Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850750 | XP_039686738.1 | 76.126 | 222 | 49 | 3 | 11 | 228 | 52 | 273 | 2.48e-103 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850750 | A0A072VCV9 | 76.126 | 222 | 49 | 3 | 11 | 228 | 52 | 273 | 1.51e-103 | 328 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719080 | Msa0850750 | 0.808406 | 3.145491e-50 | -8.615850e-47 |
| Msa0719090 | Msa0850750 | 0.813831 | 2.097631e-51 | -8.615850e-47 |
| Msa0719390 | Msa0850750 | 0.810964 | 8.868745e-51 | -8.615850e-47 |
| Msa0789640 | Msa0850750 | 0.807673 | 4.507166e-50 | -8.615850e-47 |
| Msa0850750 | Msa0850760 | 0.875329 | 3.357990e-68 | -8.615850e-47 |
| Msa0850750 | Msa1305900 | 0.808123 | 3.615023e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850750 | MtrunA17_Chr2g0325661 | 76.126 | 222 | 49 | 3 | 11 | 228 | 52 | 273 | 2.90e-107 | 328 |
| Msa0850750 | MtrunA17_Chr6g0471251 | 65.401 | 237 | 64 | 3 | 7 | 228 | 50 | 283 | 1.19e-88 | 277 |
| Msa0850750 | MtrunA17_Chr2g0325761 | 64.253 | 221 | 70 | 5 | 11 | 227 | 52 | 267 | 2.60e-73 | 235 |
| Msa0850750 | MtrunA17_Chr5g0434741 | 53.623 | 207 | 82 | 3 | 24 | 228 | 32 | 226 | 1.04e-57 | 185 |
| Msa0850750 | MtrunA17_Chr2g0325261 | 53.846 | 208 | 81 | 4 | 24 | 228 | 31 | 226 | 2.88e-55 | 179 |
| Msa0850750 | MtrunA17_Chr2g0325341 | 53.846 | 208 | 81 | 4 | 24 | 228 | 31 | 226 | 2.88e-55 | 179 |
| Msa0850750 | MtrunA17_Chr2g0325651 | 50.000 | 208 | 89 | 4 | 24 | 228 | 45 | 240 | 2.67e-49 | 166 |
| Msa0850750 | MtrunA17_Chr2g0325321 | 43.011 | 279 | 92 | 6 | 9 | 238 | 8 | 268 | 2.25e-48 | 169 |
| Msa0850750 | MtrunA17_Chr2g0325281 | 43.011 | 279 | 92 | 6 | 9 | 238 | 8 | 268 | 2.27e-48 | 167 |
| Msa0850750 | MtrunA17_Chr2g0325861 | 42.705 | 281 | 86 | 6 | 12 | 230 | 34 | 301 | 3.18e-47 | 167 |
| Msa0850750 | MtrunA17_Chr2g0325811 | 45.725 | 269 | 93 | 7 | 13 | 228 | 45 | 313 | 3.78e-46 | 164 |
| Msa0850750 | MtrunA17_Chr2g0325351 | 45.600 | 250 | 95 | 7 | 12 | 228 | 16 | 257 | 3.28e-45 | 160 |
| Msa0850750 | MtrunA17_Chr2g0325221 | 45.185 | 270 | 94 | 8 | 12 | 228 | 49 | 317 | 3.79e-45 | 160 |
| Msa0850750 | MtrunA17_Chr2g0325741 | 45.249 | 221 | 99 | 6 | 12 | 210 | 49 | 269 | 3.22e-39 | 137 |
| Msa0850750 | MtrunA17_Chr2g0325721 | 48.241 | 199 | 75 | 6 | 14 | 202 | 33 | 213 | 3.31e-39 | 141 |
| Msa0850750 | MtrunA17_Chr2g0325711 | 40.441 | 272 | 111 | 7 | 14 | 238 | 26 | 293 | 6.80e-38 | 140 |
| Msa0850750 | MtrunA17_Chr2g0333341 | 38.328 | 287 | 100 | 6 | 15 | 228 | 54 | 336 | 8.76e-38 | 139 |
| Msa0850750 | MtrunA17_Chr2g0325621 | 40.672 | 268 | 86 | 7 | 9 | 228 | 11 | 253 | 1.64e-35 | 133 |
| Msa0850750 | MtrunA17_Chr5g0416271 | 45.161 | 217 | 83 | 7 | 30 | 238 | 13 | 201 | 1.89e-34 | 128 |
| Msa0850750 | MtrunA17_Chr2g0325781 | 43.716 | 183 | 85 | 5 | 46 | 219 | 63 | 236 | 1.63e-30 | 115 |
| Msa0850750 | MtrunA17_Chr2g0325361 | 36.332 | 289 | 107 | 6 | 9 | 238 | 8 | 278 | 3.10e-29 | 115 |
| Msa0850750 | MtrunA17_Chr2g0325701 | 38.819 | 237 | 106 | 7 | 12 | 228 | 48 | 265 | 5.92e-24 | 99.8 |
| Msa0850750 | MtrunA17_Chr2g0325691 | 42.157 | 204 | 77 | 8 | 14 | 202 | 51 | 228 | 2.07e-22 | 95.5 |
| Msa0850750 | MtrunA17_Chr2g0325801 | 58.442 | 77 | 32 | 0 | 78 | 154 | 50 | 126 | 4.69e-22 | 88.2 |
| Msa0850750 | MtrunA17_Chr2g0325231 | 40.394 | 203 | 106 | 6 | 38 | 228 | 53 | 252 | 1.43e-20 | 90.1 |
| Msa0850750 | MtrunA17_Chr7g0235901 | 39.080 | 174 | 84 | 6 | 64 | 228 | 3 | 163 | 2.75e-18 | 82.0 |
| Msa0850750 | MtrunA17_Chr2g0280141 | 32.463 | 268 | 92 | 8 | 14 | 228 | 25 | 256 | 1.73e-16 | 78.2 |
| Msa0850750 | MtrunA17_Chr2g0332961 | 41.406 | 128 | 61 | 3 | 45 | 171 | 3 | 117 | 1.93e-14 | 71.6 |
| Msa0850750 | MtrunA17_Chr4g0044221 | 32.099 | 162 | 61 | 2 | 116 | 228 | 12 | 173 | 6.11e-12 | 64.3 |
| Msa0850750 | MtrunA17_Chr3g0140581 | 31.613 | 155 | 61 | 2 | 95 | 204 | 1 | 155 | 1.05e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCGATATCTCTCTTTA+TGG | 0.128739 | 5_4:+40474920 | None:intergenic |
| GCATACTGTTATGAAATTAA+AGG | 0.143662 | 5_4:-40475117 | Msa0850750:CDS |
| AAAAGTTGCGGAATTTAATA+TGG | 0.247412 | 5_4:-40474775 | Msa0850750:CDS |
| TCTGAATAAAGAAGTTAAAT+TGG | 0.283116 | 5_4:-40475003 | Msa0850750:CDS |
| TTACTACTCTGCCAGTTAAT+AGG | 0.294223 | 5_4:-40475163 | Msa0850750:CDS |
