AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0853100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853100 MtrunA17_Chr5g0429671 100.000 203 0 0 1 203 1 203 7.72e-151 416
Msa0853100 MtrunA17_Chr2g0318961 69.347 199 60 1 4 202 3 200 2.14e-102 294
Msa0853100 MtrunA17_Chr8g0361451 69.347 199 60 1 4 202 3 200 7.04e-101 290
Msa0853100 MtrunA17_Chr2g0280641 65.829 199 67 1 4 202 3 200 3.11e-95 276
Msa0853100 MtrunA17_Chr4g0048841 68.367 196 61 1 7 202 41 235 3.34e-95 277
Msa0853100 MtrunA17_Chr4g0034601 63.959 197 71 0 5 201 52 248 1.12e-91 268
Msa0853100 MtrunA17_Chr5g0403681 60.406 197 78 0 5 201 53 249 1.45e-88 260
Msa0853100 MtrunA17_Chr8g0361461 69.231 117 36 0 86 202 1 117 2.09e-54 169
Msa0853100 MtrunA17_Chr4g0048831 68.376 117 33 1 86 202 1 113 1.93e-52 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0853100 AT5G58800.1 70.792 202 59 0 1 202 1 202 1.57e-108 310
Msa0853100 AT5G58800.2 70.792 202 59 0 1 202 1 202 1.57e-108 310
Msa0853100 AT5G54500.1 71.859 199 55 1 4 202 3 200 2.07e-104 299
Msa0853100 AT4G27270.1 71.357 199 56 1 4 202 3 200 1.32e-103 297
Msa0853100 AT4G27270.3 70.000 190 56 1 13 202 1 189 1.77e-96 279
Msa0853100 AT4G27270.2 70.000 190 56 1 13 202 1 189 1.77e-96 279
Msa0853100 AT4G36750.1 60.406 197 78 0 5 201 74 270 1.51e-89 264
Msa0853100 AT5G54500.2 58.500 200 74 3 4 203 3 193 1.08e-77 233
Msa0853100 AT4G27270.4 73.333 150 39 1 53 202 1 149 3.12e-76 226

Find 82 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATATCTCAAATATTTAT+AGG 0.165936 5_4:-44618234 None:intergenic
GAGGCTGATGCTTTGATATT+TGG 0.205625 5_4:+44617238 Msa0853100:CDS
ATTCGATCCGAAAGAATTTC+AGG 0.264514 5_4:-44617148 None:intergenic
AATTCTTTCGGATCGAATAT+TGG 0.279333 5_4:+44617153 Msa0853100:CDS
CCTATAAATATTTGAGATAT+AGG 0.289235 5_4:+44618234 Msa0853100:three_prime_UTR
TTGTGTGTTGTACTGTTTCC+TGG 0.302957 5_4:+44616078 Msa0853100:five_prime_UTR
GCAAACCTGCTGGAATCTTC+TGG 0.309872 5_4:+44617350 Msa0853100:CDS
GCAGCTACAATCCTAGTAAA+AGG 0.322708 5_4:-44618064 None:intergenic
CTATATCTCAAATATTTATA+GGG 0.323473 5_4:-44618233 None:intergenic
TTTGAGATGGATGAGGTAAA+AGG 0.353976 5_4:+44617838 Msa0853100:CDS
GTAAAAGGAGGCTCGGCTTA+TGG 0.358303 5_4:+44617853 Msa0853100:CDS
GATATATTTATATATTTGTA+TGG 0.358645 5_4:-44616047 None:intergenic
AAGGCCTTCTTTGACGCTAC+TGG 0.365059 5_4:+44617298 Msa0853100:CDS
ATACTCACGCTGAGAGTTCC+TGG 0.369905 5_4:-44617396 None:intergenic
AATTCTAACACTTACCAAAC+TGG 0.374478 5_4:+44615986 Msa0853100:five_prime_UTR
TCAGCTACATCATCTGGTTT+AGG 0.377031 5_4:-44617193 None:intergenic
TTCTGGAGTACTGGATTTAA+CGG 0.377796 5_4:+44617367 Msa0853100:CDS
TGCAGGTATTACTCATTGTA+TGG 0.383898 5_4:+44616920 Msa0853100:intron
AATGTATTTACCCTGGTAAA+AGG 0.394202 5_4:-44617935 None:intergenic
ACAGGTACCTGAAATTCTTT+CGG 0.401906 5_4:+44617141 Msa0853100:intron
TATAAGATCACGTGTGTGTT+TGG 0.403928 5_4:+44618269 Msa0853100:three_prime_UTR
GTTCCCCTTGGATACACCTT+TGG 0.416898 5_4:+44617805 Msa0853100:CDS
TCAGCCTCCACAAGTTGTTC+CGG 0.417062 5_4:-44617223 None:intergenic
TCTGGAGTACTGGATTTAAC+GGG 0.417125 5_4:+44617368 Msa0853100:CDS
AGCAAAACATGCGTCCAGTT+TGG 0.421147 5_4:-44616000 None:intergenic
TTAATGTCAGCTACATCATC+TGG 0.433955 5_4:-44617199 None:intergenic
TTAATTCTTAAGATTGATCC+TGG 0.435877 5_4:+44618324 Msa0853100:three_prime_UTR
AGTTTGGTAAGTGTTAGAAT+TGG 0.439338 5_4:-44615984 None:intergenic
AAGAAGGCCTTGAGCTGGCT+TGG 0.441508 5_4:-44617286 None:intergenic
CACGTGTGTGTTTGGTTCTC+CGG 0.441764 5_4:+44618277 Msa0853100:three_prime_UTR
GGTATGCTTTATGTTCCCCT+TGG 0.446986 5_4:+44617793 Msa0853100:CDS
TGAGGATTATTGATTAATGT+TGG 0.449354 5_4:-44616108 None:intergenic
GCTGGAATCTTCTGGAGTAC+TGG 0.455679 5_4:+44617358 Msa0853100:CDS
GGAGGCTCGGCTTATGGCGC+TGG 0.456356 5_4:+44617859 Msa0853100:CDS
TGACGCTACTGGAGAGTTGT+GGG 0.458101 5_4:+44617309 Msa0853100:CDS
GCACTCGCAGGCAAACCTGC+TGG 0.474276 5_4:+44617340 Msa0853100:CDS
TATGGCGCTGGAACTTTCGC+TGG 0.474798 5_4:+44617871 Msa0853100:CDS
TTGACGCTACTGGAGAGTTG+TGG 0.476817 5_4:+44617308 Msa0853100:CDS
CTTGGATACACCTTTGGAAG+TGG 0.482304 5_4:+44617811 Msa0853100:CDS
TCGAATATTGGAAAAGATGA+AGG 0.496681 5_4:+44617165 Msa0853100:CDS
TTTACAAGTATTTACCATGC+AGG 0.520860 5_4:-44617992 None:intergenic
