAAT+GGG + chr7_4:5395585-5395604 None:intergenic 30.0%
TTGATATCCTAGAGGAAAAA+TGG + chr7_4:5395586-5395605 None:intergenic 30.0%
GAACTGGTCATTAATACAAA+GGG + chr7_4:5395819-5395838 None:intergenic 30.0%
TGAACTGGTCATTAATACAA+AGG + chr7_4:5395820-5395839 None:intergenic 30.0%
!! ATGTTTGAAAGTATTCCACA+AGG - chr7_4:5395919-5395938 Msa1136690:intron 30.0%
AATTTCCATCACTCCAATAA+TGG + chr7_4:5396354-5396373 None:intergenic 30.0%
GTTCACTTTGTCATTGGAAT+AGG + chr7_4:5392712-5392731 None:intergenic 35.0%
AACATGGTTCACTTTGTCAT+TGG + chr7_4:5392718-5392737 None:intergenic 35.0%
GTCTCATTGTCATCTATTTG+TGG + chr7_4:5392753-5392772 None:intergenic 35.0%
!! CTCTTCTGTCTATTTCTACT+CGG - chr7_4:5392964-5392983 Msa1136690:CDS 35.0%
GGATAATGCATAATACATGC+AGG + chr7_4:5393529-5393548 None:intergenic 35.0%
CTCATTTGGTATGGACAATA+TGG - chr7_4:5393777-5393796 Msa1136690:intron 35.0%
!!! TTTTTTTTTTGGTGGCGGTT+GGG + chr7_4:5393835-5393854 None:intergenic 35.0%
!!! TTTTTTTTTTTGGTGGCGGT+TGG + chr7_4:5393836-5393855 None:intergenic 35.0%
ATGAAGAATCATGGATGAGA+GGG + chr7_4:5393984-5394003 None:intergenic 35.0%
GATTCTTCATCGTATGATTC+AGG - chr7_4:5393994-5394013 Msa1136690:intron 35.0%
TTCTTGAATAGGTCAATCTC+TGG + chr7_4:5394587-5394606 None:intergenic 35.0%
!! ATATGAGGGAGTATCAACTT+TGG - chr7_4:5394730-5394749 Msa1136690:intron 35.0%
! TCAACTTTGGTTGATATTGG+AGG - chr7_4:5394743-5394762 Msa1136690:intron 35.0%
! CATTTTCAATCACTTGAGGA+AGG + chr7_4:5394835-5394854 None:intergenic 35.0%
! GATGCATTTTCAATCACTTG+AGG + chr7_4:5394839-5394858 None:intergenic 35.0%
!! AGAAAAAGAGTACCTGGAAT+GGG + chr7_4:5394863-5394882 None:intergenic 35.0%
!! AAGAAAAAGAGTACCTGGAA+TGG + chr7_4:5394864-5394883 None:intergenic 35.0%
!!! AAATAACTTGGTTTTACGGG+AGG - chr7_4:5394885-5394904 Msa1136690:intron 35.0%
TGACGATTCCCGAATATTTA+GGG - chr7_4:5395534-5395553 Msa1136690:intron 35.0%
!! ATTGTACCCATTTTTCCTCT+AGG - chr7_4:5395576-5395595 Msa1136690:intron 35.0%
AGAGTTCTTTGATATCCTAG+AGG + chr7_4:5395594-5395613 None:intergenic 35.0%
!!! TACCTTTGAAGCTTCTTTTG+TGG - chr7_4:5395751-5395770 Msa1136690:intron 35.0%
GATACCAACCTTAAGCATTA+TGG + chr7_4:5395950-5395969 None:intergenic 35.0%
TATCCCTATTTCGTTGTTCT+AGG - chr7_4:5396064-5396083 Msa1136690:CDS 35.0%
TCTAGGCTGTATGTCATAAT+TGG - chr7_4:5396081-5396100 Msa1136690:CDS 35.0%
