Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816830 | XP_003616443.2 | 97.160 | 493 | 14 | 0 | 1 | 493 | 1 | 493 | 0.0 | 982 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816830 | sp|Q9CAY3|GPAT5_ARATH | 72.967 | 492 | 129 | 3 | 3 | 492 | 12 | 501 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816830 | G7KGS4 | 97.160 | 493 | 14 | 0 | 1 | 493 | 1 | 493 | 0.0 | 982 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612350 | Msa0816830 | 0.874464 | 6.617734e-68 | -8.615850e-47 |
| Msa0687580 | Msa0816830 | 0.832806 | 7.659321e-56 | -8.615850e-47 |
| Msa0737690 | Msa0816830 | 0.911002 | 9.943084e-83 | -8.615850e-47 |
| Msa0783850 | Msa0816830 | 0.831762 | 1.389207e-55 | -8.615850e-47 |
| Msa0816830 | Msa0818720 | 0.816597 | 5.094835e-52 | -8.615850e-47 |
| Msa0816830 | Msa0818760 | 0.820966 | 5.186087e-53 | -8.615850e-47 |
| Msa0816830 | Msa0827870 | 0.813768 | 2.165066e-51 | -8.615850e-47 |
| Msa0816830 | Msa0857030 | 0.898231 | 6.495365e-77 | -8.615850e-47 |
| Msa0816830 | Msa1131270 | 0.816465 | 5.454264e-52 | -8.615850e-47 |
| Msa0816830 | Msa1170890 | 0.809418 | 1.911239e-50 | -8.615850e-47 |
| Msa0816830 | Msa1203440 | 0.818859 | 1.573180e-52 | -8.615850e-47 |
| Msa0816830 | Msa1255690 | 0.807816 | 4.201739e-50 | -8.615850e-47 |
| Msa0389460 | Msa0816830 | 0.817253 | 3.628709e-52 | -8.615850e-47 |
| Msa0448950 | Msa0816830 | 0.812694 | 3.727727e-51 | -8.615850e-47 |
| Msa0497190 | Msa0816830 | 0.806427 | 8.269241e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816830 | MtrunA17_Chr5g0435581 | 97.160 | 493 | 14 | 0 | 1 | 493 | 1 | 493 | 0.0 | 982 |
| Msa0816830 | MtrunA17_Chr1g0170421 | 51.572 | 477 | 218 | 5 | 3 | 472 | 56 | 526 | 1.05e-166 | 484 |
| Msa0816830 | MtrunA17_Chr7g0241831 | 51.055 | 474 | 223 | 3 | 2 | 472 | 24 | 491 | 7.88e-162 | 468 |
| Msa0816830 | MtrunA17_Chr4g0005991 | 50.418 | 478 | 227 | 4 | 2 | 475 | 21 | 492 | 3.65e-158 | 458 |
| Msa0816830 | MtrunA17_Chr8g0348781 | 47.059 | 476 | 242 | 5 | 2 | 472 | 27 | 497 | 6.89e-146 | 427 |
| Msa0816830 | MtrunA17_Chr5g0443341 | 44.676 | 479 | 251 | 6 | 2 | 476 | 65 | 533 | 1.11e-139 | 412 |
| Msa0816830 | MtrunA17_Chr3g0096481 | 43.750 | 480 | 247 | 9 | 2 | 472 | 60 | 525 | 1.05e-130 | 389 |
| Msa0816830 | MtrunA17_Chr5g0425071 | 40.461 | 477 | 267 | 8 | 3 | 473 | 17 | 482 | 2.21e-118 | 356 |
| Msa0816830 | MtrunA17_Chr1g0194391 | 41.372 | 481 | 255 | 12 | 3 | 472 | 65 | 529 | 2.83e-116 | 353 |
| Msa0816830 | MtrunA17_Chr3g0096591 | 54.044 | 272 | 110 | 6 | 209 | 472 | 7 | 271 | 1.30e-91 | 280 |
| Msa0816830 | MtrunA17_Chr3g0096581 | 31.915 | 188 | 118 | 4 | 2 | 188 | 64 | 242 | 3.62e-27 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816830 | AT3G11430.1 | 72.967 | 492 | 129 | 3 | 3 | 492 | 12 | 501 | 0.0 | 748 |
| Msa0816830 | AT5G06090.1 | 72.154 | 492 | 133 | 3 | 3 | 492 | 10 | 499 | 0.0 | 717 |
| Msa0816830 | AT2G38110.1 | 48.319 | 476 | 234 | 3 | 3 | 472 | 25 | 494 | 4.69e-147 | 430 |
| Msa0816830 | AT4G00400.1 | 46.541 | 477 | 245 | 6 | 2 | 473 | 22 | 493 | 1.24e-139 | 411 |
| Msa0816830 | AT1G01610.1 | 47.490 | 478 | 240 | 7 | 2 | 473 | 22 | 494 | 6.93e-138 | 407 |
| Msa0816830 | AT1G06520.1 | 43.320 | 494 | 244 | 9 | 2 | 472 | 104 | 584 | 3.10e-133 | 398 |
| Msa0816830 | AT3G11325.2 | 60.345 | 290 | 82 | 1 | 201 | 490 | 134 | 390 | 2.06e-117 | 351 |
| Msa0816830 | AT3G11325.2 | 56.190 | 105 | 46 | 0 | 12 | 116 | 9 | 113 | 1.30e-33 | 131 |
| Msa0816830 | AT3G11325.1 | 60.345 | 290 | 82 | 1 | 201 | 490 | 131 | 387 | 2.55e-117 | 350 |
| Msa0816830 | AT3G11325.1 | 56.190 | 105 | 46 | 0 | 12 | 116 | 6 | 110 | 1.21e-33 | 131 |
| Msa0816830 | AT1G02390.1 | 41.988 | 493 | 246 | 15 | 3 | 472 | 52 | 527 | 1.26e-111 | 341 |
| Msa0816830 | AT4G01950.1 | 41.322 | 484 | 258 | 14 | 3 | 472 | 46 | 517 | 2.92e-108 | 332 |
| Msa0816830 | AT4G01950.2 | 41.513 | 489 | 250 | 15 | 3 | 472 | 74 | 545 | 6.63e-108 | 332 |
Find 151 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCACATGTCAAGATTATT+TGG | 0.150256 | 5_3:-51545438 | Msa0816830:CDS |
| CAATATCCTTTGAACATAAT+TGG | 0.202872 | 5_3:+51544897 | None:intergenic |
| GCTGGCTATCATTGTGCTTT+TGG | 0.221316 | 5_3:+51545616 | None:intergenic |
| AGATCATCCATGAAGAATTT+TGG | 0.231300 | 5_3:+51547002 | None:intergenic |
| TTACGTGCAGATGAAGTAAT+TGG | 0.248051 | 5_3:-51546882 | Msa0816830:CDS |
| TTACTCGAAAAGATAAATAT+AGG | 0.294416 | 5_3:-51544843 | Msa0816830:CDS |
| CAATTATGTTCAAAGGATAT+TGG | 0.310416 | 5_3:-51544896 | Msa0816830:CDS |
