Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729790 | XP_003614523.1 | 90.476 | 147 | 14 | 0 | 1 | 147 | 1 | 147 | 1.35e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729790 | sp|Q93VP2|HIP22_ARATH | 48.026 | 152 | 74 | 2 | 1 | 147 | 1 | 152 | 2.24e-46 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729790 | G7JZD6 | 90.476 | 147 | 14 | 0 | 1 | 147 | 1 | 147 | 6.46e-97 | 285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0729790 | Msa0812720 | 0.802619 | 5.147833e-49 | -8.615850e-47 |
| Msa0729790 | Msa0848970 | 0.964269 | 4.088636e-123 | -8.615850e-47 |
| Msa0729790 | Msa1007900 | 0.817333 | 3.481800e-52 | -8.615850e-47 |
| Msa0729790 | Msa1049380 | 0.802146 | 6.444402e-49 | -8.615850e-47 |
| Msa0729790 | Msa1136690 | 0.819500 | 1.124214e-52 | -8.615850e-47 |
| Msa0729790 | Msa1211940 | 0.812459 | 4.194472e-51 | -8.615850e-47 |
| Msa0729790 | Msa1376880 | 0.821737 | 3.443524e-53 | -8.615850e-47 |
| Msa0729790 | Msa1398140 | 0.800829 | 1.199394e-48 | -8.615850e-47 |
| Msa0729790 | Msa1433360 | 0.803830 | 2.890050e-49 | -8.615850e-47 |
| Msa0464620 | Msa0729790 | 0.809458 | 1.873213e-50 | -8.615850e-47 |
| Msa0510050 | Msa0729790 | 0.821507 | 3.891107e-53 | -8.615850e-47 |
| Msa0557240 | Msa0729790 | 0.803425 | 3.507210e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729790 | MtrunA17_Chr5g0422891 | 90.476 | 147 | 14 | 0 | 1 | 147 | 1 | 147 | 1.24e-100 | 285 |
| Msa0729790 | MtrunA17_Chr1g0160201 | 48.299 | 147 | 76 | 0 | 1 | 147 | 1 | 147 | 3.01e-50 | 157 |
| Msa0729790 | MtrunA17_Chr5g0407821 | 48.980 | 147 | 73 | 1 | 1 | 147 | 1 | 145 | 4.78e-47 | 149 |
| Msa0729790 | MtrunA17_Chr6g0448861 | 50.968 | 155 | 68 | 4 | 1 | 147 | 1 | 155 | 2.55e-45 | 145 |
| Msa0729790 | MtrunA17_Chr7g0251491 | 49.660 | 147 | 70 | 3 | 2 | 147 | 27 | 170 | 2.19e-43 | 140 |
| Msa0729790 | MtrunA17_Chr8g0382721 | 45.638 | 149 | 78 | 2 | 2 | 147 | 5 | 153 | 1.81e-39 | 130 |
| Msa0729790 | MtrunA17_Chr3g0124411 | 47.967 | 123 | 64 | 0 | 25 | 147 | 30 | 152 | 2.12e-39 | 130 |
| Msa0729790 | MtrunA17_Chr5g0405811 | 43.312 | 157 | 79 | 4 | 1 | 147 | 1 | 157 | 4.25e-36 | 122 |
| Msa0729790 | MtrunA17_Chr4g0036931 | 40.881 | 159 | 79 | 4 | 1 | 147 | 1 | 156 | 2.58e-34 | 117 |
| Msa0729790 | MtrunA17_Chr3g0145621 | 38.462 | 156 | 87 | 3 | 1 | 147 | 1 | 156 | 5.95e-34 | 116 |
| Msa0729790 | MtrunA17_Chr3g0115421 | 39.456 | 147 | 86 | 2 | 2 | 147 | 5 | 149 | 1.84e-30 | 107 |
| Msa0729790 | MtrunA17_Chr2g0325601 | 30.986 | 142 | 70 | 3 | 29 | 147 | 6 | 142 | 2.18e-16 | 71.2 |
| Msa0729790 | MtrunA17_Chr1g0189221 | 42.466 | 73 | 42 | 0 | 17 | 89 | 45 | 117 | 4.45e-15 | 68.6 |
| Msa0729790 | MtrunA17_Chr7g0218981 | 44.615 | 65 | 36 | 0 | 25 | 89 | 4 | 68 | 6.78e-15 | 66.6 |
| Msa0729790 | MtrunA17_Chr1g0198341 | 43.077 | 65 | 37 | 0 | 25 | 89 | 4 | 68 | 7.25e-14 | 62.8 |
| Msa0729790 | MtrunA17_Chr1g0191671 | 38.710 | 62 | 38 | 0 | 29 | 90 | 14 | 75 | 6.07e-12 | 62.0 |
