AlfalfaGEDB | Msa1252070

M. sativa cultivar zhongmu-4 / Msa1252070

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1252070	XP_003628947.1	92.049	327	19	2	1	326	1	321	0.0	574

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1252070	G7LJC7	92.049	327	19	2	1	326	1	321	0.0	574

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001000	Msa1252070	0.825246	5.203990e-54	-8.615850e-47
Msa0006700	Msa1252070	0.844475	7.386630e-59	-8.615850e-47
Msa0008850	Msa1252070	0.833500	5.147470e-56	-8.615850e-47
Msa0011720	Msa1252070	0.852825	3.580774e-61	-8.615850e-47
Msa0014410	Msa1252070	0.820726	5.889415e-53	-8.615850e-47
Msa0020630	Msa1252070	0.818471	1.926587e-52	-8.615850e-47
Msa0037820	Msa1252070	0.817557	3.100203e-52	-8.615850e-47
Msa0038310	Msa1252070	0.810076	1.379918e-50	-8.615850e-47
Msa0044710	Msa1252070	0.836049	1.175172e-56	-8.615850e-47
Msa0047470	Msa1252070	0.858377	8.587901e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1252070	MtrunA17_Chr8g0367981	92.049	327	19	2	1	326	1	321	0.0	574

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1252070	AT3G26580.1	56.410	351	127	5	1	326	1	350	1.58e-128	371

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Find 105 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCGGAGCAGAATGGAG+TGG	0.664807	8_2:+48831336	Msa1252070:CDS
AAAGAGCAATGCAATCCTTA+TGG	0.434951	8_2:-48833345	None:intergenic
AAATTAGAATCGTCATAAAT+TGG	0.310654	8_2:-48836431	None:intergenic
AACGCATAGCTACAACAGCA+AGG	0.589818	8_2:-48831268	None:intergenic
AAGAGAAGAGGATGAGAGTT+AGG	0.351749	8_2:+48831524	Msa1252070:CDS
AAGAGAGTGAGGAAGAGAAG+AGG	0.534892	8_2:+48831512	Msa1252070:CDS
AAGTCAAACTCGGAGCAGAA+TGG	0.574039	8_2:+48831331	Msa1252070:CDS
AATTATTGTATGTCACAAAT+AGG	0.362264	8_2:+48836503	Msa1252070:three_prime_UTR
ACCAACTAATACCAACCATA+TGG	0.521837	8_2:-48836353	None:intergenic
ACCATATGGTTGGTATTAGT+TGG	0.445104	8_2:+48836352	Msa1252070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAATGTTGAAAAGGAAG+AGG	-	chr8_2:48831093-48831112	None:intergenic	30.0%
AACTATTACATATGAGACAG+AGG	-	chr8_2:48831645-48831664	None:intergenic	30.0%
TGCTTATAATTGAGACTAGA+GGG	-	chr8_2:48832313-48832332	None:intergenic	30.0%
TTGCTTATAATTGAGACTAG+AGG	-	chr8_2:48832314-48832333	None:intergenic	30.0%
TGTCAGTTGTCTAATGATAA+AGG	-	chr8_2:48832642-48832661	None:intergenic	30.0%
CTAGAAGTGAAACATTAAGA+TGG	+	chr8_2:48832681-48832700	Msa1252070:intron	30.0%
TGGTGCATAATAACTATTCT+TGG	+	chr8_2:48832718-48832737	Msa1252070:intron	30.0%
GATTTAGGTAAGAAAGCTTA+CGG	+	chr8_2:48833074-48833093	Msa1252070:CDS	30.0%
ATTTAGGTAAGAAAGCTTAC+GGG	+	chr8_2:48833075-48833094	Msa1252070:CDS	30.0%
TAATGTAGATCTTGGTATGA+TGG	-	chr8_2:48833147-48833166	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	48830984	48836667	48830984	ID=Msa1252070;Name=Msa1252070
chr8_2	mRNA	48830984	48836667	48830984	ID=Msa1252070-mRNA-1;Parent=Msa1252070;Name=Msa1252070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=155\|1\|1\|1\|1\|1\|4\|268\|326
chr8_2	exon	48830984	48831561	48830984	ID=Msa1252070-mRNA-1:exon:14705;Parent=Msa1252070-mRNA-1
chr8_2	exon	48833026	48833178	48833026	ID=Msa1252070-mRNA-1:exon:14706;Parent=Msa1252070-mRNA-1
chr8_2	exon	48833304	48833509	48833304	ID=Msa1252070-mRNA-1:exon:14707;Parent=Msa1252070-mRNA-1
chr8_2	exon	48836201	48836667	48836201	ID=Msa1252070-mRNA-1:exon:14708;Parent=Msa1252070-mRNA-1
chr8_2	five_prime_UTR	48830984	48831138	48830984	ID=Msa1252070-mRNA-1:five_prime_utr;Parent=Msa1252070-mRNA-1
chr8_2	CDS	48831139	48831561	48831139	ID=Msa1252070-mRNA-1:cds;Parent=Msa1252070-mRNA-1
chr8_2	CDS	48833026	48833178	48833026	ID=Msa1252070-mRNA-1:cds;Parent=Msa1252070-mRNA-1
chr8_2	CDS	48833304	48833509	48833304	ID=Msa1252070-mRNA-1:cds;Parent=Msa1252070-mRNA-1
chr8_2	CDS	48836201	48836399	48836201	ID=Msa1252070-mRNA-1:cds;Parent=Msa1252070-mRNA-1
chr8_2	three_prime_UTR	48836400	48836667	48836400	ID=Msa1252070-mRNA-1:three_prime_utr;Parent=Msa1252070-mRNA-1