| TCCCAAGGTTAATCTGATTA+TGG | 0.312514 | 5_3:+51545485 | None:intergenic |
| ATACTCTATTTCTCGGTTAT+CGG | 0.316529 | 5_3:-51545274 | Msa0816830:CDS |
| ATAGAGCACTAAATCGTAAA+AGG | 0.319770 | 5_3:+51545121 | None:intergenic |
| TTATAGTACCTGGCAAAGTT+TGG | 0.321027 | 5_3:+51546698 | None:intergenic |
| TCGCGACATGTCGTTCCTTC+TGG | 0.322328 | 5_3:+51545150 | None:intergenic |
| AAAAGATAAATATAGGGTTT+TGG | 0.322909 | 5_3:-51544836 | Msa0816830:CDS |
| CCGCCTGCGGAGGGAGGGAG+AGG | 0.341597 | 5_3:+51545387 | None:intergenic |
| CCTCCCTACTAATCATCCTT+TGG | 0.351925 | 5_3:-51545530 | Msa0816830:CDS |
| TACTCGAAAAGATAAATATA+GGG | 0.353770 | 5_3:-51544842 | Msa0816830:CDS |
| CCTCCCTCCGCAGGCGGCCC+CGG | 0.355972 | 5_3:-51545381 | Msa0816830:CDS |
| AACAAATGCAACCACCATTT+AGG | 0.356648 | 5_3:-51545644 | Msa0816830:CDS |
| TGCAAGGGGTTGGAAGGGTT+TGG | 0.357093 | 5_3:-51545028 | Msa0816830:CDS |
| CATCGTGTCTTGTACTTCAT+TGG | 0.372552 | 5_3:-51544800 | Msa0816830:CDS |
| ATGATTAGTAGGGAGGTTAA+TGG | 0.373547 | 5_3:+51545537 | None:intergenic |
| CCATACCCAACTTTGGAACT+TGG | 0.375224 | 5_3:+51546760 | None:intergenic |
| GTGTACTCACCGCACTCTAA+TGG | 0.376230 | 5_3:-51545346 | Msa0816830:CDS |
| TAATCCTATGGCCCGTGATT+CGG | 0.383281 | 5_3:-51547133 | Msa0816830:CDS |
| ACAGAATATTGTTCATCTAA+TGG | 0.385742 | 5_3:-51547267 | Msa0816830:exon |
| TACTTTCTTGAACCAGTTGC+CGG | 0.390520 | 5_3:-51544962 | Msa0816830:CDS |
| AATAGGTTTGGTTTAGCTAC+AGG | 0.398808 | 5_3:-51546843 | Msa0816830:CDS |
| GACGAACATGTGGCTTCAAC+CGG | 0.402068 | 5_3:+51544943 | None:intergenic |
| ATGTGAGGAATGGCCCAAAA+AGG | 0.402197 | 5_3:+51545453 | None:intergenic |
| GTTAGTCTCACGGTAGGAAT+GGG | 0.403818 | 5_3:+51545240 | None:intergenic |
| AATCTCCGATTTATGAATTC+CGG | 0.404562 | 5_3:+51547049 | None:intergenic |
| GTAACCTCATAAACTGGTCT+TGG | 0.404829 | 5_3:+51544982 | None:intergenic |
| CCGGATGAGGTCGGAGAAGC+TGG | 0.406448 | 5_3:+51545598 | None:intergenic |
| AATAACCAAGTTCCAAAGTT+GGG | 0.409025 | 5_3:-51546765 | Msa0816830:CDS |
| TTCTTTCTCCAAACTTTGCC+AGG | 0.409775 | 5_3:-51546706 | Msa0816830:intron |
| ACAAACAACTAAATCTCCTT+TGG | 0.410080 | 5_3:+51545173 | None:intergenic |
| AGGATATTGGCTGCAACTCT+AGG | 0.410254 | 5_3:-51544883 | Msa0816830:CDS |
| AAGAAAGTAACCTCATAAAC+TGG | 0.410853 | 5_3:+51544976 | None:intergenic |
| TGAAGTAATTGGGAGTGAAT+TGG | 0.411804 | 5_3:-51546871 | Msa0816830:CDS |
| CTTCATGTTAGTAGCGTTCG+AGG | 0.429967 | 5_3:-51547186 | Msa0816830:CDS |
| AGCGTCCACATTTCGCATCC+TGG | 0.432122 | 5_3:+51545218 | None:intergenic |
| CGGGGCCGCCTGCGGAGGGA+GGG | 0.433345 | 5_3:+51545382 | None:intergenic |
| CCGGGGCCGCCTGCGGAGGG+AGG | 0.436986 | 5_3:+51545381 | None:intergenic |
| GAATCCAAAGGATGATTAGT+AGG | 0.437047 | 5_3:+51545526 | None:intergenic |
| GGGTTCATGAAGAAGAAAAC+CGG | 0.438572 | 5_3:+51545003 | None:intergenic |
| TATGGCTAGTAATATACCTA+TGG | 0.440019 | 5_3:+51545503 | None:intergenic |
| GGTTAGTCTCACGGTAGGAA+TGG | 0.440830 | 5_3:+51545239 | None:intergenic |
| AGCCTTGCCATACCCAACTT+TGG | 0.442432 | 5_3:+51546753 | None:intergenic |
| CAATAACCAAGTTCCAAAGT+TGG | 0.452601 | 5_3:-51546766 | Msa0816830:CDS |
| TAACCTCATAAACTGGTCTT+GGG | 0.452875 | 5_3:+51544983 | None:intergenic |
| CGGTAACATACTCTATTTCT+CGG | 0.456428 | 5_3:-51545281 | Msa0816830:CDS |
| CACATCGTGTGGACTCTTCC+CGG | 0.458052 | 5_3:+51544921 | None:intergenic |
| GAACCCAAGACCAGTTTATG+AGG | 0.459966 | 5_3:-51544986 | Msa0816830:CDS |
| ATGTGGCTTCAACCGGCAAC+TGG | 0.460408 | 5_3:+51544950 | None:intergenic |
| ACACCGGGGCCGCCTGCGGA+GGG | 0.460445 | 5_3:+51545378 | None:intergenic |
| TTAGTAGCGTTCGAGGCCTC+AGG | 0.462333 | 5_3:-51547179 | Msa0816830:CDS |
| CGGCCGTCGTGGAAGATAAC+CGG | 0.466207 | 5_3:+51545579 | None:intergenic |
| GAACCCTACTCTATAGTTCA+TGG | 0.467040 | 5_3:+51545065 | None:intergenic |
| GTTGAAGCCACATGTTCGTC+CGG | 0.467761 | 5_3:-51544940 | Msa0816830:CDS |
| TCGTTCTGCTATTAATCCTA+TGG | 0.468159 | 5_3:-51547145 | Msa0816830:CDS |
| ATTGGTTGATCAAGTAAAGA+AGG | 0.479552 | 5_3:-51544782 | Msa0816830:CDS |
| GATTTAGTTGTTTGTCCAGA+AGG | 0.481237 | 5_3:-51545165 | Msa0816830:CDS |
| GTGTAGGCCGCTTCACCAAT+CGG | 0.482482 | 5_3:+51545559 | None:intergenic |
| CGATTTATGAATTCCGGCTA+CGG | 0.482955 | 5_3:+51547055 | None:intergenic |
| ACTCTATAGTTCATGGCAAC+CGG | 0.483007 | 5_3:+51545072 | None:intergenic |
| CCAGCTTCTCCGACCTCATC+CGG | 0.484716 | 5_3:-51545598 | Msa0816830:CDS |
| AACCCCTTGCAGTGGTTGCA+TGG | 0.489933 | 5_3:+51545040 | None:intergenic |