| Msa0729790 | MtrunA17_Chr6g0460361 | 37.037 | 108 | 56 | 4 | 51 | 147 | 4 | 110 | 7.27e-12 | 58.5 |
| Msa0729790 | MtrunA17_Chr7g0272571 | 38.462 | 65 | 40 | 0 | 25 | 89 | 33 | 97 | 2.34e-11 | 60.1 |
| Msa0729790 | MtrunA17_Chr4g0065651 | 36.508 | 63 | 40 | 0 | 29 | 91 | 14 | 76 | 7.33e-11 | 58.9 |
| Msa0729790 | MtrunA17_Chr0c22g0493881 | 36.508 | 63 | 40 | 0 | 29 | 91 | 14 | 76 | 7.65e-11 | 58.9 |
| Msa0729790 | MtrunA17_Chr4g0065621 | 36.508 | 63 | 40 | 0 | 29 | 91 | 14 | 76 | 9.16e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729790 | AT1G22990.1 | 48.026 | 152 | 74 | 2 | 1 | 147 | 1 | 152 | 2.28e-47 | 150 |
| Msa0729790 | AT1G22990.2 | 47.297 | 148 | 76 | 2 | 1 | 147 | 1 | 147 | 6.32e-45 | 144 |
| Msa0729790 | AT1G71050.1 | 47.552 | 143 | 72 | 2 | 7 | 147 | 11 | 152 | 4.91e-42 | 137 |
| Msa0729790 | AT5G17450.1 | 46.309 | 149 | 78 | 2 | 1 | 147 | 1 | 149 | 6.61e-39 | 129 |
| Msa0729790 | AT4G38580.1 | 42.208 | 154 | 81 | 4 | 1 | 147 | 1 | 153 | 4.09e-35 | 119 |
| Msa0729790 | AT4G38580.2 | 42.208 | 154 | 81 | 4 | 1 | 147 | 1 | 153 | 4.09e-35 | 119 |
| Msa0729790 | AT5G66110.3 | 43.243 | 148 | 71 | 4 | 10 | 147 | 3 | 147 | 2.05e-34 | 117 |
| Msa0729790 | AT5G66110.1 | 43.243 | 148 | 71 | 4 | 10 | 147 | 3 | 147 | 2.05e-34 | 117 |
| Msa0729790 | AT4G35060.1 | 35.948 | 153 | 92 | 2 | 1 | 147 | 1 | 153 | 9.39e-33 | 113 |
| Msa0729790 | AT4G39700.1 | 47.143 | 140 | 57 | 3 | 20 | 147 | 24 | 158 | 1.33e-32 | 113 |
| Msa0729790 | AT5G66110.2 | 45.968 | 124 | 55 | 3 | 33 | 147 | 1 | 121 | 9.95e-32 | 110 |
| Msa0729790 | AT4G08570.1 | 38.514 | 148 | 87 | 3 | 2 | 147 | 5 | 150 | 1.42e-29 | 105 |
| Msa0729790 | AT5G17450.2 | 47.959 | 98 | 50 | 1 | 51 | 147 | 8 | 105 | 1.20e-28 | 101 |
| Msa0729790 | AT3G56891.1 | 33.974 | 156 | 71 | 6 | 22 | 147 | 13 | 166 | 3.82e-19 | 79.3 |
| Msa0729790 | AT3G56891.2 | 34.483 | 145 | 63 | 6 | 33 | 147 | 1 | 143 | 3.26e-18 | 76.3 |
| Msa0729790 | AT1G06330.1 | 47.143 | 70 | 36 | 1 | 26 | 95 | 3 | 71 | 7.20e-17 | 72.8 |
| Msa0729790 | AT2G18196.1 | 31.333 | 150 | 79 | 4 | 15 | 147 | 36 | 178 | 8.02e-17 | 73.6 |
| Msa0729790 | AT4G10465.1 | 34.000 | 150 | 84 | 6 | 9 | 147 | 38 | 183 | 1.18e-15 | 70.5 |
| Msa0729790 | AT1G66240.1 | 45.070 | 71 | 39 | 0 | 19 | 89 | 27 | 97 | 6.81e-15 | 66.6 |
| Msa0729790 | AT2G18196.2 | 32.576 | 132 | 65 | 4 | 33 | 147 | 1 | 125 | 6.59e-14 | 64.7 |
| Msa0729790 | AT3G56240.3 | 41.538 | 65 | 38 | 0 | 25 | 89 | 3 | 67 | 3.95e-12 | 59.7 |
| Msa0729790 | AT3G56240.1 | 41.538 | 65 | 38 | 0 | 25 | 89 | 3 | 67 | 3.95e-12 | 59.7 |
| Msa0729790 | AT5G27690.1 | 39.344 | 61 | 37 | 0 | 29 | 89 | 34 | 94 | 9.46e-12 | 61.6 |
| Msa0729790 | AT1G66240.2 | 46.552 | 58 | 31 | 0 | 33 | 90 | 1 | 58 | 1.53e-11 | 57.0 |
| Msa0729790 | AT1G23000.2 | 31.868 | 91 | 61 | 1 | 4 | 93 | 51 | 141 | 2.57e-11 | 60.5 |
Find 38 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAGACCGTTCATATC+AGG | 0.222233 | 5_1:-37776181 | Msa0729790:intron |
