Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731470 | XP_003615000.1 | 96.040 | 505 | 20 | 0 | 2 | 506 | 1 | 505 | 0.0 | 1008 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731470 | sp|Q7Z9L3|EXGA_ASPOR | 36.940 | 268 | 150 | 11 | 189 | 451 | 48 | 301 | 1.23e-39 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731470 | G7KA56 | 96.040 | 505 | 20 | 0 | 2 | 506 | 1 | 505 | 0.0 | 1008 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0703490 | Msa0731470 | 0.805422 | 1.345448e-49 | -8.615850e-47 |
| Msa0731470 | Msa0809740 | 0.905133 | 5.922229e-80 | -8.615850e-47 |
| Msa0731470 | Msa0850240 | 0.817317 | 3.511058e-52 | -8.615850e-47 |
| Msa0731470 | Msa1213020 | 0.812966 | 3.248990e-51 | -8.615850e-47 |
| Msa0731470 | Msa1300090 | 0.825790 | 3.867367e-54 | -8.615850e-47 |
| Msa0731470 | Msa1397260 | 0.824618 | 7.321825e-54 | -8.615850e-47 |
| Msa0731470 | Msa1401140 | 0.823478 | 1.355917e-53 | -8.615850e-47 |
| Msa0196020 | Msa0731470 | -0.808858 | 2.519506e-50 | -8.615850e-47 |
| Msa0388030 | Msa0731470 | -0.800555 | 1.364258e-48 | -8.615850e-47 |
| Msa0511250 | Msa0731470 | 0.800831 | 1.198464e-48 | -8.615850e-47 |
| Msa0567020 | Msa0731470 | 0.811141 | 8.120578e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731470 | MtrunA17_Chr5g0425401 | 96.040 | 505 | 20 | 0 | 2 | 506 | 1 | 505 | 0.0 | 1008 |
| Msa0731470 | MtrunA17_Chr5g0425361 | 80.473 | 507 | 98 | 1 | 1 | 506 | 1 | 507 | 0.0 | 872 |
| Msa0731470 | MtrunA17_Chr3g0079451 | 55.907 | 474 | 198 | 6 | 37 | 506 | 7 | 473 | 0.0 | 555 |
| Msa0731470 | MtrunA17_Chr3g0079461 | 56.237 | 473 | 198 | 5 | 37 | 506 | 31 | 497 | 0.0 | 555 |
| Msa0731470 | MtrunA17_Chr8g0382641 | 53.937 | 508 | 219 | 8 | 9 | 506 | 4 | 506 | 0.0 | 555 |
| Msa0731470 | MtrunA17_Chr3g0079431 | 53.550 | 493 | 217 | 8 | 15 | 506 | 8 | 489 | 0.0 | 543 |
| Msa0731470 | MtrunA17_Chr3g0079441 | 52.525 | 495 | 221 | 8 | 15 | 506 | 8 | 491 | 0.0 | 535 |
| Msa0731470 | MtrunA17_Chr3g0123661 | 48.734 | 474 | 239 | 2 | 35 | 506 | 34 | 505 | 2.59e-168 | 486 |
| Msa0731470 | MtrunA17_Chr5g0425351 | 59.649 | 228 | 50 | 3 | 221 | 448 | 19 | 204 | 6.28e-85 | 261 |
| Msa0731470 | MtrunA17_Chr5g0425301 | 76.316 | 76 | 18 | 0 | 378 | 453 | 2 | 77 | 1.61e-34 | 124 |
| Msa0731470 | MtrunA17_Chr5g0425291 | 69.841 | 63 | 18 | 1 | 219 | 281 | 19 | 80 | 3.79e-24 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 122 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAGAAACTTTCAGATTT+AGG | 0.092819 | 5_1:-42324009 | Msa0731470:CDS |
| GCCCATAACCATTTGTTATT+TGG | 0.116919 | 5_1:+42322764 | None:intergenic |
| ATCATATATAATCATAATTT+TGG | 0.132461 | 5_1:+42319240 | None:intergenic |
| TTTACATTCTTCTCAGTAAA+TGG | 0.143116 | 5_1:+42319124 | None:intergenic |
| AAAGCTCAATTAGATGTTTA+TGG | 0.183154 | 5_1:-42319365 | Msa0731470:CDS |
| CAAAGAAACTTTCAGATTTA+GGG | 0.194710 | 5_1:-42324008 | Msa0731470:CDS |
| CATTCCAAACAAAGACTTCT+TGG | 0.218905 | 5_1:-42324414 | Msa0731470:intron |
| CCCACTAGCTAATGGCCTTA+TGG | 0.221566 | 5_1:-42319972 | Msa0731470:CDS |
| TGTCACTTTCTTTAACAATA+TGG | 0.234715 | 5_1:+42323906 | None:intergenic |
| CAACATTTGGGTATGCATAT+TGG | 0.248323 | 5_1:-42319337 | Msa0731470:CDS |
| AACATTTGGGTATGCATATT+GGG | 0.291161 | 5_1:-42319336 | Msa0731470:CDS |
| GTCCACTACTACAGCATCTT+TGG | 0.300446 | 5_1:-42319935 | Msa0731470:CDS |
| TTCAATCTAAACTTCTGATT+TGG | 0.308423 | 5_1:+42324500 | None:intergenic |
| CCACTAGCTAATGGCCTTAT+GGG | 0.309837 | 5_1:-42319971 | Msa0731470:CDS |
| TTCAAATGGTTACTTCCTTC+AGG | 0.315081 | 5_1:-42323858 | Msa0731470:intron |
| TTCCAAATAACAAATGGTTA+TGG | 0.317163 | 5_1:-42322766 | Msa0731470:CDS |
| TGATGTATCTGCAGAAAATA+TGG | 0.318498 | 5_1:-42320621 | Msa0731470:intron |
| AATGATACCTTCATTATTTG+TGG | 0.330176 | 5_1:+42322730 | None:intergenic |
| GCACTCTTCTATTGTATTTG+TGG | 0.331566 | 5_1:-42320038 | Msa0731470:CDS |
| CTACAAGATGGTAGTCCTTC+TGG | 0.333119 | 5_1:+42318957 | Msa0731460:CDS |
| CTAACCAAGAAGTCTTTGTT+TGG | 0.336732 | 5_1:+42324410 | None:intergenic |
| GCAAACCGCTCAAGTGCTTC+TGG | 0.344807 | 5_1:-42324169 | Msa0731470:CDS |
| GTTGCTGAGTGGCAAGTTAA+AGG | 0.346227 | 5_1:-42319419 | Msa0731470:CDS |
| GCAGCACCTGGCTCTCAAAA+TGG | 0.347913 | 5_1:-42320573 | Msa0731470:CDS |
| TTGTAATGACAATTTCTGAT+AGG | 0.372703 | 5_1:-42322801 | Msa0731470:CDS |
| TCCAAATAACAAATGGTTAT+GGG | 0.378270 | 5_1:-42322765 | Msa0731470:CDS |
| AATAAAATCTTTGTCTAAAC+CGG | 0.378551 | 5_1:+42319040 | None:intergenic |
| ACTGTATCAACCTCAAAATA+TGG | 0.385596 | 5_1:-42324577 | Msa0731470:CDS |
| GTGGTGTTCTCAAATAGATT+AGG | 0.388703 | 5_1:-42320019 | Msa0731470:CDS |
| AAGCTCAATTAGATGTTTAT+GGG | 0.389186 | 5_1:-42319364 | Msa0731470:CDS |
| TGCATTGTCTAGTGCTTGTA+AGG | 0.406879 | 5_1:+42320985 | None:intergenic |
| TTACATTCTTCTCAGTAAAT+GGG | 0.410046 | 5_1:+42319125 | None:intergenic |
| AAGAGACGGTTCACAAGAAT+GGG | 0.412119 | 5_1:-42320532 | Msa0731470:CDS |
| CCGCTCAAGTGCTTCTGGTT+GGG | 0.413588 | 5_1:-42324164 | Msa0731470:CDS |
| TGAATTTGATTCAAGGTGAA+TGG | 0.419560 | 5_1:-42319442 | Msa0731470:intron |
| GTTTATGGGAGAGCAACATT+TGG | 0.420478 | 5_1:-42319350 | Msa0731470:CDS |
| CAAGAGACGGTTCACAAGAA+TGG | 0.421390 | 5_1:-42320533 | Msa0731470:CDS |
| CAAGAAGTCTTTGTTTGGAA+TGG | 0.421693 | 5_1:+42324415 | None:intergenic |
| AAATATTTATGTGCAGAGTC+TGG | 0.425241 | 5_1:-42324211 | Msa0731470:CDS |
| AGAGTGAAGTACTTAAATAA+AGG | 0.430103 | 5_1:+42319197 | None:intergenic |
| ATGGAATGTTTCAGAATCAA+TGG | 0.438369 | 5_1:+42323925 | None:intergenic |
