AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0609630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609630 MtrunA17_Chr4g0042191 95.410 305 10 1 1 301 1 305 0.0 590
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609630 AT5G54540.1 34.472 322 165 10 1 301 1 297 3.40e-34 126

Find 107 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCTTCACGTCCGCGGTTT+TGG 0.226260 4_2:+56961787 None:intergenic
CAACTATTCCCAATATTATA+TGG 0.251544 4_2:-56959909 Msa0609630:three_prime_UTR
TTTGGTACTGCGGTACTTTA+TGG 0.268825 4_2:-56959764 Msa0609630:three_prime_UTR
GCGTCGCTAGGTCAGGCTTC+AGG 0.268972 4_2:-56961892 Msa0609630:CDS
GCCTCTGCACACGTCGGTTT+CGG 0.293742 4_2:-56961768 Msa0609630:CDS
ATGACAGCATTCCATATGTT+TGG 0.317466 4_2:+56960653 None:intergenic
TTTCTTGAACGCATGGCTTT+GGG 0.336909 4_2:-56959875 Msa0609630:three_prime_UTR
GCTAGCAACTGATTGGATAA+TGG 0.370522 4_2:-56961960 Msa0609630:exon
GACGCCGATGCCGGCGAGCT+TGG 0.375606 4_2:+56961910 None:intergenic
CGTCGCTAGGTCAGGCTTCA+GGG 0.385353 4_2:-56961891 Msa0609630:CDS
TACTTTACCCGTTTGATGTA+CGG 0.389654 4_2:-56959830 Msa0609630:three_prime_UTR
TGCTGATGGAGGCAGTTTCA+TGG 0.399854 4_2:-56960255 Msa0609630:CDS
TTTCATGGGATTGGCAGTTA+TGG 0.406291 4_2:-56960207 Msa0609630:CDS
TGACAGCATTCCATATGTTT+GGG 0.407069 4_2:+56960654 None:intergenic
ATTGGCAGTTATGGTGATAA+TGG 0.408540 4_2:-56960198 Msa0609630:CDS
CTAGCAACTGATTGGATAAT+GGG 0.408637 4_2:-56961959 Msa0609630:exon
AGCCTCAACAAGACAATCCT+TGG 0.412702 4_2:+56960928 None:intergenic
TTCTTCGAATCACAGCTTGC+AGG 0.414030 4_2:-56960608 Msa0609630:intron
GCAGCCAAGCTCGCCGGCAT+CGG 0.414205 4_2:-56961914 Msa0609630:CDS
CAGCGAAGCTAGCAACTGAT+TGG 0.414342 4_2:-56961967 Msa0609630:five_prime_UTR
ATTTGTCTTTCTCAACTGTT+GGG 0.421154 4_2:+56960288 None:intergenic
GATTTGTCTTTCTCAACTGT+TGG 0.425812 4_2:+56960287 None:intergenic
TGAGGCTATTTCAAATCCTT+CGG 0.427999 4_2:-56960912 Msa0609630:CDS
GGCATCGGCGTCGCTAGGTC+AGG 0.434066 4_2:-56961899 Msa0609630:CDS
ACATTGGCCCGTACATCAAA+CGG 0.440044 4_2:+56959822 None:intergenic
GAAGCTGACAGTTACTGAAA+TGG 0.440322 4_2:-56960345 Msa0609630:CDS
TTGCTTGTGACCCAAACATA+TGG 0.441449 4_2:-56960664 Msa0609630:CDS
TTTCGGAGGATTTGAATGAC+TGG 0.442439 4_2:-56961751 Msa0609630:CDS
GGGAGGAAGTTTCATGGGAT+TGG 0.442750 4_2:-56960216 Msa0609630:CDS
ACTTTACCCGTTTGATGTAC+GGG 0.442867 4_2:-56959829 Msa0609630:three_prime_UTR
GGTTCTGTCTCCTTCTCCCA+AGG 0.446630 4_2:-56960945 Msa0609630:CDS
GCAACTGCAGATTCAACAAA+TGG 0.455044 4_2:-56960473 Msa0609630:intron
TAGCTCAAGTGTTGAGGCCC+AGG 0.460395 4_2:-56960855 Msa0609630:intron
TCGCCGGCATCGGCGTCGCT+AGG 0.463408 4_2:-56961904 Msa0609630:CDS
ACATTTCCTGACTGAGACTC+AGG 0.469584 4_2:+56960398 None:intergenic
CCTACGCCGAGAATGGTGTT+TGG 0.473022 4_2:-56961686 Msa0609630:CDS
ATCTCATGGTAGTGAAGTCT+TGG 0.480550 4_2:-56960966 Msa0609630:CDS
TCCCAAGGATTGTCTTGTTG+AGG 0.484050 4_2:-56960930 Msa0609630:CDS
TCCTCCGCTTCCTTCAACGT+CGG 0.485697 4_2:+56961656 None:intergenic
TATGTTTGGGTCACAAGCAA+TGG 0.494032 4_2:+56960667 None:intergenic
CGAGACCATTGTTTCTCCGC+AGG 0.494250 4_2:+56961851 None:intergenic
GGCTTTGGGAAAGTGTGGAT+TGG 0.499673 4_2:-56959861 Msa0609630:three_prime_UTR
TTCTCAATTTGAGAATTAGC+AGG 0.502174 4_2:+56960992 None:intergenic
CACAGTGAAAATGTTCAGAT+TGG 0.502268 4_2:+56959787 None:intergenic
TGTCGTGGGAGGAAGTTTCA+TGG 0.507727 4_2:-56960222 Msa0609630:CDS
CATTGGCCCGTACATCAAAC+GGG 0.508974 4_2:+56959823 None:intergenic
TGGAGAGCCTACGCCGAGAA+TGG 0.509702 4_2:-56961693 Msa0609630:CDS
ACCTCTCCAAACACCATTCT+CGG 0.512931 4_2:+56961680 None:intergenic
TGACCTAGCGACGCCGATGC+CGG 0.514560 4_2:+56961901 None:intergenic
AAATCTTCAGCTGATGCTGA+TGG 0.518948 4_2:-56960269 Msa0609630:CDS
AAGCAACTGAAAAGCGTGAA+TGG 0.519901 4_2:+56960877 None:intergenic
GAAAAGCCTGAGTCTCAGTC+AGG 0.524090 4_2:-56960404 Msa0609630:CDS
CATAAACAAATCACTTTCAT+CGG 0.525463 4_2:+56961721 None:intergenic
CTGCGGAGAAACAATGGTCT+CGG 0.525976 4_2:-56961850 Msa0609630:CDS
TTCGGAGGATTTGAATGACT+GGG 0.534180 4_2:-56961750 Msa0609630:CDS
GTTGCTTAGCTCAAGTGTTG+AGG 0.535470 4_2:-56960861 Msa0609630:CDS
CCCTCGTCGGCGATGAGGCG+CGG 0.537738 4_2:+56961825 None:intergenic
AGGACGGCAGCCAAGCTCGC+CGG 0.539761 4_2:-56961920 Msa0609630:CDS
GATTGGATAATGGGCGGTGG+CGG 0.542192 4_2:-56961950 Msa0609630:exon
GCCTCAACAAGACAATCCTT+GGG 0.548704 4_2:+56960929 None:intergenic
AAAGCGTGAATGGCATGCTT+AGG 0.550944 4_2:+56960887 None:intergenic
AGTGATTTGTTTATGTCGAG+TGG 0.551557 4_2:-56961713 Msa0609630:CDS
GGTTCCGACGTTGAAGGAAG+CGG 0.551831 4_2:-56961660 Msa0609630:CDS
