Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857030 | XP_003616443.2 | 97.566 | 493 | 12 | 0 | 1 | 493 | 1 | 493 | 0.0 | 985 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857030 | sp|Q9CAY3|GPAT5_ARATH | 73.577 | 492 | 126 | 3 | 3 | 492 | 12 | 501 | 0.0 | 752 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857030 | G7KGS4 | 97.566 | 493 | 12 | 0 | 1 | 493 | 1 | 493 | 0.0 | 985 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612350 | Msa0857030 | 0.802733 | 4.876052e-49 | -8.615850e-47 |
| Msa0737690 | Msa0857030 | 0.989360 | 8.710917e-178 | -8.615850e-47 |
| Msa0816830 | Msa0857030 | 0.898231 | 6.495365e-77 | -8.615850e-47 |
| Msa0818720 | Msa0857030 | 0.827077 | 1.909295e-54 | -8.615850e-47 |
| Msa0818760 | Msa0857030 | 0.831412 | 1.693985e-55 | -8.615850e-47 |
| Msa0827870 | Msa0857030 | 0.828657 | 7.960345e-55 | -8.615850e-47 |
| Msa0389460 | Msa0857030 | 0.829423 | 5.191410e-55 | -8.615850e-47 |
| Msa0457060 | Msa0857030 | 0.804307 | 2.299979e-49 | -8.615850e-47 |
| Msa0857030 | Msa1170890 | 0.823132 | 1.632484e-53 | -8.615850e-47 |
| Msa0857030 | Msa1321010 | 0.814977 | 1.170436e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857030 | MtrunA17_Chr5g0435581 | 97.566 | 493 | 12 | 0 | 1 | 493 | 1 | 493 | 0.0 | 985 |
| Msa0857030 | MtrunA17_Chr1g0170421 | 51.992 | 477 | 216 | 5 | 3 | 472 | 56 | 526 | 7.89e-168 | 487 |
| Msa0857030 | MtrunA17_Chr7g0241831 | 51.477 | 474 | 221 | 3 | 2 | 472 | 24 | 491 | 4.81e-163 | 471 |
| Msa0857030 | MtrunA17_Chr4g0005991 | 50.837 | 478 | 225 | 4 | 2 | 475 | 21 | 492 | 2.25e-159 | 461 |
| Msa0857030 | MtrunA17_Chr8g0348781 | 47.170 | 477 | 242 | 5 | 2 | 473 | 27 | 498 | 1.14e-146 | 429 |
| Msa0857030 | MtrunA17_Chr5g0443341 | 45.094 | 479 | 249 | 6 | 2 | 476 | 65 | 533 | 8.33e-141 | 416 |
| Msa0857030 | MtrunA17_Chr3g0096481 | 43.958 | 480 | 246 | 9 | 2 | 472 | 60 | 525 | 4.33e-131 | 390 |
| Msa0857030 | MtrunA17_Chr5g0425071 | 40.461 | 477 | 267 | 8 | 3 | 473 | 17 | 482 | 4.28e-118 | 355 |
| Msa0857030 | MtrunA17_Chr1g0194391 | 41.164 | 481 | 256 | 12 | 3 | 472 | 65 | 529 | 9.47e-116 | 351 |
| Msa0857030 | MtrunA17_Chr3g0096591 | 54.044 | 272 | 110 | 6 | 209 | 472 | 7 | 271 | 1.70e-91 | 280 |
| Msa0857030 | MtrunA17_Chr3g0096581 | 32.447 | 188 | 117 | 4 | 2 | 188 | 64 | 242 | 1.50e-27 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857030 | AT3G11430.1 | 73.577 | 492 | 126 | 3 | 3 | 492 | 12 | 501 | 0.0 | 752 |
| Msa0857030 | AT5G06090.1 | 72.358 | 492 | 132 | 3 | 3 | 492 | 10 | 499 | 0.0 | 718 |
| Msa0857030 | AT2G38110.1 | 48.109 | 476 | 235 | 3 | 3 | 472 | 25 | 494 | 1.50e-146 | 429 |
| Msa0857030 | AT4G00400.1 | 46.751 | 477 | 244 | 6 | 2 | 473 | 22 | 493 | 1.70e-140 | 414 |
| Msa0857030 | AT1G01610.1 | 47.699 | 478 | 239 | 7 | 2 | 473 | 22 | 494 | 1.53e-138 | 409 |
| Msa0857030 | AT1G06520.1 | 43.548 | 496 | 240 | 11 | 2 | 472 | 104 | 584 | 3.21e-133 | 398 |
| Msa0857030 | AT3G11325.2 | 60.345 | 290 | 82 | 1 | 201 | 490 | 134 | 390 | 2.67e-117 | 350 |
| Msa0857030 | AT3G11325.2 | 57.143 | 105 | 45 | 0 | 12 | 116 | 9 | 113 | 5.74e-34 | 132 |
| Msa0857030 | AT3G11325.1 | 60.345 | 290 | 82 | 1 | 201 | 490 | 131 | 387 | 3.69e-117 | 350 |
| Msa0857030 | AT3G11325.1 | 57.143 | 105 | 45 | 0 | 12 | 116 | 6 | 110 | 5.96e-34 | 132 |
| Msa0857030 | AT1G02390.1 | 41.988 | 493 | 246 | 15 | 3 | 472 | 52 | 527 | 7.03e-112 | 341 |
| Msa0857030 | AT4G01950.1 | 41.322 | 484 | 258 | 14 | 3 | 472 | 46 | 517 | 1.37e-108 | 332 |
| Msa0857030 | AT4G01950.2 | 41.513 | 489 | 250 | 15 | 3 | 472 | 74 | 545 | 6.56e-108 | 332 |
Find 150 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCACATGTCAAGATTATT+TGG | 0.150256 | 5_4:-52193995 | Msa0857030:CDS |
| CAATATCCTTTGAACATAAT+TGG | 0.202872 | 5_4:+52193454 | None:intergenic |
| AGATCATCCATGAAGAATTT+TGG | 0.219011 | 5_4:+52195558 | None:intergenic |
| GCTGGCTATCATTGTGCTTT+TGG | 0.221316 | 5_4:+52194173 | None:intergenic |
| TTACGTGCAGATGAAGTAAT+TGG | 0.248051 | 5_4:-52195438 | Msa0857030:CDS |
| TTACTCGAAAAGATAAATAT+AGG | 0.294416 | 5_4:-52193400 | Msa0857030:CDS |
| CAATTATGTTCAAAGGATAT+TGG | 0.310416 | 5_4:-52193453 | Msa0857030:CDS |
| TCCCAAGGTTAATCTGATTA+TGG | 0.312514 | 5_4:+52194042 | None:intergenic |
| ATACTCTATTTCTCGGTTAT+CGG | 0.316529 | 5_4:-52193831 | Msa0857030:CDS |
| ATAGAGCACTAAATCGTAAA+AGG | 0.319770 | 5_4:+52193678 | None:intergenic |
| TTATAGTACCTGGCAAAGTT+TGG | 0.321027 | 5_4:+52195254 | None:intergenic |