| TTAAGAGCAGTGGCATATAT+AGG | 0.439409 | 5_1:+42324661 | None:intergenic |
| TTCTTCTCAGTAAATGGGAT+TGG | 0.442442 | 5_1:+42319130 | None:intergenic |
| GTTGGTTAGTTACTGAAGGT+TGG | 0.444141 | 5_1:-42324460 | Msa0731470:CDS |
| TTTATGGGAGAGCAACATTT+GGG | 0.445671 | 5_1:-42319349 | Msa0731470:CDS |
| GAATTCTTCCCACTAGCTAA+TGG | 0.452097 | 5_1:-42319980 | Msa0731470:CDS |
| TGTTTAACAAACAATTTGTC+GGG | 0.459770 | 5_1:-42323985 | Msa0731470:CDS |
| AAACAATTTGTCGGGTTGGA+TGG | 0.472616 | 5_1:-42323977 | Msa0731470:CDS |
| AATGTATGCACCTTGCAGTT+AGG | 0.476338 | 5_1:+42320463 | None:intergenic |
| TTAGAATTCCAGTGGGTTGG+TGG | 0.482622 | 5_1:-42321051 | Msa0731470:CDS |
| GTTCGAATCAAAGCTTCAAA+TGG | 0.488169 | 5_1:-42323872 | Msa0731470:CDS |
| GTGTTTAACAAACAATTTGT+CGG | 0.489286 | 5_1:-42323986 | Msa0731470:CDS |
| ATGATTTCAAGTTCATAGCT+AGG | 0.494652 | 5_1:-42321090 | Msa0731470:CDS |
| GGTGAATTCCAAATAACAAA+TGG | 0.496193 | 5_1:-42322772 | Msa0731470:CDS |
| TTCAAGTTCATAGCTAGGAA+TGG | 0.498346 | 5_1:-42321085 | Msa0731470:CDS |
| CATATATAGGCGATAGGTGA+TGG | 0.498878 | 5_1:+42324674 | None:intergenic |
| GAATTTGATTCAAGGTGAAT+GGG | 0.499572 | 5_1:-42319441 | Msa0731470:intron |
| ATTGATCTTCATGCAGCACC+TGG | 0.500988 | 5_1:-42320585 | Msa0731470:CDS |
| TTGAAAGCAGTTAACCTTGG+TGG | 0.501297 | 5_1:-42324482 | Msa0731470:CDS |
| ACCGCTCAAGTGCTTCTGGT+TGG | 0.501991 | 5_1:-42324165 | Msa0731470:CDS |
| TAACAAACAATTTGTCGGGT+TGG | 0.505301 | 5_1:-42323981 | Msa0731470:CDS |
| GTTCATATTTCCAGGAACAT+TGG | 0.506200 | 5_1:-42321132 | Msa0731470:intron |
| ACAAACATTGGAGTCTAGAA+TGG | 0.506920 | 5_1:-42319298 | Msa0731470:CDS |
| CATCAATCACTGATCCCATA+AGG | 0.530630 | 5_1:+42319957 | None:intergenic |
| TGAAGCTTTGATTCGAACAC+GGG | 0.534321 | 5_1:+42323877 | None:intergenic |
| ACGTAGGGCCATGGTGGAGT+TGG | 0.534619 | 5_1:+42321016 | None:intergenic |
| TGCTTTCTAATTAAGAGCAG+TGG | 0.534790 | 5_1:+42324651 | None:intergenic |
| CAGTTAGAATTCCAGTGGGT+TGG | 0.535426 | 5_1:-42321054 | Msa0731470:CDS |
| GAAAGCTCCACAAATAATGA+AGG | 0.536911 | 5_1:-42322737 | Msa0731470:intron |
| GGTGGTTGGTTAGTTACTGA+AGG | 0.539181 | 5_1:-42324464 | Msa0731470:CDS |
| CTAGAATGGATGATGAAGAA+TGG | 0.541024 | 5_1:-42319284 | Msa0731470:CDS |
| CTCCAAAGATGCTGTAGTAG+TGG | 0.542320 | 5_1:+42319933 | None:intergenic |
| CACTTGAGCGGTTTGCAACA+AGG | 0.546295 | 5_1:+42324176 | None:intergenic |
| AGTTCAACTGCATAAAGACT+TGG | 0.555048 | 5_1:+42320142 | None:intergenic |
| TTTATAGTTCTATTCTAGGA+GGG | 0.556602 | 5_1:-42324711 | Msa0731470:five_prime_UTR |
| GGAATGGCATCAAAGAGAGA+AGG | 0.557255 | 5_1:+42324431 | None:intergenic |
| TTGAACAAATACTACAAGGA+TGG | 0.560573 | 5_1:-42320079 | Msa0731470:CDS |
| TGGGAAGAATTCTCTAGGCA+TGG | 0.562307 | 5_1:+42319991 | None:intergenic |
| GTAGCTATCCACCAACCCAC+TGG | 0.563066 | 5_1:+42321043 | None:intergenic |
| AGTGTTGCACCAGGTGATAG+AGG | 0.563249 | 5_1:+42320109 | None:intergenic |
| GAACCTCCCACGTAGGGCCA+TGG | 0.568301 | 5_1:+42321007 | None:intergenic |
| TCAAGAACGTGAACAAACAT+TGG | 0.571265 | 5_1:-42319310 | Msa0731470:CDS |
| ATGTATCACTGGTCAACGGA+TGG | 0.572840 | 5_1:-42322846 | Msa0731470:CDS |
| GCTAGTGGGAAGAATTCTCT+AGG | 0.574726 | 5_1:+42319986 | None:intergenic |
| AGATTGAAAGCAGTTAACCT+TGG | 0.578195 | 5_1:-42324485 | Msa0731470:CDS |
| CTGATTTGGTCTCCCATGTG+TGG | 0.583392 | 5_1:+42324514 | None:intergenic |
| TGTAAGGAACCTCCCACGTA+GGG | 0.583435 | 5_1:+42321001 | None:intergenic |
| CCATAAGGCCATTAGCTAGT+GGG | 0.583955 | 5_1:+42319972 | None:intergenic |
| CCCATAAGGCCATTAGCTAG+TGG | 0.585533 | 5_1:+42319971 | None:intergenic |
| TATTTACAATAATCGCTCAT+CGG | 0.585988 | 5_1:-42319870 | Msa0731470:CDS |
| CCTCCCACGTAGGGCCATGG+TGG | 0.588737 | 5_1:+42321010 | None:intergenic |
| CCCAACCAGAAGCACTTGAG+CGG | 0.589670 | 5_1:+42324164 | None:intergenic |
| ACAATTTCTGATAGGATGCA+AGG | 0.592346 | 5_1:-42322793 | Msa0731470:CDS |
| TTAAATGAGCCTCTATCACC+TGG | 0.593108 | 5_1:-42320118 | Msa0731470:CDS |
| GGTGACCGCTGATGTATCAC+TGG | 0.594191 | 5_1:-42322857 | Msa0731470:CDS |
| AAGCAGTTAACCTTGGTGGT+TGG | 0.594358 | 5_1:-42324478 | Msa0731470:CDS |
| AAACTAGTTCAAAACACGAC+CGG | 0.595657 | 5_1:-42319059 | Msa0731470:three_prime_UTR |
| AGCTTTGATTCGAACACGGG+TGG | 0.598897 | 5_1:+42323880 | None:intergenic |
| TTGAAGCTTTGATTCGAACA+CGG | 0.599020 | 5_1:+42323876 | None:intergenic |
| AACTCCACCATGGCCCTACG+TGG | 0.599934 | 5_1:-42321014 | Msa0731470:CDS |
| TTATGTGCAGAGTCTGGAGG+AGG | 0.600028 | 5_1:-42324205 | Msa0731470:CDS |
| GTGAGATTGGCACTACAAGA+TGG | 0.601933 | 5_1:+42318945 | Msa0731460:CDS |
| CCACCATGGCCCTACGTGGG+AGG | 0.603970 | 5_1:-42321010 | Msa0731470:CDS |
| AAACTTTCTAGTGTTGCACC+AGG | 0.604496 | 5_1:+42320100 | None:intergenic |
| AAATGCAGTTAGAATTCCAG+TGG | 0.605969 | 5_1:-42321059 | Msa0731470:CDS |
| CAGTGGCATATATAGGCGAT+AGG | 0.608675 | 5_1:+42324668 | None:intergenic |
| GAGCATAGCTCTTCAAGAGA+CGG | 0.613874 | 5_1:-42320546 | Msa0731470:CDS |
| TTGTAAGGAACCTCCCACGT+AGG | 0.623751 | 5_1:+42321000 | None:intergenic |
| GCAGGCAAAGACAGAAGAGG+TGG | 0.646021 | 5_1:-42322878 | Msa0731470:intron |
| TTTGCAGGCAAAGACAGAAG+AGG | 0.648909 | 5_1:-42322881 | Msa0731470:intron |
| AATGCAGTTAGAATTCCAGT+GGG | 0.652546 | 5_1:-42321058 | Msa0731470:CDS |
| TCATTGACTTCCTAACTGCA+AGG | 0.656279 | 5_1:-42320473 | Msa0731470:intron |
| AAGTTTGAACAAATACTACA+AGG | 0.657848 | 5_1:-42320083 | Msa0731470:CDS |
| ACTCCACCATGGCCCTACGT+GGG | 0.663058 | 5_1:-42321013 | Msa0731470:CDS |
| TATTTATGTGCAGAGTCTGG+AGG | 0.678947 | 5_1:-42324208 | Msa0731470:CDS |
| GCTGATGTATCACTGGTCAA+CGG | 0.681871 | 5_1:-42322850 | Msa0731470:CDS |