| TACGTGCAGATGAAGTAATT+GGG | 0.490722 | 5_3:-51546881 | Msa0816830:CDS |
| CCACCTCTCCCTCCCTCCGC+AGG | 0.490767 | 5_3:-51545390 | Msa0816830:CDS |
| CACTTATGAGAAAAGGGTTG+TGG | 0.495510 | 5_3:-51546952 | Msa0816830:CDS |
| AACACCGGGGCCGCCTGCGG+AGG | 0.495682 | 5_3:+51545377 | None:intergenic |
| CCTCCATGCCGAGCATCTCT+AGG | 0.500161 | 5_3:+51547108 | None:intergenic |
| TCAGTTGTCTCTGAATTAGA+AGG | 0.500272 | 5_3:-51547242 | Msa0816830:CDS |
| TTTAGCAACTCTTTCAGAAA+CGG | 0.500932 | 5_3:+51546794 | None:intergenic |
| CGTAGCCGGAATTCATAAAT+CGG | 0.506588 | 5_3:-51547054 | Msa0816830:CDS |
| GGGTTGGAAGGGTTTGGACC+CGG | 0.513399 | 5_3:-51545022 | Msa0816830:CDS |
| GGTGGCAAAGTTATTGTGAA+GGG | 0.518531 | 5_3:-51545417 | Msa0816830:CDS |
| ATCTCTAGGAACCGAATCAC+GGG | 0.519411 | 5_3:+51547122 | None:intergenic |
| ATGATCTTTGTAGCCGTAGC+CGG | 0.521019 | 5_3:-51547068 | Msa0816830:CDS |
| TATCTTCCACGACGGCCGAT+TGG | 0.522796 | 5_3:-51545574 | Msa0816830:CDS |
| AACCACTGCAAGGGGTTGGA+AGG | 0.523750 | 5_3:-51545034 | Msa0816830:CDS |
| CCAAGTTCCAAAGTTGGGTA+TGG | 0.524716 | 5_3:-51546760 | Msa0816830:CDS |
| TATGGTGAAGAGGTTTGTTG+AGG | 0.528470 | 5_3:-51546910 | Msa0816830:CDS |
| AGCCATAATCAGATTAACCT+TGG | 0.529275 | 5_3:-51545487 | Msa0816830:CDS |
| GCCATAATCAGATTAACCTT+GGG | 0.530102 | 5_3:-51545486 | Msa0816830:CDS |
| CTTCCATGCAACCACTGCAA+GGG | 0.532313 | 5_3:-51545043 | Msa0816830:CDS |
| ATGCAACCACTGCAAGGGGT+TGG | 0.533517 | 5_3:-51545038 | Msa0816830:CDS |
| GGATATTGGCTGCAACTCTA+GGG | 0.537098 | 5_3:-51544882 | Msa0816830:CDS |
| CCTGCGGAGGGAGGGAGAGG+TGG | 0.537490 | 5_3:+51545390 | None:intergenic |
| AACCTCTTCACCATAACTCC+TGG | 0.538516 | 5_3:+51546918 | None:intergenic |
| GAACGCTACTAACATGAAGT+AGG | 0.542737 | 5_3:+51547190 | None:intergenic |
| GAAATAGAGTATGTTACCGC+TGG | 0.548665 | 5_3:+51545285 | None:intergenic |
| TGGTGGCAAAGTTATTGTGA+AGG | 0.548955 | 5_3:-51545418 | Msa0816830:CDS |
| ACCACTGCAAGGGGTTGGAA+GGG | 0.554018 | 5_3:-51545033 | Msa0816830:CDS |
| ACATAATTGGCCACATCGTG+TGG | 0.555416 | 5_3:+51544910 | None:intergenic |
| TCGCATCCTGGTTAGTCTCA+CGG | 0.556814 | 5_3:+51545230 | None:intergenic |
| ACGACGGCCGATTGGTGAAG+CGG | 0.557445 | 5_3:-51545566 | Msa0816830:CDS |
| ATGTAAGGGTGCAAGTGTGC+TGG | 0.558445 | 5_3:-51544671 | Msa0816830:three_prime_UTR |
| TTCCATGCAACCACTGCAAG+GGG | 0.559446 | 5_3:-51545042 | Msa0816830:CDS |
| CACATGTCAAGATTATTTGG+TGG | 0.561180 | 5_3:-51545435 | Msa0816830:CDS |
| GCACTAAATCGTAAAAGGAA+AGG | 0.562800 | 5_3:+51545126 | None:intergenic |
| TAATCTTGACATGTGAGGAA+TGG | 0.563106 | 5_3:+51545443 | None:intergenic |
| ATGTGGCCAATTATGTTCAA+AGG | 0.565821 | 5_3:-51544903 | Msa0816830:CDS |
| ATCATCCTTTGGATTCCCAT+AGG | 0.567783 | 5_3:-51545519 | Msa0816830:CDS |
| TGCCAGGAGTTATGGTGAAG+AGG | 0.568451 | 5_3:-51546920 | Msa0816830:CDS |
| ACCCTTCCAACCCCTTGCAG+TGG | 0.568618 | 5_3:+51545032 | None:intergenic |
| AAAAGGTAAAATGGCTCCCA+AGG | 0.569333 | 5_3:+51545470 | None:intergenic |
| GGAAGATAACCGGATGAGGT+CGG | 0.569958 | 5_3:+51545589 | None:intergenic |
| ATGATCTTGACATGGAAGCT+TGG | 0.575350 | 5_3:-51546986 | Msa0816830:CDS |
| TTGAAGCCACATGTTCGTCC+GGG | 0.575686 | 5_3:-51544939 | Msa0816830:CDS |
| TTCCAAAGTTGGGTATGGCA+AGG | 0.576401 | 5_3:-51546755 | Msa0816830:CDS |
| ATGGCTAGTAATATACCTAT+GGG | 0.576541 | 5_3:+51545504 | None:intergenic |
| TTGCCATGAACTATAGAGTA+GGG | 0.580288 | 5_3:-51545068 | Msa0816830:CDS |
| CTTCATGGATGATCTTGACA+TGG | 0.581073 | 5_3:-51546994 | Msa0816830:CDS |
| TCTTCCATGCAACCACTGCA+AGG | 0.581170 | 5_3:-51545044 | Msa0816830:CDS |
| AGTAGGGAGGTTAATGGTGT+AGG | 0.581490 | 5_3:+51545543 | None:intergenic |
| AAGAACACCGGGGCCGCCTG+CGG | 0.582203 | 5_3:+51545374 | None:intergenic |
| CATCTCTAGGAACCGAATCA+CGG | 0.582902 | 5_3:+51547121 | None:intergenic |
| TACGTTGAAGGACGGAAGAG+AGG | 0.586719 | 5_3:+51545313 | None:intergenic |
| AGGACGGAAGAGAGGACCAC+AGG | 0.587085 | 5_3:+51545321 | None:intergenic |
| GGAACCGAATCACGGGCCAT+AGG | 0.587795 | 5_3:+51547129 | None:intergenic |
| ATAAAATATGAGTTATCCAA+AGG | 0.588127 | 5_3:-51545189 | Msa0816830:CDS |
| GTTCCTAGAGATGCTCGGCA+TGG | 0.589970 | 5_3:-51547111 | Msa0816830:CDS |
| TCGTGGAAGATAACCGGATG+AGG | 0.592639 | 5_3:+51545585 | None:intergenic |
| AATCCAAAGGATGATTAGTA+GGG | 0.594053 | 5_3:+51545527 | None:intergenic |
| ACTAACCAGGATGCGAAATG+TGG | 0.596166 | 5_3:-51545223 | Msa0816830:CDS |
| ACTCTTCCCGGACGAACATG+TGG | 0.597450 | 5_3:+51544933 | None:intergenic |
| GCTTCACCAATCGGCCGTCG+TGG | 0.597938 | 5_3:+51545568 | None:intergenic |