| TCGCGACATGTCGTTCCTTC+TGG | 0.322328 | 5_4:+52193707 | None:intergenic |
| AAAAGATAAATATAGGGTTT+TGG | 0.322909 | 5_4:-52193393 | Msa0857030:CDS |
| CCGCCTGCGGAGGGAGGGAG+AGG | 0.341597 | 5_4:+52193944 | None:intergenic |
| CCTCCCTACTAATCATCCTT+TGG | 0.351925 | 5_4:-52194087 | Msa0857030:CDS |
| TACTCGAAAAGATAAATATA+GGG | 0.353770 | 5_4:-52193399 | Msa0857030:CDS |
| CCTCCCTCCGCAGGCGGCCC+CGG | 0.355972 | 5_4:-52193938 | Msa0857030:CDS |
| AACAAATGCAACCACCATTT+AGG | 0.356648 | 5_4:-52194201 | Msa0857030:CDS |
| TGCAAGGGGTTGGAAGGGTT+TGG | 0.357093 | 5_4:-52193585 | Msa0857030:CDS |
| AATCTCAGATTTATGAATTC+CGG | 0.371744 | 5_4:+52195605 | None:intergenic |
| CATCGTGTCTTGTACTTCAT+TGG | 0.372552 | 5_4:-52193357 | Msa0857030:CDS |
| ATGATTAGTAGGGAGGTTAA+TGG | 0.373547 | 5_4:+52194094 | None:intergenic |
| CCATACCCAACTTTGGAACT+TGG | 0.375224 | 5_4:+52195316 | None:intergenic |
| GTGTACTCACCGCACTCTAA+TGG | 0.376230 | 5_4:-52193903 | Msa0857030:CDS |
| TAATCCTATGGCCCGTGATT+CGG | 0.383281 | 5_4:-52195689 | Msa0857030:CDS |
| ACAGAATATTGTTCATCTAA+TGG | 0.385742 | 5_4:-52195823 | Msa0857030:exon |
| TACTTTCTTGAACCAGTTGC+CGG | 0.390520 | 5_4:-52193519 | Msa0857030:CDS |
| CTTCATGTTAGTAGCGTTTG+AGG | 0.391660 | 5_4:-52195742 | Msa0857030:CDS |
| AATAGGTTTGGTTTAGCTAC+AGG | 0.398808 | 5_4:-52195399 | Msa0857030:CDS |
| GACGAACATGTGGCTTCAAC+CGG | 0.402068 | 5_4:+52193500 | None:intergenic |
| ATGTGAGGAATGGCCCAAAA+AGG | 0.402197 | 5_4:+52194010 | None:intergenic |
| GTTAGTCTCACGGTAGGAAT+GGG | 0.403818 | 5_4:+52193797 | None:intergenic |
| GTAACCTCATAAACTGGTCT+TGG | 0.404829 | 5_4:+52193539 | None:intergenic |
| CCGGATGAGGTCGGAGAAGC+TGG | 0.406448 | 5_4:+52194155 | None:intergenic |
| AATAACCAAGTTCCAAAGTT+GGG | 0.409025 | 5_4:-52195321 | Msa0857030:CDS |
| TTCTTTCTCCAAACTTTGCC+AGG | 0.409775 | 5_4:-52195262 | Msa0857030:intron |
| ACAAACAACTAAATCTCCTT+TGG | 0.410080 | 5_4:+52193730 | None:intergenic |
| AGGATATTGGCTGCAACTCT+AGG | 0.410254 | 5_4:-52193440 | Msa0857030:CDS |
| AAGAAAGTAACCTCATAAAC+TGG | 0.410853 | 5_4:+52193533 | None:intergenic |
| TGAAGTAATTGGGAGTGAAT+TGG | 0.411804 | 5_4:-52195427 | Msa0857030:CDS |
| AGCGTCCACATTTCGCATCC+TGG | 0.432122 | 5_4:+52193775 | None:intergenic |
| CGGGGCCGCCTGCGGAGGGA+GGG | 0.433345 | 5_4:+52193939 | None:intergenic |
| CCGGGGCCGCCTGCGGAGGG+AGG | 0.436986 | 5_4:+52193938 | None:intergenic |
| GAATCCAAAGGATGATTAGT+AGG | 0.437047 | 5_4:+52194083 | None:intergenic |
| GGGTTCATGAAGAAGAAAAC+CGG | 0.438572 | 5_4:+52193560 | None:intergenic |
| TATGGCTAGTAATATACCTA+TGG | 0.440019 | 5_4:+52194060 | None:intergenic |
| GGTTAGTCTCACGGTAGGAA+TGG | 0.440830 | 5_4:+52193796 | None:intergenic |
| AGCCTTGCCATACCCAACTT+TGG | 0.442432 | 5_4:+52195309 | None:intergenic |
| CAATAACCAAGTTCCAAAGT+TGG | 0.452601 | 5_4:-52195322 | Msa0857030:CDS |
| TAACCTCATAAACTGGTCTT+GGG | 0.452875 | 5_4:+52193540 | None:intergenic |
| CGGTAACATACTCTATTTCT+CGG | 0.456428 | 5_4:-52193838 | Msa0857030:CDS |
| CACATCGTGTGGACTCTTCC+CGG | 0.458052 | 5_4:+52193478 | None:intergenic |
| TTAGTAGCGTTTGAGGCCTC+AGG | 0.458129 | 5_4:-52195735 | Msa0857030:CDS |
| GAACCCAAGACCAGTTTATG+AGG | 0.459966 | 5_4:-52193543 | Msa0857030:CDS |
| ATGTGGCTTCAACCGGCAAC+TGG | 0.460408 | 5_4:+52193507 | None:intergenic |
| ACACCGGGGCCGCCTGCGGA+GGG | 0.460445 | 5_4:+52193935 | None:intergenic |
| CGGCCGTCGTGGAAGATAAC+CGG | 0.466207 | 5_4:+52194136 | None:intergenic |
| GAACCCTACTCTATAGTTCA+TGG | 0.467040 | 5_4:+52193622 | None:intergenic |
| GTTGAAGCCACATGTTCGTC+CGG | 0.467761 | 5_4:-52193497 | Msa0857030:CDS |
| TCGTTCTGCTATTAATCCTA+TGG | 0.468159 | 5_4:-52195701 | Msa0857030:CDS |
| ATTGGTTGATCAAGTAAAGA+AGG | 0.479552 | 5_4:-52193339 | Msa0857030:CDS |
| GATTTAGTTGTTTGTCCAGA+AGG | 0.481237 | 5_4:-52193722 | Msa0857030:CDS |
| GTGTAGGCCGCTTCACCAAT+CGG | 0.482482 | 5_4:+52194116 | None:intergenic |
| ACTCTATAGTTCATGGCAAC+CGG | 0.483007 | 5_4:+52193629 | None:intergenic |
| CCAGCTTCTCCGACCTCATC+CGG | 0.484716 | 5_4:-52194155 | Msa0857030:CDS |
| AGATTTATGAATTCCGGCTA+TGG | 0.486205 | 5_4:+52195611 | None:intergenic |
| AACCCCTTGCAGTGGTTGCA+TGG | 0.489933 | 5_4:+52193597 | None:intergenic |
| TACGTGCAGATGAAGTAATT+GGG | 0.490722 | 5_4:-52195437 | Msa0857030:CDS |
| CCACCTCTCCCTCCCTCCGC+AGG | 0.490767 | 5_4:-52193947 | Msa0857030:CDS |
| CTCTTATGAGAAAAGGGTTG+TGG | 0.493027 | 5_4:-52195508 | Msa0857030:CDS |
| AACACCGGGGCCGCCTGCGG+AGG | 0.495682 | 5_4:+52193934 | None:intergenic |