| GTGACTTATCCTTATGCTAT+TGG | 0.223846 | 5_1:-37773601 | Msa0729790:CDS |
| TGACTTATCCTTATGCTATT+GGG | 0.257197 | 5_1:-37773600 | Msa0729790:CDS |
| CGTTCATATCAGGGTGAAAA+TGG | 0.278887 | 5_1:-37776171 | Msa0729790:CDS |
| TGAATGAAGAAAACCTTCTT+AGG | 0.338448 | 5_1:+37776279 | None:intergenic |
| AGGATAAGTCACTAAATTGT+AGG | 0.359921 | 5_1:+37773612 | None:intergenic |
| CAACAAAGGGTAACCGTGAC+TGG | 0.368355 | 5_1:-37773709 | Msa0729790:CDS |
| TAGGGTCACCCACAGCTTGC+GGG | 0.407801 | 5_1:+37773536 | None:intergenic |
| ATCTTCAACTCTGGAGACTT+AGG | 0.420116 | 5_1:+37773517 | None:intergenic |
| TTCTTAGGAATACGTTTCTC+TGG | 0.437063 | 5_1:+37776294 | None:intergenic |
| CACTAAATTGTAGGGAACTA+AGG | 0.444703 | 5_1:+37773621 | None:intergenic |
| AGCGCCATCATCTTCAACTC+TGG | 0.446400 | 5_1:+37773508 | None:intergenic |
| CAGGGGTGTCCCGCAAGCTG+TGG | 0.453918 | 5_1:-37773545 | Msa0729790:CDS |
| AAGCACCTACTGGTTTCGTC+AGG | 0.454194 | 5_1:-37773564 | Msa0729790:CDS |
| AGAGAAACGTATTCCTAAGA+AGG | 0.475130 | 5_1:-37776292 | Msa0729790:intron |
| AACGCTGTCGAAGACATTGA+TGG | 0.488639 | 5_1:-37776119 | Msa0729790:intron |
| CATTTAGACCGTTCATATCA+GGG | 0.492434 | 5_1:-37776180 | Msa0729790:intron |
| TCTTCAACTCTGGAGACTTA+GGG | 0.500157 | 5_1:+37773518 | None:intergenic |
| TCATATGCCCCAATAGCATA+AGG | 0.506694 | 5_1:+37773592 | None:intergenic |
| TGCATCTATATTCCCAGTCA+CGG | 0.520958 | 5_1:+37773696 | None:intergenic |
| GTCTCCAGAGTTGAAGATGA+TGG | 0.530533 | 5_1:-37773512 | Msa0729790:CDS |
| TTAGGAATACGTTTCTCTGG+TGG | 0.534921 | 5_1:+37776297 | None:intergenic |
| GACTTATCCTTATGCTATTG+GGG | 0.536799 | 5_1:-37773599 | Msa0729790:CDS |
| TGTAAATCAAAAGCAACAAA+GGG | 0.536996 | 5_1:-37773722 | Msa0729790:CDS |
| AGGGGTGTCCCGCAAGCTGT+GGG | 0.539685 | 5_1:-37773544 | Msa0729790:CDS |
| GGATAAGTCACTAAATTGTA+GGG | 0.550485 | 5_1:+37773613 | None:intergenic |
| TTAGATGAAGTGAGGAGCAC+AGG | 0.553603 | 5_1:-37773664 | Msa0729790:CDS |
| ATGTAAATCAAAAGCAACAA+AGG | 0.557813 | 5_1:-37773723 | Msa0729790:CDS |
| TGGATTGTGAAGGTTGTGTA+AGG | 0.564177 | 5_1:-37776151 | Msa0729790:CDS |
| AACAAAGGGTAACCGTGACT+GGG | 0.572496 | 5_1:-37773708 | Msa0729790:CDS |
| TTAGGGTCACCCACAGCTTG+CGG | 0.572690 | 5_1:+37773535 | None:intergenic |
| AGCACCTACTGGTTTCGTCA+GGG | 0.572954 | 5_1:-37773563 | Msa0729790:CDS |
| TATGACATGAAAGCACCTAC+TGG | 0.577293 | 5_1:-37773574 | Msa0729790:CDS |
| TGGGAATATAGATGCAAATG+AGG | 0.582610 | 5_1:-37773689 | Msa0729790:CDS |
| GCACCTACTGGTTTCGTCAG+GGG | 0.609326 | 5_1:-37773562 | Msa0729790:CDS |
| ATGAGGTCTTAGATGAAGTG+AGG | 0.659617 | 5_1:-37773672 | Msa0729790:CDS |
| ACACCCCTGACGAAACCAGT+AGG | 0.666007 | 5_1:+37773559 | None:intergenic |
| AGGGTGAAAATGGATTGTGA+AGG | 0.746032 | 5_1:-37776161 | Msa0729790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTCAAATATTATTATTTTT+TGG | - | chr5_1:37774237-37774256 | Msa0729790:intron | 10.0% |
| !! | ACAAATAAAATAAAATTGAA+GGG | + | chr5_1:37775095-37775114 | None:intergenic | 10.0% |