| GAAGAATTCTCTAGGCATGG+AGG | 0.695443 | 5_1:+42319994 | None:intergenic |
| CTACTGATCCAACTCCACCA+TGG | 0.707550 | 5_1:-42321024 | Msa0731470:CDS |
| CAGTAACTAACCAACCACCA+AGG | 0.717154 | 5_1:+42324468 | None:intergenic |
| AGAGACGGTTCACAAGAATG+GGG | 0.726094 | 5_1:-42320531 | Msa0731470:CDS |
| AAGGTGAATGGGTTGCTGAG+TGG | 0.733038 | 5_1:-42319430 | Msa0731470:CDS |
| GTTGACCAGTGATACATCAG+CGG | 0.736082 | 5_1:+42322852 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTGTAAAATTTATAGA+TGG | + | chr5_1:42320393-42320412 | None:intergenic | 10.0% |
| !!! | TTTCTTTATAATTTTTTTAG+AGG | - | chr5_1:42320715-42320734 | Msa0731470:intron | 10.0% |
| !! | TATTATTGTATTATAAAAAG+AGG | - | chr5_1:42320746-42320765 | Msa0731470:intron | 10.0% |
| !! | ATTAAAGTAAAAAATAACTT+TGG | + | chr5_1:42321122-42321141 | None:intergenic | 10.0% |
| !!! | TTTACTTTAATTTATAATGA+TGG | - | chr5_1:42321131-42321150 | Msa0731470:intron | 10.0% |
| !!! | TTACTTTAATTTATAATGAT+GGG | - | chr5_1:42321132-42321151 | Msa0731470:intron | 10.0% |
| !! | TAACAAAATGAAAAATAATT+TGG | - | chr5_1:42321693-42321712 | Msa0731470:intron | 10.0% |
| !! | AACAAAATGAAAAATAATTT+GGG | - | chr5_1:42321694-42321713 | Msa0731470:intron | 10.0% |
| !! | TTATTCAATAATTATTATTG+AGG | + | chr5_1:42322337-42322356 | None:intergenic | 10.0% |
| !! | TACAATATACAAATAAATTT+GGG | + | chr5_1:42322494-42322513 | None:intergenic | 10.0% |
| !! | AATAATTATTACTTATATCA+TGG | + | chr5_1:42323440-42323459 | None:intergenic | 10.0% |
| !!! | ATCATATATAATCATAATTT+TGG | + | chr5_1:42324428-42324447 | None:intergenic | 10.0% |
| !!! | TCTATATATTTTTAATAGGA+TGG | - | chr5_1:42319397-42319416 | Msa0731470:CDS | 15.0% |
| !! | ACACAAAATAAATAAATATG+AGG | + | chr5_1:42319616-42319635 | None:intergenic | 15.0% |
| !! | AAAAGCCTATTAATTTAATT+AGG | - | chr5_1:42320059-42320078 | Msa0731470:CDS | 15.0% |
| !! | AACTGAAATAATAATAATTG+TGG | + | chr5_1:42320221-42320240 | None:intergenic | 15.0% |
| !!! | TATTTCAGTTTTTTTTTGTA+TGG | - | chr5_1:42320231-42320250 | Msa0731470:intron | 15.0% |
| !!! | TGTTAGAATATTTTTGTTTT+TGG | - | chr5_1:42321532-42321551 | Msa0731470:intron | 15.0% |
| !! | ATGAGAAAAAAAAAATTGAA+TGG | + | chr5_1:42321856-42321875 | None:intergenic | 15.0% |
| !! | AAAAAAAACAGAAAATAATG+CGG | - | chr5_1:42321914-42321933 | Msa0731470:intron | 15.0% |
| !!! | AATCTTAATAATTGATAATG+TGG | + | chr5_1:42321958-42321977 | None:intergenic | 15.0% |
| !! | CTTCAAAAAAAAAAAAAAAG+TGG | + | chr5_1:42322065-42322084 | None:intergenic | 15.0% |
| !! | AATAAAAAGGAAAATATACT+TGG | + | chr5_1:42322126-42322145 | None:intergenic | 15.0% |
| !! | GTACAATATACAAATAAATT+TGG | + | chr5_1:42322495-42322514 | None:intergenic | 15.0% |
| !! | AAAACGATTTATATTAAGAA+TGG | + | chr5_1:42323885-42323904 | None:intergenic | 15.0% |
| !!! | ATATTTTTAATAGGATGGAA+CGG | - | chr5_1:42319402-42319421 | Msa0731470:CDS | 20.0% |
| !! | TGAAATTTGTAACATAAACT+AGG | - | chr5_1:42320509-42320528 | Msa0731470:CDS | 20.0% |
| !! | ATTATAAAAAGAGGAATTCA+TGG | - | chr5_1:42320755-42320774 | Msa0731470:intron | 20.0% |
| !! | TTGTCATTACAAAAATTGTT+GGG | + | chr5_1:42320856-42320875 | None:intergenic | 20.0% |
| !! | ATTGTCATTACAAAAATTGT+TGG | + | chr5_1:42320857-42320876 | None:intergenic | 20.0% |
| !!! | AAGTGACATTCATTTTAAAA+CGG | + | chr5_1:42320994-42321013 | None:intergenic | 20.0% |
| !!! | ATAATAATTAAGGGTACTAT+AGG | + | chr5_1:42321085-42321104 | None:intergenic | 20.0% |
| !! | GTGTGCATAATAATAATTAA+GGG | + | chr5_1:42321094-42321113 | None:intergenic | 20.0% |
| !! | TGTGTGCATAATAATAATTA+AGG | + | chr5_1:42321095-42321114 | None:intergenic | 20.0% |
| !!! | TTTAAAATGAATGTCGTTTT+AGG | + | chr5_1:42321244-42321263 | None:intergenic | 20.0% |
| !!! | AAACGACATTCATTTTAAAA+CGG | - | chr5_1:42321245-42321264 | Msa0731470:intron | 20.0% |
| !! | GAGAAGTTAATAATAACTTT+AGG | - | chr5_1:42321328-42321347 | Msa0731470:intron | 20.0% |
| !! | AAAATACCTAGTTAAAATGT+AGG | - | chr5_1:42321362-42321381 | Msa0731470:intron | 20.0% |
| !!! | ATGAAGTGTTAATATTTCAT+TGG | + | chr5_1:42321402-42321421 | None:intergenic | 20.0% |
| !! | TTATATATATGTATGTGTCA+GGG | + | chr5_1:42321599-42321618 | None:intergenic | 20.0% |
| !! | TTTATATATATGTATGTGTC+AGG | + | chr5_1:42321600-42321619 | None:intergenic | 20.0% |
| !! | TGAAAAATAATTTGGGAAAA+AGG | - | chr5_1:42321701-42321720 | Msa0731470:intron | 20.0% |
| !! | GAAAAATAATTTGGGAAAAA+GGG | - | chr5_1:42321702-42321721 | Msa0731470:intron | 20.0% |
| !! | CTTAATAAGTGTATAAAAAG+TGG | + | chr5_1:42322096-42322115 | None:intergenic | 20.0% |
| !!! | CACTTTTTATACACTTATTA+AGG | - | chr5_1:42322094-42322113 | Msa0731470:intron | 20.0% |
| !!! | ATAAATTTGGGTTTAATTCT+TGG | + | chr5_1:42322482-42322501 | None:intergenic | 20.0% |
| !! | AAAATGTTAGTGACAAAAAA+TGG | - | chr5_1:42322759-42322778 | Msa0731470:CDS | 20.0% |
| !! | ATTGTGATTTACAGTAAAAA+TGG | + | chr5_1:42322975-42322994 | None:intergenic | 20.0% |
| !! | TTTAAATGTCACTGATAATA+GGG | - | chr5_1:42323014-42323033 | Msa0731470:intron | 20.0% |
| !!! | TCTATATTTTTATGTGTCAT+AGG | - | chr5_1:42323488-42323507 | Msa0731470:intron | 20.0% |
| !! | TTGAAAATGACACTATAAAA+TGG | + | chr5_1:42323913-42323932 | None:intergenic | 20.0% |
| !!! | TCATGGTCAATTATTTTTTA+AGG | + | chr5_1:42324018-42324037 | None:intergenic | 20.0% |
| !!! | TATCGTTTTTCTTTTATACT+GGG | + | chr5_1:42324081-42324100 | None:intergenic | 20.0% |
| !!! | ATATCGTTTTTCTTTTATAC+TGG | + | chr5_1:42324082-42324101 | None:intergenic | 20.0% |