| CGTTGTTGAAGATAATTAAA+AGG | 0.322239 | 5_4:-40475058 | Msa0850750:CDS |
| GCCTTCTTGATATTAGCTTT+AGG | 0.350170 | 5_4:+40474664 | None:intergenic |
| CTTTAGGAACTTCTTCCTTT+CGG | 0.361119 | 5_4:+40474680 | None:intergenic |
| ACTATCACATGTTCCCAAAC+TGG | 0.392575 | 5_4:+40475223 | None:intergenic |
| TTATCAAATAACCTATTAAC+TGG | 0.407700 | 5_4:+40475152 | None:intergenic |
| ATCCAATCAACGCATTCATT+AGG | 0.413655 | 5_4:-40470715 | None:intergenic |
| AACCTAATGAATGCGTTGAT+TGG | 0.443296 | 5_4:+40470713 | None:intergenic |
| CATGTTCCCAAACTGGAAAT+CGG | 0.445311 | 5_4:+40475230 | None:intergenic |
| TGAAATTCACAACAAAATGC+TGG | 0.455042 | 5_4:-40474841 | Msa0850750:CDS |
| TTGAAGATAATTAAAAGGTC+GGG | 0.456726 | 5_4:-40475053 | Msa0850750:CDS |
| GGTTCTAGTGACTCTGACTC+TGG | 0.479567 | 5_4:-40475291 | Msa0850750:CDS |
| TTAAGAAATGCAAAAGGAAG+AGG | 0.486004 | 5_4:-40474968 | Msa0850750:CDS |
| GAATGATCGTGCTCAATTGA+AGG | 0.495355 | 5_4:-40474640 | Msa0850750:CDS |
| GCAATGAAAATGTTAATTAG+TGG | 0.504622 | 5_4:-40474723 | Msa0850750:CDS |
| GTTGAAGATAATTAAAAGGT+CGG | 0.507217 | 5_4:-40475054 | Msa0850750:CDS |
| AGAGAGATATCGAAGAGTGC+TGG | 0.514393 | 5_4:-40474914 | Msa0850750:CDS |
| GAAGAGTGCTGGAAAGAGCT+TGG | 0.524271 | 5_4:-40474903 | Msa0850750:CDS |
| AATTGTTTAAGAAATGCAAA+AGG | 0.532167 | 5_4:-40474974 | Msa0850750:CDS |
| GAAATTCACAACAAAATGCT+GGG | 0.540686 | 5_4:-40474840 | Msa0850750:CDS |
| CGGAAATATTAGAGTCCGAA+AGG | 0.563570 | 5_4:-40474695 | Msa0850750:CDS |
| TGCATCAAGCTCTTTCTCTG+TGG | 0.581993 | 5_4:+40474743 | None:intergenic |
| TCCTAAAGCTAATATCAAGA+AGG | 0.585858 | 5_4:-40474665 | Msa0850750:CDS |
| CTGGAAATCGGAGAAAACCT+TGG | 0.586701 | 5_4:+40475242 | None:intergenic |
| AAGGAAGGAAAAGGAACTGA+AGG | 0.588306 | 5_4:-40474808 | Msa0850750:CDS |
| ATGATGTTCCTTTGTCACCA+AGG | 0.589789 | 5_4:-40475259 | Msa0850750:CDS |
| TTTAACTTCTTTATTCAGAG+AGG | 0.596717 | 5_4:+40475007 | None:intergenic |
| AATGTTAATTAGTGGACAAG+CGG | 0.601547 | 5_4:-40474715 | Msa0850750:CDS |
| TGATGTGTCTGTTAAGAAGA+GGG | 0.615157 | 5_4:-40475195 | Msa0850750:CDS |
| GGAGAAAACCTTGGTGACAA+AGG | 0.619506 | 5_4:+40475251 | None:intergenic |
| TGCGTTGATTGGATCTAACA+TGG | 0.648793 | 5_4:+40470724 | None:intergenic |
| GTGATGTGTCTGTTAAGAAG+AGG | 0.686978 | 5_4:-40475196 | Msa0850750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATACAAAAATTTGTTA+AGG | - | chr5_4:40472447-40472466 | Msa0850750:intron | 10.0% |
| !! | AAAAAAAAAAAGTAATTTCT+TGG | - | chr5_4:40472962-40472981 | Msa0850750:intron | 10.0% |
| !!! | TGAACATATATTTTTTCTTA+TGG | - | chr5_4:40472317-40472336 | Msa0850750:intron | 15.0% |
| !! | GAAAATAATAAGAGTTTAAA+CGG | + | chr5_4:40472405-40472424 | None:intergenic | 15.0% |
| !!! | CGTTTTAATAAAATTTGTTA+AGG | - | chr5_4:40472497-40472516 | Msa0850750:intron | 15.0% |
| !! | AAAATTGTTCTCTATAATAA+TGG | - | chr5_4:40472737-40472756 | Msa0850750:intron | 15.0% |
| !!! | ATTCATTATTTTTCCATAAT+AGG | - | chr5_4:40473210-40473229 | Msa0850750:intron | 15.0% |
| !! | ATTTAATGAAAGTTCTTTAT+GGG | - | chr5_4:40473956-40473975 | Msa0850750:intron | 15.0% |
| !! | TTATAATAATGGTATAAAAG+TGG | + | chr5_4:40474161-40474180 | None:intergenic | 15.0% |
| !! | AGACGTAATATTTATAATAA+TGG | + | chr5_4:40474172-40474191 | None:intergenic | 15.0% |
| !! | TTATCAAATAACCTATTAAC+TGG | + | chr5_4:40470860-40470879 | None:intergenic | 20.0% |
| !!! | CTTTTAATTATCTTCAACAA+CGG | + | chr5_4:40470953-40470972 | None:intergenic | 20.0% |
| !! | TCTGAATAAAGAAGTTAAAT+TGG | - | chr5_4:40471006-40471025 | Msa0850750:intron | 20.0% |
| !! | AATTGTTTAAGAAATGCAAA+AGG | - | chr5_4:40471035-40471054 | Msa0850750:intron | 20.0% |
| !! | AAAATACAAAGTTTCTTGTT+TGG | - | chr5_4:40471499-40471518 | Msa0850750:intron | 20.0% |
| !! | AATAGGATTGTTAATAAAAC+CGG | + | chr5_4:40472040-40472059 | None:intergenic | 20.0% |
| !! | GTATAATAATGATATGTTGT+TGG | + | chr5_4:40472435-40472454 | None:intergenic | 20.0% |
| !! | CATTAAAACGACATTTAAAA+AGG | + | chr5_4:40472538-40472557 | None:intergenic | 20.0% |
| !!! | TTTTAAATGTCGTTTTAATG+TGG | - | chr5_4:40472538-40472557 | Msa0850750:intron | 20.0% |
| !!! | TCAAAAATTTTAAGTGCAAA+AGG | - | chr5_4:40472805-40472824 | Msa0850750:intron | 20.0% |
| !! | GCAAAAAAATAGGAATATAT+TGG | - | chr5_4:40473063-40473082 | Msa0850750:intron | 20.0% |