| !! | AACAAATAAAATAAAATTGA+AGG | + | chr5_1:37775096-37775115 | None:intergenic | 10.0% |
| !!! | TTTTCTATCAAATAATTTAT+TGG | + | chr5_1:37775622-37775641 | None:intergenic | 10.0% |
| !! | ATATATATATGCATATATGT+AGG | - | chr5_1:37773738-37773757 | Msa0729790:CDS | 15.0% |
| !!! | TTTTAGAAACAAATATCAAT+TGG | + | chr5_1:37774091-37774110 | None:intergenic | 15.0% |
| !! | ATATATACATACATATAAGT+GGG | + | chr5_1:37774114-37774133 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr5_1:37774961-37774980 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr5_1:37774960-37774979 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr5_1:37774739-37774758 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr5_1:37774870-37774889 | Msa0729790:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr5_1:37774960-37774979 | Msa0729790:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr5_1:37774961-37774980 | Msa0729790:intron | 15.0% |
| !!! | AGAAAATGATATTATTTTTC+AGG | - | chr5_1:37776053-37776072 | Msa0729790:intron | 15.0% |
| !! | TTAAATAATTCACACAATTG+AGG | - | chr5_1:37773565-37773584 | Msa0729790:CDS | 20.0% |
| !!! | TGGATTATACCTAATTTTTT+GGG | - | chr5_1:37773806-37773825 | Msa0729790:intron | 20.0% |
| !!! | ATATTTTTAACACACTTCAT+GGG | + | chr5_1:37773848-37773867 | None:intergenic | 20.0% |
| !!! | TATATTTTTAACACACTTCA+TGG | + | chr5_1:37773849-37773868 | None:intergenic | 20.0% |
| !! | CATATATACATACATATAAG+TGG | + | chr5_1:37774115-37774134 | None:intergenic | 20.0% |
| !! | TTATAATTATGTTCATGACT+TGG | - | chr5_1:37774296-37774315 | Msa0729790:intron | 20.0% |
| !! | TAGTTATGCATTCATTATAA+AGG | - | chr5_1:37774416-37774435 | Msa0729790:intron | 20.0% |
| !! | TCCTTAAATGTATAACAAAT+AGG | - | chr5_1:37774454-37774473 | Msa0729790:intron | 20.0% |
| !!! | ACCTATTTGTTATACATTTA+AGG | + | chr5_1:37774458-37774477 | None:intergenic | 20.0% |
| !! | ATAGGTACATCATTAAAATT+TGG | - | chr5_1:37774472-37774491 | Msa0729790:intron | 20.0% |
| !! | TAGGTACATCATTAAAATTT+GGG | - | chr5_1:37774473-37774492 | Msa0729790:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr5_1:37774609-37774628 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr5_1:37774610-37774629 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr5_1:37774704-37774723 | None:intergenic | 20.0% |
| !!! | TACTTTTTTTTTTTTGGTAG+TGG | + | chr5_1:37775241-37775260 | None:intergenic | 20.0% |
| !!! | ACATGGTACTTTTTTTTTTT+TGG | + | chr5_1:37775247-37775266 | None:intergenic | 20.0% |
| !! | GCATATGATTAAATATTCAT+AGG | + | chr5_1:37775327-37775346 | None:intergenic | 20.0% |
| !!! | TATCAAATAATTTATTGGCT+AGG | + | chr5_1:37775617-37775636 | None:intergenic | 20.0% |
| !! | TTTGTACAAAAAATAAACCA+AGG | - | chr5_1:37775803-37775822 | Msa0729790:intron | 20.0% |
| ! | AAGTGAAAAAATCTGAAAGT+AGG | + | chr5_1:37773485-37773504 | None:intergenic | 25.0% |
| ! | TATAATCCAGATGATTTAGT+GGG | + | chr5_1:37773795-37773814 | None:intergenic | 25.0% |