AAGGTGTTGAAGCAACACTT+TGG 0.525141 5_4:+44616993 Msa0853100:CDS
TACTGAGCTAGAGCTTCAGC+AGG 0.532454 5_4:+44617912 Msa0853100:CDS
GCTGGAACTTTCGCTGGAGA+TGG 0.533057 5_4:+44617877 Msa0853100:CDS
GTATGGAGCTTTGTGTTGTG+TGG 0.534510 5_4:-44616030 None:intergenic
CTCAAACATGCCACTTCCAA+AGG 0.535164 5_4:-44617821 None:intergenic
CGTCAAAGAAGGCCTTGAGC+TGG 0.538429 5_4:-44617291 None:intergenic
CACTTCCAAAGGTGTATCCA+AGG 0.550034 5_4:-44617810 None:intergenic
TGCTGAAGCTCTAGCTCAGT+AGG 0.555488 5_4:-44617910 None:intergenic
GTGTTGAAGCAACACTTTGG+AGG 0.556934 5_4:+44616996 Msa0853100:CDS
CATTAAGCCGGAACAACTTG+TGG 0.557154 5_4:+44617216 Msa0853100:CDS
TGGGCGTCTCAAGCACTCGC+AGG 0.560559 5_4:+44617328 Msa0853100:CDS
GTATGGACATGTGAACACTA+TGG 0.567651 5_4:+44616937 Msa0853100:CDS
TGGAAGTGGCATGTTTGAGA+TGG 0.571222 5_4:+44617825 Msa0853100:CDS
CTCTCCAGTAGCGTCAAAGA+AGG 0.574680 5_4:-44617302 None:intergenic
GGATGAGGTAAAAGGAGGCT+CGG 0.576627 5_4:+44617846 Msa0853100:CDS
CTGGAGTACTGGATTTAACG+GGG 0.577372 5_4:+44617369 Msa0853100:CDS
AAACAAACCTTTGATGTCTG+AGG 0.579244 5_4:-44616126 None:intergenic
ATAACTCAGTTAGCTCATCA+TGG 0.582402 5_4:+44617772 Msa0853100:CDS
TTTCAGCAATGTATTTACCC+TGG 0.584614 5_4:-44617942 None:intergenic
CAAGTATTTACCATGCAGGA+AGG 0.585081 5_4:-44617988 None:intergenic
GCTACATCATCTGGTTTAGG+AGG 0.591266 5_4:-44617190 None:intergenic
ATTAATGTTGGAAAATAACC+AGG 0.591436 5_4:-44616096 None:intergenic
TGTTGAAGCAACACTTTGGA+GGG 0.594022 5_4:+44616997 Msa0853100:CDS
TGATGTAGCTGACATTAAGC+CGG 0.602082 5_4:+44617204 Msa0853100:CDS
GAAAAGTTAACCTTCCTGCA+TGG 0.602198 5_4:+44617978 Msa0853100:exon
GTACTCCAGAAGATTCCAGC+AGG 0.603541 5_4:-44617355 None:intergenic
TATGATGCCAAGCCAGCTCA+AGG 0.606898 5_4:+44617279 Msa0853100:CDS
CAATAATCCTCAGACATCAA+AGG 0.607346 5_4:+44616119 Msa0853100:five_prime_UTR
ACTTCCAAAGGTGTATCCAA+GGG 0.617578 5_4:-44617809 None:intergenic
TGGCATGTTTGAGATGGATG+AGG 0.617807 5_4:+44617831 Msa0853100:CDS
GGCATCATACCAAAACGTGA+AGG 0.648138 5_4:-44617265 None:intergenic
TTAGAAGATGACTATCACCA+AGG 0.664695 5_4:+44616754 Msa0853100:exon
TGGCAAGAGAAGTACACAAG+GGG 0.666285 5_4:+44616957 Msa0853100:CDS
TGCTTACACAATGTAGACCT+TGG 0.673794 5_4:-44616771 None:intergenic
TAAGCCGGAACAACTTGTGG+AGG 0.677801 5_4:+44617219 Msa0853100:CDS
GAGATGGATGAGGTAAAAGG+AGG 0.679998 5_4:+44617841 Msa0853100:CDS
TGGAGTACTGGATTTAACGG+GGG 0.687704 5_4:+44617370 Msa0853100:CDS
CTTCCAAAGGTGTATCCAAG+GGG 0.694155 5_4:-44617808 None:intergenic
TATGGCAAGAGAAGTACACA+AGG 0.698554 5_4:+44616955 Msa0853100:CDS
ATGGCAAGAGAAGTACACAA+GGG 0.726547 5_4:+44616956 Msa0853100:CDS
GGCAAGAGAAGTACACAAGG+GGG 0.735429 5_4:+44616958 Msa0853100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATATTTATATATTTGTA+TGG - chr5_4:44616050-44616069 None:intergenic 10.0%
!! GATATATTTATATATTTGTA+TGG - chr5_4:44616050-44616069 None:intergenic 10.0%
!! AAGTACATAAATTAATTCTT+TGG + chr5_4:44616321-44616340 Msa0853100:intron 15.0%
!!! TAGTATTGATCAAATTAAAA+TGG + chr5_4:44616841-44616860 Msa0853100:intron 15.0%
!! CTATTGTAAAAGAAAATATT+TGG + chr5_4:44617059-44617078 Msa0853100:intron 15.0%
!! TAGTTTAATCATAAAATGTT+TGG + chr5_4:44617545-44617564 Msa0853100:intron 15.0%
!!! TTGGTTTATTTTTTATGTAT+CGG + chr5_4:44617564-44617583 Msa0853100:intron 15.0%
!! CTATATCTCAAATATTTATA+GGG - chr5_4:44618236-44618255 None:intergenic 15.0%
!! AAGTACATAAATTAATTCTT+TGG + chr5_4:44616321-44616340 Msa0853100:intron 15.0%
!!! TAGTATTGATCAAATTAAAA+TGG + chr5_4:44616841-44616860 Msa0853100:intron 15.0%
!! CTATTGTAAAAGAAAATATT+TGG + chr5_4:44617059-44617078 Msa0853100:intron 15.0%
!! TAGTTTAATCATAAAATGTT+TGG + chr5_4:44617545-44617564 Msa0853100:intron 15.0%
!!! TTGGTTTATTTTTTATGTAT+CGG + chr5_4:44617564-44617583 Msa0853100:intron 15.0%
!! CTATATCTCAAATATTTATA+GGG - chr5_4:44618236-44618255 None:intergenic 15.0%
!!! TTGTTCAAAGTAATGAATTT+TGG - chr5_4:44616235-44616254 None:intergenic 20.0%
!! TACATAAATTAATTCTTTGG+AGG + chr5_4:44616324-44616343 Msa0853100:intron 20.0%
!! ATTGTGCAAGTAAAAAAAAA+GGG - chr5_4:44616819-44616838 None:intergenic 20.0%
!! ACTATTTATAAGATAGATAG+AGG - chr5_4:44617431-44617450 None:intergenic 20.0%
!!! TTGAAAGTTTCTAAAAAAGA+GGG - chr5_4:44618095-44618114 None:intergenic 20.0%