| TCAGTTGTCTCTGAATTAGA+AGG | 0.500272 | 5_4:-52195798 | Msa0857030:CDS |
| CCTCCATGCCGAACATGTCT+AGG | 0.500915 | 5_4:+52195664 | None:intergenic |
| TTTAGCAACTCTTTCAGAAA+CGG | 0.500932 | 5_4:+52195350 | None:intergenic |
| GGGTTGGAAGGGTTTGGACC+CGG | 0.513399 | 5_4:-52193579 | Msa0857030:CDS |
| GGTGGCAAAGTTATTGTGAA+GGG | 0.518531 | 5_4:-52193974 | Msa0857030:CDS |
| ATTCGGTTCCTAGACATGTT+CGG | 0.519097 | 5_4:-52195672 | Msa0857030:CDS |
| TATCTTCCACGACGGCCGAT+TGG | 0.522796 | 5_4:-52194131 | Msa0857030:CDS |
| AACCACTGCAAGGGGTTGGA+AGG | 0.523750 | 5_4:-52193591 | Msa0857030:CDS |
| CCAAGTTCCAAAGTTGGGTA+TGG | 0.524716 | 5_4:-52195316 | Msa0857030:CDS |
| TATGGTGAAGAGGTTTGTTG+AGG | 0.528470 | 5_4:-52195466 | Msa0857030:CDS |
| AGCCATAATCAGATTAACCT+TGG | 0.529275 | 5_4:-52194044 | Msa0857030:CDS |
| GCCATAATCAGATTAACCTT+GGG | 0.530102 | 5_4:-52194043 | Msa0857030:CDS |
| CTTCCATGCAACCACTGCAA+GGG | 0.532313 | 5_4:-52193600 | Msa0857030:CDS |
| ATGCAACCACTGCAAGGGGT+TGG | 0.533517 | 5_4:-52193595 | Msa0857030:CDS |
| GGATATTGGCTGCAACTCTA+GGG | 0.537098 | 5_4:-52193439 | Msa0857030:CDS |
| CCTGCGGAGGGAGGGAGAGG+TGG | 0.537490 | 5_4:+52193947 | None:intergenic |
| AACCTCTTCACCATAACTCC+TGG | 0.538516 | 5_4:+52195474 | None:intergenic |
| ATGATCTTCGTAGCCATAGC+CGG | 0.545870 | 5_4:-52195624 | Msa0857030:CDS |
| GAAATAGAGTATGTTACCGC+TGG | 0.548665 | 5_4:+52193842 | None:intergenic |
| TGGTGGCAAAGTTATTGTGA+AGG | 0.548955 | 5_4:-52193975 | Msa0857030:CDS |
| AAACGCTACTAACATGAAGT+AGG | 0.553250 | 5_4:+52195746 | None:intergenic |
| ACCACTGCAAGGGGTTGGAA+GGG | 0.554018 | 5_4:-52193590 | Msa0857030:CDS |
| ACATAATTGGCCACATCGTG+TGG | 0.555416 | 5_4:+52193467 | None:intergenic |
| TCGCATCCTGGTTAGTCTCA+CGG | 0.556814 | 5_4:+52193787 | None:intergenic |
| ACGACGGCCGATTGGTGAAG+CGG | 0.557445 | 5_4:-52194123 | Msa0857030:CDS |
| ATGTAAGGGTGCAAGTGTGC+TGG | 0.558445 | 5_4:-52193228 | Msa0857030:three_prime_UTR |
| TTCCATGCAACCACTGCAAG+GGG | 0.559446 | 5_4:-52193599 | Msa0857030:CDS |
| CACATGTCAAGATTATTTGG+TGG | 0.561180 | 5_4:-52193992 | Msa0857030:CDS |
| GCACTAAATCGTAAAAGGAA+AGG | 0.562800 | 5_4:+52193683 | None:intergenic |
| TAATCTTGACATGTGAGGAA+TGG | 0.563106 | 5_4:+52194000 | None:intergenic |
| ATGTCTAGGAACCGAATCAC+GGG | 0.563811 | 5_4:+52195678 | None:intergenic |
| ATGTGGCCAATTATGTTCAA+AGG | 0.565821 | 5_4:-52193460 | Msa0857030:CDS |
| ATCATCCTTTGGATTCCCAT+AGG | 0.567783 | 5_4:-52194076 | Msa0857030:CDS |
| TGCCAGGAGTTATGGTGAAG+AGG | 0.568451 | 5_4:-52195476 | Msa0857030:CDS |
| ACCCTTCCAACCCCTTGCAG+TGG | 0.568618 | 5_4:+52193589 | None:intergenic |
| AAAAGGTAAAATGGCTCCCA+AGG | 0.569333 | 5_4:+52194027 | None:intergenic |
| GGAAGATAACCGGATGAGGT+CGG | 0.569958 | 5_4:+52194146 | None:intergenic |
| GTTCCTAGACATGTTCGGCA+TGG | 0.571934 | 5_4:-52195667 | Msa0857030:CDS |
| ATGATCTTGACATGGAAGCT+TGG | 0.575350 | 5_4:-52195542 | Msa0857030:CDS |
| TTGAAGCCACATGTTCGTCC+GGG | 0.575686 | 5_4:-52193496 | Msa0857030:CDS |
| TTCCAAAGTTGGGTATGGCA+AGG | 0.576401 | 5_4:-52195311 | Msa0857030:CDS |
| ATGGCTAGTAATATACCTAT+GGG | 0.576541 | 5_4:+52194061 | None:intergenic |
| TTGCCATGAACTATAGAGTA+GGG | 0.580288 | 5_4:-52193625 | Msa0857030:CDS |
| CTTCATGGATGATCTTGACA+TGG | 0.581073 | 5_4:-52195550 | Msa0857030:CDS |
| TCTTCCATGCAACCACTGCA+AGG | 0.581170 | 5_4:-52193601 | Msa0857030:CDS |
| AGTAGGGAGGTTAATGGTGT+AGG | 0.581490 | 5_4:+52194100 | None:intergenic |
| AAGAACACCGGGGCCGCCTG+CGG | 0.582203 | 5_4:+52193931 | None:intergenic |
| TACGTTGGAGGACGGAAGAG+AGG | 0.586719 | 5_4:+52193870 | None:intergenic |
| AGGACGGAAGAGAGGACCAC+AGG | 0.587085 | 5_4:+52193878 | None:intergenic |
| GGAACCGAATCACGGGCCAT+AGG | 0.587795 | 5_4:+52195685 | None:intergenic |
| ATAAAATATGAGTTATCCAA+AGG | 0.588127 | 5_4:-52193746 | Msa0857030:CDS |
| TCGTGGAAGATAACCGGATG+AGG | 0.592639 | 5_4:+52194142 | None:intergenic |
| AATCCAAAGGATGATTAGTA+GGG | 0.594053 | 5_4:+52194084 | None:intergenic |
| ACTAACCAGGATGCGAAATG+TGG | 0.596166 | 5_4:-52193780 | Msa0857030:CDS |
| ACTCTTCCCGGACGAACATG+TGG | 0.597450 | 5_4:+52193490 | None:intergenic |
| GCTTCACCAATCGGCCGTCG+TGG | 0.597938 | 5_4:+52194125 | None:intergenic |
| TTAGTCTCACGGTAGGAATG+GGG | 0.605101 | 5_4:+52193798 | None:intergenic |
| CCTCTCCCTCCCTCCGCAGG+CGG | 0.606101 | 5_4:-52193944 | Msa0857030:CDS |
| CCAAATAATCTTGACATGTG+AGG | 0.613846 | 5_4:+52193995 | None:intergenic |