| !! | AAAAAATAGGAATATATTGG+TGG | - | chr5_4:40473066-40473085 | Msa0850750:intron | 20.0% |
| !!! | TTTTAAAACGACACTTAAAA+AGG | - | chr5_4:40473166-40473185 | Msa0850750:intron | 20.0% |
| !!! | TATTTTTCCATAATAGGTTA+AGG | - | chr5_4:40473216-40473235 | Msa0850750:intron | 20.0% |
| !!! | ATTTTTCCATAATAGGTTAA+GGG | - | chr5_4:40473217-40473236 | Msa0850750:intron | 20.0% |
| !! | AACATATGCTAATAGAATAA+TGG | + | chr5_4:40473358-40473377 | None:intergenic | 20.0% |
| !!! | AACATTATTGAGGTTTTATT+TGG | + | chr5_4:40473408-40473427 | None:intergenic | 20.0% |
| !! | GATTTAATGAAAGTTCTTTA+TGG | - | chr5_4:40473955-40473974 | Msa0850750:intron | 20.0% |
| !!! | TAAGAATTGATTTGTTTGTT+GGG | + | chr5_4:40474239-40474258 | None:intergenic | 20.0% |
| !!! | ATAAGAATTGATTTGTTTGT+TGG | + | chr5_4:40474240-40474259 | None:intergenic | 20.0% |
| !! | TTGAAAACTTAATTGAACTT+CGG | - | chr5_4:40474279-40474298 | Msa0850750:intron | 20.0% |
| !! | GAATAATAATATCCAATGAA+AGG | + | chr5_4:40474909-40474928 | None:intergenic | 20.0% |
| !! | AAAATATTCTATGAAATGCA+AGG | - | chr5_4:40474956-40474975 | Msa0850750:CDS | 20.0% |
| !!! | GCATAAATTTGTTTTTCTTT+TGG | - | chr5_4:40475076-40475095 | Msa0850750:CDS | 20.0% |
| ! | GCATACTGTTATGAAATTAA+AGG | - | chr5_4:40470892-40470911 | Msa0850750:intron | 25.0% |
| !! | TTTTCATCGTGATCATAATA+TGG | + | chr5_4:40470923-40470942 | None:intergenic | 25.0% |
| ! | CGTTGTTGAAGATAATTAAA+AGG | - | chr5_4:40470951-40470970 | Msa0850750:intron | 25.0% |
| ! | GTTGAAGATAATTAAAAGGT+CGG | - | chr5_4:40470955-40470974 | Msa0850750:intron | 25.0% |
| ! | TTGAAGATAATTAAAAGGTC+GGG | - | chr5_4:40470956-40470975 | Msa0850750:intron | 25.0% |
| !! | TTTAACTTCTTTATTCAGAG+AGG | + | chr5_4:40471005-40471024 | None:intergenic | 25.0% |
| ! | AAAAATTGAAAGGAAGGAAA+AGG | - | chr5_4:40471192-40471211 | Msa0850750:intron | 25.0% |
| !! | TATTAAATTCCGCAACTTTT+TGG | + | chr5_4:40471234-40471253 | None:intergenic | 25.0% |
| ! | AAAAGTTGCGGAATTTAATA+TGG | - | chr5_4:40471234-40471253 | Msa0850750:intron | 25.0% |
| ! | GCAATGAAAATGTTAATTAG+TGG | - | chr5_4:40471286-40471305 | Msa0850750:intron | 25.0% |
| ! | TTAATGAAGAAGCAATTTGA+TGG | - | chr5_4:40471400-40471419 | Msa0850750:intron | 25.0% |
| !! | CAAGAAACTTTGTATTTTTC+CGG | + | chr5_4:40471497-40471516 | None:intergenic | 25.0% |
| !!! | AATCTAATATGTTTTTCAGC+AGG | - | chr5_4:40471748-40471767 | Msa0850750:intron | 25.0% |
| ! | TGTTTAGACACATCATATTA+CGG | + | chr5_4:40471795-40471814 | None:intergenic | 25.0% |
| ! | TAATCACTTTGTACGTTAAA+AGG | - | chr5_4:40472148-40472167 | Msa0850750:intron | 25.0% |
| ! | AAAACGACATTTAAAAAGAG+CGG | + | chr5_4:40472483-40472502 | None:intergenic | 25.0% |
| !!! | ACTGTCGTTTTAGTATTTTA+AGG | - | chr5_4:40472579-40472598 | Msa0850750:intron | 25.0% |
| !!! | CTGTCGTTTTAGTATTTTAA+GGG | - | chr5_4:40472580-40472599 | Msa0850750:intron | 25.0% |
| ! | AGATAAGAGTTATTGACAAA+GGG | + | chr5_4:40472624-40472643 | None:intergenic | 25.0% |
| ! | AAGATAAGAGTTATTGACAA+AGG | + | chr5_4:40472625-40472644 | None:intergenic | 25.0% |
| !!! | TATATTGGTGGATTAAAATG+AGG | - | chr5_4:40473078-40473097 | Msa0850750:intron | 25.0% |
| !!! | ATATTGGTGGATTAAAATGA+GGG | - | chr5_4:40473079-40473098 | Msa0850750:intron | 25.0% |
| !! | TTTTTCCATAATAGGTTAAG+GGG | - | chr5_4:40473218-40473237 | Msa0850750:intron | 25.0% |
| ! | TATTAGCATATGTTCCATTT+AGG | - | chr5_4:40473364-40473383 | Msa0850750:intron | 25.0% |
| !! | ATATTTTCGTTTGACCTAAA+TGG | + | chr5_4:40473381-40473400 | None:intergenic | 25.0% |
| ! | CAGTATATTAGTATATCATC+TGG | + | chr5_4:40473465-40473484 | None:intergenic | 25.0% |
| !! | TGACATACTTTTCTATGATT+TGG | - | chr5_4:40473930-40473949 | Msa0850750:intron | 25.0% |
| ! | AATAATGGTATAAAAGTGGA+TGG | + | chr5_4:40474157-40474176 | None:intergenic | 25.0% |
| !! | TAATTGAACTTCGGATATTT+TGG | - | chr5_4:40474288-40474307 | Msa0850750:intron | 25.0% |
| ! | TTTCAATAAAAGCTTACATG+CGG | + | chr5_4:40474756-40474775 | None:intergenic | 25.0% |
| !!! | ATTGATGGATTGAACAATAT+AGG | - | chr5_4:40474812-40474831 | Msa0850750:CDS | 25.0% |
| !!! | TCCTTTTGATTTTCTGAATA+AGG | + | chr5_4:40475155-40475174 | None:intergenic | 25.0% |
| ! | AGGAAAGATACAATCATAAT+AGG | - | chr5_4:40475171-40475190 | Msa0850750:CDS | 25.0% |