!!! TTTGAAAGTTTCTAAAAAAG+AGG - chr5_4:44618096-44618115 None:intergenic 20.0%
!!! TTTTTAACAGAATTCTGTTT+TGG - chr5_4:44618176-44618195 None:intergenic 20.0%
!! CCTATATCTCAAATATTTAT+AGG - chr5_4:44618237-44618256 None:intergenic 20.0%
!!! CCTATAAATATTTGAGATAT+AGG + chr5_4:44618234-44618253 Msa0853100:three_prime_UTR 20.0%
!!! TTGTTCAAAGTAATGAATTT+TGG - chr5_4:44616235-44616254 None:intergenic 20.0%
!! TACATAAATTAATTCTTTGG+AGG + chr5_4:44616324-44616343 Msa0853100:intron 20.0%
!! ATTGTGCAAGTAAAAAAAAA+GGG - chr5_4:44616819-44616838 None:intergenic 20.0%
!! ACTATTTATAAGATAGATAG+AGG - chr5_4:44617431-44617450 None:intergenic 20.0%
!!! TTGAAAGTTTCTAAAAAAGA+GGG - chr5_4:44618095-44618114 None:intergenic 20.0%
!!! TTTGAAAGTTTCTAAAAAAG+AGG - chr5_4:44618096-44618115 None:intergenic 20.0%
!!! TTTTTAACAGAATTCTGTTT+TGG - chr5_4:44618176-44618195 None:intergenic 20.0%
!! CCTATATCTCAAATATTTAT+AGG - chr5_4:44618237-44618256 None:intergenic 20.0%
!!! CCTATAAATATTTGAGATAT+AGG + chr5_4:44618234-44618253 Msa0853100:three_prime_UTR 20.0%
! ATTAATGTTGGAAAATAACC+AGG - chr5_4:44616099-44616118 None:intergenic 25.0%
!! TGAGGATTATTGATTAATGT+TGG - chr5_4:44616111-44616130 None:intergenic 25.0%
! ATTGATCATATGTAGATGTT+AGG - chr5_4:44616184-44616203 None:intergenic 25.0%
! ACATCTACATATGATCAATT+CGG + chr5_4:44616185-44616204 Msa0853100:intron 25.0%
!! TAAATTAATTCTTTGGAGGT+TGG + chr5_4:44616328-44616347 Msa0853100:intron 25.0%
! ATCATGCTAACAAATGTTTA+AGG + chr5_4:44616468-44616487 Msa0853100:intron 25.0%
! TCATGCTAACAAATGTTTAA+GGG + chr5_4:44616469-44616488 Msa0853100:intron 25.0%
!! CTAAGACAATTTTCTTTTCT+GGG - chr5_4:44616509-44616528 None:intergenic 25.0%
!!! TCTAAGACAATTTTCTTTTC+TGG - chr5_4:44616510-44616529 None:intergenic 25.0%
! AAGTAATGTAAGTCAACAAT+AGG - chr5_4:44616590-44616609 None:intergenic 25.0%
! AGTAAAAAAAAAGGGGAAAA+GGG - chr5_4:44616811-44616830 None:intergenic 25.0%
! AAGTAAAAAAAAAGGGGAAA+AGG - chr5_4:44616812-44616831 None:intergenic 25.0%
! TTGTGCAAGTAAAAAAAAAG+GGG - chr5_4:44616818-44616837 None:intergenic 25.0%
! CATTGTGCAAGTAAAAAAAA+AGG - chr5_4:44616820-44616839 None:intergenic 25.0%
!! ATTTGGATTCTTTTGTAGTT+AGG + chr5_4:44617076-44617095 Msa0853100:intron 25.0%
! GGAAAACATATTGTGAAATT+CGG - chr5_4:44617482-44617501 None:intergenic 25.0%
!! TCAAAATCAAATTTTGTCAC+CGG - chr5_4:44618299-44618318 None:intergenic 25.0%
! TTAATTCTTAAGATTGATCC+TGG + chr5_4:44618324-44618343 Msa0853100:three_prime_UTR 25.0%
! ATTAATGTTGGAAAATAACC+AGG - chr5_4:44616099-44616118 None:intergenic 25.0%
!! TGAGGATTATTGATTAATGT+TGG - chr5_4:44616111-44616130 None:intergenic 25.0%
! ATTGATCATATGTAGATGTT+AGG - chr5_4:44616184-44616203 None:intergenic 25.0%
! ACATCTACATATGATCAATT+CGG + chr5_4:44616185-44616204 Msa0853100:intron 25.0%
!! TAAATTAATTCTTTGGAGGT+TGG + chr5_4:44616328-44616347 Msa0853100:intron 25.0%
! ATCATGCTAACAAATGTTTA+AGG + chr5_4:44616468-44616487 Msa0853100:intron 25.0%
! TCATGCTAACAAATGTTTAA+GGG + chr5_4:44616469-44616488 Msa0853100:intron 25.0%
!! CTAAGACAATTTTCTTTTCT+GGG - chr5_4:44616509-44616528 None:intergenic 25.0%
!!! TCTAAGACAATTTTCTTTTC+TGG - chr5_4:44616510-44616529 None:intergenic 25.0%
! AAGTAATGTAAGTCAACAAT+AGG - chr5_4:44616590-44616609 None:intergenic 25.0%
! AGTAAAAAAAAAGGGGAAAA+GGG - chr5_4:44616811-44616830 None:intergenic 25.0%
! AAGTAAAAAAAAAGGGGAAA+AGG - chr5_4:44616812-44616831 None:intergenic 25.0%
! TTGTGCAAGTAAAAAAAAAG+GGG - chr5_4:44616818-44616837 None:intergenic 25.0%
! CATTGTGCAAGTAAAAAAAA+AGG - chr5_4:44616820-44616839 None:intergenic 25.0%
!! ATTTGGATTCTTTTGTAGTT+AGG + chr5_4:44617076-44617095 Msa0853100:intron 25.0%
! GGAAAACATATTGTGAAATT+CGG - chr5_4:44617482-44617501 None:intergenic 25.0%
!! TCAAAATCAAATTTTGTCAC+CGG - chr5_4:44618299-44618318 None:intergenic 25.0%
! TTAATTCTTAAGATTGATCC+TGG + chr5_4:44618324-44618343 Msa0853100:three_prime_UTR 25.0%
AGTTTGGTAAGTGTTAGAAT+TGG - chr5_4:44615987-44616006 None:intergenic 30.0%
AATTCTAACACTTACCAAAC+TGG + chr5_4:44615986-44616005 Msa0853100:five_prime_UTR 30.0%
GTTAGGAAAATCAATCATAC+AGG - chr5_4:44616167-44616186 None:intergenic 30.0%
TCTTATGAACAGCTAAAGTA+TGG - chr5_4:44616281-44616300 None:intergenic 30.0%