| TTAGTCTCACGGTAGGAATG+GGG | 0.605101 | 5_3:+51545241 | None:intergenic |
| CCTCTCCCTCCCTCCGCAGG+CGG | 0.606101 | 5_3:-51545387 | Msa0816830:CDS |
| CCAAATAATCTTGACATGTG+AGG | 0.613846 | 5_3:+51545438 | None:intergenic |
| GGACGGAAGAGAGGACCACA+GGG | 0.617086 | 5_3:+51545322 | None:intergenic |
| CCAAAGGATGATTAGTAGGG+AGG | 0.617133 | 5_3:+51545530 | None:intergenic |
| TAGTCTCACGGTAGGAATGG+GGG | 0.621006 | 5_3:+51545242 | None:intergenic |
| GATCATTATTATGGTAAACA+AGG | 0.622764 | 5_3:+51544742 | None:intergenic |
| ACTCACAGATCGGATAGTAC+CGG | 0.630574 | 5_3:-51545091 | Msa0816830:CDS |
| TTCCTACCGTGAGACTAACC+AGG | 0.633579 | 5_3:-51545236 | Msa0816830:CDS |
| ATTCGGTTCCTAGAGATGCT+CGG | 0.633640 | 5_3:-51547116 | Msa0816830:CDS |
| GTTGCCATGAACTATAGAGT+AGG | 0.638820 | 5_3:-51545069 | Msa0816830:CDS |
| CGGGAAGAGTCCACACGATG+TGG | 0.640851 | 5_3:-51544920 | Msa0816830:CDS |
| GGTTCATGAAGAAGAAAACC+GGG | 0.655673 | 5_3:+51545004 | None:intergenic |
| TATTTGCAGAACTCACAGAT+CGG | 0.656460 | 5_3:-51545101 | Msa0816830:CDS |
| CATCCGGTTATCTTCCACGA+CGG | 0.663414 | 5_3:-51545582 | Msa0816830:CDS |
| ATATACCTATGGGAATCCAA+AGG | 0.666680 | 5_3:+51545514 | None:intergenic |
| CCTAGAGATGCTCGGCATGG+AGG | 0.670608 | 5_3:-51547108 | Msa0816830:CDS |
| GGTTGATCAAGTAAAGAAGG+TGG | 0.673976 | 5_3:-51544779 | Msa0816830:CDS |
| ATCCTGGTTAGTCTCACGGT+AGG | 0.682353 | 5_3:+51545234 | None:intergenic |
| AACGAAGCGAATCAAACCTG+AGG | 0.685586 | 5_3:+51547163 | None:intergenic |
| CCACAGGGTCCATTAGAGTG+CGG | 0.712721 | 5_3:+51545337 | None:intergenic |
| CCTTCAACGTAAAACTCCAG+CGG | 0.722705 | 5_3:-51545301 | Msa0816830:CDS |
| CCGCACTCTAATGGACCCTG+TGG | 0.755400 | 5_3:-51545337 | Msa0816830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTTTTTTTTTTATTAG+TGG | - | chr5_3:51545732-51545751 | Msa0816830:intron | 10.0% |
| !!! | TATTTCAACGAATAATTTTT+TGG | - | chr5_3:51545275-51545294 | Msa0816830:CDS | 15.0% |
| !! | GAAACATATTTAAAAAAAGA+CGG | + | chr5_3:51545362-51545381 | None:intergenic | 15.0% |
| !! | AATAGATTAAAAAGAATACA+CGG | + | chr5_3:51545827-51545846 | None:intergenic | 15.0% |
| !!! | TTCTGTTTCTTTAATTTTTT+CGG | - | chr5_3:51547273-51547292 | Msa0816830:five_prime_UTR | 15.0% |
| !! | GTTAAATAAATTATAGTACC+TGG | + | chr5_3:51545199-51545218 | None:intergenic | 20.0% |
| !! | ATGAATGAAAAAATTCGATT+TGG | - | chr5_3:51545236-51545255 | Msa0816830:CDS | 20.0% |
| !!! | TTTTTCTCAAAATTGTCATT+TGG | - | chr5_3:51545327-51545346 | Msa0816830:CDS | 20.0% |
| !!! | ATTGTATACGAACAAATTTT+GGG | + | chr5_3:51545451-51545470 | None:intergenic | 20.0% |
| !!! | AATTGTATACGAACAAATTT+TGG | + | chr5_3:51545452-51545471 | None:intergenic | 20.0% |
| !!! | AGAAACAAAATTTTATTCCA+AGG | - | chr5_3:51545620-51545639 | Msa0816830:CDS | 20.0% |
| !! | ATAGATTAAAAAGAATACAC+GGG | + | chr5_3:51545826-51545845 | None:intergenic | 20.0% |
| !! | CTTATAAGAAACAACAAAAT+TGG | + | chr5_3:51545998-51546017 | None:intergenic | 20.0% |
| !! | ATAAAATATGAGTTATCCAA+AGG | - | chr5_3:51546695-51546714 | Msa0816830:intron | 20.0% |
| !! | TTACTCGAAAAGATAAATAT+AGG | - | chr5_3:51547041-51547060 | Msa0816830:CDS | 20.0% |
| !! | TACTCGAAAAGATAAATATA+GGG | - | chr5_3:51547042-51547061 | Msa0816830:CDS | 20.0% |
| !!! | AAAAGATAAATATAGGGTTT+TGG | - | chr5_3:51547048-51547067 | Msa0816830:CDS | 20.0% |
| !!! | ATTTTGTACGATCATTATTA+TGG | + | chr5_3:51547154-51547173 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTGTATGTATGTA+AGG | - | chr5_3:51547198-51547217 | Msa0816830:CDS | 20.0% |
| !!! | TTTTGTTTGTATGTATGTAA+GGG | - | chr5_3:51547199-51547218 | Msa0816830:CDS | 20.0% |
| !!! | TCTGTTTCTTTAATTTTTTC+GGG | - | chr5_3:51547274-51547293 | Msa0816830:five_prime_UTR | 20.0% |
| ! | ACAGAATATTGTTCATCTAA+TGG | - | chr5_3:51544617-51544636 | Msa0816830:three_prime_UTR | 25.0% |
| !! | AGTTTTACCAAAATTCTTCA+TGG | - | chr5_3:51544875-51544894 | Msa0816830:CDS | 25.0% |
| !!! | TTTTTAGCACTTATGAGAAA+AGG | - | chr5_3:51544925-51544944 | Msa0816830:CDS | 25.0% |
| !! | TTTTAGCACTTATGAGAAAA+GGG | - | chr5_3:51544926-51544945 | Msa0816830:CDS | 25.0% |
| !!! | TTTGCCTTTACTTTTATGTT+CGG | - | chr5_3:51545472-51545491 | Msa0816830:CDS | 25.0% |
| ! | TTAAGTGTAAGTATTCCAAA+AGG | - | chr5_3:51545547-51545566 | Msa0816830:CDS | 25.0% |
| ! | TAAGTGTAAGTATTCCAAAA+GGG | - | chr5_3:51545548-51545567 | Msa0816830:CDS | 25.0% |
| ! | ACAACTATAAGCCATATTAT+AGG | + | chr5_3:51545581-51545600 | None:intergenic | 25.0% |