TTTGAGAATTAGCAGGTGAA+AGG 0.552733 4_2:+56960999 None:intergenic
CGTATCCTGCGGAGAAACAA+TGG 0.555163 4_2:-56961856 Msa0609630:CDS
GTCGTGGGAGGAAGTTTCAT+GGG 0.556777 4_2:-56960221 Msa0609630:CDS
CGCATGGCTTTGGGAAAGTG+TGG 0.565506 4_2:-56959866 Msa0609630:three_prime_UTR
TCGAAGAAACTAGTCACTGC+AGG 0.567121 4_2:+56960623 None:intergenic
ATGGATTATAAGAATGTCGT+GGG 0.569424 4_2:-56960236 Msa0609630:CDS
GAAATGGAGTCTTCATGCAC+AGG 0.574097 4_2:-56959983 Msa0609630:three_prime_UTR
CATGGATTATAAGAATGTCG+TGG 0.578660 4_2:-56960237 Msa0609630:CDS
CAAATTGAGAACTCATCTCA+TGG 0.582375 4_2:-56960980 Msa0609630:CDS
TTTCACTGTGTTTGGTACTG+CGG 0.584657 4_2:-56959774 Msa0609630:three_prime_UTR
TGGAGAGGTTCCGACGTTGA+AGG 0.586309 4_2:-56961666 Msa0609630:CDS
CGGTGGCGGAACGATGAGGA+CGG 0.587249 4_2:-56961936 Msa0609630:CDS
GAAGGAAGCGGAGGAAGCCA+CGG 0.589709 4_2:-56961648 Msa0609630:CDS
ACAAGACAATCCTTGGGAGA+AGG 0.590276 4_2:+56960935 None:intergenic
ACCGCGCCTCATCGCCGACG+AGG 0.591542 4_2:-56961826 Msa0609630:CDS
GTCGCTAGGTCAGGCTTCAG+GGG 0.594901 4_2:-56961890 Msa0609630:CDS
TCTGCACACGTCGGTTTCGG+AGG 0.596631 4_2:-56961765 Msa0609630:CDS
CGCGTGCTTCAATTCAGCCG+TGG 0.599375 4_2:+56961631 None:intergenic
CCAAACACCATTCTCGGCGT+AGG 0.600029 4_2:+56961686 None:intergenic
GAAAACATAGAAGCTGTGAA+AGG 0.600372 4_2:+56959704 None:intergenic
CCGCGCCTCATCGCCGACGA+GGG 0.606141 4_2:-56961825 Msa0609630:intron
GTGCAGAGGCTTCACGTCCG+CGG 0.607881 4_2:+56961781 None:intergenic
TCCGAAACCGACGTGTGCAG+AGG 0.608510 4_2:+56961767 None:intergenic
ACGGGCCAATGTGTTCGTCA+TGG 0.610661 4_2:-56959811 Msa0609630:three_prime_UTR
GCCGAGAATGGTGTTTGGAG+AGG 0.611441 4_2:-56961681 Msa0609630:CDS
TCTTCAGCTGATGCTGATGG+AGG 0.613380 4_2:-56960266 Msa0609630:CDS
GTCAGGCTTCAGGGGAACCA+CGG 0.616706 4_2:-56961882 Msa0609630:CDS
ACTGATTGGATAATGGGCGG+TGG 0.623434 4_2:-56961953 Msa0609630:exon
CCCTGAGATAAAACCCTCGT+CGG 0.630010 4_2:+56961812 None:intergenic
CGGTACTTTATGGATAATCA+CGG 0.635819 4_2:-56959754 Msa0609630:three_prime_UTR
ATGGCATGCTTAGGCACCGA+AGG 0.637271 4_2:+56960896 None:intergenic
TGGGCGGTGGCGGAACGATG+AGG 0.643041 4_2:-56961940 Msa0609630:CDS
TTGGTCCATGACGAACACAT+TGG 0.651624 4_2:+56959806 None:intergenic
TCCGACGTTGAAGGAAGCGG+AGG 0.652735 4_2:-56961657 Msa0609630:CDS
TAAAACCCTCGTCGGCGATG+AGG 0.653238 4_2:+56961820 None:intergenic
TGGAGTCTTCATGCACAGGT+CGG 0.656975 4_2:-56959979 Msa0609630:three_prime_UTR
GATTATAAGAATGTCGTGGG+AGG 0.659415 4_2:-56960233 Msa0609630:CDS
AGAGAGCCTAAACACTCACT+AGG 0.661053 4_2:-56960163 Msa0609630:exon
ATCTCAGGGGACCAAAACCG+CGG 0.669256 4_2:-56961798 Msa0609630:intron
GCAACTGATTGGATAATGGG+CGG 0.691401 4_2:-56961956 Msa0609630:exon
AAAACGACAAGAAAGGTCGA+CGG 0.693646 4_2:+56960128 None:intergenic
CTCCGCAGGATACGTAACCG+TGG 0.700047 4_2:+56961865 None:intergenic
CGTGAAGCCTCTGCACACGT+CGG 0.703926 4_2:-56961774 Msa0609630:CDS
AACCACGGTTACGTATCCTG+CGG 0.727599 4_2:-56961867 Msa0609630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTATTAGTTTCTTT+TGG - chr4_2:56960179-56960198 Msa0609630:CDS 10.0%
!!! TATTATTTATTAGTTTCTTT+TGG - chr4_2:56960179-56960198 Msa0609630:CDS 10.0%
!!! TTGATGTTTAATTTTGATTT+AGG - chr4_2:56960121-56960140 Msa0609630:three_prime_UTR 15.0%
!! ATAAGTAAATATAACTTATC+AGG + chr4_2:56960563-56960582 None:intergenic 15.0%
!!! TTGATGTTTAATTTTGATTT+AGG - chr4_2:56960121-56960140 Msa0609630:three_prime_UTR 15.0%
!! ATAAGTAAATATAACTTATC+AGG + chr4_2:56960563-56960582 None:intergenic 15.0%
!!! TTTTGGTTGATAATAGTTTT+AGG - chr4_2:56960196-56960215 Msa0609630:CDS 20.0%
!!! TTTGGTTGATAATAGTTTTA+GGG - chr4_2:56960197-56960216 Msa0609630:CDS 20.0%
!! AGATAAAAACACAAAAAAAG+TGG + chr4_2:56961131-56961150 None:intergenic 20.0%
!!! AGGAAATGTTTTTGATTTTA+TGG - chr4_2:56961285-56961304 Msa0609630:intron 20.0%
!!! GGAAATGTTTTTGATTTTAT+GGG - chr4_2:56961286-56961305 Msa0609630:intron 20.0%
!!! GAATATGTTTTGAAAGAAAT+TGG + chr4_2:56961362-56961381 None:intergenic 20.0%
!!! TTTTCTTTTTTGAGTAGAAA+TGG - chr4_2:56961670-56961689 Msa0609630:CDS 20.0%
!! GTGAAAAACCATATAATATT+GGG + chr4_2:56961771-56961790 None:intergenic 20.0%
!! AGTGAAAAACCATATAATAT+TGG + chr4_2:56961772-56961791 None:intergenic 20.0%
!!! TTTTGGTTGATAATAGTTTT+AGG - chr4_2:56960196-56960215 Msa0609630:CDS 20.0%
!!! TTTGGTTGATAATAGTTTTA+GGG - chr4_2:56960197-56960216 Msa0609630:CDS 20.0%
!! AGATAAAAACACAAAAAAAG+TGG + chr4_2:56961131-56961150 None:intergenic 20.0%
!!! AGGAAATGTTTTTGATTTTA+TGG - chr4_2:56961285-56961304 Msa0609630:intron 20.0%
!!! GGAAATGTTTTTGATTTTAT+GGG - chr4_2:56961286-56961305 Msa0609630:intron 20.0%