| !! | AATCATAATAGGTTCTAACA+TGG | - | chr5_4:40475182-40475201 | Msa0850750:CDS | 25.0% |
| TTAAGAAATGCAAAAGGAAG+AGG | - | chr5_4:40471041-40471060 | Msa0850750:intron | 30.0% | |
| TGAAATTCACAACAAAATGC+TGG | - | chr5_4:40471168-40471187 | Msa0850750:intron | 30.0% | |
| GAAATTCACAACAAAATGCT+GGG | - | chr5_4:40471169-40471188 | Msa0850750:intron | 30.0% | |
| AAATGCTGGGAAAAATTGAA+AGG | - | chr5_4:40471182-40471201 | Msa0850750:intron | 30.0% | |
| ! | AATGTTAATTAGTGGACAAG+CGG | - | chr5_4:40471294-40471313 | Msa0850750:intron | 30.0% |
| TCCTAAAGCTAATATCAAGA+AGG | - | chr5_4:40471344-40471363 | Msa0850750:intron | 30.0% | |
| ! | AAACTTTGTATTTTTCCGGA+AGG | + | chr5_4:40471493-40471512 | None:intergenic | 30.0% |
| ! | GTAGCTACTCTTTTGATATT+TGG | - | chr5_4:40471643-40471662 | Msa0850750:intron | 30.0% |
| TGTGTCTAAACAATGAAACT+TGG | - | chr5_4:40471803-40471822 | Msa0850750:intron | 30.0% | |
| AAATTCAGCAGAAGTAATCA+AGG | - | chr5_4:40471855-40471874 | Msa0850750:intron | 30.0% | |
| AGTAAAAAGAGCAAACAAAC+AGG | + | chr5_4:40472277-40472296 | None:intergenic | 30.0% | |
| AAACGACATTTAAAAAGGAG+CGG | + | chr5_4:40472533-40472552 | None:intergenic | 30.0% | |
| ACTTCGCAAAAATACATCTT+TGG | - | chr5_4:40473131-40473150 | Msa0850750:intron | 30.0% | |
| GACACTTAAAAAGGAATAGA+GGG | - | chr5_4:40473175-40473194 | Msa0850750:intron | 30.0% | |
| AAATACCCCTTAACCTATTA+TGG | + | chr5_4:40473226-40473245 | None:intergenic | 30.0% | |
| CGTTTCTATTCATTTGCATT+CGG | + | chr5_4:40473334-40473353 | None:intergenic | 30.0% | |
| !! | ATGTTCAAGTTTGTTGAATG+TGG | + | chr5_4:40473438-40473457 | None:intergenic | 30.0% |
| TATAATGCCAAAAAGACTGA+CGG | + | chr5_4:40473690-40473709 | None:intergenic | 30.0% | |
| TTGGATATATACTGGTATTG+CGG | - | chr5_4:40473784-40473803 | Msa0850750:intron | 30.0% | |
| ! | TTTTGCTGCTGAAAATACTT+GGG | + | chr5_4:40473819-40473838 | None:intergenic | 30.0% |
| ATTTCTATACTCAGTATGGT+TGG | - | chr5_4:40473865-40473884 | Msa0850750:intron | 30.0% | |
| GTAGTCAAATCGTCTAATTT+GGG | + | chr5_4:40473985-40474004 | None:intergenic | 30.0% | |
| AGTAGTCAAATCGTCTAATT+TGG | + | chr5_4:40473986-40474005 | None:intergenic | 30.0% | |
| TTAGACGATTTGACTACTAA+TGG | - | chr5_4:40473988-40474007 | Msa0850750:intron | 30.0% | |
| ATTTGACTACTAATGGTGTT+AGG | - | chr5_4:40473995-40474014 | Msa0850750:intron | 30.0% | |
| ! | TTTGACTACTAATGGTGTTA+GGG | - | chr5_4:40473996-40474015 | Msa0850750:intron | 30.0% |
| GGAGTTTCTAATTCTATCTA+AGG | - | chr5_4:40474116-40474135 | Msa0850750:intron | 30.0% | |
| ! | ATTACGTCTCTTGTTTGATT+TGG | - | chr5_4:40474183-40474202 | Msa0850750:intron | 30.0% |
| !! | AATTGATTTGTTTGTTGGGA+AGG | + | chr5_4:40474235-40474254 | None:intergenic | 30.0% |
| TTCATCGATACATTTATGAC+TGG | - | chr5_4:40474312-40474331 | Msa0850750:intron | 30.0% | |
| ! | ATGTAAAGAGCTTCAAGTTT+GGG | + | chr5_4:40474368-40474387 | None:intergenic | 30.0% |
| ! | AATGTAAAGAGCTTCAAGTT+TGG | + | chr5_4:40474369-40474388 | None:intergenic | 30.0% |
| TGAAGCTCTTTACATTGAAA+AGG | - | chr5_4:40474373-40474392 | Msa0850750:intron | 30.0% | |
| TCACGTCAATAGATAGTTAT+TGG | - | chr5_4:40474404-40474423 | Msa0850750:intron | 30.0% | |
| TGAAAACAACCAAACATGAT+AGG | - | chr5_4:40474513-40474532 | Msa0850750:intron | 30.0% | |
| ! | AAAGAATGCAAGACTTTTAC+AGG | - | chr5_4:40474643-40474662 | Msa0850750:CDS | 30.0% |
| ! | AAAACTTATCCTCTTTTCCA+AGG | - | chr5_4:40474723-40474742 | Msa0850750:CDS | 30.0% |
| TTCAATAAAAGCTTACATGC+GGG | + | chr5_4:40474755-40474774 | None:intergenic | 30.0% | |
| TACCATGAGTAATGAATTGA+TGG | - | chr5_4:40474797-40474816 | Msa0850750:CDS | 30.0% | |
| ATCCATCAATTCATTACTCA+TGG | + | chr5_4:40474802-40474821 | None:intergenic | 30.0% | |
| TCAATTACCAGCAAATTCTA+TGG | - | chr5_4:40474859-40474878 | Msa0850750:CDS | 30.0% | |
| ! | GCCTTATTCAGAAAATCAAA+AGG | - | chr5_4:40475151-40475170 | Msa0850750:CDS | 30.0% |
| ! | TTTTCTCCGATTTCCAGTTT+GGG | - | chr5_4:40470773-40470792 | Msa0850750:intron | 35.0% |
| TGATGTGTCTGTTAAGAAGA+GGG | - | chr5_4:40470814-40470833 | Msa0850750:intron | 35.0% | |
| TTACTACTCTGCCAGTTAAT+AGG | - | chr5_4:40470846-40470865 | Msa0850750:intron | 35.0% | |
| CTCTTCGATATCTCTCTTTA+TGG | + | chr5_4:40471092-40471111 | None:intergenic | 35.0% | |