| !! | AAAAATGACTACAAAAGATT+TGG | - | chr5_1:42324276-42324295 | Msa0731470:intron | 20.0% |
| !! | AATAAAATCTTTGTCTAAAC+CGG | + | chr5_1:42324628-42324647 | None:intergenic | 20.0% |
| !!! | TTTTATAGTTCTATTCTAGG+AGG | - | chr5_1:42318953-42318972 | Msa0731470:three_prime_UTR | 25.0% |
| !! | TTTATAGTTCTATTCTAGGA+GGG | - | chr5_1:42318954-42318973 | Msa0731470:three_prime_UTR | 25.0% |
| !! | AGTTAAGAAACCATATTTTG+AGG | + | chr5_1:42319101-42319120 | None:intergenic | 25.0% |
| ! | TTCAATCTAAACTTCTGATT+TGG | + | chr5_1:42319168-42319187 | None:intergenic | 25.0% |
| !!! | TATTTTTAATAGGATGGAAC+GGG | - | chr5_1:42319403-42319422 | Msa0731470:CDS | 25.0% |
| ! | ACAAAGAAACTTTCAGATTT+AGG | - | chr5_1:42319656-42319675 | Msa0731470:intron | 25.0% |
| ! | CAAAGAAACTTTCAGATTTA+GGG | - | chr5_1:42319657-42319676 | Msa0731470:intron | 25.0% |
| ! | GTGTTTAACAAACAATTTGT+CGG | - | chr5_1:42319679-42319698 | Msa0731470:intron | 25.0% |
| ! | TGTTTAACAAACAATTTGTC+GGG | - | chr5_1:42319680-42319699 | Msa0731470:intron | 25.0% |
| !!! | TGTCACTTTCTTTAACAATA+TGG | + | chr5_1:42319762-42319781 | None:intergenic | 25.0% |
| ! | TCCCTTCGTTATAAATAAAA+CGG | - | chr5_1:42319853-42319872 | Msa0731470:CDS | 25.0% |
| ! | TTTCTTTAAATAGTGTCACA+AGG | - | chr5_1:42319917-42319936 | Msa0731470:CDS | 25.0% |
| ! | TTCTTTAAATAGTGTCACAA+GGG | - | chr5_1:42319918-42319937 | Msa0731470:CDS | 25.0% |
| ! | CCTAGCCTAATTAAATTAAT+AGG | + | chr5_1:42320067-42320086 | None:intergenic | 25.0% |
| ! | CCTATTAATTTAATTAGGCT+AGG | - | chr5_1:42320064-42320083 | Msa0731470:CDS | 25.0% |
| ! | TATATTTGTGTGAACTGTTA+AGG | - | chr5_1:42320275-42320294 | Msa0731470:intron | 25.0% |
| ! | TAATAACCATACTTGACATT+AGG | + | chr5_1:42320316-42320335 | None:intergenic | 25.0% |
| ! | TTGTAATGACAATTTCTGAT+AGG | - | chr5_1:42320864-42320883 | Msa0731470:intron | 25.0% |
| ! | TTCCAAATAACAAATGGTTA+TGG | - | chr5_1:42320899-42320918 | Msa0731470:intron | 25.0% |
| ! | TCCAAATAACAAATGGTTAT+GGG | - | chr5_1:42320900-42320919 | Msa0731470:intron | 25.0% |
| ! | AATGATACCTTCATTATTTG+TGG | + | chr5_1:42320938-42320957 | None:intergenic | 25.0% |
| ! | AAATGCATCAATAGTTAACA+AGG | - | chr5_1:42321155-42321174 | Msa0731470:intron | 25.0% |
| !!! | CAAGGTTATTTTAGTGAAAA+TGG | - | chr5_1:42321173-42321192 | Msa0731470:intron | 25.0% |
| ! | AAAAGGAAAATATACTTGGT+GGG | + | chr5_1:42322122-42322141 | None:intergenic | 25.0% |
| ! | AAAAAGGAAAATATACTTGG+TGG | + | chr5_1:42322123-42322142 | None:intergenic | 25.0% |
| ! | AGTCATTAAGGTAATCTTAT+TGG | - | chr5_1:42322198-42322217 | Msa0731470:intron | 25.0% |
| ! | GTCATTAAGGTAATCTTATT+GGG | - | chr5_1:42322199-42322218 | Msa0731470:intron | 25.0% |
| ! | CATCTACTAACAAAAAAAGT+TGG | + | chr5_1:42322238-42322257 | None:intergenic | 25.0% |
| !!! | CAACTTTTTTTGTTAGTAGA+TGG | - | chr5_1:42322236-42322255 | Msa0731470:intron | 25.0% |
| ! | TTAAATATCCAGTAAGTCAA+TGG | + | chr5_1:42322276-42322295 | None:intergenic | 25.0% |
| ! | ACGATATTTAATGTTTAGCA+TGG | + | chr5_1:42322314-42322333 | None:intergenic | 25.0% |
| !!! | AAAGAATCTCATTTAGTTTG+TGG | + | chr5_1:42322726-42322745 | None:intergenic | 25.0% |
| ! | TTAGACGAAATCAATGTATT+TGG | + | chr5_1:42322828-42322847 | None:intergenic | 25.0% |
| ! | ATAACCAAATGCAATTGATA+TGG | - | chr5_1:42322905-42322924 | Msa0731470:intron | 25.0% |
| ! | CTTTAAATGTCACTGATAAT+AGG | - | chr5_1:42323013-42323032 | Msa0731470:intron | 25.0% |
| ! | TAATGTCATATTATGAAGCA+CGG | + | chr5_1:42323403-42323422 | None:intergenic | 25.0% |
| ! | AAGTTTGAACAAATACTACA+AGG | - | chr5_1:42323582-42323601 | Msa0731470:intron | 25.0% |
| ! | TATTTACAATAATCGCTCAT+CGG | - | chr5_1:42323795-42323814 | Msa0731470:intron | 25.0% |
| !! | AATTTTGTTACAACCTCAAA+TGG | - | chr5_1:42323823-42323842 | Msa0731470:intron | 25.0% |
| !! | GGTTATATTTTCTCTCAAAA+AGG | + | chr5_1:42324060-42324079 | None:intergenic | 25.0% |
| ! | AACAATGTGAATTTGATTCA+AGG | - | chr5_1:42324216-42324235 | Msa0731470:CDS | 25.0% |
| ! | AAAGCTCAATTAGATGTTTA+TGG | - | chr5_1:42324300-42324319 | Msa0731470:intron | 25.0% |
| ! | AAGCTCAATTAGATGTTTAT+GGG | - | chr5_1:42324301-42324320 | Msa0731470:intron | 25.0% |
| !! | AGAGTGAAGTACTTAAATAA+AGG | + | chr5_1:42324471-42324490 | None:intergenic | 25.0% |
| ! | TTACATTCTTCTCAGTAAAT+GGG | + | chr5_1:42324543-42324562 | None:intergenic | 25.0% |
| ! | TTTACATTCTTCTCAGTAAA+TGG | + | chr5_1:42324544-42324563 | None:intergenic | 25.0% |
| ACTGTATCAACCTCAAAATA+TGG | - | chr5_1:42319088-42319107 | Msa0731470:three_prime_UTR | 30.0% | |
| AAATATTTATGTGCAGAGTC+TGG | - | chr5_1:42319454-42319473 | Msa0731470:intron | 30.0% | |
| ! | TATTTTGTGTATTGCAGTTG+TGG | - | chr5_1:42319626-42319645 | Msa0731470:intron | 30.0% |
| ATGGAATGTTTCAGAATCAA+TGG | + | chr5_1:42319743-42319762 | None:intergenic | 30.0% | |
| AAAGTTAGTATATCACCTGA+AGG | + | chr5_1:42319825-42319844 | None:intergenic | 30.0% | |
| !!! | CCCGTTTTATTTATAACGAA+GGG | + | chr5_1:42319857-42319876 | None:intergenic | 30.0% |
| CCCTTCGTTATAAATAAAAC+GGG | - | chr5_1:42319854-42319873 | Msa0731470:CDS | 30.0% | |
| !!! | TCCCGTTTTATTTATAACGA+AGG | + | chr5_1:42319858-42319877 | None:intergenic | 30.0% |
| TTCGTTATAAATAAAACGGG+AGG | - | chr5_1:42319857-42319876 | Msa0731470:CDS | 30.0% | |
| GCCTAACTCGTTTAATAAAT+GGG | - | chr5_1:42320018-42320037 | Msa0731470:CDS | 30.0% | |
| ACCCATTTATTAAACGAGTT+AGG | + | chr5_1:42320022-42320041 | None:intergenic | 30.0% | |
| AATTTAATTAGGCTAGGCTT+AGG | - | chr5_1:42320070-42320089 | Msa0731470:CDS | 30.0% | |