!!! GAATATGTTTTGAAAGAAAT+TGG + chr4_2:56961362-56961381 None:intergenic 20.0%
!!! TTTTCTTTTTTGAGTAGAAA+TGG - chr4_2:56961670-56961689 Msa0609630:CDS 20.0%
!! GTGAAAAACCATATAATATT+GGG + chr4_2:56961771-56961790 None:intergenic 20.0%
!! AGTGAAAAACCATATAATAT+TGG + chr4_2:56961772-56961791 None:intergenic 20.0%
! CATAAACAAATCACTTTCAT+CGG + chr4_2:56959951-56959970 None:intergenic 25.0%
! GTAACTATTTGTTTATGTGT+CGG - chr4_2:56960338-56960357 Msa0609630:CDS 25.0%
! ATTGAATTGTCGATATTATG+TGG - chr4_2:56960373-56960392 Msa0609630:CDS 25.0%
! TTGAATTGTCGATATTATGT+GGG - chr4_2:56960374-56960393 Msa0609630:CDS 25.0%
! ATATATATGCTATTCTTGAC+TGG - chr4_2:56960417-56960436 Msa0609630:CDS 25.0%
! GGTTAATTTCTCAGTAAATT+TGG - chr4_2:56960475-56960494 Msa0609630:intron 25.0%
! AACAAATCAAAATACTCAGA+TGG + chr4_2:56960524-56960543 None:intergenic 25.0%
! TACTTATTATGTGTTTATCC+TGG - chr4_2:56960576-56960595 Msa0609630:intron 25.0%
! TCTAATCTAGATACGAAATA+AGG + chr4_2:56960847-56960866 None:intergenic 25.0%
! TATCTGAATATGTTTATGCT+TGG - chr4_2:56960918-56960937 Msa0609630:CDS 25.0%
! ATCTGAATATGTTTATGCTT+GGG - chr4_2:56960919-56960938 Msa0609630:CDS 25.0%
! CAACTATTCCCAATATTATA+TGG - chr4_2:56961760-56961779 Msa0609630:CDS 25.0%
! CATAAACAAATCACTTTCAT+CGG + chr4_2:56959951-56959970 None:intergenic 25.0%
! GTAACTATTTGTTTATGTGT+CGG - chr4_2:56960338-56960357 Msa0609630:CDS 25.0%
! ATTGAATTGTCGATATTATG+TGG - chr4_2:56960373-56960392 Msa0609630:CDS 25.0%
! TTGAATTGTCGATATTATGT+GGG - chr4_2:56960374-56960393 Msa0609630:CDS 25.0%
! ATATATATGCTATTCTTGAC+TGG - chr4_2:56960417-56960436 Msa0609630:CDS 25.0%
! GGTTAATTTCTCAGTAAATT+TGG - chr4_2:56960475-56960494 Msa0609630:intron 25.0%
! AACAAATCAAAATACTCAGA+TGG + chr4_2:56960524-56960543 None:intergenic 25.0%
! TACTTATTATGTGTTTATCC+TGG - chr4_2:56960576-56960595 Msa0609630:intron 25.0%
! TCTAATCTAGATACGAAATA+AGG + chr4_2:56960847-56960866 None:intergenic 25.0%
! TATCTGAATATGTTTATGCT+TGG - chr4_2:56960918-56960937 Msa0609630:CDS 25.0%
! ATCTGAATATGTTTATGCTT+GGG - chr4_2:56960919-56960938 Msa0609630:CDS 25.0%
! CAACTATTCCCAATATTATA+TGG - chr4_2:56961760-56961779 Msa0609630:CDS 25.0%
! CATGTTAATTTTTGCGTTAG+AGG - chr4_2:56960278-56960297 Msa0609630:CDS 30.0%
ATATCGACAATTCAATCTGA+AGG + chr4_2:56960369-56960388 None:intergenic 30.0%
!!! TATTCTTGACTGGTTTTGTA+AGG - chr4_2:56960427-56960446 Msa0609630:CDS 30.0%
TTATTATGTGTTTATCCTGG+TGG - chr4_2:56960579-56960598 Msa0609630:intron 30.0%
TTCTCAATTTGAGAATTAGC+AGG + chr4_2:56960680-56960699 None:intergenic 30.0%
CACAAAAAAAGTGGATACAA+AGG + chr4_2:56961122-56961141 None:intergenic 30.0%
!! TGTGTTTTTATCTTTTGTGC+TGG - chr4_2:56961138-56961157 Msa0609630:intron 30.0%
ATTTGTCTTTCTCAACTGTT+GGG + chr4_2:56961384-56961403 None:intergenic 30.0%
! ATGGATTATAAGAATGTCGT+GGG - chr4_2:56961433-56961452 Msa0609630:intron 30.0%
AGCATTAAAAACGACAAGAA+AGG + chr4_2:56961551-56961570 None:intergenic 30.0%
! CATGTTAATTTTTGCGTTAG+AGG - chr4_2:56960278-56960297 Msa0609630:CDS 30.0%
ATATCGACAATTCAATCTGA+AGG + chr4_2:56960369-56960388 None:intergenic 30.0%
!!! TATTCTTGACTGGTTTTGTA+AGG - chr4_2:56960427-56960446 Msa0609630:CDS 30.0%
TTATTATGTGTTTATCCTGG+TGG - chr4_2:56960579-56960598 Msa0609630:intron 30.0%
TTCTCAATTTGAGAATTAGC+AGG + chr4_2:56960680-56960699 None:intergenic 30.0%
CACAAAAAAAGTGGATACAA+AGG + chr4_2:56961122-56961141 None:intergenic 30.0%
!! TGTGTTTTTATCTTTTGTGC+TGG - chr4_2:56961138-56961157 Msa0609630:intron 30.0%
ATTTGTCTTTCTCAACTGTT+GGG + chr4_2:56961384-56961403 None:intergenic 30.0%
! ATGGATTATAAGAATGTCGT+GGG - chr4_2:56961433-56961452 Msa0609630:intron 30.0%
AGCATTAAAAACGACAAGAA+AGG + chr4_2:56961551-56961570 None:intergenic 30.0%
CTAGCAACTGATTGGATAAT+GGG - chr4_2:56959710-56959729 Msa0609630:three_prime_UTR 35.0%
!! AGTGATTTGTTTATGTCGAG+TGG - chr4_2:56959956-56959975 Msa0609630:three_prime_UTR 35.0%
TTGAGTTTGTCTTTGTCCAT+TGG - chr4_2:56960450-56960469 Msa0609630:CDS 35.0%
CTGAGAAATTAACCATCCAA+TGG + chr4_2:56960469-56960488 None:intergenic 35.0%
!! TTTATCCTGGTGGATTATCT+TGG - chr4_2:56960589-56960608 Msa0609630:intron 35.0%
TTTGAGAATTAGCAGGTGAA+AGG + chr4_2:56960673-56960692 None:intergenic 35.0%
CAAATTGAGAACTCATCTCA+TGG - chr4_2:56960689-56960708 Msa0609630:intron 35.0%
! TGAGGCTATTTCAAATCCTT+CGG - chr4_2:56960757-56960776 Msa0609630:intron 35.0%
CGAAATAAGGTATGTTACCT+GGG + chr4_2:56960834-56960853 None:intergenic 35.0%
ACGAAATAAGGTATGTTACC+TGG + chr4_2:56960835-56960854 None:intergenic 35.0%