TACAAAGCTTTGCCTCAAAA+TGG - chr7_4:5396140-5396159 Msa1136690:CDS 35.0%
! AGAATCACCTTTCCATTTTG+AGG + chr7_4:5396155-5396174 None:intergenic 35.0%
AAATGGAAAGGTGATTCTTG+TGG - chr7_4:5396157-5396176 Msa1136690:CDS 35.0%
ATCATGTTCATTAATGCTGG+TGG - chr7_4:5396245-5396264 Msa1136690:CDS 35.0%
!!! GAAATTTTGGCTCAACAATC+TGG - chr7_4:5396293-5396312 Msa1136690:CDS 35.0%
TGTTGTGCTTTCTCCATTAT+TGG - chr7_4:5396338-5396357 Msa1136690:CDS 35.0%
TTTCTCCATTATTGGAGTGA+TGG - chr7_4:5396346-5396365 Msa1136690:CDS 35.0%
AACTGCTGGAAACACCAAAT+TGG + chr7_4:5392799-5392818 None:intergenic 40.0%
ATTGCAGCATTAAGAACTGC+TGG + chr7_4:5392813-5392832 None:intergenic 40.0%
! AACACTCTGATTTGCCGAAT+CGG - chr7_4:5392907-5392926 Msa1136690:CDS 40.0%
CACAATGCTACCATCATCAT+TGG + chr7_4:5392991-5393010 None:intergenic 40.0%
ATTAGTGGGAAATGTGTTGC+AGG - chr7_4:5393376-5393395 Msa1136690:intron 40.0%
GAGCTTAGCTCACTTGATAA+AGG + chr7_4:5393550-5393569 None:intergenic 40.0%
TATCAAGTGAGCTAAGCTCT+TGG - chr7_4:5393551-5393570 Msa1136690:intron 40.0%
ATCAAGTGAGCTAAGCTCTT+GGG - chr7_4:5393552-5393571 Msa1136690:intron 40.0%
TAACACACCGAAATTGACAC+CGG - chr7_4:5393675-5393694 Msa1136690:intron 40.0%
ACTAGTGAGCTTAGCTCATT+TGG - chr7_4:5393763-5393782 Msa1136690:intron 40.0%
TGAGCTTAGCTCATTTGGTA+TGG - chr7_4:5393768-5393787 Msa1136690:intron 40.0%
GATGAAGAATCATGGATGAG+AGG + chr7_4:5393985-5394004 None:intergenic 40.0%
! ACTTTGGTTGATATTGGAGG+TGG - chr7_4:5394746-5394765 Msa1136690:intron 40.0%
GTTGATATTGGAGGTGGAAA+TGG - chr7_4:5394752-5394771 Msa1136690:intron 40.0%
GTGACGATTCCCGAATATTT+AGG - chr7_4:5395533-5395552 Msa1136690:intron 40.0%
TCAAGGGAGCCCTAAATATT+CGG + chr7_4:5395546-5395565 None:intergenic 40.0%
GACCACAAAAGAAGCTTCAA+AGG + chr7_4:5395756-5395775 None:intergenic 40.0%
CATTTAGGGATTGAGCATGT+TGG - chr7_4:5395889-5395908 Msa1136690:intron 40.0%
AGGAGATGCCATAATGCTTA+AGG - chr7_4:5395939-5395958 Msa1136690:intron 40.0%
GATGCCATAATGCTTAAGGT+TGG - chr7_4:5395943-5395962 Msa1136690:intron 40.0%
CAGCCTAGAACAACGAAATA+GGG + chr7_4:5396070-5396089 None:intergenic 40.0%
ACAGCCTAGAACAACGAAAT+AGG + chr7_4:5396071-5396090 None:intergenic 40.0%
GGCTGTATGTCATAATTGGT+CGG - chr7_4:5396085-5396104 Msa1136690:CDS 40.0%
AGCTTTGCCTCAAAATGGAA+AGG - chr7_4:5396145-5396164 Msa1136690:CDS 40.0%
!! TTTGTTGGTTCTGGACATTC+TGG + chr7_4:5396194-5396213 None:intergenic 40.0%