ATACTTTAGCTGTTCATAAG+AGG + chr5_4:44616280-44616299 Msa0853100:intron 30.0%
AAAGTGAGTCATGATTCAAT+TGG - chr5_4:44616428-44616447 None:intergenic 30.0%
CAAACAATAACAGTAGGTAA+AGG - chr5_4:44616688-44616707 None:intergenic 30.0%
CAAGATCAAACAATAACAGT+AGG - chr5_4:44616694-44616713 None:intergenic 30.0%
GTAAAAAAAAAGGGGAAAAG+GGG - chr5_4:44616810-44616829 None:intergenic 30.0%
! TGTATCACATCAATTTTTGC+AGG + chr5_4:44616903-44616922 Msa0853100:intron 30.0%
GATTTCAGTTTGATGAAAAC+AGG + chr5_4:44617123-44617142 Msa0853100:intron 30.0%
AATTCTTTCGGATCGAATAT+TGG + chr5_4:44617153-44617172 Msa0853100:CDS 30.0%
TCGAATATTGGAAAAGATGA+AGG + chr5_4:44617165-44617184 Msa0853100:CDS 30.0%
TAAGATAGATAGAGGTCAAA+GGG - chr5_4:44617423-44617442 None:intergenic 30.0%
ATAAGATAGATAGAGGTCAA+AGG - chr5_4:44617424-44617443 None:intergenic 30.0%
CCAAAAACATAAGACACATA+AGG - chr5_4:44617593-44617612 None:intergenic 30.0%
! CCTTATGTGTCTTATGTTTT+TGG + chr5_4:44617590-44617609 Msa0853100:intron 30.0%
AATGTATTTACCCTGGTAAA+AGG - chr5_4:44617938-44617957 None:intergenic 30.0%
TTTACAAGTATTTACCATGC+AGG - chr5_4:44617995-44618014 None:intergenic 30.0%
!!! TAACTTGCTATCCTTTTACT+AGG + chr5_4:44618053-44618072 Msa0853100:three_prime_UTR 30.0%
AGTTTGGTAAGTGTTAGAAT+TGG - chr5_4:44615987-44616006 None:intergenic 30.0%
AATTCTAACACTTACCAAAC+TGG + chr5_4:44615986-44616005 Msa0853100:five_prime_UTR 30.0%
GTTAGGAAAATCAATCATAC+AGG - chr5_4:44616167-44616186 None:intergenic 30.0%
TCTTATGAACAGCTAAAGTA+TGG - chr5_4:44616281-44616300 None:intergenic 30.0%
ATACTTTAGCTGTTCATAAG+AGG + chr5_4:44616280-44616299 Msa0853100:intron 30.0%
AAAGTGAGTCATGATTCAAT+TGG - chr5_4:44616428-44616447 None:intergenic 30.0%
CAAACAATAACAGTAGGTAA+AGG - chr5_4:44616688-44616707 None:intergenic 30.0%
CAAGATCAAACAATAACAGT+AGG - chr5_4:44616694-44616713 None:intergenic 30.0%
GTAAAAAAAAAGGGGAAAAG+GGG - chr5_4:44616810-44616829 None:intergenic 30.0%
! TGTATCACATCAATTTTTGC+AGG + chr5_4:44616903-44616922 Msa0853100:intron 30.0%
GATTTCAGTTTGATGAAAAC+AGG + chr5_4:44617123-44617142 Msa0853100:intron 30.0%
AATTCTTTCGGATCGAATAT+TGG + chr5_4:44617153-44617172 Msa0853100:CDS 30.0%
TCGAATATTGGAAAAGATGA+AGG + chr5_4:44617165-44617184 Msa0853100:CDS 30.0%
TAAGATAGATAGAGGTCAAA+GGG - chr5_4:44617423-44617442 None:intergenic 30.0%
ATAAGATAGATAGAGGTCAA+AGG - chr5_4:44617424-44617443 None:intergenic 30.0%
CCAAAAACATAAGACACATA+AGG - chr5_4:44617593-44617612 None:intergenic 30.0%
! CCTTATGTGTCTTATGTTTT+TGG + chr5_4:44617590-44617609 Msa0853100:intron 30.0%
AATGTATTTACCCTGGTAAA+AGG - chr5_4:44617938-44617957 None:intergenic 30.0%
TTTACAAGTATTTACCATGC+AGG - chr5_4:44617995-44618014 None:intergenic 30.0%
!!! TAACTTGCTATCCTTTTACT+AGG + chr5_4:44618053-44618072 Msa0853100:three_prime_UTR 30.0%
CAATAATCCTCAGACATCAA+AGG + chr5_4:44616119-44616138 Msa0853100:five_prime_UTR 35.0%
AAACAAACCTTTGATGTCTG+AGG - chr5_4:44616129-44616148 None:intergenic 35.0%
TTCATAAGAGGTAAGTTCTG+TGG + chr5_4:44616292-44616311 Msa0853100:intron 35.0%
TTTGATCAATGATCCATGCA+TGG + chr5_4:44616445-44616464 Msa0853100:intron 35.0%
!! AATGTTTAAGGGCGTTGTTT+AGG + chr5_4:44616480-44616499 Msa0853100:intron 35.0%
TAACAGAAGTAGCATATGGT+TGG - chr5_4:44616620-44616639 None:intergenic 35.0%
CAGTTAACAGAAGTAGCATA+TGG - chr5_4:44616624-44616643 None:intergenic 35.0%
! TTTGATCTTGTTGTCCATCA+AGG + chr5_4:44616704-44616723 Msa0853100:intron 35.0%
! TTGATCTTGTTGTCCATCAA+GGG + chr5_4:44616705-44616724 Msa0853100:intron 35.0%
ATGAAATACCAATCCCTTGA+TGG - chr5_4:44616721-44616740 None:intergenic 35.0%
TTAGAAGATGACTATCACCA+AGG + chr5_4:44616754-44616773 Msa0853100:exon 35.0%
TGCAGGTATTACTCATTGTA+TGG + chr5_4:44616920-44616939 Msa0853100:intron 35.0%
GTAGTTAGGATCATTTGTCT+CGG + chr5_4:44617090-44617109 Msa0853100:intron 35.0%
ACAGGTACCTGAAATTCTTT+CGG + chr5_4:44617141-44617160 Msa0853100:intron 35.0%
ATTCGATCCGAAAGAATTTC+AGG - chr5_4:44617151-44617170 None:intergenic 35.0%
TTAATGTCAGCTACATCATC+TGG - chr5_4:44617202-44617221 None:intergenic 35.0%
!!! TTTGGTTTTCCTTCACGTTT+TGG + chr5_4:44617256-44617275 Msa0853100:CDS 35.0%
!! TTCTGGAGTACTGGATTTAA+CGG + chr5_4:44617367-44617386 Msa0853100:CDS 35.0%