TGACAGCATTCCATATGTTT+GGG + chr4_2:56961018-56961037 None:intergenic 35.0%
ATGACAGCATTCCATATGTT+TGG + chr4_2:56961019-56961038 None:intergenic 35.0%
! ATAAGAGACTGGTTGGATAA+TGG + chr4_2:56961090-56961109 None:intergenic 35.0%
AAAAGTGGATACAAAGGACA+TGG + chr4_2:56961116-56961135 None:intergenic 35.0%
! TGCTGGATTTTCATGCAAAT+TGG - chr4_2:56961155-56961174 Msa0609630:intron 35.0%
! GCTGGATTTTCATGCAAATT+GGG - chr4_2:56961156-56961175 Msa0609630:intron 35.0%
TGTAGAAACTCCTGAAAAAG+AGG - chr4_2:56961243-56961262 Msa0609630:intron 35.0%
GATTTGTCTTTCTCAACTGT+TGG + chr4_2:56961385-56961404 None:intergenic 35.0%
! CATGGATTATAAGAATGTCG+TGG - chr4_2:56961432-56961451 Msa0609630:intron 35.0%
ATTGGCAGTTATGGTGATAA+TGG - chr4_2:56961471-56961490 Msa0609630:intron 35.0%
!!! TCACTTTTTTCTTGAACGCA+TGG - chr4_2:56961787-56961806 Msa0609630:CDS 35.0%
TACTTTACCCGTTTGATGTA+CGG - chr4_2:56961839-56961858 Msa0609630:CDS 35.0%
CACAGTGAAAATGTTCAGAT+TGG + chr4_2:56961885-56961904 None:intergenic 35.0%
! CTGAACATTTTCACTGTGTT+TGG - chr4_2:56961887-56961906 Msa0609630:CDS 35.0%
CGGTACTTTATGGATAATCA+CGG - chr4_2:56961915-56961934 Msa0609630:CDS 35.0%
CTAGCAACTGATTGGATAAT+GGG - chr4_2:56959710-56959729 Msa0609630:three_prime_UTR 35.0%
!! AGTGATTTGTTTATGTCGAG+TGG - chr4_2:56959956-56959975 Msa0609630:three_prime_UTR 35.0%
TTGAGTTTGTCTTTGTCCAT+TGG - chr4_2:56960450-56960469 Msa0609630:CDS 35.0%
CTGAGAAATTAACCATCCAA+TGG + chr4_2:56960469-56960488 None:intergenic 35.0%
!! TTTATCCTGGTGGATTATCT+TGG - chr4_2:56960589-56960608 Msa0609630:intron 35.0%
TTTGAGAATTAGCAGGTGAA+AGG + chr4_2:56960673-56960692 None:intergenic 35.0%
CAAATTGAGAACTCATCTCA+TGG - chr4_2:56960689-56960708 Msa0609630:intron 35.0%
! TGAGGCTATTTCAAATCCTT+CGG - chr4_2:56960757-56960776 Msa0609630:intron 35.0%
CGAAATAAGGTATGTTACCT+GGG + chr4_2:56960834-56960853 None:intergenic 35.0%
ACGAAATAAGGTATGTTACC+TGG + chr4_2:56960835-56960854 None:intergenic 35.0%
TGACAGCATTCCATATGTTT+GGG + chr4_2:56961018-56961037 None:intergenic 35.0%
ATGACAGCATTCCATATGTT+TGG + chr4_2:56961019-56961038 None:intergenic 35.0%
! ATAAGAGACTGGTTGGATAA+TGG + chr4_2:56961090-56961109 None:intergenic 35.0%
AAAAGTGGATACAAAGGACA+TGG + chr4_2:56961116-56961135 None:intergenic 35.0%
! TGCTGGATTTTCATGCAAAT+TGG - chr4_2:56961155-56961174 Msa0609630:intron 35.0%
! GCTGGATTTTCATGCAAATT+GGG - chr4_2:56961156-56961175 Msa0609630:intron 35.0%
TGTAGAAACTCCTGAAAAAG+AGG - chr4_2:56961243-56961262 Msa0609630:intron 35.0%
GATTTGTCTTTCTCAACTGT+TGG + chr4_2:56961385-56961404 None:intergenic 35.0%
! CATGGATTATAAGAATGTCG+TGG - chr4_2:56961432-56961451 Msa0609630:intron 35.0%
ATTGGCAGTTATGGTGATAA+TGG - chr4_2:56961471-56961490 Msa0609630:intron 35.0%
!!! TCACTTTTTTCTTGAACGCA+TGG - chr4_2:56961787-56961806 Msa0609630:CDS 35.0%
TACTTTACCCGTTTGATGTA+CGG - chr4_2:56961839-56961858 Msa0609630:CDS 35.0%
CACAGTGAAAATGTTCAGAT+TGG + chr4_2:56961885-56961904 None:intergenic 35.0%
! CTGAACATTTTCACTGTGTT+TGG - chr4_2:56961887-56961906 Msa0609630:CDS 35.0%
CGGTACTTTATGGATAATCA+CGG - chr4_2:56961915-56961934 Msa0609630:CDS 35.0%
GCTAGCAACTGATTGGATAA+TGG - chr4_2:56959709-56959728 Msa0609630:three_prime_UTR 40.0%
TTTCGGAGGATTTGAATGAC+TGG - chr4_2:56959918-56959937 Msa0609630:three_prime_UTR 40.0%
TTCGGAGGATTTGAATGACT+GGG - chr4_2:56959919-56959938 Msa0609630:three_prime_UTR 40.0%
GTTTGTCTTTGTCCATTGGA+TGG - chr4_2:56960454-56960473 Msa0609630:CDS 40.0%
! ATCTCATGGTAGTGAAGTCT+TGG - chr4_2:56960703-56960722 Msa0609630:intron 40.0%
! AAGCAACTGAAAAGCGTGAA+TGG + chr4_2:56960795-56960814 None:intergenic 40.0%
TATGTTTGGGTCACAAGCAA+TGG + chr4_2:56961005-56961024 None:intergenic 40.0%
TTGCTTGTGACCCAAACATA+TGG - chr4_2:56961005-56961024 Msa0609630:CDS 40.0%
ATGGAAGATAAGAGACTGGT+TGG + chr4_2:56961097-56961116 None:intergenic 40.0%
! TCATGCAAATTGGGTTGCAA+TGG - chr4_2:56961165-56961184 Msa0609630:intron 40.0%
GCAACTGCAGATTCAACAAA+TGG - chr4_2:56961196-56961215 Msa0609630:intron 40.0%
! TCAGGCTTTTCCTCTTTTTC+AGG + chr4_2:56961256-56961275 None:intergenic 40.0%
GAAGCTGACAGTTACTGAAA+TGG - chr4_2:56961324-56961343 Msa0609630:intron 40.0%
AAATCTTCAGCTGATGCTGA+TGG - chr4_2:56961400-56961419 Msa0609630:intron 40.0%
GATTATAAGAATGTCGTGGG+AGG - chr4_2:56961436-56961455 Msa0609630:intron 40.0%
! TTTCATGGGATTGGCAGTTA+TGG - chr4_2:56961462-56961481 Msa0609630:intron 40.0%
! GTTTTGCCTAGTGAGTGTTT+AGG + chr4_2:56961515-56961534 None:intergenic 40.0%
AAAACGACAAGAAAGGTCGA+CGG + chr4_2:56961544-56961563 None:intergenic 40.0%