| CATGTCTAGGAACCGAATCA+CGG | 0.613979 | 5_4:+52195677 | None:intergenic |
| CCAAAGGATGATTAGTAGGG+AGG | 0.617133 | 5_4:+52194087 | None:intergenic |
| TAGTCTCACGGTAGGAATGG+GGG | 0.621006 | 5_4:+52193799 | None:intergenic |
| GATCATTATTATGGTAAACA+AGG | 0.622764 | 5_4:+52193299 | None:intergenic |
| ACTCACAGATCGGATAGTAC+CGG | 0.630574 | 5_4:-52193648 | Msa0857030:CDS |
| GGACGGAAGAGAGGACCACA+GGG | 0.633576 | 5_4:+52193879 | None:intergenic |
| TTCCTACCGTGAGACTAACC+AGG | 0.633579 | 5_4:-52193793 | Msa0857030:CDS |
| GTTGCCATGAACTATAGAGT+AGG | 0.638820 | 5_4:-52193626 | Msa0857030:CDS |
| CGGGAAGAGTCCACACGATG+TGG | 0.640851 | 5_4:-52193477 | Msa0857030:CDS |
| CCTAGACATGTTCGGCATGG+AGG | 0.648261 | 5_4:-52195664 | Msa0857030:CDS |
| GGTTCATGAAGAAGAAAACC+GGG | 0.655673 | 5_4:+52193561 | None:intergenic |
| TATTTGCAGAACTCACAGAT+CGG | 0.656460 | 5_4:-52193658 | Msa0857030:CDS |
| CATCCGGTTATCTTCCACGA+CGG | 0.663414 | 5_4:-52194139 | Msa0857030:CDS |
| ATATACCTATGGGAATCCAA+AGG | 0.666680 | 5_4:+52194071 | None:intergenic |
| GGTTGATCAAGTAAAGAAGG+TGG | 0.673976 | 5_4:-52193336 | Msa0857030:CDS |
| ATCCTGGTTAGTCTCACGGT+AGG | 0.682353 | 5_4:+52193791 | None:intergenic |
| AACGAAGCGAATCAAACCTG+AGG | 0.685586 | 5_4:+52195719 | None:intergenic |
| CCACAGGGTCCATTAGAGTG+CGG | 0.712721 | 5_4:+52193894 | None:intergenic |
| CCTCCAACGTAAAACTCCAG+CGG | 0.722705 | 5_4:-52193858 | Msa0857030:CDS |
| CCGCACTCTAATGGACCCTG+TGG | 0.755400 | 5_4:-52193894 | Msa0857030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTTTTTTTTTTATTAG+TGG | - | chr5_4:52194281-52194300 | Msa0857030:intron | 10.0% |
| !!! | TATTTCAACGAATAATTTTT+TGG | - | chr5_4:52193824-52193843 | Msa0857030:CDS | 15.0% |
| !! | GAAACATATTTAAAAAAAGA+CGG | + | chr5_4:52193911-52193930 | None:intergenic | 15.0% |
| !! | AATAGATTAAAAAGAATACA+CGG | + | chr5_4:52194376-52194395 | None:intergenic | 15.0% |
| !!! | TTCTGTTTCTTTAATTTTTT+CGG | - | chr5_4:52195829-52195848 | Msa0857030:five_prime_UTR | 15.0% |
| !! | GTTAAATAAATTATAGTACC+TGG | + | chr5_4:52193749-52193768 | None:intergenic | 20.0% |
| !! | AATGAATGAAAAATTCGATT+TGG | - | chr5_4:52193785-52193804 | Msa0857030:CDS | 20.0% |
| !!! | TTTTTCTCAAAATTGTCATT+TGG | - | chr5_4:52193876-52193895 | Msa0857030:CDS | 20.0% |
| !!! | ATTGTATACGAACAAATTTT+GGG | + | chr5_4:52194000-52194019 | None:intergenic | 20.0% |
| !!! | AATTGTATACGAACAAATTT+TGG | + | chr5_4:52194001-52194020 | None:intergenic | 20.0% |
| !!! | AGAAACAAAATTTTATTCCA+AGG | - | chr5_4:52194169-52194188 | Msa0857030:CDS | 20.0% |
| !! | ATAGATTAAAAAGAATACAC+GGG | + | chr5_4:52194375-52194394 | None:intergenic | 20.0% |
| !! | TAAATAGACTCGAAAATTAT+GGG | + | chr5_4:52194471-52194490 | None:intergenic | 20.0% |
| !! | CTTATAAGAAACAACAAAAT+TGG | + | chr5_4:52194547-52194566 | None:intergenic | 20.0% |
| !! | ATAAAATATGAGTTATCCAA+AGG | - | chr5_4:52195244-52195263 | Msa0857030:intron | 20.0% |
| !! | TTACTCGAAAAGATAAATAT+AGG | - | chr5_4:52195590-52195609 | Msa0857030:CDS | 20.0% |
| !! | TACTCGAAAAGATAAATATA+GGG | - | chr5_4:52195591-52195610 | Msa0857030:CDS | 20.0% |
| !!! | AAAAGATAAATATAGGGTTT+TGG | - | chr5_4:52195597-52195616 | Msa0857030:CDS | 20.0% |
| !!! | ATTTTGTACGATCATTATTA+TGG | + | chr5_4:52195703-52195722 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTGTATGTATGTA+AGG | - | chr5_4:52195747-52195766 | Msa0857030:CDS | 20.0% |
| !!! | TTTTGTTTGTATGTATGTAA+GGG | - | chr5_4:52195748-52195767 | Msa0857030:CDS | 20.0% |
| !!! | TCTGTTTCTTTAATTTTTTC+GGG | - | chr5_4:52195830-52195849 | Msa0857030:five_prime_UTR | 20.0% |
| ! | ACAGAATATTGTTCATCTAA+TGG | - | chr5_4:52193167-52193186 | Msa0857030:three_prime_UTR | 25.0% |
| ! | AATCTCAGATTTATGAATTC+CGG | + | chr5_4:52193388-52193407 | None:intergenic | 25.0% |
| !!! | TTTTTAGCTCTTATGAGAAA+AGG | - | chr5_4:52193475-52193494 | Msa0857030:CDS | 25.0% |
| !!! | TTTTAGCTCTTATGAGAAAA+GGG | - | chr5_4:52193476-52193495 | Msa0857030:CDS | 25.0% |
| !!! | TTTGCCTTTACTTTTATGTT+CGG | - | chr5_4:52194021-52194040 | Msa0857030:CDS | 25.0% |
| ! | TTAAGTGTAAGTATTCCAAA+AGG | - | chr5_4:52194096-52194115 | Msa0857030:CDS | 25.0% |
| ! | TAAGTGTAAGTATTCCAAAA+GGG | - | chr5_4:52194097-52194116 | Msa0857030:CDS | 25.0% |
| ! | ACAACTATAAGCCATATTAT+AGG | + | chr5_4:52194130-52194149 | None:intergenic | 25.0% |
| ! | TAATATGGCTTATAGTTGTT+TGG | - | chr5_4:52194131-52194150 | Msa0857030:CDS | 25.0% |
| !!! | TATGGGTTAAATACGTTTTT+TGG | + | chr5_4:52194454-52194473 | None:intergenic | 25.0% |