| TAATATACTCGTATACGATC+CGG | + | chr5_1:42320126-42320145 | None:intergenic | 30.0% | |
| ATTGTGGTATGAGAATTTGA+AGG | + | chr5_1:42320205-42320224 | None:intergenic | 30.0% | |
| AATCATGTCTGATAATAGCA+AGG | + | chr5_1:42320354-42320373 | None:intergenic | 30.0% | |
| !!! | CTGTCAAAGGCTTTATTTTA+AGG | + | chr5_1:42320586-42320605 | None:intergenic | 30.0% |
| CTTAAAATAAAGCCTTTGAC+AGG | - | chr5_1:42320584-42320603 | Msa0731470:CDS | 30.0% | |
| ATGCTCATGATTCATGAATA+GGG | + | chr5_1:42320695-42320714 | None:intergenic | 30.0% | |
| AATGCTCATGATTCATGAAT+AGG | + | chr5_1:42320696-42320715 | None:intergenic | 30.0% | |
| GGTGAATTCCAAATAACAAA+TGG | - | chr5_1:42320893-42320912 | Msa0731470:intron | 30.0% | |
| !!! | GACATTCATTTTAAAACGGA+TGG | - | chr5_1:42321249-42321268 | Msa0731470:intron | 30.0% |
| TTTCAAATTCTAAGCACAAG+TGG | - | chr5_1:42321294-42321313 | Msa0731470:intron | 30.0% | |
| !!! | GATGATCCTACATTTTAACT+AGG | + | chr5_1:42321371-42321390 | None:intergenic | 30.0% |
| TTTGTACATCCTATATTCTC+AGG | - | chr5_1:42321759-42321778 | Msa0731470:intron | 30.0% | |
| TTAATCTTGACCATTGTCAT+TGG | - | chr5_1:42321983-42322002 | Msa0731470:intron | 30.0% | |
| TGCTAGTTGCGATAATAAAA+AGG | + | chr5_1:42322139-42322158 | None:intergenic | 30.0% | |
| TCCAATTAAGACAGTCATTA+AGG | - | chr5_1:42322186-42322205 | Msa0731470:intron | 30.0% | |
| ACCTTAATGACTGTCTTAAT+TGG | + | chr5_1:42322190-42322209 | None:intergenic | 30.0% | |
| CTACTAACAAAAAAAGTTGG+TGG | + | chr5_1:42322235-42322254 | None:intergenic | 30.0% | |
| TTGTACATGTAAACGTTTCA+CGG | - | chr5_1:42322509-42322528 | Msa0731470:intron | 30.0% | |
| !! | ATGATTTCAAGTTCATAGCT+AGG | - | chr5_1:42322575-42322594 | Msa0731470:intron | 30.0% |
| ! | ACTAGACAATGCATTTTTGT+GGG | - | chr5_1:42322690-42322709 | Msa0731470:intron | 30.0% |
| ! | TGGTGATGTAAATGATTCAA+AGG | + | chr5_1:42322808-42322827 | None:intergenic | 30.0% |
| ACAACCATATCAATTGCATT+TGG | + | chr5_1:42322912-42322931 | None:intergenic | 30.0% | |
| TGATGTATCTGCAGAAAATA+TGG | - | chr5_1:42323044-42323063 | Msa0731470:intron | 30.0% | |
| TACATATAAGCAATGAAGCA+CGG | - | chr5_1:42323224-42323243 | Msa0731470:intron | 30.0% | |
| ! | TTTTCTCAAATTATCCGTGT+CGG | - | chr5_1:42323336-42323355 | Msa0731470:intron | 30.0% |
| TTGAACAAATACTACAAGGA+TGG | - | chr5_1:42323586-42323605 | Msa0731470:intron | 30.0% | |
| AAAAATAAGAGGACCATTTG+AGG | + | chr5_1:42323839-42323858 | None:intergenic | 30.0% | |
| !!! | AATGGTCCTCTTATTTTTGT+CGG | - | chr5_1:42323841-42323860 | Msa0731470:intron | 30.0% |
| TACTAACCGACAAAAATAAG+AGG | + | chr5_1:42323850-42323869 | None:intergenic | 30.0% | |
| AAGTCAAAGAATCAAACTCA+TGG | + | chr5_1:42324035-42324054 | None:intergenic | 30.0% | |
| CTATGAGACTAATCTTCAAA+TGG | + | chr5_1:42324111-42324130 | None:intergenic | 30.0% | |
| TGAATTTGATTCAAGGTGAA+TGG | - | chr5_1:42324223-42324242 | Msa0731470:CDS | 30.0% | |
| GAATTTGATTCAAGGTGAAT+GGG | - | chr5_1:42324224-42324243 | Msa0731470:CDS | 30.0% | |
| AACATTTGGGTATGCATATT+GGG | - | chr5_1:42324329-42324348 | Msa0731470:intron | 30.0% | |
| TTAAGAGCAGTGGCATATAT+AGG | + | chr5_1:42319007-42319026 | None:intergenic | 35.0% | |
| TGCTTTCTAATTAAGAGCAG+TGG | + | chr5_1:42319017-42319036 | None:intergenic | 35.0% | |
| ! | TTTTGCTTTCTACCACACAT+GGG | - | chr5_1:42319139-42319158 | Msa0731470:three_prime_UTR | 35.0% |
| AGATTGAAAGCAGTTAACCT+TGG | - | chr5_1:42319180-42319199 | Msa0731470:three_prime_UTR | 35.0% | |
| ! | CAAGAAGTCTTTGTTTGGAA+TGG | + | chr5_1:42319253-42319272 | None:intergenic | 35.0% |
| CATTCCAAACAAAGACTTCT+TGG | - | chr5_1:42319251-42319270 | Msa0731470:exon | 35.0% | |
| CTAACCAAGAAGTCTTTGTT+TGG | + | chr5_1:42319258-42319277 | None:intergenic | 35.0% | |
| TAACAAACAATTTGTCGGGT+TGG | - | chr5_1:42319684-42319703 | Msa0731470:intron | 35.0% | |
| ! | TTGAAGCTTTGATTCGAACA+CGG | + | chr5_1:42319792-42319811 | None:intergenic | 35.0% |
| GTTCGAATCAAAGCTTCAAA+TGG | - | chr5_1:42319793-42319812 | Msa0731470:intron | 35.0% | |
| TTCAAATGGTTACTTCCTTC+AGG | - | chr5_1:42319807-42319826 | Msa0731470:intron | 35.0% | |
| GGCCTAACTCGTTTAATAAA+TGG | - | chr5_1:42320017-42320036 | Msa0731470:CDS | 35.0% | |
| AAAAGTCTATCAAGCCTATC+AGG | - | chr5_1:42320100-42320119 | Msa0731470:CDS | 35.0% | |
| GTTATGCCTAATGTCAAGTA+TGG | - | chr5_1:42320307-42320326 | Msa0731470:intron | 35.0% | |
| AGTACGTTGCACAAATTGAA+AGG | - | chr5_1:42320457-42320476 | Msa0731470:intron | 35.0% | |
| ! | CATAAACTAGGCTTTTAGAC+AGG | - | chr5_1:42320521-42320540 | Msa0731470:CDS | 35.0% |
| !!! | GCTTTTTTAAAAGTCTGACC+AGG | + | chr5_1:42320555-42320574 | None:intergenic | 35.0% |
| !!! | CAAAGGCTTTATTTTAAGGC+TGG | + | chr5_1:42320582-42320601 | None:intergenic | 35.0% |
| TAAAGCCTTTGACAGGTAAA+AGG | - | chr5_1:42320591-42320610 | Msa0731470:CDS | 35.0% | |
| !!! | AGGCCTTAGTTTTTTCAACT+AGG | - | chr5_1:42320623-42320642 | Msa0731470:intron | 35.0% |
| AGGCCTAGTTGAAAAAACTA+AGG | + | chr5_1:42320629-42320648 | None:intergenic | 35.0% | |
| TGCTCATGATTCATGAATAG+GGG | + | chr5_1:42320694-42320713 | None:intergenic | 35.0% | |
| AAAAAGAGGAATTCATGGAG+AGG | - | chr5_1:42320760-42320779 | Msa0731470:intron | 35.0% | |
| ACAATTTCTGATAGGATGCA+AGG | - | chr5_1:42320872-42320891 | Msa0731470:intron | 35.0% | |
| !! | GCCCATAACCATTTGTTATT+TGG | + | chr5_1:42320904-42320923 | None:intergenic | 35.0% |
| GAAAGCTCCACAAATAATGA+AGG | - | chr5_1:42320928-42320947 | Msa0731470:intron | 35.0% | |
| AACGGATGGAGTATAATTGA+TGG | - | chr5_1:42321263-42321282 | Msa0731470:intron | 35.0% | |