! TTTTCTTGAACGCATGGCTT+TGG - chr4_2:56961793-56961812 Msa0609630:CDS 40.0%
TTTCTTGAACGCATGGCTTT+GGG - chr4_2:56961794-56961813 Msa0609630:CDS 40.0%
ACTTTACCCGTTTGATGTAC+GGG - chr4_2:56961840-56961859 Msa0609630:CDS 40.0%
TTTCACTGTGTTTGGTACTG+CGG - chr4_2:56961895-56961914 Msa0609630:CDS 40.0%
TTTGGTACTGCGGTACTTTA+TGG - chr4_2:56961905-56961924 Msa0609630:CDS 40.0%
GCTAGCAACTGATTGGATAA+TGG - chr4_2:56959709-56959728 Msa0609630:three_prime_UTR 40.0%
TTTCGGAGGATTTGAATGAC+TGG - chr4_2:56959918-56959937 Msa0609630:three_prime_UTR 40.0%
TTCGGAGGATTTGAATGACT+GGG - chr4_2:56959919-56959938 Msa0609630:three_prime_UTR 40.0%
GTTTGTCTTTGTCCATTGGA+TGG - chr4_2:56960454-56960473 Msa0609630:CDS 40.0%
! ATCTCATGGTAGTGAAGTCT+TGG - chr4_2:56960703-56960722 Msa0609630:intron 40.0%
! AAGCAACTGAAAAGCGTGAA+TGG + chr4_2:56960795-56960814 None:intergenic 40.0%
TATGTTTGGGTCACAAGCAA+TGG + chr4_2:56961005-56961024 None:intergenic 40.0%
TTGCTTGTGACCCAAACATA+TGG - chr4_2:56961005-56961024 Msa0609630:CDS 40.0%
ATGGAAGATAAGAGACTGGT+TGG + chr4_2:56961097-56961116 None:intergenic 40.0%
! TCATGCAAATTGGGTTGCAA+TGG - chr4_2:56961165-56961184 Msa0609630:intron 40.0%
GCAACTGCAGATTCAACAAA+TGG - chr4_2:56961196-56961215 Msa0609630:intron 40.0%
! TCAGGCTTTTCCTCTTTTTC+AGG + chr4_2:56961256-56961275 None:intergenic 40.0%
GAAGCTGACAGTTACTGAAA+TGG - chr4_2:56961324-56961343 Msa0609630:intron 40.0%
AAATCTTCAGCTGATGCTGA+TGG - chr4_2:56961400-56961419 Msa0609630:intron 40.0%
GATTATAAGAATGTCGTGGG+AGG - chr4_2:56961436-56961455 Msa0609630:intron 40.0%
! TTTCATGGGATTGGCAGTTA+TGG - chr4_2:56961462-56961481 Msa0609630:intron 40.0%
! GTTTTGCCTAGTGAGTGTTT+AGG + chr4_2:56961515-56961534 None:intergenic 40.0%
AAAACGACAAGAAAGGTCGA+CGG + chr4_2:56961544-56961563 None:intergenic 40.0%
! TTTTCTTGAACGCATGGCTT+TGG - chr4_2:56961793-56961812 Msa0609630:CDS 40.0%
TTTCTTGAACGCATGGCTTT+GGG - chr4_2:56961794-56961813 Msa0609630:CDS 40.0%
ACTTTACCCGTTTGATGTAC+GGG - chr4_2:56961840-56961859 Msa0609630:CDS 40.0%
TTTCACTGTGTTTGGTACTG+CGG - chr4_2:56961895-56961914 Msa0609630:CDS 40.0%
TTTGGTACTGCGGTACTTTA+TGG - chr4_2:56961905-56961924 Msa0609630:CDS 40.0%
!! GCAACTGATTGGATAATGGG+CGG - chr4_2:56959713-56959732 Msa0609630:three_prime_UTR 45.0%
ACCTCTCCAAACACCATTCT+CGG + chr4_2:56959992-56960011 None:intergenic 45.0%
TATGTGGGTTCAGAGTCTGT+TGG - chr4_2:56960389-56960408 Msa0609630:CDS 45.0%
CAGATCCAAGATAATCCACC+AGG + chr4_2:56960597-56960616 None:intergenic 45.0%
ACAAGACAATCCTTGGGAGA+AGG + chr4_2:56960737-56960756 None:intergenic 45.0%
! TCCCAAGGATTGTCTTGTTG+AGG - chr4_2:56960739-56960758 Msa0609630:intron 45.0%
GCCTCAACAAGACAATCCTT+GGG + chr4_2:56960743-56960762 None:intergenic 45.0%
AGCCTCAACAAGACAATCCT+TGG + chr4_2:56960744-56960763 None:intergenic 45.0%
AAAGCGTGAATGGCATGCTT+AGG + chr4_2:56960785-56960804 None:intergenic 45.0%
! GTTGCTTAGCTCAAGTGTTG+AGG - chr4_2:56960808-56960827 Msa0609630:intron 45.0%
!! CAATGGATTGCACAACAGTC+TGG + chr4_2:56960988-56961007 None:intergenic 45.0%
TCGAAGAAACTAGTCACTGC+AGG + chr4_2:56961049-56961068 None:intergenic 45.0%
TTCTTCGAATCACAGCTTGC+AGG - chr4_2:56961061-56961080 Msa0609630:intron 45.0%
GGACATGGAAGATAAGAGAC+TGG + chr4_2:56961101-56961120 None:intergenic 45.0%
!!! ACAAATGGTGCTGCTTTTGC+TGG - chr4_2:56961211-56961230 Msa0609630:intron 45.0%
ACATTTCCTGACTGAGACTC+AGG + chr4_2:56961274-56961293 None:intergenic 45.0%
AGAGAGCCTAAACACTCACT+AGG - chr4_2:56961506-56961525 Msa0609630:intron 45.0%
GAAATGGAGTCTTCATGCAC+AGG - chr4_2:56961686-56961705 Msa0609630:CDS 45.0%
ACATTGGCCCGTACATCAAA+CGG + chr4_2:56961850-56961869 None:intergenic 45.0%
TTGGTCCATGACGAACACAT+TGG + chr4_2:56961866-56961885 None:intergenic 45.0%
!! GCAACTGATTGGATAATGGG+CGG - chr4_2:56959713-56959732 Msa0609630:three_prime_UTR 45.0%
ACCTCTCCAAACACCATTCT+CGG + chr4_2:56959992-56960011 None:intergenic 45.0%
TATGTGGGTTCAGAGTCTGT+TGG - chr4_2:56960389-56960408 Msa0609630:CDS 45.0%
CAGATCCAAGATAATCCACC+AGG + chr4_2:56960597-56960616 None:intergenic 45.0%
ACAAGACAATCCTTGGGAGA+AGG + chr4_2:56960737-56960756 None:intergenic 45.0%
! TCCCAAGGATTGTCTTGTTG+AGG - chr4_2:56960739-56960758 Msa0609630:intron 45.0%
GCCTCAACAAGACAATCCTT+GGG + chr4_2:56960743-56960762 None:intergenic 45.0%
AGCCTCAACAAGACAATCCT+TGG + chr4_2:56960744-56960763 None:intergenic 45.0%
AAAGCGTGAATGGCATGCTT+AGG + chr4_2:56960785-56960804 None:intergenic 45.0%
! GTTGCTTAGCTCAAGTGTTG+AGG - chr4_2:56960808-56960827 Msa0609630:intron 45.0%
!! CAATGGATTGCACAACAGTC+TGG + chr4_2:56960988-56961007 None:intergenic 45.0%