| !!! | CTGGATTATACCTAATTTTT+TGG | - | chr5_1:37773805-37773824 | Msa0729790:intron | 25.0% |
| !! | CAGTATATTTTGTTGAAACT+AGG | - | chr5_1:37773950-37773969 | Msa0729790:intron | 25.0% |
| ! | GATAAAATCCACTTAGAATA+TGG | - | chr5_1:37773992-37774011 | Msa0729790:intron | 25.0% |
| ! | TTAAACTCATGTGATACTTT+AGG | + | chr5_1:37774170-37774189 | None:intergenic | 25.0% |
| !! | TTTGCTTACTTGCAAATTTT+TGG | + | chr5_1:37774323-37774342 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr5_1:37774576-37774595 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr5_1:37774898-37774917 | Msa0729790:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr5_1:37774899-37774918 | Msa0729790:intron | 25.0% |
| !! | TTCTTGATTGTTACTTGATA+TGG | + | chr5_1:37775059-37775078 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTGGTAGTGGT+CGG | + | chr5_1:37775237-37775256 | None:intergenic | 25.0% |
| !!! | ATTTTAATTCCTTGTGTATC+AGG | + | chr5_1:37775275-37775294 | None:intergenic | 25.0% |
| ! | AATATTTAATCATATGCGTG+AGG | - | chr5_1:37775330-37775349 | Msa0729790:intron | 25.0% |
| !!! | GAAACATAAAAGTTGGTTTT+AGG | + | chr5_1:37775497-37775516 | None:intergenic | 25.0% |
| ! | ACACTTTAAGTATGAAAAAG+TGG | + | chr5_1:37775589-37775608 | None:intergenic | 25.0% |
| !!! | ATGATATTATTTTTCAGGTG+TGG | - | chr5_1:37776058-37776077 | Msa0729790:intron | 25.0% |
| ! | ATGTAAATCAAAAGCAACAA+AGG | - | chr5_1:37776090-37776109 | Msa0729790:intron | 25.0% |
| ! | TGTAAATCAAAAGCAACAAA+GGG | - | chr5_1:37776091-37776110 | Msa0729790:intron | 25.0% |
| TGAATGAAGAAAACCTTCTT+AGG | + | chr5_1:37773537-37773556 | None:intergenic | 30.0% | |
| GTATAATCCAGATGATTTAG+TGG | + | chr5_1:37773796-37773815 | None:intergenic | 30.0% | |
| TTCATGGGTAAAAGTTATAC+GGG | + | chr5_1:37773833-37773852 | None:intergenic | 30.0% | |
| CTTCATGGGTAAAAGTTATA+CGG | + | chr5_1:37773834-37773853 | None:intergenic | 30.0% | |
| ! | AACATTTTTCGTACACTTAG+AGG | - | chr5_1:37773889-37773908 | Msa0729790:intron | 30.0% |
| AGTGTTATAAGTAACACACT+AGG | - | chr5_1:37773912-37773931 | Msa0729790:intron | 30.0% | |
| TGCAATGTTAGTAGTCATAA+TGG | + | chr5_1:37774062-37774081 | None:intergenic | 30.0% | |
| ! | CTAGTTTATTCTGCATCTTT+TGG | + | chr5_1:37774206-37774225 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr5_1:37774992-37775011 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr5_1:37774991-37775010 | None:intergenic | 30.0% |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr5_1:37774577-37774596 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr5_1:37774836-37774855 | None:intergenic | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr5_1:37774991-37775010 | Msa0729790:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr5_1:37774992-37775011 | Msa0729790:intron | 30.0% |
| CAATCAAGAAATATTGTCCT+TGG | - | chr5_1:37775069-37775088 | Msa0729790:intron | 30.0% | |
| AAAATAAAATTGAAGGGCCA+AGG | + | chr5_1:37775089-37775108 | None:intergenic | 30.0% | |
