AlfalfaGEDB | Msa0737690

M. sativa cultivar zhongmu-4 / Msa0737690

KEGG: K13508
GO: GO:0003674 GO:0003824 GO:0005575 GO:0006725 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009698 GO:0009699 GO:0009987 GO:0010143 GO:0010345 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0019438 GO:0019748 GO:0042578 GO:0043170 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:0090447 GO:1901360 GO:1901362 GO:1901576
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737690	XP_003616443.2	97.160	493	14	0	1	493	1	493	0.0	982

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737690	sp\|Q9CAY3\|GPAT5_ARATH	72.967	492	129	3	3	492	12	501	0.0	748

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737690	G7KGS4	97.160	493	14	0	1	493	1	493	0.0	982

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0041630	Msa0737690	0.804176	2.449938e-49	-8.615850e-47
Msa0389460	Msa0737690	0.832332	1.004299e-55	-8.615850e-47
Msa0457060	Msa0737690	0.809756	1.616766e-50	-8.615850e-47
Msa0457650	Msa0737690	0.804874	1.751932e-49	-8.615850e-47
Msa0612350	Msa0737690	0.814790	1.287247e-51	-8.615850e-47
Msa0737690	Msa0816830	0.911002	9.943084e-83	-8.615850e-47
Msa0737690	Msa0818720	0.829975	3.810867e-55	-8.615850e-47
Msa0737690	Msa0818760	0.834830	2.388615e-56	-8.615850e-47
Msa0737690	Msa0827870	0.830543	2.768474e-55	-8.615850e-47
Msa0737690	Msa0857030	0.989360	8.710917e-178	-8.615850e-47

Showing 1 to 10 of 13 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737690	MtrunA17_Chr5g0435581	97.160	493	14	0	1	493	1	493	0.0	982
Msa0737690	MtrunA17_Chr1g0170421	51.572	477	218	5	3	472	56	526	1.05e-166	484
Msa0737690	MtrunA17_Chr7g0241831	51.055	474	223	3	2	472	24	491	7.88e-162	468
Msa0737690	MtrunA17_Chr4g0005991	50.418	478	227	4	2	475	21	492	3.65e-158	458
Msa0737690	MtrunA17_Chr8g0348781	47.059	476	242	5	2	472	27	497	6.89e-146	427
Msa0737690	MtrunA17_Chr5g0443341	44.676	479	251	6	2	476	65	533	1.11e-139	412
Msa0737690	MtrunA17_Chr3g0096481	43.750	480	247	9	2	472	60	525	1.05e-130	389
Msa0737690	MtrunA17_Chr5g0425071	40.461	477	267	8	3	473	17	482	2.21e-118	356
Msa0737690	MtrunA17_Chr1g0194391	41.372	481	255	12	3	472	65	529	2.83e-116	353
Msa0737690	MtrunA17_Chr3g0096591	54.044	272	110	6	209	472	7	271	1.30e-91	280

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737690	AT3G11430.1	72.967	492	129	3	3	492	12	501	0.0	748
Msa0737690	AT5G06090.1	72.154	492	133	3	3	492	10	499	0.0	717
Msa0737690	AT2G38110.1	48.319	476	234	3	3	472	25	494	4.69e-147	430
Msa0737690	AT4G00400.1	46.541	477	245	6	2	473	22	493	1.24e-139	411
Msa0737690	AT1G01610.1	47.490	478	240	7	2	473	22	494	6.93e-138	407
Msa0737690	AT1G06520.1	43.320	494	244	9	2	472	104	584	3.10e-133	398
Msa0737690	AT3G11325.2	60.345	290	82	1	201	490	134	390	2.06e-117	351
Msa0737690	AT3G11325.2	56.190	105	46	0	12	116	9	113	1.30e-33	131
Msa0737690	AT3G11325.1	60.345	290	82	1	201	490	131	387	2.55e-117	350
Msa0737690	AT3G11325.1	56.190	105	46	0	12	116	6	110	1.21e-33	131

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 151 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAAATATAGGGTTT+TGG	0.322909	5_1:-55067283	Msa0737690:CDS
AAAAGGTAAAATGGCTCCCA+AGG	0.569333	5_1:+55067917	None:intergenic
AACAAATGCAACCACCATTT+AGG	0.356648	5_1:-55068091	Msa0737690:CDS
AACACCGGGGCCGCCTGCGG+AGG	0.495682	5_1:+55067824	None:intergenic
AACCACTGCAAGGGGTTGGA+AGG	0.523750	5_1:-55067481	Msa0737690:CDS
AACCCCTTGCAGTGGTTGCA+TGG	0.489933	5_1:+55067487	None:intergenic
AACCTCTTCACCATAACTCC+TGG	0.538516	5_1:+55069365	None:intergenic
AACGAAGCGAATCAAACCTG+AGG	0.685586	5_1:+55069610	None:intergenic
AAGAAAGTAACCTCATAAAC+TGG	0.410853	5_1:+55067423	None:intergenic
AAGAACACCGGGGCCGCCTG+CGG	0.582203	5_1:+55067821	None:intergenic