| ! | CTTTAGGAACTTCTTCCTTT+CGG | + | chr5_4:40471332-40471351 | None:intergenic | 35.0% |
| !! | GCCTTCTTGATATTAGCTTT+AGG | + | chr5_4:40471348-40471367 | None:intergenic | 35.0% |
| ! | GCAATTTGATGGTCATGTTA+AGG | - | chr5_4:40471411-40471430 | Msa0850750:intron | 35.0% |
| TGTTAAGGAACTTGAGTCAA+AGG | - | chr5_4:40471426-40471445 | Msa0850750:intron | 35.0% | |
| ACCACTAACAAATGGTTGTA+GGG | + | chr5_4:40471581-40471600 | None:intergenic | 35.0% | |
| ! | CCAGCTTGATTTTTCTAATC+CGG | - | chr5_4:40471668-40471687 | Msa0850750:intron | 35.0% |
| CTCGTAGTAGTGAAAAAATC+CGG | + | chr5_4:40471690-40471709 | None:intergenic | 35.0% | |
| CATATTAGATTGAGAACCCA+TGG | + | chr5_4:40471739-40471758 | None:intergenic | 35.0% | |
| !! | TATGTTTTTCAGCAGGTGTT+TGG | - | chr5_4:40471755-40471774 | Msa0850750:intron | 35.0% |
| ! | TGTGCTATTCTTAACGTTGA+TGG | - | chr5_4:40471949-40471968 | Msa0850750:intron | 35.0% |
| ! | GTGCTATTCTTAACGTTGAT+GGG | - | chr5_4:40471950-40471969 | Msa0850750:intron | 35.0% |
| AATCCTATTCAACACCAAAC+TGG | - | chr5_4:40472051-40472070 | Msa0850750:intron | 35.0% | |
| !! | TTTCCAGTTTGGTGTTGAAT+AGG | + | chr5_4:40472057-40472076 | None:intergenic | 35.0% |
| CTAACAATGTGTTTCCAGTT+TGG | + | chr5_4:40472068-40472087 | None:intergenic | 35.0% | |
| TCTCAATGTATTTCGTGTGT+TGG | + | chr5_4:40472124-40472143 | None:intergenic | 35.0% | |
| ! | GAAAGCGTGTGCAAAAAAAT+AGG | - | chr5_4:40473053-40473072 | Msa0850750:intron | 35.0% |
| CGCAAAAATACATCTTTGGT+TGG | - | chr5_4:40473135-40473154 | Msa0850750:intron | 35.0% | |
| CGACACTTAAAAAGGAATAG+AGG | - | chr5_4:40473174-40473193 | Msa0850750:intron | 35.0% | |
| !! | TTCAAGTTTGTTGAATGTGG+TGG | + | chr5_4:40473435-40473454 | None:intergenic | 35.0% |
| GGAAACAAACTTTGTTCTGA+AGG | + | chr5_4:40473522-40473541 | None:intergenic | 35.0% | |
| ! | AAAGTTTGTTTCCAAGTCGT+GGG | - | chr5_4:40473529-40473548 | Msa0850750:intron | 35.0% |
| !! | AATCGGTTTAGTTTGAAGCA+AGG | + | chr5_4:40473730-40473749 | None:intergenic | 35.0% |
| TCGAGGATTTGGATATATAC+TGG | - | chr5_4:40473776-40473795 | Msa0850750:intron | 35.0% | |
| TTTGCTGCTGAAAATACTTG+GGG | + | chr5_4:40473818-40473837 | None:intergenic | 35.0% | |
| ! | GTTTTGCTGCTGAAAATACT+TGG | + | chr5_4:40473820-40473839 | None:intergenic | 35.0% |
| TAGAAATACCCCACAATTTC+AGG | + | chr5_4:40473852-40473871 | None:intergenic | 35.0% | |
| ! | GGGTATTTCTATACTCAGTA+TGG | - | chr5_4:40473861-40473880 | Msa0850750:intron | 35.0% |
| AAGTATGTCACAGAGAACAA+GGG | + | chr5_4:40473920-40473939 | None:intergenic | 35.0% | |
| AAAGTATGTCACAGAGAACA+AGG | + | chr5_4:40473921-40473940 | None:intergenic | 35.0% | |
| ! | TTGACTACTAATGGTGTTAG+GGG | - | chr5_4:40473997-40474016 | Msa0850750:intron | 35.0% |
| !! | GCTTTGATCAAGTTGGATAA+GGG | + | chr5_4:40474057-40474076 | None:intergenic | 35.0% |
| CTGTCAATCATGGCAAAATA+GGG | + | chr5_4:40474471-40474490 | None:intergenic | 35.0% | |
| TGGGTATTTCCTATCATGTT+TGG | + | chr5_4:40474525-40474544 | None:intergenic | 35.0% | |
| AAATGCACCATAGAATTTGC+TGG | + | chr5_4:40474869-40474888 | None:intergenic | 35.0% | |
| ATGTTAGATCCATGAACATC+AGG | + | chr5_4:40475235-40475254 | None:intergenic | 35.0% | |
| TGATGTTCATGGATCTAACA+TGG | - | chr5_4:40475234-40475253 | Msa0850750:CDS | 35.0% | |
| TGGACGACACTATAAAGATT+CGG | + | chr5_4:40475268-40475287 | None:intergenic | 35.0% | |
| ATGATGTTCCTTTGTCACCA+AGG | - | chr5_4:40470750-40470769 | Msa0850750:intron | 40.0% | |
| ! | GTTTTCTCCGATTTCCAGTT+TGG | - | chr5_4:40470772-40470791 | Msa0850750:intron | 40.0% |
| CATGTTCCCAAACTGGAAAT+CGG | + | chr5_4:40470782-40470801 | None:intergenic | 40.0% | |
| ACTATCACATGTTCCCAAAC+TGG | + | chr5_4:40470789-40470808 | None:intergenic | 40.0% | |
| GTGATGTGTCTGTTAAGAAG+AGG | - | chr5_4:40470813-40470832 | Msa0850750:intron | 40.0% | |
| GCTGGGAAAAATTGAAAGGA+AGG | - | chr5_4:40471186-40471205 | Msa0850750:intron | 40.0% | |
| AAGGAAGGAAAAGGAACTGA+AGG | - | chr5_4:40471201-40471220 | Msa0850750:intron | 40.0% | |
| CGGAAATATTAGAGTCCGAA+AGG | - | chr5_4:40471314-40471333 | Msa0850750:intron | 40.0% | |
| GAATGATCGTGCTCAATTGA+AGG | - | chr5_4:40471369-40471388 | Msa0850750:intron | 40.0% | |
| AATGTCTCTGTGCTTAAGGA+GGG | + | chr5_4:40471556-40471575 | None:intergenic | 40.0% | |