| TCAATTGAGTTAAACTCATG+AGG | + | chr5_1:37775172-37775191 | None:intergenic | 30.0% | |
| TGAGTTTAACTCAATTGACA+TGG | - | chr5_1:37775174-37775193 | Msa0729790:intron | 30.0% | |
| !!! | TTTTTTTTTTGGTAGTGGTC+GGG | + | chr5_1:37775236-37775255 | None:intergenic | 30.0% |
| TCATAGGATTCAGTTAATTC+AGG | + | chr5_1:37775311-37775330 | None:intergenic | 30.0% | |
| !!! | AAGTTGGTTTTAGGTAATTC+TGG | + | chr5_1:37775488-37775507 | None:intergenic | 30.0% |
| TTACGGTGAAACATAAAAGT+TGG | + | chr5_1:37775504-37775523 | None:intergenic | 30.0% | |
| TAGCTTAAGGATGTTTCTTA+CGG | + | chr5_1:37775521-37775540 | None:intergenic | 30.0% | |
| ! | TTTTGTACAAATTGCATCGT+TGG | + | chr5_1:37775794-37775813 | None:intergenic | 30.0% |
| !! | TATTGAAATGCTGTTTCCTA+CGG | + | chr5_1:37775874-37775893 | None:intergenic | 30.0% |
| ATATGTACGAAATCAAGAGA+AGG | - | chr5_1:37775916-37775935 | Msa0729790:intron | 30.0% | |
| TATGTACGAAATCAAGAGAA+GGG | - | chr5_1:37775917-37775936 | Msa0729790:intron | 30.0% | |
| GGATAAGTCACTAAATTGTA+GGG | + | chr5_1:37776203-37776222 | None:intergenic | 30.0% | |
| AGGATAAGTCACTAAATTGT+AGG | + | chr5_1:37776204-37776223 | None:intergenic | 30.0% | |
| TGACTTATCCTTATGCTATT+GGG | - | chr5_1:37776213-37776232 | Msa0729790:intron | 30.0% | |
| TTCTTAGGAATACGTTTCTC+TGG | + | chr5_1:37773522-37773541 | None:intergenic | 35.0% | |
| AGAGAAACGTATTCCTAAGA+AGG | - | chr5_1:37773521-37773540 | Msa0729790:CDS | 35.0% | |
| CATTTAGACCGTTCATATCA+GGG | - | chr5_1:37773633-37773652 | Msa0729790:CDS | 35.0% | |
| ! | CATTTTCACCCTGATATGAA+CGG | + | chr5_1:37773644-37773663 | None:intergenic | 35.0% |
| ATGAAACCCACTAAATCATC+TGG | - | chr5_1:37773786-37773805 | Msa0729790:intron | 35.0% | |
| TATACGGGTCCCAAAAAATT+AGG | + | chr5_1:37773818-37773837 | None:intergenic | 35.0% | |
| CAAGTCAACCATATTCTAAG+TGG | + | chr5_1:37774003-37774022 | None:intergenic | 35.0% | |
| !! | CTTTAGGATATTCAATCCTG+AGG | + | chr5_1:37774154-37774173 | None:intergenic | 35.0% |
| ATTCGTTGTAGTGCATACAA+TGG | + | chr5_1:37774265-37774284 | None:intergenic | 35.0% | |
| TATGCACTACAACGAATAGA+GGG | - | chr5_1:37774268-37774287 | Msa0729790:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr5_1:37774976-37774995 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr5_1:37774976-37774995 | Msa0729790:intron | 35.0% | |
| TGCATAATATATGCAACGTC+CGG | - | chr5_1:37775201-37775220 | Msa0729790:intron | 35.0% | |
| AAAATAAACCAAGGCAGACA+AGG | - | chr5_1:37775812-37775831 | Msa0729790:intron | 35.0% | |
| AAAATATTCCTTGTCTGCCT+TGG | + | chr5_1:37775823-37775842 | None:intergenic | 35.0% | |
| TGGGAATATAGATGCAAATG+AGG | - | chr5_1:37776124-37776143 | Msa0729790:CDS | 35.0% | |
| CACTAAATTGTAGGGAACTA+AGG | + | chr5_1:37776195-37776214 | None:intergenic | 35.0% | |
| GTGACTTATCCTTATGCTAT+TGG | - | chr5_1:37776212-37776231 | Msa0729790:intron | 35.0% | |
| GACTTATCCTTATGCTATTG+GGG | - | chr5_1:37776214-37776233 | Msa0729790:intron | 35.0% | |