| ! | GTAAATAGACTCGAAAATTA+TGG | + | chr5_4:52194472-52194491 | None:intergenic | 25.0% |
| !!! | ACAAGATTTTGATACTAAAC+AGG | + | chr5_4:52194494-52194513 | None:intergenic | 25.0% |
| ! | CAATATCCTTTGAACATAAT+TGG | + | chr5_4:52195539-52195558 | None:intergenic | 25.0% |
| ! | CAATTATGTTCAAAGGATAT+TGG | - | chr5_4:52195537-52195556 | Msa0857030:CDS | 25.0% |
| ! | GATCATTATTATGGTAAACA+AGG | + | chr5_4:52195694-52195713 | None:intergenic | 25.0% |
| !!! | CTGTTTCTTTAATTTTTTCG+GGG | - | chr5_4:52195831-52195850 | Msa0857030:five_prime_UTR | 25.0% |
| ! | AGTTTTGCCAAAATTCTTCA+TGG | - | chr5_4:52193425-52193444 | Msa0857030:CDS | 30.0% |
| ! | AGATCATCCATGAAGAATTT+TGG | + | chr5_4:52193435-52193454 | None:intergenic | 30.0% |
| !!! | GAATTGGTTTTCAATAGGTT+TGG | - | chr5_4:52193579-52193598 | Msa0857030:CDS | 30.0% |
| TTTAGCAACTCTTTCAGAAA+CGG | + | chr5_4:52193643-52193662 | None:intergenic | 30.0% | |
| AATAACCAAGTTCCAAAGTT+GGG | - | chr5_4:52193669-52193688 | Msa0857030:CDS | 30.0% | |
| TTCATTGCAATTTCTCACTT+TGG | + | chr5_4:52193771-52193790 | None:intergenic | 30.0% | |
| ATGACCGAACATAAAAGTAA+AGG | + | chr5_4:52194028-52194047 | None:intergenic | 30.0% | |
| AATCCAAAGGATGATTAGTA+GGG | + | chr5_4:52194909-52194928 | None:intergenic | 30.0% | |
| ATGGCTAGTAATATACCTAT+GGG | + | chr5_4:52194932-52194951 | None:intergenic | 30.0% | |
| TATGGCTAGTAATATACCTA+TGG | + | chr5_4:52194933-52194952 | None:intergenic | 30.0% | |
| ! | ATACTCTATTTCTCGGTTAT+CGG | - | chr5_4:52195159-52195178 | Msa0857030:intron | 30.0% |
| ACAAACAACTAAATCTCCTT+TGG | + | chr5_4:52195263-52195282 | None:intergenic | 30.0% | |
| ! | ATAGAGCACTAAATCGTAAA+AGG | + | chr5_4:52195315-52195334 | None:intergenic | 30.0% |
| AAGAAAGTAACCTCATAAAC+TGG | + | chr5_4:52195460-52195479 | None:intergenic | 30.0% | |
| !!! | ATAAATATAGGGTTTTGGCT+GGG | - | chr5_4:52195602-52195621 | Msa0857030:CDS | 30.0% |
| ATTGGTTGATCAAGTAAAGA+AGG | - | chr5_4:52195651-52195670 | Msa0857030:CDS | 30.0% | |
| TCAGTTGTCTCTGAATTAGA+AGG | - | chr5_4:52193192-52193211 | Msa0857030:three_prime_UTR | 35.0% | |
| AAACGCTACTAACATGAAGT+AGG | + | chr5_4:52193247-52193266 | None:intergenic | 35.0% | |
| TCGTTCTGCTATTAATCCTA+TGG | - | chr5_4:52193289-52193308 | Msa0857030:exon | 35.0% | |
| AGATTTATGAATTCCGGCTA+TGG | + | chr5_4:52193382-52193401 | None:intergenic | 35.0% | |
| AACAAAAATGCCAGGAGTTA+TGG | - | chr5_4:52193506-52193525 | Msa0857030:CDS | 35.0% | |
| TTACGTGCAGATGAAGTAAT+TGG | - | chr5_4:52193552-52193571 | Msa0857030:CDS | 35.0% | |
| TACGTGCAGATGAAGTAATT+GGG | - | chr5_4:52193553-52193572 | Msa0857030:CDS | 35.0% | |
| TGAAGTAATTGGGAGTGAAT+TGG | - | chr5_4:52193563-52193582 | Msa0857030:CDS | 35.0% | |
| !!! | GGAGTGAATTGGTTTTCAAT+AGG | - | chr5_4:52193574-52193593 | Msa0857030:CDS | 35.0% |
| ! | AATAGGTTTGGTTTAGCTAC+AGG | - | chr5_4:52193591-52193610 | Msa0857030:CDS | 35.0% |
| CAATAACCAAGTTCCAAAGT+TGG | - | chr5_4:52193668-52193687 | Msa0857030:CDS | 35.0% | |
| TTATAGTACCTGGCAAAGTT+TGG | + | chr5_4:52193739-52193758 | None:intergenic | 35.0% | |
| ! | TTATAGGAAGTTCACCCTTT+TGG | + | chr5_4:52194114-52194133 | None:intergenic | 35.0% |
| AGGGTGAACTTCCTATAATA+TGG | - | chr5_4:52194116-52194135 | Msa0857030:CDS | 35.0% | |
| !! | TTATAGTTGTTTGGTGCTTG+TGG | - | chr5_4:52194140-52194159 | Msa0857030:CDS | 35.0% |
| CTCAGATAAAGACTCTTTCA+CGG | - | chr5_4:52194221-52194240 | Msa0857030:intron | 35.0% | |
| TCAGATAAAGACTCTTTCAC+GGG | - | chr5_4:52194222-52194241 | Msa0857030:intron | 35.0% | |
| ! | GGTTGGTTCATAAATACGAT+GGG | - | chr5_4:52194244-52194263 | Msa0857030:intron | 35.0% |
| ! | GTTGGTTCATAAATACGATG+GGG | - | chr5_4:52194245-52194264 | Msa0857030:intron | 35.0% |
| TTGGTTCATAAATACGATGG+GGG | - | chr5_4:52194246-52194265 | Msa0857030:intron | 35.0% | |
| ! | GACATATTTTGTATGTGTGC+AGG | - | chr5_4:52194766-52194785 | Msa0857030:intron | 35.0% |
| AACAAATGCAACCACCATTT+AGG | - | chr5_4:52194789-52194808 | Msa0857030:intron | 35.0% | |
| ATGATTAGTAGGGAGGTTAA+TGG | + | chr5_4:52194899-52194918 | None:intergenic | 35.0% | |
| GAATCCAAAGGATGATTAGT+AGG | + | chr5_4:52194910-52194929 | None:intergenic | 35.0% | |
| ATATACCTATGGGAATCCAA+AGG | + | chr5_4:52194922-52194941 | None:intergenic | 35.0% | |
| AGCCATAATCAGATTAACCT+TGG | - | chr5_4:52194946-52194965 | Msa0857030:intron | 35.0% | |
| GCCATAATCAGATTAACCTT+GGG | - | chr5_4:52194947-52194966 | Msa0857030:intron | 35.0% | |