| TAACAACTGAGCTAAGTTCA+CGG | - | chr5_1:42321651-42321670 | Msa0731470:intron | 35.0% | |
| TTTGGGAAAAAGGGAATATG+TGG | - | chr5_1:42321711-42321730 | Msa0731470:intron | 35.0% | |
| GAATAAGTGCCTGAGAATAT+AGG | + | chr5_1:42321771-42321790 | None:intergenic | 35.0% | |
| AGGTAATCTTATTGGGACAA+TGG | - | chr5_1:42322206-42322225 | Msa0731470:intron | 35.0% | |
| TAAACTGTAGAGATACCTCT+GGG | + | chr5_1:42322427-42322446 | None:intergenic | 35.0% | |
| TGTACATGTAAACGTTTCAC+GGG | - | chr5_1:42322510-42322529 | Msa0731470:intron | 35.0% | |
| GTTCATATTTCCAGGAACAT+TGG | - | chr5_1:42322533-42322552 | Msa0731470:intron | 35.0% | |
| ! | TTCAAGTTCATAGCTAGGAA+TGG | - | chr5_1:42322580-42322599 | Msa0731470:intron | 35.0% |
| AAATGCAGTTAGAATTCCAG+TGG | - | chr5_1:42322606-42322625 | Msa0731470:intron | 35.0% | |
| AATGCAGTTAGAATTCCAGT+GGG | - | chr5_1:42322607-42322626 | Msa0731470:intron | 35.0% | |
| ! | CACTAGACAATGCATTTTTG+TGG | - | chr5_1:42322689-42322708 | Msa0731470:intron | 35.0% |
| TGCAATTGATATGGTTGTCA+TGG | - | chr5_1:42322914-42322933 | Msa0731470:intron | 35.0% | |
| TGGAACATCTCTATTCTGAA+AGG | + | chr5_1:42323253-42323272 | None:intergenic | 35.0% | |
| TATAGATGTCATGTCAGTGT+TGG | + | chr5_1:42323297-42323316 | None:intergenic | 35.0% | |
| AGTTCAACTGCATAAAGACT+TGG | + | chr5_1:42323526-42323545 | None:intergenic | 35.0% | |
| GCACTCTTCTATTGTATTTG+TGG | - | chr5_1:42323627-42323646 | Msa0731470:intron | 35.0% | |
| GTGGTGTTCTCAAATAGATT+AGG | - | chr5_1:42323646-42323665 | Msa0731470:intron | 35.0% | |
| TTAGTCTCATAGAGAACCTT+AGG | - | chr5_1:42324119-42324138 | Msa0731470:intron | 35.0% | |
| TAGTCTCATAGAGAACCTTA+GGG | - | chr5_1:42324120-42324139 | Msa0731470:intron | 35.0% | |
| TTTATGGGAGAGCAACATTT+GGG | - | chr5_1:42324316-42324335 | Msa0731470:intron | 35.0% | |
| CAACATTTGGGTATGCATAT+TGG | - | chr5_1:42324328-42324347 | Msa0731470:intron | 35.0% | |
| TCAAGAACGTGAACAAACAT+TGG | - | chr5_1:42324355-42324374 | Msa0731470:intron | 35.0% | |
| ACAAACATTGGAGTCTAGAA+TGG | - | chr5_1:42324367-42324386 | Msa0731470:intron | 35.0% | |
| CTAGAATGGATGATGAAGAA+TGG | - | chr5_1:42324381-42324400 | Msa0731470:intron | 35.0% | |
| TTCTTCTCAGTAAATGGGAT+TGG | + | chr5_1:42324538-42324557 | None:intergenic | 35.0% | |
| AAACTAGTTCAAAACACGAC+CGG | - | chr5_1:42324606-42324625 | Msa0731470:exon | 35.0% | |
| CATATATAGGCGATAGGTGA+TGG | + | chr5_1:42318994-42319013 | Msa0731460:CDS | 40.0% | |
| ! | GTTTTGCTTTCTACCACACA+TGG | - | chr5_1:42319138-42319157 | Msa0731470:three_prime_UTR | 40.0% |
| TTGAAAGCAGTTAACCTTGG+TGG | - | chr5_1:42319183-42319202 | Msa0731470:three_prime_UTR | 40.0% | |
| ! | GTTGGTTAGTTACTGAAGGT+TGG | - | chr5_1:42319205-42319224 | Msa0731470:three_prime_UTR | 40.0% |
| TATTTATGTGCAGAGTCTGG+AGG | - | chr5_1:42319457-42319476 | Msa0731470:intron | 40.0% | |
| !! | AAACAATTTGTCGGGTTGGA+TGG | - | chr5_1:42319688-42319707 | Msa0731470:intron | 40.0% |
| ! | TGAAGCTTTGATTCGAACAC+GGG | + | chr5_1:42319791-42319810 | None:intergenic | 40.0% |
| !! | TCACAAGGGTGTTCATGAAT+AGG | - | chr5_1:42319932-42319951 | Msa0731470:CDS | 40.0% |
| !! | CACAAGGGTGTTCATGAATA+GGG | - | chr5_1:42319933-42319952 | Msa0731470:CDS | 40.0% |
| !! | ACAAGGGTGTTCATGAATAG+GGG | - | chr5_1:42319934-42319953 | Msa0731470:CDS | 40.0% |
| ! | AGGCTTTTAGACAGGCTAAT+AGG | - | chr5_1:42320529-42320548 | Msa0731470:CDS | 40.0% |
| !!! | GCTTTATTTTAAGGCTGGTC+TGG | + | chr5_1:42320577-42320596 | None:intergenic | 40.0% |
| ! | CTTGTCCTTTTACCTGTCAA+AGG | + | chr5_1:42320599-42320618 | None:intergenic | 40.0% |
| CTTTGACAGGTAAAAGGACA+AGG | - | chr5_1:42320597-42320616 | Msa0731470:CDS | 40.0% | |
| TAGCCTATTTAAGCAAAGCC+CGG | - | chr5_1:42320648-42320667 | Msa0731470:intron | 40.0% | |
| CATGATTCATGAATAGGGGT+GGG | + | chr5_1:42320690-42320709 | None:intergenic | 40.0% | |
| TCATGATTCATGAATAGGGG+TGG | + | chr5_1:42320691-42320710 | None:intergenic | 40.0% | |
| AATTCATGGAGAGGATTTGC+AGG | - | chr5_1:42320769-42320788 | Msa0731470:intron | 40.0% | |
| !! | TTTTTGGTCAAGTAGCCTAG+TGG | - | chr5_1:42321548-42321567 | Msa0731470:intron | 40.0% |
| AACAACTGAGCTAAGTTCAC+GGG | - | chr5_1:42321652-42321671 | Msa0731470:intron | 40.0% | |
| CTTCACGTTACCAATGACAA+TGG | + | chr5_1:42321996-42322015 | None:intergenic | 40.0% | |
| GTAAGTCAATGGATGATGAC+TGG | + | chr5_1:42322265-42322284 | None:intergenic | 40.0% | |
| !! | GTCATCATCCATTGACTTAC+TGG | - | chr5_1:42322265-42322284 | Msa0731470:intron | 40.0% |
| ! | TTTTCTCCATAGTTTCCCAG+AGG | - | chr5_1:42322409-42322428 | Msa0731470:intron | 40.0% |
| CTAAACTGTAGAGATACCTC+TGG | + | chr5_1:42322428-42322447 | None:intergenic | 40.0% | |
| GTACATGTAAACGTTTCACG+GGG | - | chr5_1:42322511-42322530 | Msa0731470:intron | 40.0% | |
| TAAAACTGCTCCAATGTTCC+TGG | + | chr5_1:42322546-42322565 | None:intergenic | 40.0% | |
| TGCATTGTCTAGTGCTTGTA+AGG | + | chr5_1:42322683-42322702 | None:intergenic | 40.0% | |
| AAGAGACGGTTCACAAGAAT+GGG | - | chr5_1:42323133-42323152 | Msa0731470:intron | 40.0% | |
| !! | TCATTGACTTCCTAACTGCA+AGG | - | chr5_1:42323192-42323211 | Msa0731470:intron | 40.0% |
| AATGTATGCACCTTGCAGTT+AGG | + | chr5_1:42323205-42323224 | None:intergenic | 40.0% | |
| TTAAATGAGCCTCTATCACC+TGG | - | chr5_1:42323547-42323566 | Msa0731470:intron | 40.0% | |
| ! | AAACTTTCTAGTGTTGCACC+AGG | + | chr5_1:42323568-42323587 | None:intergenic | 40.0% |
| GAATTCTTCCCACTAGCTAA+TGG | - | chr5_1:42323685-42323704 | Msa0731470:intron | 40.0% | |
| CATCAATCACTGATCCCATA+AGG | + | chr5_1:42323711-42323730 | None:intergenic | 40.0% | |