| TTAGGAATACGTTTCTCTGG+TGG | + | chr5_1:37773519-37773538 | None:intergenic | 40.0% | |
| CCTGATATGAACGGTCTAAA+TGG | + | chr5_1:37773635-37773654 | None:intergenic | 40.0% | |
| CCATTTAGACCGTTCATATC+AGG | - | chr5_1:37773632-37773651 | Msa0729790:CDS | 40.0% | |
| CGTTCATATCAGGGTGAAAA+TGG | - | chr5_1:37773642-37773661 | Msa0729790:CDS | 40.0% | |
| !! | AGGGTGAAAATGGATTGTGA+AGG | - | chr5_1:37773652-37773671 | Msa0729790:CDS | 40.0% |
| TGGATTGTGAAGGTTGTGTA+AGG | - | chr5_1:37773662-37773681 | Msa0729790:CDS | 40.0% | |
| ACCTTAAACTCCATAAGGTG+TGG | + | chr5_1:37774026-37774045 | None:intergenic | 40.0% | |
| ACACCTTATGGAGTTTAAGG+TGG | - | chr5_1:37774025-37774044 | Msa0729790:intron | 40.0% | |
| GTATGCACTACAACGAATAG+AGG | - | chr5_1:37774267-37774286 | Msa0729790:intron | 40.0% | |
| GCATAATATATGCAACGTCC+GGG | - | chr5_1:37775202-37775221 | Msa0729790:intron | 40.0% | |
| CATAATATATGCAACGTCCG+GGG | - | chr5_1:37775203-37775222 | Msa0729790:intron | 40.0% | |
| ! | TTGTGTATCAGGAGAGTACA+TGG | + | chr5_1:37775264-37775283 | None:intergenic | 40.0% |
| ATGTACTCTCCTGATACACA+AGG | - | chr5_1:37775263-37775282 | Msa0729790:intron | 40.0% | |
| CCATGAAGGTTAGTAGCTTA+AGG | + | chr5_1:37775534-37775553 | None:intergenic | 40.0% | |
| CCTTAAGCTACTAACCTTCA+TGG | - | chr5_1:37775531-37775550 | Msa0729790:intron | 40.0% | |
| AAGCTACTAACCTTCATGGT+AGG | - | chr5_1:37775535-37775554 | Msa0729790:intron | 40.0% | |
| TACGTTTCTACCTACCATGA+AGG | + | chr5_1:37775548-37775567 | None:intergenic | 40.0% | |
| GACTTGCAGTTGTACGTTAA+AGG | - | chr5_1:37775732-37775751 | Msa0729790:intron | 40.0% | |
| AATTGCAACTCCAAAACCGT+AGG | - | chr5_1:37775855-37775874 | Msa0729790:intron | 40.0% | |
| !!! | AATGCTGTTTCCTACGGTTT+TGG | + | chr5_1:37775868-37775887 | None:intergenic | 40.0% |
| CGAAATCAAGAGAAGGGAAA+AGG | - | chr5_1:37775923-37775942 | Msa0729790:intron | 40.0% | |
| TGCATCTATATTCCCAGTCA+CGG | + | chr5_1:37776120-37776139 | None:intergenic | 40.0% | |
| ATGAGGTCTTAGATGAAGTG+AGG | - | chr5_1:37776141-37776160 | Msa0729790:CDS | 40.0% | |
| CAGGAAAAACAGCTGATATG+TGG | - | chr5_1:37776168-37776187 | Msa0729790:CDS | 40.0% | |
| TCATATGCCCCAATAGCATA+AGG | + | chr5_1:37776224-37776243 | None:intergenic | 40.0% | |
| !! | TATGACATGAAAGCACCTAC+TGG | - | chr5_1:37776239-37776258 | Msa0729790:intron | 40.0% |
| ! | TCTTCAACTCTGGAGACTTA+GGG | + | chr5_1:37776298-37776317 | None:intergenic | 40.0% |
| ! | ATCTTCAACTCTGGAGACTT+AGG | + | chr5_1:37776299-37776318 | None:intergenic | 40.0% |
| AACGCTGTCGAAGACATTGA+TGG | - | chr5_1:37773694-37773713 | Msa0729790:CDS | 45.0% | |
| GCCACACCTTATGGAGTTTA+AGG | - | chr5_1:37774022-37774041 | Msa0729790:intron | 45.0% | |
| CCACCACCTTAAACTCCATA+AGG | + | chr5_1:37774031-37774050 | None:intergenic | 45.0% | |
| ! | CCTTATGGAGTTTAAGGTGG+TGG | - | chr5_1:37774028-37774047 | Msa0729790:intron | 45.0% |
| ACTTTCGATACAGACACCTC+AGG | - | chr5_1:37774135-37774154 | Msa0729790:intron | 45.0% | |