AAGATAGATAGAGGTCAAAG+GGG - chr5_4:44617422-44617441 None:intergenic 35.0%
TCCTAATTTCTACTGACATG+TGG + chr5_4:44617456-44617475 Msa0853100:intron 35.0%
! GTTTTCCGCTACATTTTTCT+CGG + chr5_4:44617495-44617514 Msa0853100:intron 35.0%
! TTTTCCGCTACATTTTTCTC+GGG + chr5_4:44617496-44617515 Msa0853100:intron 35.0%
CCTCTTATGAGAGTTATTGA+TGG - chr5_4:44617692-44617711 None:intergenic 35.0%
CCATCAATAACTCTCATAAG+AGG + chr5_4:44617689-44617708 Msa0853100:intron 35.0%
TCAGTTTCCTCTTTATGTCA+TGG + chr5_4:44617733-44617752 Msa0853100:intron 35.0%
ATAACTCAGTTAGCTCATCA+TGG + chr5_4:44617772-44617791 Msa0853100:CDS 35.0%
! TTTGAGATGGATGAGGTAAA+AGG + chr5_4:44617838-44617857 Msa0853100:CDS 35.0%
TTTCAGCAATGTATTTACCC+TGG - chr5_4:44617945-44617964 None:intergenic 35.0%
TATAAGATCACGTGTGTGTT+TGG + chr5_4:44618269-44618288 Msa0853100:three_prime_UTR 35.0%
CAATAATCCTCAGACATCAA+AGG + chr5_4:44616119-44616138 Msa0853100:five_prime_UTR 35.0%
AAACAAACCTTTGATGTCTG+AGG - chr5_4:44616129-44616148 None:intergenic 35.0%
TTCATAAGAGGTAAGTTCTG+TGG + chr5_4:44616292-44616311 Msa0853100:intron 35.0%
TTTGATCAATGATCCATGCA+TGG + chr5_4:44616445-44616464 Msa0853100:intron 35.0%
!! AATGTTTAAGGGCGTTGTTT+AGG + chr5_4:44616480-44616499 Msa0853100:intron 35.0%
TAACAGAAGTAGCATATGGT+TGG - chr5_4:44616620-44616639 None:intergenic 35.0%
CAGTTAACAGAAGTAGCATA+TGG - chr5_4:44616624-44616643 None:intergenic 35.0%
! TTTGATCTTGTTGTCCATCA+AGG + chr5_4:44616704-44616723 Msa0853100:intron 35.0%
! TTGATCTTGTTGTCCATCAA+GGG + chr5_4:44616705-44616724 Msa0853100:intron 35.0%
ATGAAATACCAATCCCTTGA+TGG - chr5_4:44616721-44616740 None:intergenic 35.0%
TTAGAAGATGACTATCACCA+AGG + chr5_4:44616754-44616773 Msa0853100:exon 35.0%
TGCAGGTATTACTCATTGTA+TGG + chr5_4:44616920-44616939 Msa0853100:intron 35.0%
GTAGTTAGGATCATTTGTCT+CGG + chr5_4:44617090-44617109 Msa0853100:intron 35.0%
ACAGGTACCTGAAATTCTTT+CGG + chr5_4:44617141-44617160 Msa0853100:intron 35.0%
ATTCGATCCGAAAGAATTTC+AGG - chr5_4:44617151-44617170 None:intergenic 35.0%
TTAATGTCAGCTACATCATC+TGG - chr5_4:44617202-44617221 None:intergenic 35.0%
!!! TTTGGTTTTCCTTCACGTTT+TGG + chr5_4:44617256-44617275 Msa0853100:CDS 35.0%
!! TTCTGGAGTACTGGATTTAA+CGG + chr5_4:44617367-44617386 Msa0853100:CDS 35.0%
AAGATAGATAGAGGTCAAAG+GGG - chr5_4:44617422-44617441 None:intergenic 35.0%
TCCTAATTTCTACTGACATG+TGG + chr5_4:44617456-44617475 Msa0853100:intron 35.0%
! GTTTTCCGCTACATTTTTCT+CGG + chr5_4:44617495-44617514 Msa0853100:intron 35.0%
! TTTTCCGCTACATTTTTCTC+GGG + chr5_4:44617496-44617515 Msa0853100:intron 35.0%
CCTCTTATGAGAGTTATTGA+TGG - chr5_4:44617692-44617711 None:intergenic 35.0%
CCATCAATAACTCTCATAAG+AGG + chr5_4:44617689-44617708 Msa0853100:intron 35.0%
TCAGTTTCCTCTTTATGTCA+TGG + chr5_4:44617733-44617752 Msa0853100:intron 35.0%
ATAACTCAGTTAGCTCATCA+TGG + chr5_4:44617772-44617791 Msa0853100:CDS 35.0%
! TTTGAGATGGATGAGGTAAA+AGG + chr5_4:44617838-44617857 Msa0853100:CDS 35.0%
TTTCAGCAATGTATTTACCC+TGG - chr5_4:44617945-44617964 None:intergenic 35.0%
TATAAGATCACGTGTGTGTT+TGG + chr5_4:44618269-44618288 Msa0853100:three_prime_UTR 35.0%
TTGTGTGTTGTACTGTTTCC+TGG + chr5_4:44616078-44616097 Msa0853100:five_prime_UTR 40.0%
AACAGCTAAAGTATGGCTAG+AGG - chr5_4:44616274-44616293 None:intergenic 40.0%
TTGTTAGCATGATCCATGCA+TGG - chr5_4:44616461-44616480 None:intergenic 40.0%
TGCTTACACAATGTAGACCT+TGG - chr5_4:44616774-44616793 None:intergenic 40.0%
GTATGGACATGTGAACACTA+TGG + chr5_4:44616937-44616956 Msa0853100:CDS 40.0%
! TATGGCAAGAGAAGTACACA+AGG + chr5_4:44616955-44616974 Msa0853100:CDS 40.0%
! ATGGCAAGAGAAGTACACAA+GGG + chr5_4:44616956-44616975 Msa0853100:CDS 40.0%
!! AAGGTGTTGAAGCAACACTT+TGG + chr5_4:44616993-44617012 Msa0853100:CDS 40.0%
TGTTGAAGCAACACTTTGGA+GGG + chr5_4:44616997-44617016 Msa0853100:CDS 40.0%
! TCAGCTACATCATCTGGTTT+AGG - chr5_4:44617196-44617215 None:intergenic 40.0%
TGATGTAGCTGACATTAAGC+CGG + chr5_4:44617204-44617223 Msa0853100:CDS 40.0%
GAGGCTGATGCTTTGATATT+TGG + chr5_4:44617238-44617257 Msa0853100:CDS 40.0%
!! TCTGGAGTACTGGATTTAAC+GGG + chr5_4:44617368-44617387 Msa0853100:CDS 40.0%
GCCACATGTCAGTAGAAATT+AGG - chr5_4:44617460-44617479 None:intergenic 40.0%
TAGTCCCGAGAAAAATGTAG+CGG - chr5_4:44617503-44617522 None:intergenic 40.0%