GCAAATCTGGATGCATTTGT+TGG + chr7_4:5396209-5396228 None:intergenic 40.0%
GTGGAGTGTGAGTTTCAACA+TGG + chr7_4:5392734-5392753 None:intergenic 45.0%
CAAATTGGCACCTAGTACCA+TGG + chr7_4:5392784-5392803 None:intergenic 45.0%
CATGGTACTAGGTGCCAATT+TGG - chr7_4:5392782-5392801 Msa1136690:CDS 45.0%
!! GGCAAATCAGAGTGTTGAGT+TGG + chr7_4:5392903-5392922 None:intergenic 45.0%
TTGCAAGCAAGCGCAACATA+CGG + chr7_4:5392938-5392957 None:intergenic 45.0%
TCTACTCGGACCAATGATGA+TGG - chr7_4:5392978-5392997 Msa1136690:CDS 45.0%
! GTTTTTGCGATCACACCTTC+TGG - chr7_4:5393014-5393033 Msa1136690:CDS 45.0%
ATGTGTCACCCTGCTTTGAT+AGG - chr7_4:5393098-5393117 Msa1136690:intron 45.0%
TGTGTCACCCTGCTTTGATA+GGG - chr7_4:5393099-5393118 Msa1136690:intron 45.0%
ACCACAACCCTATCAAAGCA+GGG + chr7_4:5393109-5393128 None:intergenic 45.0%
TACCACAACCCTATCAAAGC+AGG + chr7_4:5393110-5393129 None:intergenic 45.0%
! GATTCAGGGCTCGTTTGTTA+CGG - chr7_4:5394009-5394028 Msa1136690:intron 45.0%
GAAAATGCATCACCCATTCC+AGG - chr7_4:5394848-5394867 Msa1136690:intron 45.0%
CAAGGGAGCCCTAAATATTC+GGG + chr7_4:5395545-5395564 None:intergenic 45.0%
TTAGGGATTGAGCATGTTGG+AGG - chr7_4:5395892-5395911 Msa1136690:intron 45.0%
AGCATTATGGCATCTCCTTG+TGG + chr7_4:5395937-5395956 None:intergenic 45.0%
!! CTGGATGCATTTGTTGGTTC+TGG + chr7_4:5396203-5396222 None:intergenic 45.0%
!!! CATTTTTATAATATATTTAT+AGG - chr7_4:5394534-5394553 Msa1136690:CDS 5.0%
!!! ATAAAAATTAAATTAATTTG+TGG + chr7_4:5395068-5395087 None:intergenic 5.0%
!! ACTTAAAAATTAATTAATTA+AGG + chr7_4:5395251-5395270 None:intergenic 5.0%
!! TTATAAATAAATAAACAAAT+AGG - chr7_4:5396373-5396392 Msa1136690:CDS 5.0%
CAATGAGACACTCTCTGCCA+TGG - chr7_4:5392764-5392783 Msa1136690:CDS 50.0%
ACACTCTCTGCCATGGTACT+AGG - chr7_4:5392771-5392790 Msa1136690:CDS 50.0%
AACATACGGTCGAGCCGATT+CGG + chr7_4:5392924-5392943 None:intergenic 50.0%
ACCCTGCTTTGATAGGGTTG+TGG - chr7_4:5393105-5393124 Msa1136690:intron 50.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 5392666 5396478 5392666 ID=Msa1136690;Name=Msa1136690
chr7_4 mRNA 5392666 5396478 5392666 ID=Msa1136690-mRNA-1;Parent=Msa1136690;Name=Msa1136690-mRNA-1;_AED=0.25;_eAED=0.25;_QI=36|1|1|1|1|1|4|96|366
chr7_4 exon 5392666 5393058 5392666 ID=Msa1136690-mRNA-1:exon:1423;Parent=Msa1136690-mRNA-1
chr7_4 exon 5393184 5393248 5393184 ID=Msa1136690-mRNA-1:exon:1422;Parent=Msa1136690-mRNA-1