| TCCCAAGGTTAATCTGATTA+TGG | + | chr5_4:52194951-52194970 | None:intergenic | 35.0% | |
| AATGGCCCAAAAAGGTAAAA+TGG | + | chr5_4:52194975-52194994 | None:intergenic | 35.0% | |
| TAATCTTGACATGTGAGGAA+TGG | + | chr5_4:52194993-52195012 | None:intergenic | 35.0% | |
| CCAAATAATCTTGACATGTG+AGG | + | chr5_4:52194998-52195017 | None:intergenic | 35.0% | |
| CCTCACATGTCAAGATTATT+TGG | - | chr5_4:52194995-52195014 | Msa0857030:intron | 35.0% | |
| CACATGTCAAGATTATTTGG+TGG | - | chr5_4:52194998-52195017 | Msa0857030:intron | 35.0% | |
| AGTACACACAAAAAGAACAC+CGG | + | chr5_4:52195074-52195093 | None:intergenic | 35.0% | |
| ! | CGGTAACATACTCTATTTCT+CGG | - | chr5_4:52195152-52195171 | Msa0857030:intron | 35.0% |
| GATTTAGTTGTTTGTCCAGA+AGG | - | chr5_4:52195268-52195287 | Msa0857030:CDS | 35.0% | |
| GCACTAAATCGTAAAAGGAA+AGG | + | chr5_4:52195310-52195329 | None:intergenic | 35.0% | |
| TATTTGCAGAACTCACAGAT+CGG | - | chr5_4:52195332-52195351 | Msa0857030:CDS | 35.0% | |
| TTGCCATGAACTATAGAGTA+GGG | - | chr5_4:52195365-52195384 | Msa0857030:CDS | 35.0% | |
| !! | TAACCTCATAAACTGGTCTT+GGG | + | chr5_4:52195453-52195472 | None:intergenic | 35.0% |
| ATGTGGCCAATTATGTTCAA+AGG | - | chr5_4:52195530-52195549 | Msa0857030:CDS | 35.0% | |
| !! | GATAAATATAGGGTTTTGGC+TGG | - | chr5_4:52195601-52195620 | Msa0857030:CDS | 35.0% |
| CTTCATGTTAGTAGCGTTTG+AGG | - | chr5_4:52193248-52193267 | Msa0857030:three_prime_UTR | 40.0% | |
| ATTCGGTTCCTAGACATGTT+CGG | - | chr5_4:52193318-52193337 | Msa0857030:CDS | 40.0% | |
| CTTCATGGATGATCTTGACA+TGG | - | chr5_4:52193440-52193459 | Msa0857030:CDS | 40.0% | |
| ATGATCTTGACATGGAAGCT+TGG | - | chr5_4:52193448-52193467 | Msa0857030:CDS | 40.0% | |
| CTCTTATGAGAAAAGGGTTG+TGG | - | chr5_4:52193482-52193501 | Msa0857030:CDS | 40.0% | |
| GTTGTGGTAACAAAAATGCC+AGG | - | chr5_4:52193498-52193517 | Msa0857030:CDS | 40.0% | |
| !! | TATGGTGAAGAGGTTTGTTG+AGG | - | chr5_4:52193524-52193543 | Msa0857030:CDS | 40.0% |
| TTCTTTCTCCAAACTTTGCC+AGG | - | chr5_4:52193728-52193747 | Msa0857030:CDS | 40.0% | |
| TGATGTTTGCATGTTCACCT+TGG | + | chr5_4:52194189-52194208 | None:intergenic | 40.0% | |
| CAGATAAAGACTCTTTCACG+GGG | - | chr5_4:52194223-52194242 | Msa0857030:intron | 40.0% | |
| !! | GGGTTGGTTCATAAATACGA+TGG | - | chr5_4:52194243-52194262 | Msa0857030:intron | 40.0% |
| !!! | TTTTGGCTTGTCCTAAATGG+TGG | + | chr5_4:52194803-52194822 | None:intergenic | 40.0% |
| !!! | TGCTTTTGGCTTGTCCTAAA+TGG | + | chr5_4:52194806-52194825 | None:intergenic | 40.0% |
| ATCATCCTTTGGATTCCCAT+AGG | - | chr5_4:52194914-52194933 | Msa0857030:intron | 40.0% | |
| AAAAGGTAAAATGGCTCCCA+AGG | + | chr5_4:52194966-52194985 | None:intergenic | 40.0% | |
| !! | TGGGAGCCATTTTACCTTTT+TGG | - | chr5_4:52194966-52194985 | Msa0857030:intron | 40.0% |
| !! | GGGAGCCATTTTACCTTTTT+GGG | - | chr5_4:52194967-52194986 | Msa0857030:intron | 40.0% |
| TGGTGGCAAAGTTATTGTGA+AGG | - | chr5_4:52195015-52195034 | Msa0857030:intron | 40.0% | |
| GGTGGCAAAGTTATTGTGAA+GGG | - | chr5_4:52195016-52195035 | Msa0857030:intron | 40.0% | |
| TACACACAAAAAGAACACCG+GGG | + | chr5_4:52195072-52195091 | None:intergenic | 40.0% | |
| GTACACACAAAAAGAACACC+GGG | + | chr5_4:52195073-52195092 | None:intergenic | 40.0% | |
| GAAATAGAGTATGTTACCGC+TGG | + | chr5_4:52195151-52195170 | None:intergenic | 40.0% | |
| ACTCTATAGTTCATGGCAAC+CGG | + | chr5_4:52195364-52195383 | None:intergenic | 40.0% | |
| GTTGCCATGAACTATAGAGT+AGG | - | chr5_4:52195364-52195383 | Msa0857030:CDS | 40.0% | |
| GAACCCTACTCTATAGTTCA+TGG | + | chr5_4:52195371-52195390 | None:intergenic | 40.0% | |
| GGTTCATGAAGAAGAAAACC+GGG | + | chr5_4:52195432-52195451 | None:intergenic | 40.0% | |
| GGGTTCATGAAGAAGAAAAC+CGG | + | chr5_4:52195433-52195452 | None:intergenic | 40.0% | |
| ! | GTAACCTCATAAACTGGTCT+TGG | + | chr5_4:52195454-52195473 | None:intergenic | 40.0% |
| TACTTTCTTGAACCAGTTGC+CGG | - | chr5_4:52195471-52195490 | Msa0857030:CDS | 40.0% | |
| CATCGTGTCTTGTACTTCAT+TGG | - | chr5_4:52195633-52195652 | Msa0857030:CDS | 40.0% | |
| GGTTGATCAAGTAAAGAAGG+TGG | - | chr5_4:52195654-52195673 | Msa0857030:CDS | 40.0% | |
| AACGAAGCGAATCAAACCTG+AGG | + | chr5_4:52193274-52193293 | None:intergenic | 45.0% | |
| TAATCCTATGGCCCGTGATT+CGG | - | chr5_4:52193301-52193320 | Msa0857030:exon | 45.0% | |
| ATGTCTAGGAACCGAATCAC+GGG | + | chr5_4:52193315-52193334 | None:intergenic | 45.0% | |