| ! | TAATATGGCTTATAGTTGTT+TGG | - | chr5_3:51545582-51545601 | Msa0816830:CDS | 25.0% |
| !!! | TATGGGTTAAATACGTTTTT+TGG | + | chr5_3:51545905-51545924 | None:intergenic | 25.0% |
| !!! | TAAATCGACTCGAAAATTAT+GGG | + | chr5_3:51545922-51545941 | None:intergenic | 25.0% |
| !!! | ACAAGATTTTGATACTAAAC+AGG | + | chr5_3:51545945-51545964 | None:intergenic | 25.0% |
| ! | CAATATCCTTTGAACATAAT+TGG | + | chr5_3:51546990-51547009 | None:intergenic | 25.0% |
| ! | CAATTATGTTCAAAGGATAT+TGG | - | chr5_3:51546988-51547007 | Msa0816830:CDS | 25.0% |
| ! | GATCATTATTATGGTAAACA+AGG | + | chr5_3:51547145-51547164 | None:intergenic | 25.0% |
| !!! | CTGTTTCTTTAATTTTTTCG+GGG | - | chr5_3:51547275-51547294 | Msa0816830:five_prime_UTR | 25.0% |
| AATCTCCGATTTATGAATTC+CGG | + | chr5_3:51544838-51544857 | None:intergenic | 30.0% | |
| ! | AGATCATCCATGAAGAATTT+TGG | + | chr5_3:51544885-51544904 | None:intergenic | 30.0% |
| !!! | GAATTGGTTTTCAATAGGTT+TGG | - | chr5_3:51545029-51545048 | Msa0816830:CDS | 30.0% |
| TTTAGCAACTCTTTCAGAAA+CGG | + | chr5_3:51545093-51545112 | None:intergenic | 30.0% | |
| AATAACCAAGTTCCAAAGTT+GGG | - | chr5_3:51545119-51545138 | Msa0816830:CDS | 30.0% | |
| TTCATTGCAATTTCTCACTT+TGG | + | chr5_3:51545221-51545240 | None:intergenic | 30.0% | |
| ATGACCGAACATAAAAGTAA+AGG | + | chr5_3:51545479-51545498 | None:intergenic | 30.0% | |
| !! | GTAAATCGACTCGAAAATTA+TGG | + | chr5_3:51545923-51545942 | None:intergenic | 30.0% |
| AATCCAAAGGATGATTAGTA+GGG | + | chr5_3:51546360-51546379 | None:intergenic | 30.0% | |
| ATGGCTAGTAATATACCTAT+GGG | + | chr5_3:51546383-51546402 | None:intergenic | 30.0% | |
| TATGGCTAGTAATATACCTA+TGG | + | chr5_3:51546384-51546403 | None:intergenic | 30.0% | |
| ! | ATACTCTATTTCTCGGTTAT+CGG | - | chr5_3:51546610-51546629 | Msa0816830:intron | 30.0% |
| ACAAACAACTAAATCTCCTT+TGG | + | chr5_3:51546714-51546733 | None:intergenic | 30.0% | |
| ! | ATAGAGCACTAAATCGTAAA+AGG | + | chr5_3:51546766-51546785 | None:intergenic | 30.0% |
| AAGAAAGTAACCTCATAAAC+TGG | + | chr5_3:51546911-51546930 | None:intergenic | 30.0% | |
| !!! | ATAAATATAGGGTTTTGGCT+GGG | - | chr5_3:51547053-51547072 | Msa0816830:CDS | 30.0% |
| ATTGGTTGATCAAGTAAAGA+AGG | - | chr5_3:51547102-51547121 | Msa0816830:CDS | 30.0% | |
| TCAGTTGTCTCTGAATTAGA+AGG | - | chr5_3:51544642-51544661 | Msa0816830:three_prime_UTR | 35.0% | |
| TCGTTCTGCTATTAATCCTA+TGG | - | chr5_3:51544739-51544758 | Msa0816830:exon | 35.0% | |
| AACAAAAATGCCAGGAGTTA+TGG | - | chr5_3:51544956-51544975 | Msa0816830:CDS | 35.0% | |
| TTACGTGCAGATGAAGTAAT+TGG | - | chr5_3:51545002-51545021 | Msa0816830:CDS | 35.0% | |
| TACGTGCAGATGAAGTAATT+GGG | - | chr5_3:51545003-51545022 | Msa0816830:CDS | 35.0% | |
| TGAAGTAATTGGGAGTGAAT+TGG | - | chr5_3:51545013-51545032 | Msa0816830:CDS | 35.0% | |
| !!! | GGAGTGAATTGGTTTTCAAT+AGG | - | chr5_3:51545024-51545043 | Msa0816830:CDS | 35.0% |
| ! | AATAGGTTTGGTTTAGCTAC+AGG | - | chr5_3:51545041-51545060 | Msa0816830:CDS | 35.0% |
| CAATAACCAAGTTCCAAAGT+TGG | - | chr5_3:51545118-51545137 | Msa0816830:CDS | 35.0% | |
| TTATAGTACCTGGCAAAGTT+TGG | + | chr5_3:51545189-51545208 | None:intergenic | 35.0% | |
| ! | TTATAGGAAGTTCACCCTTT+TGG | + | chr5_3:51545565-51545584 | None:intergenic | 35.0% |
| AGGGTGAACTTCCTATAATA+TGG | - | chr5_3:51545567-51545586 | Msa0816830:CDS | 35.0% | |
| !! | TTATAGTTGTTTGGTGCTTG+TGG | - | chr5_3:51545591-51545610 | Msa0816830:CDS | 35.0% |
| CTCAGATAAAGACTCTTTCA+CGG | - | chr5_3:51545672-51545691 | Msa0816830:intron | 35.0% | |
| TCAGATAAAGACTCTTTCAC+GGG | - | chr5_3:51545673-51545692 | Msa0816830:intron | 35.0% | |
| ! | GGTTGGTTCATAAATACGAT+GGG | - | chr5_3:51545695-51545714 | Msa0816830:intron | 35.0% |
| ! | GTTGGTTCATAAATACGATG+GGG | - | chr5_3:51545696-51545715 | Msa0816830:intron | 35.0% |
| TTGGTTCATAAATACGATGG+GGG | - | chr5_3:51545697-51545716 | Msa0816830:intron | 35.0% | |
| ! | GACATATTTTGTATGTGTGC+AGG | - | chr5_3:51546217-51546236 | Msa0816830:intron | 35.0% |
| AACAAATGCAACCACCATTT+AGG | - | chr5_3:51546240-51546259 | Msa0816830:intron | 35.0% | |
| ATGATTAGTAGGGAGGTTAA+TGG | + | chr5_3:51546350-51546369 | None:intergenic | 35.0% | |
| GAATCCAAAGGATGATTAGT+AGG | + | chr5_3:51546361-51546380 | None:intergenic | 35.0% | |
| ATATACCTATGGGAATCCAA+AGG | + | chr5_3:51546373-51546392 | None:intergenic | 35.0% | |
| AGCCATAATCAGATTAACCT+TGG | - | chr5_3:51546397-51546416 | Msa0816830:intron | 35.0% | |
| GCCATAATCAGATTAACCTT+GGG | - | chr5_3:51546398-51546417 | Msa0816830:intron | 35.0% | |