TCGAAGAAACTAGTCACTGC+AGG + chr4_2:56961049-56961068 None:intergenic 45.0%
TTCTTCGAATCACAGCTTGC+AGG - chr4_2:56961061-56961080 Msa0609630:intron 45.0%
GGACATGGAAGATAAGAGAC+TGG + chr4_2:56961101-56961120 None:intergenic 45.0%
!!! ACAAATGGTGCTGCTTTTGC+TGG - chr4_2:56961211-56961230 Msa0609630:intron 45.0%
ACATTTCCTGACTGAGACTC+AGG + chr4_2:56961274-56961293 None:intergenic 45.0%
AGAGAGCCTAAACACTCACT+AGG - chr4_2:56961506-56961525 Msa0609630:intron 45.0%
GAAATGGAGTCTTCATGCAC+AGG - chr4_2:56961686-56961705 Msa0609630:CDS 45.0%
ACATTGGCCCGTACATCAAA+CGG + chr4_2:56961850-56961869 None:intergenic 45.0%
TTGGTCCATGACGAACACAT+TGG + chr4_2:56961866-56961885 None:intergenic 45.0%
!! TAATAAATAATATAGTATAA+TGG + chr4_2:56960171-56960190 None:intergenic 5.0%
!! TAATAAATAATATAGTATAA+TGG + chr4_2:56960171-56960190 None:intergenic 5.0%
!! ACTGATTGGATAATGGGCGG+TGG - chr4_2:56959716-56959735 Msa0609630:three_prime_UTR 50.0%
AACCACGGTTACGTATCCTG+CGG - chr4_2:56959802-56959821 Msa0609630:three_prime_UTR 50.0%
CGTATCCTGCGGAGAAACAA+TGG - chr4_2:56959813-56959832 Msa0609630:three_prime_UTR 50.0%
CTGCGGAGAAACAATGGTCT+CGG - chr4_2:56959819-56959838 Msa0609630:three_prime_UTR 50.0%
CCCTGAGATAAAACCCTCGT+CGG + chr4_2:56959860-56959879 None:intergenic 50.0%
!! CCGACGAGGGTTTTATCTCA+GGG - chr4_2:56959857-56959876 Msa0609630:three_prime_UTR 50.0%
!! CGACGAGGGTTTTATCTCAG+GGG - chr4_2:56959858-56959877 Msa0609630:three_prime_UTR 50.0%
TGGGTTCAGAGTCTGTTGGA+CGG - chr4_2:56960393-56960412 Msa0609630:CDS 50.0%
GAAAAGCCTGAGTCTCAGTC+AGG - chr4_2:56961265-56961284 Msa0609630:intron 50.0%
TCTTCAGCTGATGCTGATGG+AGG - chr4_2:56961403-56961422 Msa0609630:intron 50.0%
TGCTGATGGAGGCAGTTTCA+TGG - chr4_2:56961414-56961433 Msa0609630:intron 50.0%
TGTCGTGGGAGGAAGTTTCA+TGG - chr4_2:56961447-56961466 Msa0609630:intron 50.0%
GTCGTGGGAGGAAGTTTCAT+GGG - chr4_2:56961448-56961467 Msa0609630:intron 50.0%
GGGAGGAAGTTTCATGGGAT+TGG - chr4_2:56961453-56961472 Msa0609630:intron 50.0%
TGGAGTCTTCATGCACAGGT+CGG - chr4_2:56961690-56961709 Msa0609630:CDS 50.0%
!! GGCTTTGGGAAAGTGTGGAT+TGG - chr4_2:56961808-56961827 Msa0609630:intron 50.0%
CATTGGCCCGTACATCAAAC+GGG + chr4_2:56961849-56961868 None:intergenic 50.0%
!! ACTGATTGGATAATGGGCGG+TGG - chr4_2:56959716-56959735 Msa0609630:three_prime_UTR 50.0%
AACCACGGTTACGTATCCTG+CGG - chr4_2:56959802-56959821 Msa0609630:three_prime_UTR 50.0%
CGTATCCTGCGGAGAAACAA+TGG - chr4_2:56959813-56959832 Msa0609630:three_prime_UTR 50.0%
CTGCGGAGAAACAATGGTCT+CGG - chr4_2:56959819-56959838 Msa0609630:three_prime_UTR 50.0%
CCCTGAGATAAAACCCTCGT+CGG + chr4_2:56959860-56959879 None:intergenic 50.0%
!! CCGACGAGGGTTTTATCTCA+GGG - chr4_2:56959857-56959876 Msa0609630:three_prime_UTR 50.0%
!! CGACGAGGGTTTTATCTCAG+GGG - chr4_2:56959858-56959877 Msa0609630:three_prime_UTR 50.0%
TGGGTTCAGAGTCTGTTGGA+CGG - chr4_2:56960393-56960412 Msa0609630:CDS 50.0%
GAAAAGCCTGAGTCTCAGTC+AGG - chr4_2:56961265-56961284 Msa0609630:intron 50.0%
TCTTCAGCTGATGCTGATGG+AGG - chr4_2:56961403-56961422 Msa0609630:intron 50.0%
TGCTGATGGAGGCAGTTTCA+TGG - chr4_2:56961414-56961433 Msa0609630:intron 50.0%
TGTCGTGGGAGGAAGTTTCA+TGG - chr4_2:56961447-56961466 Msa0609630:intron 50.0%
GTCGTGGGAGGAAGTTTCAT+GGG - chr4_2:56961448-56961467 Msa0609630:intron 50.0%
GGGAGGAAGTTTCATGGGAT+TGG - chr4_2:56961453-56961472 Msa0609630:intron 50.0%
TGGAGTCTTCATGCACAGGT+CGG - chr4_2:56961690-56961709 Msa0609630:CDS 50.0%
!! GGCTTTGGGAAAGTGTGGAT+TGG - chr4_2:56961808-56961827 Msa0609630:intron 50.0%
CATTGGCCCGTACATCAAAC+GGG + chr4_2:56961849-56961868 None:intergenic 50.0%
!! GATTGGATAATGGGCGGTGG+CGG - chr4_2:56959719-56959738 Msa0609630:three_prime_UTR 55.0%
! CGAGACCATTGTTTCTCCGC+AGG + chr4_2:56959821-56959840 None:intergenic 55.0%
TAAAACCCTCGTCGGCGATG+AGG + chr4_2:56959852-56959871 None:intergenic 55.0%
!! GCCGACGAGGGTTTTATCTC+AGG - chr4_2:56959856-56959875 Msa0609630:three_prime_UTR 55.0%
ATCTCAGGGGACCAAAACCG+CGG - chr4_2:56959871-56959890 Msa0609630:three_prime_UTR 55.0%
CCAAACACCATTCTCGGCGT+AGG + chr4_2:56959986-56960005 None:intergenic 55.0%
CCTACGCCGAGAATGGTGTT+TGG - chr4_2:56959983-56960002 Msa0609630:three_prime_UTR 55.0%
GCCGAGAATGGTGTTTGGAG+AGG - chr4_2:56959988-56960007 Msa0609630:three_prime_UTR 55.0%
TGGAGAGGTTCCGACGTTGA+AGG - chr4_2:56960003-56960022 Msa0609630:three_prime_UTR 55.0%
GGTTCCGACGTTGAAGGAAG+CGG - chr4_2:56960009-56960028 Msa0609630:three_prime_UTR 55.0%
TCCTCCGCTTCCTTCAACGT+CGG + chr4_2:56960016-56960035 None:intergenic 55.0%