| CATGTCTAGGAACCGAATCA+CGG | + | chr5_4:52193316-52193335 | None:intergenic | 45.0% | |
| ATGATCTTCGTAGCCATAGC+CGG | - | chr5_4:52193366-52193385 | Msa0857030:CDS | 45.0% | |
| AACCTCTTCACCATAACTCC+TGG | + | chr5_4:52193519-52193538 | None:intergenic | 45.0% | |
| !! | CCATACCCAACTTTGGAACT+TGG | + | chr5_4:52193677-52193696 | None:intergenic | 45.0% |
| CCAAGTTCCAAAGTTGGGTA+TGG | - | chr5_4:52193674-52193693 | Msa0857030:CDS | 45.0% | |
| TTCCAAAGTTGGGTATGGCA+AGG | - | chr5_4:52193679-52193698 | Msa0857030:CDS | 45.0% | |
| TAAAGACTCTTTCACGGGGT+TGG | - | chr5_4:52194227-52194246 | Msa0857030:intron | 45.0% | |
| AAATACGATGGGGGAGAACT+TGG | - | chr5_4:52194255-52194274 | Msa0857030:intron | 45.0% | |
| AATACGATGGGGGAGAACTT+GGG | - | chr5_4:52194256-52194275 | Msa0857030:intron | 45.0% | |
| ! | GCTGGCTATCATTGTGCTTT+TGG | + | chr5_4:52194820-52194839 | None:intergenic | 45.0% |
| AGTAGGGAGGTTAATGGTGT+AGG | + | chr5_4:52194893-52194912 | None:intergenic | 45.0% | |
| CCAAAGGATGATTAGTAGGG+AGG | + | chr5_4:52194906-52194925 | None:intergenic | 45.0% | |
| CCTCCCTACTAATCATCCTT+TGG | - | chr5_4:52194903-52194922 | Msa0857030:intron | 45.0% | |
| ATGTGAGGAATGGCCCAAAA+AGG | + | chr5_4:52194983-52195002 | None:intergenic | 45.0% | |
| ! | TGGAGTTTTACGTTGGAGGA+CGG | + | chr5_4:52195131-52195150 | None:intergenic | 45.0% |
| ! | TTACCGCTGGAGTTTTACGT+TGG | + | chr5_4:52195138-52195157 | None:intergenic | 45.0% |
| TTAGTCTCACGGTAGGAATG+GGG | + | chr5_4:52195195-52195214 | None:intergenic | 45.0% | |
| ! | GTTAGTCTCACGGTAGGAAT+GGG | + | chr5_4:52195196-52195215 | None:intergenic | 45.0% |
| ACTAACCAGGATGCGAAATG+TGG | - | chr5_4:52195210-52195229 | Msa0857030:intron | 45.0% | |
| ACTCACAGATCGGATAGTAC+CGG | - | chr5_4:52195342-52195361 | Msa0857030:CDS | 45.0% | |
| GAACCCAAGACCAGTTTATG+AGG | - | chr5_4:52195447-52195466 | Msa0857030:CDS | 45.0% | |
| ACATAATTGGCCACATCGTG+TGG | + | chr5_4:52195526-52195545 | None:intergenic | 45.0% | |
| ! | AGGATATTGGCTGCAACTCT+AGG | - | chr5_4:52195550-52195569 | Msa0857030:CDS | 45.0% |
| ! | GGATATTGGCTGCAACTCTA+GGG | - | chr5_4:52195551-52195570 | Msa0857030:CDS | 45.0% |
| !! | AATTAATTTACTTTAAATAT+TGG | - | chr5_4:52194721-52194740 | Msa0857030:intron | 5.0% |
| !! | ATTAATTTACTTTAAATATT+GGG | - | chr5_4:52194722-52194741 | Msa0857030:intron | 5.0% |
| ! | TTAGTAGCGTTTGAGGCCTC+AGG | - | chr5_4:52193255-52193274 | Msa0857030:three_prime_UTR | 50.0% |
| GTTCCTAGACATGTTCGGCA+TGG | - | chr5_4:52193323-52193342 | Msa0857030:CDS | 50.0% | |
| TGCCAGGAGTTATGGTGAAG+AGG | - | chr5_4:52193514-52193533 | Msa0857030:CDS | 50.0% | |
| AGCCTTGCCATACCCAACTT+TGG | + | chr5_4:52193684-52193703 | None:intergenic | 50.0% | |
| GGAAGATAACCGGATGAGGT+CGG | + | chr5_4:52194847-52194866 | None:intergenic | 50.0% | |
| TCGTGGAAGATAACCGGATG+AGG | + | chr5_4:52194851-52194870 | None:intergenic | 50.0% | |
| CATCCGGTTATCTTCCACGA+CGG | - | chr5_4:52194851-52194870 | Msa0857030:intron | 50.0% | |
| GTGTACTCACCGCACTCTAA+TGG | - | chr5_4:52195087-52195106 | Msa0857030:intron | 50.0% | |
| CCTCCAACGTAAAACTCCAG+CGG | - | chr5_4:52195132-52195151 | Msa0857030:intron | 50.0% | |
| TAGTCTCACGGTAGGAATGG+GGG | + | chr5_4:52195194-52195213 | None:intergenic | 50.0% | |
| !! | GGTTAGTCTCACGGTAGGAA+TGG | + | chr5_4:52195197-52195216 | None:intergenic | 50.0% |
| TTCCTACCGTGAGACTAACC+AGG | - | chr5_4:52195197-52195216 | Msa0857030:intron | 50.0% | |
| !! | ATCCTGGTTAGTCTCACGGT+AGG | + | chr5_4:52195202-52195221 | None:intergenic | 50.0% |
| !! | TCGCATCCTGGTTAGTCTCA+CGG | + | chr5_4:52195206-52195225 | None:intergenic | 50.0% |
| TCTTCCATGCAACCACTGCA+AGG | - | chr5_4:52195389-52195408 | Msa0857030:CDS | 50.0% | |
| CTTCCATGCAACCACTGCAA+GGG | - | chr5_4:52195390-52195409 | Msa0857030:CDS | 50.0% | |
| TTCCATGCAACCACTGCAAG+GGG | - | chr5_4:52195391-52195410 | Msa0857030:CDS | 50.0% | |
| GACGAACATGTGGCTTCAAC+CGG | + | chr5_4:52195493-52195512 | None:intergenic | 50.0% | |
| GTTGAAGCCACATGTTCGTC+CGG | - | chr5_4:52195493-52195512 | Msa0857030:CDS | 50.0% | |
| TTGAAGCCACATGTTCGTCC+GGG | - | chr5_4:52195494-52195513 | Msa0857030:CDS | 50.0% | |
| !!! | AGGGTTTTGGCTGGGAATGA+TGG | - | chr5_4:52195610-52195629 | Msa0857030:CDS | 50.0% |
| ! | ATGTAAGGGTGCAAGTGTGC+TGG | - | chr5_4:52195762-52195781 | Msa0857030:CDS | 50.0% |
| CCTCCATGCCGAACATGTCT+AGG | + | chr5_4:52193329-52193348 | None:intergenic | 55.0% | |
| CCTAGACATGTTCGGCATGG+AGG | - | chr5_4:52193326-52193345 | Msa0857030:CDS | 55.0% | |