| TCCCAAGGTTAATCTGATTA+TGG | + | chr5_3:51546402-51546421 | None:intergenic | 35.0% | |
| AATGGCCCAAAAAGGTAAAA+TGG | + | chr5_3:51546426-51546445 | None:intergenic | 35.0% | |
| TAATCTTGACATGTGAGGAA+TGG | + | chr5_3:51546444-51546463 | None:intergenic | 35.0% | |
| CCAAATAATCTTGACATGTG+AGG | + | chr5_3:51546449-51546468 | None:intergenic | 35.0% | |
| CCTCACATGTCAAGATTATT+TGG | - | chr5_3:51546446-51546465 | Msa0816830:intron | 35.0% | |
| CACATGTCAAGATTATTTGG+TGG | - | chr5_3:51546449-51546468 | Msa0816830:intron | 35.0% | |
| AGTACACACAAAAAGAACAC+CGG | + | chr5_3:51546525-51546544 | None:intergenic | 35.0% | |
| ! | CGGTAACATACTCTATTTCT+CGG | - | chr5_3:51546603-51546622 | Msa0816830:intron | 35.0% |
| GATTTAGTTGTTTGTCCAGA+AGG | - | chr5_3:51546719-51546738 | Msa0816830:CDS | 35.0% | |
| GCACTAAATCGTAAAAGGAA+AGG | + | chr5_3:51546761-51546780 | None:intergenic | 35.0% | |
| TATTTGCAGAACTCACAGAT+CGG | - | chr5_3:51546783-51546802 | Msa0816830:CDS | 35.0% | |
| TTGCCATGAACTATAGAGTA+GGG | - | chr5_3:51546816-51546835 | Msa0816830:CDS | 35.0% | |
| !! | TAACCTCATAAACTGGTCTT+GGG | + | chr5_3:51546904-51546923 | None:intergenic | 35.0% |
| ATGTGGCCAATTATGTTCAA+AGG | - | chr5_3:51546981-51547000 | Msa0816830:CDS | 35.0% | |
| !! | GATAAATATAGGGTTTTGGC+TGG | - | chr5_3:51547052-51547071 | Msa0816830:CDS | 35.0% |
| GAACGCTACTAACATGAAGT+AGG | + | chr5_3:51544697-51544716 | None:intergenic | 40.0% | |
| CGATTTATGAATTCCGGCTA+CGG | + | chr5_3:51544832-51544851 | None:intergenic | 40.0% | |
| CGTAGCCGGAATTCATAAAT+CGG | - | chr5_3:51544830-51544849 | Msa0816830:CDS | 40.0% | |
| CTTCATGGATGATCTTGACA+TGG | - | chr5_3:51544890-51544909 | Msa0816830:CDS | 40.0% | |
| ATGATCTTGACATGGAAGCT+TGG | - | chr5_3:51544898-51544917 | Msa0816830:CDS | 40.0% | |
| CACTTATGAGAAAAGGGTTG+TGG | - | chr5_3:51544932-51544951 | Msa0816830:CDS | 40.0% | |
| GTTGTGGTAACAAAAATGCC+AGG | - | chr5_3:51544948-51544967 | Msa0816830:CDS | 40.0% | |
| !! | TATGGTGAAGAGGTTTGTTG+AGG | - | chr5_3:51544974-51544993 | Msa0816830:CDS | 40.0% |
| TTCTTTCTCCAAACTTTGCC+AGG | - | chr5_3:51545178-51545197 | Msa0816830:CDS | 40.0% | |
| TGATGTTTGCATGTTCACCT+TGG | + | chr5_3:51545640-51545659 | None:intergenic | 40.0% | |
| CAGATAAAGACTCTTTCACG+GGG | - | chr5_3:51545674-51545693 | Msa0816830:intron | 40.0% | |
| !! | GGGTTGGTTCATAAATACGA+TGG | - | chr5_3:51545694-51545713 | Msa0816830:intron | 40.0% |
| !!! | TTTTGGCTTGTCCTAAATGG+TGG | + | chr5_3:51546254-51546273 | None:intergenic | 40.0% |
| !!! | TGCTTTTGGCTTGTCCTAAA+TGG | + | chr5_3:51546257-51546276 | None:intergenic | 40.0% |
| ATCATCCTTTGGATTCCCAT+AGG | - | chr5_3:51546365-51546384 | Msa0816830:intron | 40.0% | |
| AAAAGGTAAAATGGCTCCCA+AGG | + | chr5_3:51546417-51546436 | None:intergenic | 40.0% | |
| !! | TGGGAGCCATTTTACCTTTT+TGG | - | chr5_3:51546417-51546436 | Msa0816830:intron | 40.0% |
| !! | GGGAGCCATTTTACCTTTTT+GGG | - | chr5_3:51546418-51546437 | Msa0816830:intron | 40.0% |
| TGGTGGCAAAGTTATTGTGA+AGG | - | chr5_3:51546466-51546485 | Msa0816830:intron | 40.0% | |
| GGTGGCAAAGTTATTGTGAA+GGG | - | chr5_3:51546467-51546486 | Msa0816830:intron | 40.0% | |
| TACACACAAAAAGAACACCG+GGG | + | chr5_3:51546523-51546542 | None:intergenic | 40.0% | |
| GTACACACAAAAAGAACACC+GGG | + | chr5_3:51546524-51546543 | None:intergenic | 40.0% | |
| ! | TGGAGTTTTACGTTGAAGGA+CGG | + | chr5_3:51546582-51546601 | None:intergenic | 40.0% |
| GAAATAGAGTATGTTACCGC+TGG | + | chr5_3:51546602-51546621 | None:intergenic | 40.0% | |
| ACTCTATAGTTCATGGCAAC+CGG | + | chr5_3:51546815-51546834 | None:intergenic | 40.0% | |
| GTTGCCATGAACTATAGAGT+AGG | - | chr5_3:51546815-51546834 | Msa0816830:CDS | 40.0% | |
| GAACCCTACTCTATAGTTCA+TGG | + | chr5_3:51546822-51546841 | None:intergenic | 40.0% | |
| GGTTCATGAAGAAGAAAACC+GGG | + | chr5_3:51546883-51546902 | None:intergenic | 40.0% | |
| GGGTTCATGAAGAAGAAAAC+CGG | + | chr5_3:51546884-51546903 | None:intergenic | 40.0% | |
| ! | GTAACCTCATAAACTGGTCT+TGG | + | chr5_3:51546905-51546924 | None:intergenic | 40.0% |
| TACTTTCTTGAACCAGTTGC+CGG | - | chr5_3:51546922-51546941 | Msa0816830:CDS | 40.0% | |
| CATCGTGTCTTGTACTTCAT+TGG | - | chr5_3:51547084-51547103 | Msa0816830:CDS | 40.0% | |
| GGTTGATCAAGTAAAGAAGG+TGG | - | chr5_3:51547105-51547124 | Msa0816830:CDS | 40.0% | |
| CTTCATGTTAGTAGCGTTCG+AGG | - | chr5_3:51544698-51544717 | Msa0816830:three_prime_UTR | 45.0% | |
| AACGAAGCGAATCAAACCTG+AGG | + | chr5_3:51544724-51544743 | None:intergenic | 45.0% | |