TGTTGGAGTTCATGCTTCAT+AGG + chr5_4:44617660-44617679 Msa0853100:intron 40.0%
TCTGCAACCATGACATAAAG+AGG - chr5_4:44617743-44617762 None:intergenic 40.0%
CTTTATGTCATGGTTGCAGA+TGG + chr5_4:44617743-44617762 Msa0853100:intron 40.0%
! ACTTCCAAAGGTGTATCCAA+GGG - chr5_4:44617812-44617831 None:intergenic 40.0%
GAAAAGTTAACCTTCCTGCA+TGG + chr5_4:44617978-44617997 Msa0853100:exon 40.0%
CAAGTATTTACCATGCAGGA+AGG - chr5_4:44617991-44618010 None:intergenic 40.0%
GCAGCTACAATCCTAGTAAA+AGG - chr5_4:44618067-44618086 None:intergenic 40.0%
TTGTGTGTTGTACTGTTTCC+TGG + chr5_4:44616078-44616097 Msa0853100:five_prime_UTR 40.0%
AACAGCTAAAGTATGGCTAG+AGG - chr5_4:44616274-44616293 None:intergenic 40.0%
TTGTTAGCATGATCCATGCA+TGG - chr5_4:44616461-44616480 None:intergenic 40.0%
TGCTTACACAATGTAGACCT+TGG - chr5_4:44616774-44616793 None:intergenic 40.0%
GTATGGACATGTGAACACTA+TGG + chr5_4:44616937-44616956 Msa0853100:CDS 40.0%
! TATGGCAAGAGAAGTACACA+AGG + chr5_4:44616955-44616974 Msa0853100:CDS 40.0%
! ATGGCAAGAGAAGTACACAA+GGG + chr5_4:44616956-44616975 Msa0853100:CDS 40.0%
!! AAGGTGTTGAAGCAACACTT+TGG + chr5_4:44616993-44617012 Msa0853100:CDS 40.0%
TGTTGAAGCAACACTTTGGA+GGG + chr5_4:44616997-44617016 Msa0853100:CDS 40.0%
! TCAGCTACATCATCTGGTTT+AGG - chr5_4:44617196-44617215 None:intergenic 40.0%
TGATGTAGCTGACATTAAGC+CGG + chr5_4:44617204-44617223 Msa0853100:CDS 40.0%
GAGGCTGATGCTTTGATATT+TGG + chr5_4:44617238-44617257 Msa0853100:CDS 40.0%
!! TCTGGAGTACTGGATTTAAC+GGG + chr5_4:44617368-44617387 Msa0853100:CDS 40.0%
GCCACATGTCAGTAGAAATT+AGG - chr5_4:44617460-44617479 None:intergenic 40.0%
TAGTCCCGAGAAAAATGTAG+CGG - chr5_4:44617503-44617522 None:intergenic 40.0%
TGTTGGAGTTCATGCTTCAT+AGG + chr5_4:44617660-44617679 Msa0853100:intron 40.0%
TCTGCAACCATGACATAAAG+AGG - chr5_4:44617743-44617762 None:intergenic 40.0%
CTTTATGTCATGGTTGCAGA+TGG + chr5_4:44617743-44617762 Msa0853100:intron 40.0%
! ACTTCCAAAGGTGTATCCAA+GGG - chr5_4:44617812-44617831 None:intergenic 40.0%
GAAAAGTTAACCTTCCTGCA+TGG + chr5_4:44617978-44617997 Msa0853100:exon 40.0%
CAAGTATTTACCATGCAGGA+AGG - chr5_4:44617991-44618010 None:intergenic 40.0%
GCAGCTACAATCCTAGTAAA+AGG - chr5_4:44618067-44618086 None:intergenic 40.0%
AGCAAAACATGCGTCCAGTT+TGG - chr5_4:44616003-44616022 None:intergenic 45.0%
! GTATGGAGCTTTGTGTTGTG+TGG - chr5_4:44616033-44616052 None:intergenic 45.0%
! CTTGTTGTCCATCAAGGGAT+TGG + chr5_4:44616710-44616729 Msa0853100:intron 45.0%
! TGGCAAGAGAAGTACACAAG+GGG + chr5_4:44616957-44616976 Msa0853100:CDS 45.0%
GTGTTGAAGCAACACTTTGG+AGG + chr5_4:44616996-44617015 Msa0853100:CDS 45.0%
! GCTACATCATCTGGTTTAGG+AGG - chr5_4:44617193-44617212 None:intergenic 45.0%
CATTAAGCCGGAACAACTTG+TGG + chr5_4:44617216-44617235 Msa0853100:CDS 45.0%
GGCATCATACCAAAACGTGA+AGG - chr5_4:44617268-44617287 None:intergenic 45.0%
!! CTGGAGTACTGGATTTAACG+GGG + chr5_4:44617369-44617388 Msa0853100:CDS 45.0%
!! TGGAGTACTGGATTTAACGG+GGG + chr5_4:44617370-44617389 Msa0853100:CDS 45.0%
GGTATGCTTTATGTTCCCCT+TGG + chr5_4:44617793-44617812 Msa0853100:CDS 45.0%
! CTTCCAAAGGTGTATCCAAG+GGG - chr5_4:44617811-44617830 None:intergenic 45.0%
! CACTTCCAAAGGTGTATCCA+AGG - chr5_4:44617813-44617832 None:intergenic 45.0%
! CTTGGATACACCTTTGGAAG+TGG + chr5_4:44617811-44617830 Msa0853100:CDS 45.0%
! CTCAAACATGCCACTTCCAA+AGG - chr5_4:44617824-44617843 None:intergenic 45.0%
TGGAAGTGGCATGTTTGAGA+TGG + chr5_4:44617825-44617844 Msa0853100:CDS 45.0%
! TGGCATGTTTGAGATGGATG+AGG + chr5_4:44617831-44617850 Msa0853100:CDS 45.0%
GAGATGGATGAGGTAAAAGG+AGG + chr5_4:44617841-44617860 Msa0853100:CDS 45.0%
AGCAAAACATGCGTCCAGTT+TGG - chr5_4:44616003-44616022 None:intergenic 45.0%
! GTATGGAGCTTTGTGTTGTG+TGG - chr5_4:44616033-44616052 None:intergenic 45.0%
! CTTGTTGTCCATCAAGGGAT+TGG + chr5_4:44616710-44616729 Msa0853100:intron 45.0%
! TGGCAAGAGAAGTACACAAG+GGG + chr5_4:44616957-44616976 Msa0853100:CDS 45.0%
GTGTTGAAGCAACACTTTGG+AGG + chr5_4:44616996-44617015 Msa0853100:CDS 45.0%
! GCTACATCATCTGGTTTAGG+AGG - chr5_4:44617193-44617212 None:intergenic 45.0%
CATTAAGCCGGAACAACTTG+TGG + chr5_4:44617216-44617235 Msa0853100:CDS 45.0%
GGCATCATACCAAAACGTGA+AGG - chr5_4:44617268-44617287 None:intergenic 45.0%