| CCACTAACAAATGGTTGTAG+GGG | + | chr5_4:40471580-40471599 | None:intergenic | 40.0% | |
| CACCACTAACAAATGGTTGT+AGG | + | chr5_4:40471582-40471601 | None:intergenic | 40.0% | |
| ! | ACAACCATTTGTTAGTGGTG+TGG | - | chr5_4:40471582-40471601 | Msa0850750:intron | 40.0% |
| CAAAAGAGTAGCTACAGTCA+CGG | + | chr5_4:40471638-40471657 | None:intergenic | 40.0% | |
| ! | CCGGATTAGAAAAATCAAGC+TGG | + | chr5_4:40471671-40471690 | None:intergenic | 40.0% |
| !! | TTTTTCAGCAGGTGTTTGGT+TGG | - | chr5_4:40471759-40471778 | Msa0850750:intron | 40.0% |
| CTGCAGTTGATCAACATATC+CGG | - | chr5_4:40471905-40471924 | Msa0850750:intron | 40.0% | |
| AGTGGTTCAAAGAATTCCAC+CGG | + | chr5_4:40471927-40471946 | None:intergenic | 40.0% | |
| CGTTAAGAATAGCACAAGAG+TGG | + | chr5_4:40471945-40471964 | None:intergenic | 40.0% | |
| CAGTGCAGGTTTATTTGTCT+CGG | - | chr5_4:40472008-40472027 | Msa0850750:intron | 40.0% | |
| AGTGCAGGTTTATTTGTCTC+GGG | - | chr5_4:40472009-40472028 | Msa0850750:intron | 40.0% | |
| ! | TGGTGTTGAATAGGATTACC+TGG | + | chr5_4:40472104-40472123 | None:intergenic | 40.0% |
| !! | TTCGTGTGTTGGTGTTGAAT+AGG | + | chr5_4:40472113-40472132 | None:intergenic | 40.0% |
| !! | AACGCTAATTGATAGCGTGA+AGG | + | chr5_4:40472238-40472257 | None:intergenic | 40.0% |
| CGACATTTAAAAAGAGCGGA+GGG | + | chr5_4:40472479-40472498 | None:intergenic | 40.0% | |
| ACGACATTTAAAAAGAGCGG+AGG | + | chr5_4:40472480-40472499 | None:intergenic | 40.0% | |
| GACATTTAAAAAGGAGCGGA+GGG | + | chr5_4:40472529-40472548 | None:intergenic | 40.0% | |
| AGTGCAAAAGGAAGAAAGAG+TGG | - | chr5_4:40472817-40472836 | Msa0850750:intron | 40.0% | |
| AGAAAGAGTGGAAGACTCAT+TGG | - | chr5_4:40472829-40472848 | Msa0850750:intron | 40.0% | |
| !! | AGGGGTATTTACTTGTACCT+TGG | - | chr5_4:40473236-40473255 | Msa0850750:intron | 40.0% |
| TGTATCGTGTCACACAAGTA+TGG | - | chr5_4:40473271-40473290 | Msa0850750:intron | 40.0% | |
| !! | TTCTGAAGGCATCTTTGGTT+GGG | + | chr5_4:40473508-40473527 | None:intergenic | 40.0% |
| !! | CTTTGTTCTGAAGGCATCTT+TGG | + | chr5_4:40473513-40473532 | None:intergenic | 40.0% |
| ! | CAAAGTTTGTTTCCAAGTCG+TGG | - | chr5_4:40473528-40473547 | Msa0850750:intron | 40.0% |
| AGTAAATATGCCTAGTGTCG+AGG | + | chr5_4:40473586-40473605 | None:intergenic | 40.0% | |
| ! | AAAAAGACTGACGGCTTTGA+GGG | + | chr5_4:40473681-40473700 | None:intergenic | 40.0% |
| ! | TTAGTTTGAAGCAAGGCTTC+TGG | + | chr5_4:40473723-40473742 | None:intergenic | 40.0% |
| !! | GTTTTGCTGCTTCGACAAAT+CGG | + | chr5_4:40473747-40473766 | None:intergenic | 40.0% |
| TTTCAGCAGCAAAACACTTG+TGG | - | chr5_4:40473825-40473844 | Msa0850750:intron | 40.0% | |
| ACTTGTGGTCCTGAAATTGT+GGG | - | chr5_4:40473840-40473859 | Msa0850750:intron | 40.0% | |
| !!! | AGAACAAGGGTTTTGAGCAA+GGG | + | chr5_4:40473907-40473926 | None:intergenic | 40.0% |
| ! | TAATGGTGTTAGGGGAAAGT+CGG | - | chr5_4:40474005-40474024 | Msa0850750:intron | 40.0% |
| !! | GGCTTTGATCAAGTTGGATA+AGG | + | chr5_4:40474058-40474077 | None:intergenic | 40.0% |
| !!! | TTGGTTTTGTGTTGTGCAGT+TGG | - | chr5_4:40474202-40474221 | Msa0850750:intron | 40.0% |
| CCTGTCAATCATGGCAAAAT+AGG | + | chr5_4:40474472-40474491 | None:intergenic | 40.0% | |
| ! | CCTATTTTGCCATGATTGAC+AGG | - | chr5_4:40474469-40474488 | Msa0850750:intron | 40.0% |
| TCATCATCTCCTGTCAATCA+TGG | + | chr5_4:40474481-40474500 | None:intergenic | 40.0% | |
| GATTGACAGGAGATGATGAA+AGG | - | chr5_4:40474482-40474501 | Msa0850750:intron | 40.0% | |
| ATCATGTTCCTGAGTGTGTT+AGG | - | chr5_4:40474546-40474565 | Msa0850750:intron | 40.0% | |
| GTTCCTCAAATACAATGCAG+AGG | - | chr5_4:40474687-40474706 | Msa0850750:CDS | 40.0% | |
| CTTTGCAATGCACCTTTCAT+TGG | - | chr5_4:40474894-40474913 | Msa0850750:CDS | 40.0% | |
| TTGCATGACGAAATCAGAGT+AGG | + | chr5_4:40474994-40475013 | None:intergenic | 40.0% | |
| ! | CTGAATAAGGCATCCGAATA+CGG | + | chr5_4:40475142-40475161 | None:intergenic | 40.0% |
| ! | AGGTTCTAACATGGATGTGT+TGG | - | chr5_4:40475191-40475210 | Msa0850750:CDS | 40.0% |
| !! | TGCGTTGATTGGATCTAACA+TGG | + | chr5_4:40475288-40475307 | None:intergenic | 40.0% |
| ! | GGAGAAAACCTTGGTGACAA+AGG | + | chr5_4:40470761-40470780 | None:intergenic | 45.0% |
| CTGGAAATCGGAGAAAACCT+TGG | + | chr5_4:40470770-40470789 | None:intergenic | 45.0% | |