| TTTATCCAACATGCACCCTA+AGG | + | chr5_1:42324138-42324157 | None:intergenic | 40.0% | |
| GTTTATGGGAGAGCAACATT+TGG | - | chr5_1:42324315-42324334 | Msa0731470:intron | 40.0% | |
| !! | TCTGGTCTATTTTTCTCTCG+AGG | + | chr5_1:42324693-42324712 | None:intergenic | 40.0% |
| CGAGAGAAAAATAGACCAGA+AGG | - | chr5_1:42324693-42324712 | Msa0731470:five_prime_UTR | 40.0% | |
| CAGTGGCATATATAGGCGAT+AGG | + | chr5_1:42319000-42319019 | None:intergenic | 45.0% | |
| ! | AAGCAGTTAACCTTGGTGGT+TGG | - | chr5_1:42319187-42319206 | Msa0731470:three_prime_UTR | 45.0% |
| CAGTAACTAACCAACCACCA+AGG | + | chr5_1:42319200-42319219 | None:intergenic | 45.0% | |
| ! | GGTGGTTGGTTAGTTACTGA+AGG | - | chr5_1:42319201-42319220 | Msa0731470:three_prime_UTR | 45.0% |
| GGAATGGCATCAAAGAGAGA+AGG | + | chr5_1:42319237-42319256 | None:intergenic | 45.0% | |
| TCATGAATAGGGGTGGGAAT+AGG | - | chr5_1:42319944-42319963 | Msa0731470:CDS | 45.0% | |
| TTTAGACAGGCTAATAGGCC+TGG | - | chr5_1:42320534-42320553 | Msa0731470:CDS | 45.0% | |
| CAGGTAAAAGGACAAGGCTT+AGG | - | chr5_1:42320603-42320622 | Msa0731470:CDS | 45.0% | |
| GGGCTTTGCTTAAATAGGCT+AGG | + | chr5_1:42320649-42320668 | None:intergenic | 45.0% | |
| TTTGCAGGCAAAGACAGAAG+AGG | - | chr5_1:42320784-42320803 | Msa0731470:intron | 45.0% | |
| GTTGACCAGTGATACATCAG+CGG | + | chr5_1:42320816-42320835 | None:intergenic | 45.0% | |
| GCTGATGTATCACTGGTCAA+CGG | - | chr5_1:42320815-42320834 | Msa0731470:intron | 45.0% | |
| ATGTATCACTGGTCAACGGA+TGG | - | chr5_1:42320819-42320838 | Msa0731470:intron | 45.0% | |
| AGTAGCCTAGTGGTTAAAGC+TGG | - | chr5_1:42321558-42321577 | Msa0731470:intron | 45.0% | |
| ! | ACACACCAGCTTTAACCACT+AGG | + | chr5_1:42321566-42321585 | None:intergenic | 45.0% |
| TAGTGGTTAAAGCTGGTGTG+TGG | - | chr5_1:42321565-42321584 | Msa0731470:intron | 45.0% | |
| AGTGGTTAAAGCTGGTGTGT+GGG | - | chr5_1:42321566-42321585 | Msa0731470:intron | 45.0% | |
| ! | GAGATACCTCTGGGAAACTA+TGG | + | chr5_1:42322418-42322437 | None:intergenic | 45.0% |
| TTCACGGGGTTCATATTTCC+AGG | - | chr5_1:42322525-42322544 | Msa0731470:intron | 45.0% | |
| CAGTTAGAATTCCAGTGGGT+TGG | - | chr5_1:42322611-42322630 | Msa0731470:intron | 45.0% | |
| !! | TTAGAATTCCAGTGGGTTGG+TGG | - | chr5_1:42322614-42322633 | Msa0731470:intron | 45.0% |
| ATTGATCTTCATGCAGCACC+TGG | - | chr5_1:42323080-42323099 | Msa0731470:intron | 45.0% | |
| !! | TCATAGCCATTTTGAGAGCC+AGG | + | chr5_1:42323101-42323120 | None:intergenic | 45.0% |
| GAGCATAGCTCTTCAAGAGA+CGG | - | chr5_1:42323119-42323138 | Msa0731470:intron | 45.0% | |
| CAAGAGACGGTTCACAAGAA+TGG | - | chr5_1:42323132-42323151 | Msa0731470:intron | 45.0% | |
| AGAGACGGTTCACAAGAATG+GGG | - | chr5_1:42323134-42323153 | Msa0731470:intron | 45.0% | |
| GAAGAATTCTCTAGGCATGG+AGG | + | chr5_1:42323674-42323693 | None:intergenic | 45.0% | |
| TGGGAAGAATTCTCTAGGCA+TGG | + | chr5_1:42323677-42323696 | None:intergenic | 45.0% | |
| GCTAGTGGGAAGAATTCTCT+AGG | + | chr5_1:42323682-42323701 | None:intergenic | 45.0% | |
| CCATAAGGCCATTAGCTAGT+GGG | + | chr5_1:42323696-42323715 | None:intergenic | 45.0% | |
| !! | CCACTAGCTAATGGCCTTAT+GGG | - | chr5_1:42323694-42323713 | Msa0731470:intron | 45.0% |
| GTCCACTACTACAGCATCTT+TGG | - | chr5_1:42323730-42323749 | Msa0731470:intron | 45.0% | |
| CTCCAAAGATGCTGTAGTAG+TGG | + | chr5_1:42323735-42323754 | None:intergenic | 45.0% | |
| GTTGCTGAGTGGCAAGTTAA+AGG | - | chr5_1:42324246-42324265 | Msa0731470:CDS | 45.0% | |
| CTACAAGATGGTAGTCCTTC+TGG | + | chr5_1:42324711-42324730 | None:intergenic | 45.0% | |
| !!! | TTTTTCTATATATTTTTAAT+AGG | - | chr5_1:42319393-42319412 | Msa0731470:CDS | 5.0% |
| !! | TTATATATTTAATAATAACA+TGG | + | chr5_1:42323463-42323482 | None:intergenic | 5.0% |
| !! | CTGATTTGGTCTCCCATGTG+TGG | + | chr5_1:42319154-42319173 | None:intergenic | 50.0% |
| TTATGTGCAGAGTCTGGAGG+AGG | - | chr5_1:42319460-42319479 | Msa0731470:intron | 50.0% | |
| CACTTGAGCGGTTTGCAACA+AGG | + | chr5_1:42319492-42319511 | None:intergenic | 50.0% | |
| ! | AGCTTTGATTCGAACACGGG+TGG | + | chr5_1:42319788-42319807 | None:intergenic | 50.0% |
| ! | AGGGTGTTCATGAATAGGGG+TGG | - | chr5_1:42319937-42319956 | Msa0731470:CDS | 50.0% |
| GGGTGTTCATGAATAGGGGT+GGG | - | chr5_1:42319938-42319957 | Msa0731470:CDS | 50.0% | |
| ! | CTTTTAGTAGGCCGAGCCAT+AGG | + | chr5_1:42319989-42320008 | None:intergenic | 50.0% |
| GTCTATCAAGCCTATCAGGC+CGG | - | chr5_1:42320104-42320123 | Msa0731470:CDS | 50.0% | |
| GAGCCGGGCTTTGCTTAAAT+AGG | + | chr5_1:42320654-42320673 | None:intergenic | 50.0% | |
| GTCTCCTCATTCACACGTGA+TGG | - | chr5_1:42322160-42322179 | Msa0731470:intron | 50.0% | |
| TCCTCATTCACACGTGATGG+TGG | - | chr5_1:42322163-42322182 | Msa0731470:intron | 50.0% | |
| ACCACCATCACGTGTGAATG+AGG | + | chr5_1:42322167-42322186 | None:intergenic | 50.0% | |
| CTACTGATCCAACTCCACCA+TGG | - | chr5_1:42322641-42322660 | Msa0731470:intron | 50.0% | |
| TGTAAGGAACCTCCCACGTA+GGG | + | chr5_1:42322667-42322686 | None:intergenic | 50.0% | |
| TTGTAAGGAACCTCCCACGT+AGG | + | chr5_1:42322668-42322687 | None:intergenic | 50.0% | |
| TGGTTGTCATGGCGCTAATG+TGG | - | chr5_1:42322925-42322944 | Msa0731470:intron | 50.0% | |
| GTCGATATCAGTGTCGTGTC+CGG | - | chr5_1:42323362-42323381 | Msa0731470:intron | 50.0% | |
| ACGGACACAGACATAGACAC+CGG | + | chr5_1:42323384-42323403 | None:intergenic | 50.0% | |
| AGTGTTGCACCAGGTGATAG+AGG | + | chr5_1:42323559-42323578 | None:intergenic | 50.0% | |
| ! | CCCACTAGCTAATGGCCTTA+TGG | - | chr5_1:42323693-42323712 | Msa0731470:intron | 50.0% |