GGGTTCAGAGTCTGTTGGAC+GGG - chr4_2:56960394-56960413 Msa0609630:CDS 55.0%
GGTTCTGTCTCCTTCTCCCA+AGG - chr4_2:56960724-56960743 Msa0609630:intron 55.0%
!! ATGGCATGCTTAGGCACCGA+AGG + chr4_2:56960776-56960795 None:intergenic 55.0%
!! TAGCTCAAGTGTTGAGGCCC+AGG - chr4_2:56960814-56960833 Msa0609630:intron 55.0%
!!! GGTGCTGCTTTTGCTGGTTC+TGG - chr4_2:56961217-56961236 Msa0609630:intron 55.0%
!! CGCATGGCTTTGGGAAAGTG+TGG - chr4_2:56961803-56961822 Msa0609630:intron 55.0%
ACGGGCCAATGTGTTCGTCA+TGG - chr4_2:56961858-56961877 Msa0609630:CDS 55.0%
!! GATTGGATAATGGGCGGTGG+CGG - chr4_2:56959719-56959738 Msa0609630:three_prime_UTR 55.0%
! CGAGACCATTGTTTCTCCGC+AGG + chr4_2:56959821-56959840 None:intergenic 55.0%
TAAAACCCTCGTCGGCGATG+AGG + chr4_2:56959852-56959871 None:intergenic 55.0%
!! GCCGACGAGGGTTTTATCTC+AGG - chr4_2:56959856-56959875 Msa0609630:three_prime_UTR 55.0%
ATCTCAGGGGACCAAAACCG+CGG - chr4_2:56959871-56959890 Msa0609630:three_prime_UTR 55.0%
CCAAACACCATTCTCGGCGT+AGG + chr4_2:56959986-56960005 None:intergenic 55.0%
CCTACGCCGAGAATGGTGTT+TGG - chr4_2:56959983-56960002 Msa0609630:three_prime_UTR 55.0%
GCCGAGAATGGTGTTTGGAG+AGG - chr4_2:56959988-56960007 Msa0609630:three_prime_UTR 55.0%
TGGAGAGGTTCCGACGTTGA+AGG - chr4_2:56960003-56960022 Msa0609630:three_prime_UTR 55.0%
GGTTCCGACGTTGAAGGAAG+CGG - chr4_2:56960009-56960028 Msa0609630:three_prime_UTR 55.0%
TCCTCCGCTTCCTTCAACGT+CGG + chr4_2:56960016-56960035 None:intergenic 55.0%
GGGTTCAGAGTCTGTTGGAC+GGG - chr4_2:56960394-56960413 Msa0609630:CDS 55.0%
GGTTCTGTCTCCTTCTCCCA+AGG - chr4_2:56960724-56960743 Msa0609630:intron 55.0%
!! ATGGCATGCTTAGGCACCGA+AGG + chr4_2:56960776-56960795 None:intergenic 55.0%
!! TAGCTCAAGTGTTGAGGCCC+AGG - chr4_2:56960814-56960833 Msa0609630:intron 55.0%
!!! GGTGCTGCTTTTGCTGGTTC+TGG - chr4_2:56961217-56961236 Msa0609630:intron 55.0%
!! CGCATGGCTTTGGGAAAGTG+TGG - chr4_2:56961803-56961822 Msa0609630:intron 55.0%
ACGGGCCAATGTGTTCGTCA+TGG - chr4_2:56961858-56961877 Msa0609630:CDS 55.0%
CGTCGCTAGGTCAGGCTTCA+GGG - chr4_2:56959778-56959797 Msa0609630:three_prime_UTR 60.0%
GTCGCTAGGTCAGGCTTCAG+GGG - chr4_2:56959779-56959798 Msa0609630:three_prime_UTR 60.0%
GTCAGGCTTCAGGGGAACCA+CGG - chr4_2:56959787-56959806 Msa0609630:three_prime_UTR 60.0%
CTCCGCAGGATACGTAACCG+TGG + chr4_2:56959807-56959826 None:intergenic 60.0%
! AGGCTTCACGTCCGCGGTTT+TGG + chr4_2:56959885-56959904 None:intergenic 60.0%
CGTGAAGCCTCTGCACACGT+CGG - chr4_2:56959895-56959914 Msa0609630:three_prime_UTR 60.0%
!! GCCTCTGCACACGTCGGTTT+CGG - chr4_2:56959901-56959920 Msa0609630:three_prime_UTR 60.0%
TCCGAAACCGACGTGTGCAG+AGG + chr4_2:56959905-56959924 None:intergenic 60.0%
!! TCTGCACACGTCGGTTTCGG+AGG - chr4_2:56959904-56959923 Msa0609630:three_prime_UTR 60.0%
TGGAGAGCCTACGCCGAGAA+TGG - chr4_2:56959976-56959995 Msa0609630:three_prime_UTR 60.0%
TCCGACGTTGAAGGAAGCGG+AGG - chr4_2:56960012-56960031 Msa0609630:three_prime_UTR 60.0%
GAAGGAAGCGGAGGAAGCCA+CGG - chr4_2:56960021-56960040 Msa0609630:three_prime_UTR 60.0%
CGCGTGCTTCAATTCAGCCG+TGG + chr4_2:56960041-56960060 None:intergenic 60.0%
CGTCGCTAGGTCAGGCTTCA+GGG - chr4_2:56959778-56959797 Msa0609630:three_prime_UTR 60.0%
GTCGCTAGGTCAGGCTTCAG+GGG - chr4_2:56959779-56959798 Msa0609630:three_prime_UTR 60.0%
GTCAGGCTTCAGGGGAACCA+CGG - chr4_2:56959787-56959806 Msa0609630:three_prime_UTR 60.0%
CTCCGCAGGATACGTAACCG+TGG + chr4_2:56959807-56959826 None:intergenic 60.0%
! AGGCTTCACGTCCGCGGTTT+TGG + chr4_2:56959885-56959904 None:intergenic 60.0%
CGTGAAGCCTCTGCACACGT+CGG - chr4_2:56959895-56959914 Msa0609630:three_prime_UTR 60.0%
!! GCCTCTGCACACGTCGGTTT+CGG - chr4_2:56959901-56959920 Msa0609630:three_prime_UTR 60.0%
TCCGAAACCGACGTGTGCAG+AGG + chr4_2:56959905-56959924 None:intergenic 60.0%
!! TCTGCACACGTCGGTTTCGG+AGG - chr4_2:56959904-56959923 Msa0609630:three_prime_UTR 60.0%
TGGAGAGCCTACGCCGAGAA+TGG - chr4_2:56959976-56959995 Msa0609630:three_prime_UTR 60.0%
TCCGACGTTGAAGGAAGCGG+AGG - chr4_2:56960012-56960031 Msa0609630:three_prime_UTR 60.0%
GAAGGAAGCGGAGGAAGCCA+CGG - chr4_2:56960021-56960040 Msa0609630:three_prime_UTR 60.0%
CGCGTGCTTCAATTCAGCCG+TGG + chr4_2:56960041-56960060 None:intergenic 60.0%
!! CGGTGGCGGAACGATGAGGA+CGG - chr4_2:56959733-56959752 Msa0609630:three_prime_UTR 65.0%
TGACCTAGCGACGCCGATGC+CGG + chr4_2:56959771-56959790 None:intergenic 65.0%
GCGTCGCTAGGTCAGGCTTC+AGG - chr4_2:56959777-56959796 Msa0609630:three_prime_UTR 65.0%
GTGCAGAGGCTTCACGTCCG+CGG + chr4_2:56959891-56959910 None:intergenic 65.0%