!! CTGGAGTACTGGATTTAACG+GGG + chr5_4:44617369-44617388 Msa0853100:CDS 45.0%
!! TGGAGTACTGGATTTAACGG+GGG + chr5_4:44617370-44617389 Msa0853100:CDS 45.0%
GGTATGCTTTATGTTCCCCT+TGG + chr5_4:44617793-44617812 Msa0853100:CDS 45.0%
! CTTCCAAAGGTGTATCCAAG+GGG - chr5_4:44617811-44617830 None:intergenic 45.0%
! CACTTCCAAAGGTGTATCCA+AGG - chr5_4:44617813-44617832 None:intergenic 45.0%
! CTTGGATACACCTTTGGAAG+TGG + chr5_4:44617811-44617830 Msa0853100:CDS 45.0%
! CTCAAACATGCCACTTCCAA+AGG - chr5_4:44617824-44617843 None:intergenic 45.0%
TGGAAGTGGCATGTTTGAGA+TGG + chr5_4:44617825-44617844 Msa0853100:CDS 45.0%
! TGGCATGTTTGAGATGGATG+AGG + chr5_4:44617831-44617850 Msa0853100:CDS 45.0%
GAGATGGATGAGGTAAAAGG+AGG + chr5_4:44617841-44617860 Msa0853100:CDS 45.0%
! GGCAAGAGAAGTACACAAGG+GGG + chr5_4:44616958-44616977 Msa0853100:CDS 50.0%
AAGGGGGCAGCTTCAATTGA+AGG + chr5_4:44616974-44616993 Msa0853100:CDS 50.0%
TAAGCCGGAACAACTTGTGG+AGG + chr5_4:44617219-44617238 Msa0853100:CDS 50.0%
TCAGCCTCCACAAGTTGTTC+CGG - chr5_4:44617226-44617245 None:intergenic 50.0%
TATGATGCCAAGCCAGCTCA+AGG + chr5_4:44617279-44617298 Msa0853100:CDS 50.0%
AAGGCCTTCTTTGACGCTAC+TGG + chr5_4:44617298-44617317 Msa0853100:CDS 50.0%
CTCTCCAGTAGCGTCAAAGA+AGG - chr5_4:44617305-44617324 None:intergenic 50.0%
TTGACGCTACTGGAGAGTTG+TGG + chr5_4:44617308-44617327 Msa0853100:CDS 50.0%
TGACGCTACTGGAGAGTTGT+GGG + chr5_4:44617309-44617328 Msa0853100:CDS 50.0%
GCAAACCTGCTGGAATCTTC+TGG + chr5_4:44617350-44617369 Msa0853100:CDS 50.0%
GTACTCCAGAAGATTCCAGC+AGG - chr5_4:44617358-44617377 None:intergenic 50.0%
!! GCTGGAATCTTCTGGAGTAC+TGG + chr5_4:44617358-44617377 Msa0853100:CDS 50.0%
! AGTACTGGATTTAACGGGGG+TGG + chr5_4:44617373-44617392 Msa0853100:CDS 50.0%
ATACTCACGCTGAGAGTTCC+TGG - chr5_4:44617399-44617418 None:intergenic 50.0%
GTTCCCCTTGGATACACCTT+TGG + chr5_4:44617805-44617824 Msa0853100:CDS 50.0%
GGATGAGGTAAAAGGAGGCT+CGG + chr5_4:44617846-44617865 Msa0853100:CDS 50.0%
GTAAAAGGAGGCTCGGCTTA+TGG + chr5_4:44617853-44617872 Msa0853100:CDS 50.0%
! TGCTGAAGCTCTAGCTCAGT+AGG - chr5_4:44617913-44617932 None:intergenic 50.0%
TACTGAGCTAGAGCTTCAGC+AGG + chr5_4:44617912-44617931 Msa0853100:CDS 50.0%
! CTTCAGCAGGCCTTTTACCA+GGG + chr5_4:44617925-44617944 Msa0853100:CDS 50.0%
!! CACGTGTGTGTTTGGTTCTC+CGG + chr5_4:44618277-44618296 Msa0853100:three_prime_UTR 50.0%
! GGCAAGAGAAGTACACAAGG+GGG + chr5_4:44616958-44616977 Msa0853100:CDS 50.0%
AAGGGGGCAGCTTCAATTGA+AGG + chr5_4:44616974-44616993 Msa0853100:CDS 50.0%
TAAGCCGGAACAACTTGTGG+AGG + chr5_4:44617219-44617238 Msa0853100:CDS 50.0%
TCAGCCTCCACAAGTTGTTC+CGG - chr5_4:44617226-44617245 None:intergenic 50.0%
TATGATGCCAAGCCAGCTCA+AGG + chr5_4:44617279-44617298 Msa0853100:CDS 50.0%
AAGGCCTTCTTTGACGCTAC+TGG + chr5_4:44617298-44617317 Msa0853100:CDS 50.0%
CTCTCCAGTAGCGTCAAAGA+AGG - chr5_4:44617305-44617324 None:intergenic 50.0%
TTGACGCTACTGGAGAGTTG+TGG + chr5_4:44617308-44617327 Msa0853100:CDS 50.0%
TGACGCTACTGGAGAGTTGT+GGG + chr5_4:44617309-44617328 Msa0853100:CDS 50.0%
GCAAACCTGCTGGAATCTTC+TGG + chr5_4:44617350-44617369 Msa0853100:CDS 50.0%
GTACTCCAGAAGATTCCAGC+AGG - chr5_4:44617358-44617377 None:intergenic 50.0%
!! GCTGGAATCTTCTGGAGTAC+TGG + chr5_4:44617358-44617377 Msa0853100:CDS 50.0%
! AGTACTGGATTTAACGGGGG+TGG + chr5_4:44617373-44617392 Msa0853100:CDS 50.0%
ATACTCACGCTGAGAGTTCC+TGG - chr5_4:44617399-44617418 None:intergenic 50.0%
GTTCCCCTTGGATACACCTT+TGG + chr5_4:44617805-44617824 Msa0853100:CDS 50.0%
GGATGAGGTAAAAGGAGGCT+CGG + chr5_4:44617846-44617865 Msa0853100:CDS 50.0%
GTAAAAGGAGGCTCGGCTTA+TGG + chr5_4:44617853-44617872 Msa0853100:CDS 50.0%
! TGCTGAAGCTCTAGCTCAGT+AGG - chr5_4:44617913-44617932 None:intergenic 50.0%
TACTGAGCTAGAGCTTCAGC+AGG + chr5_4:44617912-44617931 Msa0853100:CDS 50.0%
! CTTCAGCAGGCCTTTTACCA+GGG + chr5_4:44617925-44617944 Msa0853100:CDS 50.0%
!! CACGTGTGTGTTTGGTTCTC+CGG + chr5_4:44618277-44618296 Msa0853100:three_prime_UTR 50.0%
AAGAAGGCCTTGAGCTGGCT+TGG - chr5_4:44617289-44617308 None:intergenic 55.0%
CGTCAAAGAAGGCCTTGAGC+TGG - chr5_4:44617294-44617313 None:intergenic 55.0%
TGCCTGTGTCCATGTCGTGT+CGG + chr5_4:44617630-44617649 Msa0853100:intron 55.0%