| CCCATAAGGCCATTAGCTAG+TGG | + | chr5_1:42323697-42323716 | None:intergenic | 50.0% | |
| GAGAACCTTAGGGTGCATGT+TGG | - | chr5_1:42324130-42324149 | Msa0731470:intron | 50.0% | |
| !! | AAGGTGAATGGGTTGCTGAG+TGG | - | chr5_1:42324235-42324254 | Msa0731470:CDS | 50.0% |
| GCAAACCGCTCAAGTGCTTC+TGG | - | chr5_1:42319496-42319515 | Msa0731470:intron | 55.0% | |
| ACCGCTCAAGTGCTTCTGGT+TGG | - | chr5_1:42319500-42319519 | Msa0731470:intron | 55.0% | |
| !! | CCCAACCAGAAGCACTTGAG+CGG | + | chr5_1:42319504-42319523 | None:intergenic | 55.0% |
| ! | CCGCTCAAGTGCTTCTGGTT+GGG | - | chr5_1:42319501-42319520 | Msa0731470:intron | 55.0% |
| GGCTCGGCCTACTAAAAGCT+CGG | - | chr5_1:42319991-42320010 | Msa0731470:CDS | 55.0% | |
| GGCCTACTAAAAGCTCGGCT+CGG | - | chr5_1:42319996-42320015 | Msa0731470:CDS | 55.0% | |
| CGTATACGATCCGGCCTGAT+AGG | + | chr5_1:42320117-42320136 | None:intergenic | 55.0% | |
| AATAGGGGTGGGAATGAGCC+GGG | + | chr5_1:42320679-42320698 | None:intergenic | 55.0% | |
| GAATAGGGGTGGGAATGAGC+CGG | + | chr5_1:42320680-42320699 | None:intergenic | 55.0% | |
| GCAGGCAAAGACAGAAGAGG+TGG | - | chr5_1:42320787-42320806 | Msa0731470:intron | 55.0% | |
| GGTGACCGCTGATGTATCAC+TGG | - | chr5_1:42320808-42320827 | Msa0731470:intron | 55.0% | |
| GTAGCTATCCACCAACCCAC+TGG | + | chr5_1:42322625-42322644 | None:intergenic | 55.0% | |
| ! | GCAGCACCTGGCTCTCAAAA+TGG | - | chr5_1:42323092-42323111 | Msa0731470:intron | 55.0% |
| TTCCAGTGTCAGACACGCGT+CGG | - | chr5_1:42323268-42323287 | Msa0731470:intron | 55.0% | |
| CTGATATCGACACGCCGACA+CGG | + | chr5_1:42323353-42323372 | None:intergenic | 55.0% | |
| AATAGGCCAGACCGCTCGTC+AGG | - | chr5_1:42319961-42319980 | Msa0731470:CDS | 60.0% | |
| ATAGGCCAGACCGCTCGTCA+GGG | - | chr5_1:42319962-42319981 | Msa0731470:CDS | 60.0% | |
| ! | GGCCGAGCCGAGCTTTTAGT+AGG | + | chr5_1:42320001-42320020 | None:intergenic | 60.0% |
| AAGCAAAGCCCGGCTCAACC+CGG | - | chr5_1:42320658-42320677 | Msa0731470:intron | 60.0% | |
| ! | ACGTAGGGCCATGGTGGAGT+TGG | + | chr5_1:42322652-42322671 | None:intergenic | 60.0% |
| AACTCCACCATGGCCCTACG+TGG | - | chr5_1:42322651-42322670 | Msa0731470:intron | 60.0% | |
| ACTCCACCATGGCCCTACGT+GGG | - | chr5_1:42322652-42322671 | Msa0731470:intron | 60.0% | |
| TAGGCCAGACCGCTCGTCAG+GGG | - | chr5_1:42319963-42319982 | Msa0731470:CDS | 65.0% | |
| AGCCATAGGCCCCTGACGAG+CGG | + | chr5_1:42319975-42319994 | None:intergenic | 65.0% | |
| CTCGTCAGGGGCCTATGGCT+CGG | - | chr5_1:42319975-42319994 | Msa0731470:CDS | 65.0% | |
| ! | GGAATGAGCCGGGTTGAGCC+GGG | + | chr5_1:42320669-42320688 | None:intergenic | 65.0% |
| ! | GGGAATGAGCCGGGTTGAGC+CGG | + | chr5_1:42320670-42320689 | None:intergenic | 65.0% |
| GAACCTCCCACGTAGGGCCA+TGG | + | chr5_1:42322661-42322680 | None:intergenic | 65.0% | |
| CACCGACGCGTGTCTGACAC+TGG | + | chr5_1:42323273-42323292 | None:intergenic | 65.0% | |
| TAGGCCCCTGACGAGCGGTC+TGG | + | chr5_1:42319970-42319989 | None:intergenic | 70.0% | |
| GACCGCTCGTCAGGGGCCTA+TGG | - | chr5_1:42319970-42319989 | Msa0731470:CDS | 70.0% | |
| CCTCCCACGTAGGGCCATGG+TGG | + | chr5_1:42322658-42322677 | None:intergenic | 70.0% | |
| CCACCATGGCCCTACGTGGG+AGG | - | chr5_1:42322655-42322674 | Msa0731470:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 42318953 | 42324734 | 42318953 | ID=Msa0731470;Name=Msa0731470 |
| chr5_1 | mRNA | 42318953 | 42324734 | 42318953 | ID=Msa0731470-mRNA-1;Parent=Msa0731470;Name=Msa0731470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=125|1|1|1|1|1|8|315|506 |
| chr5_1 | exon | 42318953 | 42319449 | 42318953 | ID=Msa0731470-mRNA-1:exon:12242;Parent=Msa0731470-mRNA-1 |
| chr5_1 | exon | 42319825 | 42320177 | 42319825 | ID=Msa0731470-mRNA-1:exon:12241;Parent=Msa0731470-mRNA-1 |
| chr5_1 | exon | 42320474 | 42320629 | 42320474 | ID=Msa0731470-mRNA-1:exon:12240;Parent=Msa0731470-mRNA-1 |
| chr5_1 | exon | 42320971 | 42321140 | 42320971 | ID=Msa0731470-mRNA-1:exon:12239;Parent=Msa0731470-mRNA-1 |
| chr5_1 | exon | 42322738 | 42322896 | 42322738 | ID=Msa0731470-mRNA-1:exon:12238;Parent=Msa0731470-mRNA-1 |
| chr5_1 | exon | 42323859 | 42324044 | 42323859 | ID=Msa0731470-mRNA-1:exon:12237;Parent=Msa0731470-mRNA-1 |
| chr5_1 | exon | 42324153 | 42324272 | 42324153 | ID=Msa0731470-mRNA-1:exon:12236;Parent=Msa0731470-mRNA-1 |
| chr5_1 | exon | 42324415 | 42324734 | 42324415 | ID=Msa0731470-mRNA-1:exon:12235;Parent=Msa0731470-mRNA-1 |
| chr5_1 | five_prime_UTR | 42324610 | 42324734 | 42324610 | ID=Msa0731470-mRNA-1:five_prime_utr;Parent=Msa0731470-mRNA-1 |
| chr5_1 | CDS | 42324415 | 42324609 | 42324415 | ID=Msa0731470-mRNA-1:cds;Parent=Msa0731470-mRNA-1 |
| chr5_1 | CDS | 42324153 | 42324272 | 42324153 | ID=Msa0731470-mRNA-1:cds;Parent=Msa0731470-mRNA-1 |
| chr5_1 | CDS | 42323859 | 42324044 | 42323859 | ID=Msa0731470-mRNA-1:cds;Parent=Msa0731470-mRNA-1 |
| chr5_1 | CDS | 42322738 | 42322896 | 42322738 | ID=Msa0731470-mRNA-1:cds;Parent=Msa0731470-mRNA-1 |
| chr5_1 | CDS | 42320971 | 42321140 | 42320971 | ID=Msa0731470-mRNA-1:cds;Parent=Msa0731470-mRNA-1 |
| chr5_1 | CDS | 42320474 | 42320629 | 42320474 | ID=Msa0731470-mRNA-1:cds;Parent=Msa0731470-mRNA-1 |
| chr5_1 | CDS | 42319825 | 42320177 | 42319825 | ID=Msa0731470-mRNA-1:cds;Parent=Msa0731470-mRNA-1 |
| chr5_1 | CDS | 42319268 | 42319449 | 42319268 | ID=Msa0731470-mRNA-1:cds;Parent=Msa0731470-mRNA-1 |
| chr5_1 | three_prime_UTR | 42318953 | 42319267 | 42318953 | ID=Msa0731470-mRNA-1:three_prime_utr;Parent=Msa0731470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