| ! | AGAGAGATATCGAAGAGTGC+TGG | - | chr5_4:40471095-40471114 | Msa0850750:intron | 45.0% |
| GGCTCTTTGCCAAAAAGTTG+CGG | - | chr5_4:40471222-40471241 | Msa0850750:intron | 45.0% | |
| TGCATCAAGCTCTTTCTCTG+TGG | + | chr5_4:40471269-40471288 | None:intergenic | 45.0% | |
| ! | AGGAGCAGCAAGTTGAAAGA+CGG | - | chr5_4:40471446-40471465 | Msa0850750:intron | 45.0% |
| ! | TGAAAGACGGGCAATGGATT+TGG | - | chr5_4:40471459-40471478 | Msa0850750:intron | 45.0% |
| GATTTGGAAGCTGAACCTTC+CGG | - | chr5_4:40471475-40471494 | Msa0850750:intron | 45.0% | |
| CAATGTCTCTGTGCTTAAGG+AGG | + | chr5_4:40471557-40471576 | None:intergenic | 45.0% | |
| ! | CCCCTACAACCATTTGTTAG+TGG | - | chr5_4:40471577-40471596 | Msa0850750:intron | 45.0% |
| AAGGCCACACCACTAACAAA+TGG | + | chr5_4:40471589-40471608 | None:intergenic | 45.0% | |
| !! | GAAGGAAGGTATCATCGTGA+AGG | + | chr5_4:40471608-40471627 | None:intergenic | 45.0% |
| TACAGTCACGGACATAGTGA+AGG | + | chr5_4:40471626-40471645 | None:intergenic | 45.0% | |
| ! | TGGTTGAAACAAGGCACCAT+GGG | - | chr5_4:40471720-40471739 | Msa0850750:intron | 45.0% |
| CAGTTGATCAACATATCCGG+TGG | - | chr5_4:40471908-40471927 | Msa0850750:intron | 45.0% | |
| ! | TAACGTTGATGGGAGCTGTT+TGG | - | chr5_4:40471960-40471979 | Msa0850750:intron | 45.0% |
| TTATTTGTCTCGGGCTTCTC+CGG | - | chr5_4:40472018-40472037 | Msa0850750:intron | 45.0% | |
| GTTAGTGTTGTCTACTCACC+AGG | - | chr5_4:40472083-40472102 | Msa0850750:intron | 45.0% | |
| GTACGTTAAAAGGTTGCTCG+AGG | - | chr5_4:40472158-40472177 | Msa0850750:intron | 45.0% | |
| ! | AACACGTACTGATAGCGTGA+AGG | + | chr5_4:40472206-40472225 | None:intergenic | 45.0% |
| CGACATTTAAAAAGGAGCGG+AGG | + | chr5_4:40472530-40472549 | None:intergenic | 45.0% | |
| AGACTCATTGGATCGACTGA+TGG | - | chr5_4:40472841-40472860 | Msa0850750:intron | 45.0% | |
| GACTCATTGGATCGACTGAT+GGG | - | chr5_4:40472842-40472861 | Msa0850750:intron | 45.0% | |
| ATACACATGCTTGTGTGCCA+AGG | + | chr5_4:40473256-40473275 | None:intergenic | 45.0% | |
| ! | TGGTGGCGTCAACATTATTG+AGG | + | chr5_4:40473418-40473437 | None:intergenic | 45.0% |
| !! | GTTCTGAAGGCATCTTTGGT+TGG | + | chr5_4:40473509-40473528 | None:intergenic | 45.0% |
| GCAAGTACTACAAACCACGA+AGG | - | chr5_4:40473606-40473625 | Msa0850750:intron | 45.0% | |
| TGAAAGAAGTGAGTCCTTCG+TGG | + | chr5_4:40473623-40473642 | None:intergenic | 45.0% | |
| !! | AAAAGACTGACGGCTTTGAG+GGG | + | chr5_4:40473680-40473699 | None:intergenic | 45.0% |
| CAAAAAGACTGACGGCTTTG+AGG | + | chr5_4:40473682-40473701 | None:intergenic | 45.0% | |
| ! | CTCAAAGCCGTCAGTCTTTT+TGG | - | chr5_4:40473680-40473699 | Msa0850750:intron | 45.0% |
| CACTTGTGGTCCTGAAATTG+TGG | - | chr5_4:40473839-40473858 | Msa0850750:intron | 45.0% | |
| CTTGTGGTCCTGAAATTGTG+GGG | - | chr5_4:40473841-40473860 | Msa0850750:intron | 45.0% | |
| !!! | GAGAACAAGGGTTTTGAGCA+AGG | + | chr5_4:40473908-40473927 | None:intergenic | 45.0% |
| ! | AATGGTGTTAGGGGAAAGTC+GGG | - | chr5_4:40474006-40474025 | Msa0850750:intron | 45.0% |
| !! | GGTAGTGGCTTTGATCAAGT+TGG | + | chr5_4:40474064-40474083 | None:intergenic | 45.0% |
| ACTTGATCAAAGCCACTACC+TGG | - | chr5_4:40474064-40474083 | Msa0850750:intron | 45.0% | |
| ACAGTCAAAAAGCCAGGTAG+TGG | + | chr5_4:40474079-40474098 | None:intergenic | 45.0% | |
| TTGTCGACAGTCAAAAAGCC+AGG | + | chr5_4:40474085-40474104 | None:intergenic | 45.0% | |
| CTGTCGACAATCACTTGATG+TGG | - | chr5_4:40474095-40474114 | Msa0850750:intron | 45.0% | |
| CACACTCAGGAACATGATCT+GGG | + | chr5_4:40474544-40474563 | None:intergenic | 45.0% | |
| ACACACTCAGGAACATGATC+TGG | + | chr5_4:40474545-40474564 | None:intergenic | 45.0% | |
| AGATGAGACCTAACACACTC+AGG | + | chr5_4:40474557-40474576 | None:intergenic | 45.0% | |
| CGACCTCTGCATTGTATTTG+AGG | + | chr5_4:40474693-40474712 | None:intergenic | 45.0% | |
| TAAAAGCTTACATGCGGGAG+AGG | + | chr5_4:40474750-40474769 | None:intergenic | 45.0% | |
| AGATCCATGAACATCAGGCA+GGG | + | chr5_4:40475230-40475249 | None:intergenic | 45.0% | |
| TAGATCCATGAACATCAGGC+AGG | + | chr5_4:40475231-40475250 | None:intergenic | 45.0% | |
| !! | ATTAATTAATGTTAAATATT+TGG | - | chr5_4:40472655-40472674 | Msa0850750:intron | 5.0% |
| !! | AAATAACATATTAAATTTAT+TGG | - | chr5_4:40473025-40473044 | Msa0850750:intron | 5.0% |