| TAATCCTATGGCCCGTGATT+CGG | - | chr5_3:51544751-51544770 | Msa0816830:CDS | 45.0% | |
| ! | ATCTCTAGGAACCGAATCAC+GGG | + | chr5_3:51544765-51544784 | None:intergenic | 45.0% |
| ! | CATCTCTAGGAACCGAATCA+CGG | + | chr5_3:51544766-51544785 | None:intergenic | 45.0% |
| ATTCGGTTCCTAGAGATGCT+CGG | - | chr5_3:51544768-51544787 | Msa0816830:CDS | 45.0% | |
| ATGATCTTTGTAGCCGTAGC+CGG | - | chr5_3:51544816-51544835 | Msa0816830:CDS | 45.0% | |
| AACCTCTTCACCATAACTCC+TGG | + | chr5_3:51544969-51544988 | None:intergenic | 45.0% | |
| !! | CCATACCCAACTTTGGAACT+TGG | + | chr5_3:51545127-51545146 | None:intergenic | 45.0% |
| CCAAGTTCCAAAGTTGGGTA+TGG | - | chr5_3:51545124-51545143 | Msa0816830:CDS | 45.0% | |
| TTCCAAAGTTGGGTATGGCA+AGG | - | chr5_3:51545129-51545148 | Msa0816830:CDS | 45.0% | |
| TAAAGACTCTTTCACGGGGT+TGG | - | chr5_3:51545678-51545697 | Msa0816830:intron | 45.0% | |
| AAATACGATGGGGGAGAACT+TGG | - | chr5_3:51545706-51545725 | Msa0816830:intron | 45.0% | |
| AATACGATGGGGGAGAACTT+GGG | - | chr5_3:51545707-51545726 | Msa0816830:intron | 45.0% | |
| ! | GCTGGCTATCATTGTGCTTT+TGG | + | chr5_3:51546271-51546290 | None:intergenic | 45.0% |
| AGTAGGGAGGTTAATGGTGT+AGG | + | chr5_3:51546344-51546363 | None:intergenic | 45.0% | |
| CCAAAGGATGATTAGTAGGG+AGG | + | chr5_3:51546357-51546376 | None:intergenic | 45.0% | |
| CCTCCCTACTAATCATCCTT+TGG | - | chr5_3:51546354-51546373 | Msa0816830:intron | 45.0% | |
| ATGTGAGGAATGGCCCAAAA+AGG | + | chr5_3:51546434-51546453 | None:intergenic | 45.0% | |
| CCTTCAACGTAAAACTCCAG+CGG | - | chr5_3:51546583-51546602 | Msa0816830:intron | 45.0% | |
| TTAGTCTCACGGTAGGAATG+GGG | + | chr5_3:51546646-51546665 | None:intergenic | 45.0% | |
| ! | GTTAGTCTCACGGTAGGAAT+GGG | + | chr5_3:51546647-51546666 | None:intergenic | 45.0% |
| ACTAACCAGGATGCGAAATG+TGG | - | chr5_3:51546661-51546680 | Msa0816830:intron | 45.0% | |
| ACTCACAGATCGGATAGTAC+CGG | - | chr5_3:51546793-51546812 | Msa0816830:CDS | 45.0% | |
| GAACCCAAGACCAGTTTATG+AGG | - | chr5_3:51546898-51546917 | Msa0816830:CDS | 45.0% | |
| ACATAATTGGCCACATCGTG+TGG | + | chr5_3:51546977-51546996 | None:intergenic | 45.0% | |
| ! | AGGATATTGGCTGCAACTCT+AGG | - | chr5_3:51547001-51547020 | Msa0816830:CDS | 45.0% |
| ! | GGATATTGGCTGCAACTCTA+GGG | - | chr5_3:51547002-51547021 | Msa0816830:CDS | 45.0% |
| !! | AATTAATTTACTTTAAATAT+TGG | - | chr5_3:51546172-51546191 | Msa0816830:intron | 5.0% |
| !! | ATTAATTTACTTTAAATATT+GGG | - | chr5_3:51546173-51546192 | Msa0816830:intron | 5.0% |
| TGCCAGGAGTTATGGTGAAG+AGG | - | chr5_3:51544964-51544983 | Msa0816830:CDS | 50.0% | |
| AGCCTTGCCATACCCAACTT+TGG | + | chr5_3:51545134-51545153 | None:intergenic | 50.0% | |
| GGAAGATAACCGGATGAGGT+CGG | + | chr5_3:51546298-51546317 | None:intergenic | 50.0% | |
| TCGTGGAAGATAACCGGATG+AGG | + | chr5_3:51546302-51546321 | None:intergenic | 50.0% | |
| CATCCGGTTATCTTCCACGA+CGG | - | chr5_3:51546302-51546321 | Msa0816830:intron | 50.0% | |
| GTGTACTCACCGCACTCTAA+TGG | - | chr5_3:51546538-51546557 | Msa0816830:intron | 50.0% | |
| TACGTTGAAGGACGGAAGAG+AGG | + | chr5_3:51546574-51546593 | None:intergenic | 50.0% | |
| ! | CCGCTGGAGTTTTACGTTGA+AGG | + | chr5_3:51546586-51546605 | None:intergenic | 50.0% |
| TAGTCTCACGGTAGGAATGG+GGG | + | chr5_3:51546645-51546664 | None:intergenic | 50.0% | |
| !! | GGTTAGTCTCACGGTAGGAA+TGG | + | chr5_3:51546648-51546667 | None:intergenic | 50.0% |
| TTCCTACCGTGAGACTAACC+AGG | - | chr5_3:51546648-51546667 | Msa0816830:intron | 50.0% | |
| !! | ATCCTGGTTAGTCTCACGGT+AGG | + | chr5_3:51546653-51546672 | None:intergenic | 50.0% |
| !! | TCGCATCCTGGTTAGTCTCA+CGG | + | chr5_3:51546657-51546676 | None:intergenic | 50.0% |
| TCTTCCATGCAACCACTGCA+AGG | - | chr5_3:51546840-51546859 | Msa0816830:CDS | 50.0% | |
| CTTCCATGCAACCACTGCAA+GGG | - | chr5_3:51546841-51546860 | Msa0816830:CDS | 50.0% | |
| TTCCATGCAACCACTGCAAG+GGG | - | chr5_3:51546842-51546861 | Msa0816830:CDS | 50.0% | |
| GACGAACATGTGGCTTCAAC+CGG | + | chr5_3:51546944-51546963 | None:intergenic | 50.0% | |
| GTTGAAGCCACATGTTCGTC+CGG | - | chr5_3:51546944-51546963 | Msa0816830:CDS | 50.0% | |
| TTGAAGCCACATGTTCGTCC+GGG | - | chr5_3:51546945-51546964 | Msa0816830:CDS | 50.0% | |
| !!! | AGGGTTTTGGCTGGGAATGA+TGG | - | chr5_3:51547061-51547080 | Msa0816830:CDS | 50.0% |
| ! | ATGTAAGGGTGCAAGTGTGC+TGG | - | chr5_3:51547213-51547232 | Msa0816830:CDS | 50.0% |
| TTAGTAGCGTTCGAGGCCTC+AGG | - | chr5_3:51544705-51544724 | Msa0816830:three_prime_UTR | 55.0% | |