!! CGGTGGCGGAACGATGAGGA+CGG - chr4_2:56959733-56959752 Msa0609630:three_prime_UTR 65.0%
TGACCTAGCGACGCCGATGC+CGG + chr4_2:56959771-56959790 None:intergenic 65.0%
GCGTCGCTAGGTCAGGCTTC+AGG - chr4_2:56959777-56959796 Msa0609630:three_prime_UTR 65.0%
GTGCAGAGGCTTCACGTCCG+CGG + chr4_2:56959891-56959910 None:intergenic 65.0%
!! TGGGCGGTGGCGGAACGATG+AGG - chr4_2:56959729-56959748 Msa0609630:three_prime_UTR 70.0%
AGGACGGCAGCCAAGCTCGC+CGG - chr4_2:56959749-56959768 Msa0609630:three_prime_UTR 70.0%
GCAGCCAAGCTCGCCGGCAT+CGG - chr4_2:56959755-56959774 Msa0609630:three_prime_UTR 70.0%
!! GGCATCGGCGTCGCTAGGTC+AGG - chr4_2:56959770-56959789 Msa0609630:three_prime_UTR 70.0%
!! TGGGCGGTGGCGGAACGATG+AGG - chr4_2:56959729-56959748 Msa0609630:three_prime_UTR 70.0%
AGGACGGCAGCCAAGCTCGC+CGG - chr4_2:56959749-56959768 Msa0609630:three_prime_UTR 70.0%
GCAGCCAAGCTCGCCGGCAT+CGG - chr4_2:56959755-56959774 Msa0609630:three_prime_UTR 70.0%
!! GGCATCGGCGTCGCTAGGTC+AGG - chr4_2:56959770-56959789 Msa0609630:three_prime_UTR 70.0%
GACGCCGATGCCGGCGAGCT+TGG + chr4_2:56959762-56959781 None:intergenic 75.0%
!! TCGCCGGCATCGGCGTCGCT+AGG - chr4_2:56959765-56959784 Msa0609630:three_prime_UTR 75.0%
ACCGCGCCTCATCGCCGACG+AGG - chr4_2:56959843-56959862 Msa0609630:three_prime_UTR 75.0%
CCCTCGTCGGCGATGAGGCG+CGG + chr4_2:56959847-56959866 None:intergenic 75.0%
CCGCGCCTCATCGCCGACGA+GGG - chr4_2:56959844-56959863 Msa0609630:three_prime_UTR 75.0%
GACGCCGATGCCGGCGAGCT+TGG + chr4_2:56959762-56959781 None:intergenic 75.0%
!! TCGCCGGCATCGGCGTCGCT+AGG - chr4_2:56959765-56959784 Msa0609630:three_prime_UTR 75.0%
ACCGCGCCTCATCGCCGACG+AGG - chr4_2:56959843-56959862 Msa0609630:three_prime_UTR 75.0%
CCCTCGTCGGCGATGAGGCG+CGG + chr4_2:56959847-56959866 None:intergenic 75.0%
CCGCGCCTCATCGCCGACGA+GGG - chr4_2:56959844-56959863 Msa0609630:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 56959705 56961986 56959705 ID=Msa0609630;Name=Msa0609630
chr4_2 mRNA 56959705 56961986 56959705 ID=Msa0609630-mRNA-1;Parent=Msa0609630;Name=Msa0609630-mRNA-1;_AED=0.11;_eAED=0.11;_QI=23|0.75|0.6|1|0.5|0.6|5|470|301
chr4_2 exon 56959705 56960485 56959705 ID=Msa0609630-mRNA-1:exon:14786;Parent=Msa0609630-mRNA-1
chr4_2 exon 56960609 56960702 56960609 ID=Msa0609630-mRNA-1:exon:14785;Parent=Msa0609630-mRNA-1
chr4_2 exon 56960856 56961027 56960856 ID=Msa0609630-mRNA-1:exon:14784;Parent=Msa0609630-mRNA-1
chr4_2 exon 56961623 56961813 56961623 ID=Msa0609630-mRNA-1:exon:14783;Parent=Msa0609630-mRNA-1
chr4_2 exon 56961826 56961986 56961826 ID=Msa0609630-mRNA-1:exon:14782;Parent=Msa0609630-mRNA-1
chr4_2 five_prime_UTR 56961964 56961986 56961964 ID=Msa0609630-mRNA-1:five_prime_utr;Parent=Msa0609630-mRNA-1
chr4_2 CDS 56961826 56961963 56961826 ID=Msa0609630-mRNA-1:cds;Parent=Msa0609630-mRNA-1
chr4_2 CDS 56961623 56961813 56961623 ID=Msa0609630-mRNA-1:cds;Parent=Msa0609630-mRNA-1
chr4_2 CDS 56960856 56961027 56960856 ID=Msa0609630-mRNA-1:cds;Parent=Msa0609630-mRNA-1
chr4_2 CDS 56960609 56960702 56960609 ID=Msa0609630-mRNA-1:cds;Parent=Msa0609630-mRNA-1
chr4_2 CDS 56960175 56960485 56960175 ID=Msa0609630-mRNA-1:cds;Parent=Msa0609630-mRNA-1
chr4_2 three_prime_UTR 56959705 56960174 56959705 ID=Msa0609630-mRNA-1:three_prime_utr;Parent=Msa0609630-mRNA-1
Gene Sequence

>Msa0609630

ATGGGCGGTGGCGGAACGATGAGGACGGCAGCCAAGCTCGCCGGCATCGGCGTCGCTAGGTCAGGCTTCAGGGGAACCACGGTTACGTATCCTGCGGAGAAACAATGGTCTCGGAACCGCGCCTCATCGCCGACGAGGGGGACCAAAACCGCGGACGTGAAGCCTCTGCACACGTCGGTTTCGGAGGATTTGAATGACTGGGAATTCGCCGATGAAAGTGATTTGTTTATGTCGAGTGGAGAGCCTACGCCGAGAATGGTGTTTGGAGAGGTTCCGACGTTGAAGGAAGCGGAGGAAGCCACGGCTGAATTGAAGCACGCGATTGATCAAATTTACCTTTCACCTGCTAATTCTCAAATTGAGAACTCATCTCATGGTAGTGAAGTCTTGGTTCTGTCTCCTTCTCCCAAGGATTGTCTTGTTGAGGCTATTTCAAATCCTTCGGTGCCTAAGCATGCCATTCACGCTTTTCAGTTGCTTAGCTCAAGTGTTGAGGCCCAGACTGTTGTGCAATCCATTGCTTGTGACCCAAACATATGGAATGCTGTCATGCAAAATCCTGCAGTGACTAGTTTCTTCGAATCACAGCTTGCAGATTCAACAAATGGTGCTGCTTTTGCTGGTTCTGGATTTGTAGAAACTCCTGAAAAAGAGGAAAAGCCTGAGTCTCAGTCAGGAAATGTTTTTGATTTTATGGGTATTCTGCAGAATTTGAAGCTGACAGTTACTGAAATGGTAAGTAGAATGTCCAATTTCTTTCAAAACATATTCCCAACAGTTGAGAAAGACAAATCTTCAGCTGATGCTGATGGAGGCAGTTTCATGGATTATAAGAATGTCGTGGGAGGAAGTTTCATGGGATTGGCAGTTATGGTGATAATGGTTGTACTGATGAAGAGAGCCTAA
Protein sequence

>Msa0609630

MGGGGTMRTAAKLAGIGVARSGFRGTTVTYPAEKQWSRNRASSPTRGTKTADVKPLHTSVSEDLNDWEFADESDLFMSSGEPTPRMVFGEVPTLKEAEEATAELKHAIDQIYLSPANSQIENSSHGSEVLVLSPSPKDCLVEAISNPSVPKHAIHAFQLLSSSVEAQTVVQSIACDPNIWNAVMQNPAVTSFFESQLADSTNGAAFAGSGFVETPEKEEKPESQSGNVFDFMGILQNLKLTVTEMVSRMSNFFQNIFPTVEKDKSSADADGGSFMDYKNVVGGSFMGLAVMVIMVVLMKRA*