| ACTCATGAGGACAGAGTACA+TGG | + | chr5_1:37775159-37775178 | None:intergenic | 45.0% | |
| AACAAAGGGTAACCGTGACT+GGG | - | chr5_1:37776105-37776124 | Msa0729790:intron | 45.0% | |
| ! | TTAGATGAAGTGAGGAGCAC+AGG | - | chr5_1:37776149-37776168 | Msa0729790:CDS | 45.0% |
| GTCTCCAGAGTTGAAGATGA+TGG | - | chr5_1:37776301-37776320 | Msa0729790:CDS | 45.0% | |
| !! | AATTAAAATATTATTACAAT+AGG | + | chr5_1:37773600-37773619 | None:intergenic | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr5_1:37774931-37774950 | Msa0729790:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr5_1:37774932-37774951 | Msa0729790:intron | 5.0% |
| !!! | AAAACATTATAAAATTTTAA+GGG | + | chr5_1:37775035-37775054 | None:intergenic | 5.0% |
| !!! | AAAAACATTATAAAATTTTA+AGG | + | chr5_1:37775036-37775055 | None:intergenic | 5.0% |
| !! | GGTTGACTTGCCACACCTTA+TGG | - | chr5_1:37774013-37774032 | Msa0729790:intron | 50.0% |
| GAGGACAGAGTACATGGCAT+TGG | + | chr5_1:37775153-37775172 | None:intergenic | 50.0% | |
| !!! | AGTGGTCGGGTTTTAAACCC+CGG | + | chr5_1:37775223-37775242 | None:intergenic | 50.0% |
| CAACAAAGGGTAACCGTGAC+TGG | - | chr5_1:37776104-37776123 | Msa0729790:intron | 50.0% | |
| !! | AAGCACCTACTGGTTTCGTC+AGG | - | chr5_1:37776249-37776268 | Msa0729790:intron | 50.0% |
| !! | AGCACCTACTGGTTTCGTCA+GGG | - | chr5_1:37776250-37776269 | Msa0729790:intron | 50.0% |
| AGCGCCATCATCTTCAACTC+TGG | + | chr5_1:37776308-37776327 | None:intergenic | 50.0% | |
| !! | GCACCTACTGGTTTCGTCAG+GGG | - | chr5_1:37776251-37776270 | Msa0729790:intron | 55.0% |
| ACACCCCTGACGAAACCAGT+AGG | + | chr5_1:37776257-37776276 | None:intergenic | 55.0% | |
| TTAGGGTCACCCACAGCTTG+CGG | + | chr5_1:37776281-37776300 | None:intergenic | 55.0% | |
| TAGGGTCACCCACAGCTTGC+GGG | + | chr5_1:37776280-37776299 | None:intergenic | 60.0% | |
| !! | AGGGGTGTCCCGCAAGCTGT+GGG | - | chr5_1:37776269-37776288 | Msa0729790:intron | 65.0% |
| !! | CAGGGGTGTCCCGCAAGCTG+TGG | - | chr5_1:37776268-37776287 | Msa0729790:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 37773468 | 37776367 | 37773468 | ID=Msa0729790;Name=Msa0729790 |
| chr5_1 | mRNA | 37773468 | 37776367 | 37773468 | ID=Msa0729790-mRNA-1;Parent=Msa0729790;Name=Msa0729790-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|147 |
| chr5_1 | exon | 37776293 | 37776367 | 37776293 | ID=Msa0729790-mRNA-1:exon:11373;Parent=Msa0729790-mRNA-1 |
| chr5_1 | exon | 37776120 | 37776195 | 37776120 | ID=Msa0729790-mRNA-1:exon:11372;Parent=Msa0729790-mRNA-1 |
| chr5_1 | exon | 37773468 | 37773760 | 37773468 | ID=Msa0729790-mRNA-1:exon:11371;Parent=Msa0729790-mRNA-1 |
| chr5_1 | CDS | 37776293 | 37776367 | 37776293 | ID=Msa0729790-mRNA-1:cds;Parent=Msa0729790-mRNA-1 |
| chr5_1 | CDS | 37776120 | 37776195 | 37776120 | ID=Msa0729790-mRNA-1:cds;Parent=Msa0729790-mRNA-1 |
| chr5_1 | CDS | 37773468 | 37773760 | 37773468 | ID=Msa0729790-mRNA-1:cds;Parent=Msa0729790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