| TATCTTCCACGACGGCCGAT+TGG | - | chr5_4:52194859-52194878 | Msa0857030:intron | 55.0% | |
| GTGTAGGCCGCTTCACCAAT+CGG | + | chr5_4:52194877-52194896 | None:intergenic | 55.0% | |
| CCACAGGGTCCATTAGAGTG+CGG | + | chr5_4:52195099-52195118 | None:intergenic | 55.0% | |
| TACGTTGGAGGACGGAAGAG+AGG | + | chr5_4:52195123-52195142 | None:intergenic | 55.0% | |
| ! | CCGCTGGAGTTTTACGTTGG+AGG | + | chr5_4:52195135-52195154 | None:intergenic | 55.0% |
| AGCGTCCACATTTCGCATCC+TGG | + | chr5_4:52195218-52195237 | None:intergenic | 55.0% | |
| TCGCGACATGTCGTTCCTTC+TGG | + | chr5_4:52195286-52195305 | None:intergenic | 55.0% | |
| AACCCCTTGCAGTGGTTGCA+TGG | + | chr5_4:52195396-52195415 | None:intergenic | 55.0% | |
| ATGCAACCACTGCAAGGGGT+TGG | - | chr5_4:52195395-52195414 | Msa0857030:CDS | 55.0% | |
| AACCACTGCAAGGGGTTGGA+AGG | - | chr5_4:52195399-52195418 | Msa0857030:CDS | 55.0% | |
| ACCACTGCAAGGGGTTGGAA+GGG | - | chr5_4:52195400-52195419 | Msa0857030:CDS | 55.0% | |
| TGCAAGGGGTTGGAAGGGTT+TGG | - | chr5_4:52195405-52195424 | Msa0857030:CDS | 55.0% | |
| ATGTGGCTTCAACCGGCAAC+TGG | + | chr5_4:52195486-52195505 | None:intergenic | 55.0% | |
| ACTCTTCCCGGACGAACATG+TGG | + | chr5_4:52195503-52195522 | None:intergenic | 55.0% | |
| CACATCGTGTGGACTCTTCC+CGG | + | chr5_4:52195515-52195534 | None:intergenic | 55.0% | |
| GGAACCGAATCACGGGCCAT+AGG | + | chr5_4:52193308-52193327 | None:intergenic | 60.0% | |
| CCAGCTTCTCCGACCTCATC+CGG | - | chr5_4:52194835-52194854 | Msa0857030:intron | 60.0% | |
| CGGCCGTCGTGGAAGATAAC+CGG | + | chr5_4:52194857-52194876 | None:intergenic | 60.0% | |
| ACGACGGCCGATTGGTGAAG+CGG | - | chr5_4:52194867-52194886 | Msa0857030:intron | 60.0% | |
| ! | CCGCACTCTAATGGACCCTG+TGG | - | chr5_4:52195096-52195115 | Msa0857030:intron | 60.0% |
| GGACGGAAGAGAGGACCACA+GGG | + | chr5_4:52195114-52195133 | None:intergenic | 60.0% | |
| AGGACGGAAGAGAGGACCAC+AGG | + | chr5_4:52195115-52195134 | None:intergenic | 60.0% | |
| TCACGGTAGGAATGGGGGAG+AGG | + | chr5_4:52195189-52195208 | None:intergenic | 60.0% | |
| ACCCTTCCAACCCCTTGCAG+TGG | + | chr5_4:52195404-52195423 | None:intergenic | 60.0% | |
| GGGTTGGAAGGGTTTGGACC+CGG | - | chr5_4:52195411-52195430 | Msa0857030:CDS | 60.0% | |
| CGGGAAGAGTCCACACGATG+TGG | - | chr5_4:52195513-52195532 | Msa0857030:CDS | 60.0% | |
| CCGGATGAGGTCGGAGAAGC+TGG | + | chr5_4:52194838-52194857 | None:intergenic | 65.0% | |
| GCTTCACCAATCGGCCGTCG+TGG | + | chr5_4:52194868-52194887 | None:intergenic | 65.0% | |
| AAGAACACCGGGGCCGCCTG+CGG | + | chr5_4:52195062-52195081 | None:intergenic | 70.0% | |
| CCTGCGGAGGGAGGGAGAGG+TGG | + | chr5_4:52195046-52195065 | None:intergenic | 75.0% | |
| CCACCTCTCCCTCCCTCCGC+AGG | - | chr5_4:52195043-52195062 | Msa0857030:intron | 75.0% | |
| CCTCTCCCTCCCTCCGCAGG+CGG | - | chr5_4:52195046-52195065 | Msa0857030:intron | 75.0% | |
| ! | CCGCCTGCGGAGGGAGGGAG+AGG | + | chr5_4:52195049-52195068 | None:intergenic | 80.0% |
| ! | ACACCGGGGCCGCCTGCGGA+GGG | + | chr5_4:52195058-52195077 | None:intergenic | 80.0% |
| ! | AACACCGGGGCCGCCTGCGG+AGG | + | chr5_4:52195059-52195078 | None:intergenic | 80.0% |
| ! | CGGGGCCGCCTGCGGAGGGA+GGG | + | chr5_4:52195054-52195073 | None:intergenic | 85.0% |
| ! | CCTCCCTCCGCAGGCGGCCC+CGG | - | chr5_4:52195052-52195071 | Msa0857030:intron | 85.0% |
| ! | CCGGGGCCGCCTGCGGAGGG+AGG | + | chr5_4:52195055-52195074 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 52193106 | 52195906 | 52193106 | ID=Msa0857030;Name=Msa0857030 |
| chr5_4 | mRNA | 52193106 | 52195906 | 52193106 | ID=Msa0857030-mRNA-1;Parent=Msa0857030;Name=Msa0857030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=80|1|1|1|1|1|2|201|493 |
| chr5_4 | exon | 52193106 | 52194224 | 52193106 | ID=Msa0857030-mRNA-1:exon:16342;Parent=Msa0857030-mRNA-1 |
| chr5_4 | exon | 52195263 | 52195906 | 52195263 | ID=Msa0857030-mRNA-1:exon:16341;Parent=Msa0857030-mRNA-1 |
| chr5_4 | five_prime_UTR | 52195827 | 52195906 | 52195827 | ID=Msa0857030-mRNA-1:five_prime_utr;Parent=Msa0857030-mRNA-1 |
| chr5_4 | CDS | 52195263 | 52195826 | 52195263 | ID=Msa0857030-mRNA-1:cds;Parent=Msa0857030-mRNA-1 |
| chr5_4 | CDS | 52193307 | 52194224 | 52193307 | ID=Msa0857030-mRNA-1:cds;Parent=Msa0857030-mRNA-1 |
| chr5_4 | three_prime_UTR | 52193106 | 52193306 | 52193106 | ID=Msa0857030-mRNA-1:three_prime_utr;Parent=Msa0857030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