| ! | GGTTCTAGTGACTCTGACTC+TGG | - | chr5_4:40470718-40470737 | Msa0850750:CDS | 50.0% |
| !! | GAAGAGTGCTGGAAAGAGCT+TGG | - | chr5_4:40471106-40471125 | Msa0850750:intron | 50.0% |
| ! | GGAGCAGCAAGTTGAAAGAC+GGG | - | chr5_4:40471447-40471466 | Msa0850750:intron | 50.0% |
| ! | GCAAGTTGAAAGACGGGCAA+TGG | - | chr5_4:40471453-40471472 | Msa0850750:intron | 50.0% |
| GCTTAAGGAGGGTCTAGGTA+AGG | + | chr5_4:40471545-40471564 | None:intergenic | 50.0% | |
| TCTGTGCTTAAGGAGGGTCT+AGG | + | chr5_4:40471550-40471569 | None:intergenic | 50.0% | |
| GGGCAATGTCTCTGTGCTTA+AGG | + | chr5_4:40471560-40471579 | None:intergenic | 50.0% | |
| GTCACGGACATAGTGAAGGA+AGG | + | chr5_4:40471622-40471641 | None:intergenic | 50.0% | |
| ! | GCGCATGACTGGTTGAAACA+AGG | - | chr5_4:40471711-40471730 | Msa0850750:intron | 50.0% |
| ! | CTGGTTGAAACAAGGCACCA+TGG | - | chr5_4:40471719-40471738 | Msa0850750:intron | 50.0% |
| TTGATCAACTGCAGCAGCAG+GGG | + | chr5_4:40471899-40471918 | None:intergenic | 50.0% | |
| GTTGATCAACTGCAGCAGCA+GGG | + | chr5_4:40471900-40471919 | None:intergenic | 50.0% | |
| TGTTGATCAACTGCAGCAGC+AGG | + | chr5_4:40471901-40471920 | None:intergenic | 50.0% | |
| TCATTGGATCGACTGATGGG+AGG | - | chr5_4:40472845-40472864 | Msa0850750:intron | 50.0% | |
| ACATAGTGAGACCCACGACT+TGG | + | chr5_4:40473543-40473562 | None:intergenic | 50.0% | |
| !! | TGAAGCAAGGCTTCTGGTTC+TGG | + | chr5_4:40473717-40473736 | None:intergenic | 50.0% |
| GCTGCTGAAAATACTTGGGG+AGG | + | chr5_4:40473815-40473834 | None:intergenic | 50.0% | |
| TTCCTAACACGCGCCGTATT+CGG | - | chr5_4:40475126-40475145 | Msa0850750:CDS | 50.0% | |
| GATCCATGAACATCAGGCAG+GGG | + | chr5_4:40475229-40475248 | None:intergenic | 50.0% | |
| CTACTACGAGTGCGCATGAC+TGG | - | chr5_4:40471700-40471719 | Msa0850750:intron | 55.0% | |
| ! | CAGCAGGTGTTTGGTTGGCT+TGG | - | chr5_4:40471764-40471783 | Msa0850750:intron | 55.0% |
| AGCTGTTTGGAGACGCTTGG+TGG | - | chr5_4:40471973-40471992 | Msa0850750:intron | 55.0% | |
| ! | GGTTTTCTGTGCAGCAGTGC+AGG | - | chr5_4:40471994-40472013 | Msa0850750:intron | 55.0% |
| TCGACTGATGGGAGGTGAAG+AGG | - | chr5_4:40472853-40472872 | Msa0850750:intron | 55.0% | |
| CGACTGATGGGAGGTGAAGA+GGG | - | chr5_4:40472854-40472873 | Msa0850750:intron | 55.0% | |
| ATGTCCTCAGCCTCGACACT+AGG | - | chr5_4:40473573-40473592 | Msa0850750:intron | 55.0% | |
| ! | TATGCCTAGTGTCGAGGCTG+AGG | + | chr5_4:40473580-40473599 | None:intergenic | 55.0% |
| GTCGAAGCAGCAAAACGTCG+TGG | - | chr5_4:40473751-40473770 | Msa0850750:intron | 55.0% | |
| GGGAGAGGTCCTTGGAAAAG+AGG | + | chr5_4:40474735-40474754 | None:intergenic | 55.0% | |
| TTACATGCGGGAGAGGTCCT+TGG | + | chr5_4:40474743-40474762 | None:intergenic | 55.0% | |
| ATCCGAATACGGCGCGTGTT+AGG | + | chr5_4:40475131-40475150 | None:intergenic | 55.0% | |
| ATGAACATCAGGCAGGGGAG+AGG | + | chr5_4:40475224-40475243 | None:intergenic | 55.0% | |
| TCTCCCCTGCCTGATGTTCA+TGG | - | chr5_4:40475223-40475242 | Msa0850750:CDS | 55.0% | |
| ! | AACTGCAGCAGCAGGGGTGT+TGG | + | chr5_4:40471893-40471912 | None:intergenic | 60.0% |
| GGGAGCTGTTTGGAGACGCT+TGG | - | chr5_4:40471970-40471989 | Msa0850750:intron | 60.0% | |
| !! | GACTGACGGCTTTGAGGGGA+TGG | + | chr5_4:40473676-40473695 | None:intergenic | 60.0% |
| AGCAAAACGTCGTGGCGTCG+AGG | - | chr5_4:40473759-40473778 | Msa0850750:intron | 60.0% | |
| ! | ACGTCGTGGCGTCGAGGATT+TGG | - | chr5_4:40473765-40473784 | Msa0850750:intron | 60.0% |
| !! | ACGGCTTTGAGGGGATGGCG+CGG | + | chr5_4:40473671-40473690 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 40470716 | 40475315 | 40470716 | ID=Msa0850750;Name=Msa0850750 |
| chr5_4 | mRNA | 40470716 | 40475315 | 40470716 | ID=Msa0850750-mRNA-1;Parent=Msa0850750;Name=Msa0850750-mRNA-1;_AED=0.32;_eAED=0.34;_QI=0|0|0|0.5|1|1|2|0|239 |
| chr5_4 | exon | 40474633 | 40475315 | 40474633 | ID=Msa0850750-mRNA-1:exon:12770;Parent=Msa0850750-mRNA-1 |
| chr5_4 | exon | 40470716 | 40470752 | 40470716 | ID=Msa0850750-mRNA-1:exon:12769;Parent=Msa0850750-mRNA-1 |
| chr5_4 | CDS | 40474633 | 40475315 | 40474633 | ID=Msa0850750-mRNA-1:cds;Parent=Msa0850750-mRNA-1 |
| chr5_4 | CDS | 40470716 | 40470752 | 40470716 | ID=Msa0850750-mRNA-1:cds;Parent=Msa0850750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