| GTTCCTAGAGATGCTCGGCA+TGG | - | chr5_3:51544773-51544792 | Msa0816830:CDS | 55.0% | |
| TATCTTCCACGACGGCCGAT+TGG | - | chr5_3:51546310-51546329 | Msa0816830:intron | 55.0% | |
| GTGTAGGCCGCTTCACCAAT+CGG | + | chr5_3:51546328-51546347 | None:intergenic | 55.0% | |
| CCACAGGGTCCATTAGAGTG+CGG | + | chr5_3:51546550-51546569 | None:intergenic | 55.0% | |
| AGCGTCCACATTTCGCATCC+TGG | + | chr5_3:51546669-51546688 | None:intergenic | 55.0% | |
| TCGCGACATGTCGTTCCTTC+TGG | + | chr5_3:51546737-51546756 | None:intergenic | 55.0% | |
| AACCCCTTGCAGTGGTTGCA+TGG | + | chr5_3:51546847-51546866 | None:intergenic | 55.0% | |
| ATGCAACCACTGCAAGGGGT+TGG | - | chr5_3:51546846-51546865 | Msa0816830:CDS | 55.0% | |
| AACCACTGCAAGGGGTTGGA+AGG | - | chr5_3:51546850-51546869 | Msa0816830:CDS | 55.0% | |
| ACCACTGCAAGGGGTTGGAA+GGG | - | chr5_3:51546851-51546870 | Msa0816830:CDS | 55.0% | |
| TGCAAGGGGTTGGAAGGGTT+TGG | - | chr5_3:51546856-51546875 | Msa0816830:CDS | 55.0% | |
| ATGTGGCTTCAACCGGCAAC+TGG | + | chr5_3:51546937-51546956 | None:intergenic | 55.0% | |
| ACTCTTCCCGGACGAACATG+TGG | + | chr5_3:51546954-51546973 | None:intergenic | 55.0% | |
| CACATCGTGTGGACTCTTCC+CGG | + | chr5_3:51546966-51546985 | None:intergenic | 55.0% | |
| GGAACCGAATCACGGGCCAT+AGG | + | chr5_3:51544758-51544777 | None:intergenic | 60.0% | |
| CCTCCATGCCGAGCATCTCT+AGG | + | chr5_3:51544779-51544798 | None:intergenic | 60.0% | |
| CCTAGAGATGCTCGGCATGG+AGG | - | chr5_3:51544776-51544795 | Msa0816830:CDS | 60.0% | |
| CCAGCTTCTCCGACCTCATC+CGG | - | chr5_3:51546286-51546305 | Msa0816830:intron | 60.0% | |
| CGGCCGTCGTGGAAGATAAC+CGG | + | chr5_3:51546308-51546327 | None:intergenic | 60.0% | |
| ACGACGGCCGATTGGTGAAG+CGG | - | chr5_3:51546318-51546337 | Msa0816830:intron | 60.0% | |
| ! | CCGCACTCTAATGGACCCTG+TGG | - | chr5_3:51546547-51546566 | Msa0816830:intron | 60.0% |
| GGACGGAAGAGAGGACCACA+GGG | + | chr5_3:51546565-51546584 | None:intergenic | 60.0% | |
| AGGACGGAAGAGAGGACCAC+AGG | + | chr5_3:51546566-51546585 | None:intergenic | 60.0% | |
| TCACGGTAGGAATGGGGGAG+AGG | + | chr5_3:51546640-51546659 | None:intergenic | 60.0% | |
| ACCCTTCCAACCCCTTGCAG+TGG | + | chr5_3:51546855-51546874 | None:intergenic | 60.0% | |
| GGGTTGGAAGGGTTTGGACC+CGG | - | chr5_3:51546862-51546881 | Msa0816830:CDS | 60.0% | |
| CGGGAAGAGTCCACACGATG+TGG | - | chr5_3:51546964-51546983 | Msa0816830:CDS | 60.0% | |
| CCGGATGAGGTCGGAGAAGC+TGG | + | chr5_3:51546289-51546308 | None:intergenic | 65.0% | |
| GCTTCACCAATCGGCCGTCG+TGG | + | chr5_3:51546319-51546338 | None:intergenic | 65.0% | |
| AAGAACACCGGGGCCGCCTG+CGG | + | chr5_3:51546513-51546532 | None:intergenic | 70.0% | |
| CCTGCGGAGGGAGGGAGAGG+TGG | + | chr5_3:51546497-51546516 | None:intergenic | 75.0% | |
| CCACCTCTCCCTCCCTCCGC+AGG | - | chr5_3:51546494-51546513 | Msa0816830:intron | 75.0% | |
| CCTCTCCCTCCCTCCGCAGG+CGG | - | chr5_3:51546497-51546516 | Msa0816830:intron | 75.0% | |
| ! | CCGCCTGCGGAGGGAGGGAG+AGG | + | chr5_3:51546500-51546519 | None:intergenic | 80.0% |
| ! | ACACCGGGGCCGCCTGCGGA+GGG | + | chr5_3:51546509-51546528 | None:intergenic | 80.0% |
| ! | AACACCGGGGCCGCCTGCGG+AGG | + | chr5_3:51546510-51546529 | None:intergenic | 80.0% |
| ! | CGGGGCCGCCTGCGGAGGGA+GGG | + | chr5_3:51546505-51546524 | None:intergenic | 85.0% |
| ! | CCTCCCTCCGCAGGCGGCCC+CGG | - | chr5_3:51546503-51546522 | Msa0816830:intron | 85.0% |
| ! | CCGGGGCCGCCTGCGGAGGG+AGG | + | chr5_3:51546506-51546525 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 51544556 | 51547350 | 51544556 | ID=Msa0816830;Name=Msa0816830 |
| chr5_3 | mRNA | 51544556 | 51547350 | 51544556 | ID=Msa0816830-mRNA-1;Parent=Msa0816830;Name=Msa0816830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=80|1|1|1|1|1|2|194|493 |
| chr5_3 | exon | 51544556 | 51545667 | 51544556 | ID=Msa0816830-mRNA-1:exon:15474;Parent=Msa0816830-mRNA-1 |
| chr5_3 | exon | 51546707 | 51547350 | 51546707 | ID=Msa0816830-mRNA-1:exon:15473;Parent=Msa0816830-mRNA-1 |
| chr5_3 | five_prime_UTR | 51547271 | 51547350 | 51547271 | ID=Msa0816830-mRNA-1:five_prime_utr;Parent=Msa0816830-mRNA-1 |
| chr5_3 | CDS | 51546707 | 51547270 | 51546707 | ID=Msa0816830-mRNA-1:cds;Parent=Msa0816830-mRNA-1 |
| chr5_3 | CDS | 51544750 | 51545667 | 51544750 | ID=Msa0816830-mRNA-1:cds;Parent=Msa0816830-mRNA-1 |
| chr5_3 | three_prime_UTR | 51544556 | 51544749 | 51544556 | ID=Msa0816830-mRNA-1:three_prime_utr;Parent=Msa0816830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