! TATGGCGCTGGAACTTTCGC+TGG + chr5_4:44617871-44617890 Msa0853100:CDS 55.0%
GCTGGAACTTTCGCTGGAGA+TGG + chr5_4:44617877-44617896 Msa0853100:CDS 55.0%
! GCTTCAGCAGGCCTTTTACC+AGG + chr5_4:44617924-44617943 Msa0853100:CDS 55.0%
AAGAAGGCCTTGAGCTGGCT+TGG - chr5_4:44617289-44617308 None:intergenic 55.0%
CGTCAAAGAAGGCCTTGAGC+TGG - chr5_4:44617294-44617313 None:intergenic 55.0%
TGCCTGTGTCCATGTCGTGT+CGG + chr5_4:44617630-44617649 Msa0853100:intron 55.0%
! TATGGCGCTGGAACTTTCGC+TGG + chr5_4:44617871-44617890 Msa0853100:CDS 55.0%
GCTGGAACTTTCGCTGGAGA+TGG + chr5_4:44617877-44617896 Msa0853100:CDS 55.0%
! GCTTCAGCAGGCCTTTTACC+AGG + chr5_4:44617924-44617943 Msa0853100:CDS 55.0%
TGGATTTAACGGGGGTGGCC+AGG + chr5_4:44617378-44617397 Msa0853100:CDS 60.0%
GCCTGTGTCCATGTCGTGTC+GGG + chr5_4:44617631-44617650 Msa0853100:intron 60.0%
ACCCGACACGACATGGACAC+AGG - chr5_4:44617635-44617654 None:intergenic 60.0%
CACGAACACCCGACACGACA+TGG - chr5_4:44617642-44617661 None:intergenic 60.0%
GTCGTGTCGGGTGTTCGTGT+TGG + chr5_4:44617643-44617662 Msa0853100:intron 60.0%
TGGATTTAACGGGGGTGGCC+AGG + chr5_4:44617378-44617397 Msa0853100:CDS 60.0%
GCCTGTGTCCATGTCGTGTC+GGG + chr5_4:44617631-44617650 Msa0853100:intron 60.0%
ACCCGACACGACATGGACAC+AGG - chr5_4:44617635-44617654 None:intergenic 60.0%
CACGAACACCCGACACGACA+TGG - chr5_4:44617642-44617661 None:intergenic 60.0%
GTCGTGTCGGGTGTTCGTGT+TGG + chr5_4:44617643-44617662 Msa0853100:intron 60.0%
TGGGCGTCTCAAGCACTCGC+AGG + chr5_4:44617328-44617347 Msa0853100:CDS 65.0%
GCACTCGCAGGCAAACCTGC+TGG + chr5_4:44617340-44617359 Msa0853100:CDS 65.0%
TGGGCGTCTCAAGCACTCGC+AGG + chr5_4:44617328-44617347 Msa0853100:CDS 65.0%
GCACTCGCAGGCAAACCTGC+TGG + chr5_4:44617340-44617359 Msa0853100:CDS 65.0%
GGAGGCTCGGCTTATGGCGC+TGG + chr5_4:44617859-44617878 Msa0853100:CDS 70.0%
GGAGGCTCGGCTTATGGCGC+TGG + chr5_4:44617859-44617878 Msa0853100:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 44615938 44618347 44615938 ID=Msa0853100;Name=Msa0853100
chr5_4 mRNA 44615938 44618347 44615938 ID=Msa0853100-mRNA-1;Parent=Msa0853100;Name=Msa0853100-mRNA-1;_AED=0.17;_eAED=0.17;_QI=238|1|1|1|0.75|0.6|5|360|203
chr5_4 exon 44615938 44616140 44615938 ID=Msa0853100-mRNA-1:exon:14117;Parent=Msa0853100-mRNA-1
chr5_4 exon 44616726 44616786 44616726 ID=Msa0853100-mRNA-1:exon:14118;Parent=Msa0853100-mRNA-1
chr5_4 exon 44616925 44617018 44616925 ID=Msa0853100-mRNA-1:exon:14119;Parent=Msa0853100-mRNA-1
chr5_4 exon 44617145 44617410 44617145 ID=Msa0853100-mRNA-1:exon:14120;Parent=Msa0853100-mRNA-1
chr5_4 exon 44617762 44618347 44617762 ID=Msa0853100-mRNA-1:exon:14121;Parent=Msa0853100-mRNA-1
chr5_4 five_prime_UTR 44615938 44616140 44615938 ID=Msa0853100-mRNA-1:five_prime_utr;Parent=Msa0853100-mRNA-1
chr5_4 five_prime_UTR 44616726 44616760 44616726 ID=Msa0853100-mRNA-1:five_prime_utr;Parent=Msa0853100-mRNA-1
chr5_4 CDS 44616761 44616786 44616761 ID=Msa0853100-mRNA-1:cds;Parent=Msa0853100-mRNA-1
chr5_4 CDS 44616925 44617018 44616925 ID=Msa0853100-mRNA-1:cds;Parent=Msa0853100-mRNA-1
chr5_4 CDS 44617145 44617410 44617145 ID=Msa0853100-mRNA-1:cds;Parent=Msa0853100-mRNA-1
chr5_4 CDS 44617762 44617987 44617762 ID=Msa0853100-mRNA-1:cds;Parent=Msa0853100-mRNA-1
chr5_4 three_prime_UTR 44617988 44618347 44617988 ID=Msa0853100-mRNA-1:three_prime_utr;Parent=Msa0853100-mRNA-1
Gene Sequence

>Msa0853100

ATGACTATCACCAAGGTCTACATTGTGTATTACTCATTGTATGGACATGTGAACACTATGGCAAGAGAAGTACACAAGGGGGCAGCTTCAATTGAAGGTGTTGAAGCAACACTTTGGAGGGTACCTGAAATTCTTTCGGATCGAATATTGGAAAAGATGAAGGCACCTCCTAAACCAGATGATGTAGCTGACATTAAGCCGGAACAACTTGTGGAGGCTGATGCTTTGATATTTGGTTTTCCTTCACGTTTTGGTATGATGCCAAGCCAGCTCAAGGCCTTCTTTGACGCTACTGGAGAGTTGTGGGCGTCTCAAGCACTCGCAGGCAAACCTGCTGGAATCTTCTGGAGTACTGGATTTAACGGGGGTGGCCAGGAACTCTCAGCATGGACAGCTATAACTCAGTTAGCTCATCATGGTATGCTTTATGTTCCCCTTGGATACACCTTTGGAAGTGGCATGTTTGAGATGGATGAGGTAAAAGGAGGCTCGGCTTATGGCGCTGGAACTTTCGCTGGAGATGGAACTCGTCAACCTACTGAGCTAGAGCTTCAGCAGGCCTTTTACCAGGGTAAATACATTGCTGAAATTGCAAAAAAGTTGAAAAGTTAA
Protein sequence

>Msa0853100

MTITKVYIVYYSLYGHVNTMAREVHKGAASIEGVEATLWRVPEILSDRILEKMKAPPKPDDVADIKPEQLVEADALIFGFPSRFGMMPSQLKAFFDATGELWASQALAGKPAGIFWSTGFNGGGQELSAWTAITQLAHHGMLYVPLGYTFGSGMFEMDEVKGGSAYGAGTFAGDGTRQPTELELQQAFYQGKYIAEIAKKLKS*