chr7_4 exon 5394275 5394588 5394275 ID=Msa1136690-mRNA-1:exon:1421;Parent=Msa1136690-mRNA-1
chr7_4 exon 5396018 5396478 5396018 ID=Msa1136690-mRNA-1:exon:1420;Parent=Msa1136690-mRNA-1
chr7_4 five_prime_UTR 5396443 5396478 5396443 ID=Msa1136690-mRNA-1:five_prime_utr;Parent=Msa1136690-mRNA-1
chr7_4 CDS 5396018 5396442 5396018 ID=Msa1136690-mRNA-1:cds;Parent=Msa1136690-mRNA-1
chr7_4 CDS 5394275 5394588 5394275 ID=Msa1136690-mRNA-1:cds;Parent=Msa1136690-mRNA-1
chr7_4 CDS 5393184 5393248 5393184 ID=Msa1136690-mRNA-1:cds;Parent=Msa1136690-mRNA-1
chr7_4 CDS 5392762 5393058 5392762 ID=Msa1136690-mRNA-1:cds;Parent=Msa1136690-mRNA-1
chr7_4 three_prime_UTR 5392666 5392761 5392666 ID=Msa1136690-mRNA-1:three_prime_utr;Parent=Msa1136690-mRNA-1
Gene Sequence

>Msa1136690

ATGAGTTCCTATTCCAATGACAAAGTGAACCATGTTGAAACTCACACTCCACAAATAGATGACAATGAGACACTCTCTGCCATGGTACTAGGTGCCAATTTGGTGTTTCCAGCAGTTCTTAATGCTGCAATTCAACTCAACTTGTTTGAAATCATTGGTGATGGATTCATGTCATCTTTTGAAATTGCTTCAAAGTTACCAACTCAACACTCTGATTTGCCGAATCGGCTCGACCGTATGTTGCGCTTGCTTGCAAGCTACTCTCTTCTGTCTATTTCTACTCGGACCAATGATGATGGTAGCATTGTGAGAGTTTTTGCGATCACACCTTCTGGTAAATACTTTTGCTATGATGAAAATAGTGATCATGGTTATGTTGGTTCGTTCACATCATTTATGTGTCACCCTGCTTTGATAGGGTTGTGGTTGAATTTCAAGGATGCAGTACTTGATCCAGAGATTGACCTATTCAAGAAAGTTAATGGAATAACTAAGTATGAGTACTTTGGGAAAGATCCACAAGTAAACCAAATATTCAACAAATCAATGACTAATATGACCAAAATTCACATGAAAAAAATCCTTGAAATATATAAAGGATATGAGGGAGTATCAACTTTGGTTGATATTGGAGGTGGAAATGGACAAACTCTCAAAATGATTATTGCAAAATATCCATCAATTAAGGGAATCAATTTTGACCTTCCTCAAGTGATTGAAAATGCATCACCCATTCCAGGGATTGAGCATGTTGGAGGAAGCATGTTTGAAAGTATTCCACAAGGAGATGCCATAATGCTTAAGGCTGTATGTCATAATTGGTCGGATGAAAAATGCTTAGAAATTTTTAGCAATTGTTACAAAGCTTTGCCTCAAAATGGAAAGGTGATTCTTGTGGAGCTTGCACTACCAGAATGTCCAGAACCAACAAATGCATCCAGATTTGCTTCAATTATTGATAATATCATGTTCATTAATGCTGGTGGAAAAGAAAGAACTGCTAAAGAATATGAAATTTTGGCTCAACAATCTGGATTTTCAAGACTTGAAGTTGTTTGTTGTGCTTTCTCCATTATTGGAGTGATGGAAATTTATAAATAA

Protein sequence

>Msa1136690

MSSYSNDKVNHVETHTPQIDDNETLSAMVLGANLVFPAVLNAAIQLNLFEIIGDGFMSSFEIASKLPTQHSDLPNRLDRMLRLLASYSLLSISTRTNDDGSIVRVFAITPSGKYFCYDENSDHGYVGSFTSFMCHPALIGLWLNFKDAVLDPEIDLFKKVNGITKYEYFGKDPQVNQIFNKSMTNMTKIHMKKILEIYKGYEGVSTLVDIGGGNGQTLKMIIAKYPSIKGINFDLPQVIENASPIPGIEHVGGSMFESIPQGDAIMLKAVCHNWSDEKCLEIFSNCYKALPQNGKVILVELALPECPEPTNASRFASIIDNIMFINAGGKERTAKEYEILAQQSGFSRLEVVCCAFSIIGVMEIYK*