Gene Sequence

>Msa1252070

ATGGCTGTAAGCTTAGGAAACCTAACCTTACTCCTCGACATATCTTCACCACGAAGCTTAACTCTCGACAGAAAACCTCTTCTCACGTTACCTCTCAAGAGAGACTCATCTTCTTCTTCAACTTCATCCCCTTGCTGTTGTAGCTATGCGTTTGAGGGGGAGGGGCGTGGACGAGTGGTGGTGGCACGTGGGAAGTCAAACTCGGAGCAGAATGGAGTGGACTTTGACTCGGAGAGTGATGAGGAAGGAGGGTTAGGGGATGGAGATGATTTTGAAACGAAGATAAGGAGAAGAGTAAAGGAGTTTGAAGAGAGGAGAGAGCTTGAGAAGAAAGCTGAAGAGTATTTGGAGAGTAAGGGTGATGATGGTGAGGAAGAGAGTGAGGAAGAGAAGAGGATGAGAGTTAGGAAAGAGCTTGAAAAGGTGGCTAAGGAGCAGGCAGAGAGGAGGGCCACAGCTCAGTTGATGTATGATTTAGGTAAGAAAGCTTACGGGAGAGGCACGTACGGACGTGCTGTTGAGTTTCTTGAAGGTGCACTCACCATCATACCAAGATCTACATTATTTGGTGGTGAGATACAAATATGGCTGGCTATGGCTTATGAGGCCAATAATCGCCATAAGGATTGCATTGCTCTTTACAAGCAATTAGAAAAGTCGCACCCTAGTATTAGCATCAAACGTCAAGCTGCAGAACTTCGTTACATTTTGGAAGCACCAAAGCTCAAGATAACCCAAGAAGAGATGGTGACTATACCCTTGATTGGTTCCAGTTATGACAGTTATGCGGGAACATGGAGCGATAAAAACAAGGATCGAAAGAGTGGAACAGTCAACAGTCCATTTCCATCATCTAAAGATAACTTTTTGGACTTGCTTGTATGGAGACCTCCTGCTGGATTAGGGAAAAATCGAGCTTTCTGGGTTGGTTTGACCATATGGTTGGTATTAGTTGGTGCTGCTCTCTACATTCAAAGATGA

Protein sequence

>Msa1252070

MAVSLGNLTLLLDISSPRSLTLDRKPLLTLPLKRDSSSSSTSSPCCCSYAFEGEGRGRVVVARGKSNSEQNGVDFDSESDEEGGLGDGDDFETKIRRRVKEFEERRELEKKAEEYLESKGDDGEEESEEEKRMRVRKELEKVAKEQAERRATAQLMYDLGKKAYGRGTYGRAVEFLEGALTIIPRSTLFGGEIQIWLAMAYEANNRHKDCIALYKQLEKSHPSISIKRQAAELRYILEAPKLKITQEEMVTIPLIGSSYDSYAGTWSDKNKDRKSGTVNSPFPSSKDNFLDLLVWRPPAGLGKNRAFWVGLTIWLVLVGAALYIQR*