Showing 1 to 10 of 151 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATCTCCGATTTATGAATTC+CGG	+	chr5_1:55067278-55067297	None:intergenic	30.0%
TTTAGCAACTCTTTCAGAAA+CGG	+	chr5_1:55067533-55067552	None:intergenic	30.0%
AATAACCAAGTTCCAAAGTT+GGG	-	chr5_1:55067559-55067578	Msa0737690:CDS	30.0%
TTCATTGCAATTTCTCACTT+TGG	+	chr5_1:55067661-55067680	None:intergenic	30.0%
ATGACCGAACATAAAAGTAA+AGG	+	chr5_1:55067919-55067938	None:intergenic	30.0%
AATCCAAAGGATGATTAGTA+GGG	+	chr5_1:55068800-55068819	None:intergenic	30.0%
ATGGCTAGTAATATACCTAT+GGG	+	chr5_1:55068823-55068842	None:intergenic	30.0%
TATGGCTAGTAATATACCTA+TGG	+	chr5_1:55068824-55068843	None:intergenic	30.0%
ACAAACAACTAAATCTCCTT+TGG	+	chr5_1:55069154-55069173	None:intergenic	30.0%
AAGAAAGTAACCTCATAAAC+TGG	+	chr5_1:55069351-55069370	None:intergenic	30.0%

Showing 1 to 10 of 220 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	55066996	55069797	55066996	ID=Msa0737690;Name=Msa0737690
chr5_1	mRNA	55066996	55069797	55066996	ID=Msa0737690-mRNA-1;Parent=Msa0737690;Name=Msa0737690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=80\|1\|1\|1\|1\|1\|2\|201\|493
chr5_1	exon	55066996	55068114	55066996	ID=Msa0737690-mRNA-1:exon:15513;Parent=Msa0737690-mRNA-1
chr5_1	exon	55069154	55069797	55069154	ID=Msa0737690-mRNA-1:exon:15512;Parent=Msa0737690-mRNA-1
chr5_1	five_prime_UTR	55069718	55069797	55069718	ID=Msa0737690-mRNA-1:five_prime_utr;Parent=Msa0737690-mRNA-1
chr5_1	CDS	55069154	55069717	55069154	ID=Msa0737690-mRNA-1:cds;Parent=Msa0737690-mRNA-1
chr5_1	CDS	55067197	55068114	55067197	ID=Msa0737690-mRNA-1:cds;Parent=Msa0737690-mRNA-1
chr5_1	three_prime_UTR	55066996	55067196	55066996	ID=Msa0737690-mRNA-1:three_prime_utr;Parent=Msa0737690-mRNA-1

Gene Sequence

>Msa0737690

ATGGACTCAGTTGTCTCTGAATTAGAAGGCACACTTCTAAAAAACTCAGATGTATTCTCCTACTTCATGTTAGTAGCGTTCGAGGCCTCAGGTTTGATTCGCTTCGTTCTGCTATTAATCCTATGGCCCGTGATTCGGTTCCTAGAGATGCTCGGCATGGAGGACATAAGTCTCAAGCTAATGATCTTTGTAGCCGTAGCCGGAATTCATAAATCGGAGATTGAATCAGTTTCCAGAGCAGTTTTACCAAAATTCTTCATGGATGATCTTGACATGGAAGCTTGGAAGATTTTTAGCACTTATGAGAAAAGGGTTGTGGTAACAAAAATGCCAGGAGTTATGGTGAAGAGGTTTGTTGAGGAACATTTACGTGCAGATGAAGTAATTGGGAGTGAATTGGTTTTCAATAGGTTTGGTTTAGCTACAGGATTTGTTCAAAGTGAATCAATTACTTCCGTTTCTGAAAGAGTTGCTAAACTTTTCAATAACCAAGTTCCAAAGTTGGGTATGGCAAGGCTTAGTACTACTACATCAAGCAATCATTCTTTCTCCAAACTTTGCCAGGAACAAATGCAACCACCATTTAGGACAAGCCAAAAGCACAATGATAGCCAGCTTCTCCGACCTCATCCGGTTATCTTCCACGACGGCCGATTGGTGAAGCGGCCTACACCATTAACCTCCCTACTAATCATCCTTTGGATTCCCATAGGTATATTACTAGCCATAATCAGATTAACCTTGGGAGCCATTTTACCTTTTTGGGCCATTCCTCACATGTCAAGATTATTTGGTGGCAAAGTTATTGTGAAGGGAAAACCACCTCTCCCTCCCTCCGCAGGCGGCCCCGGTGTTCTTTTTGTGTGTACTCACCGCACTCTAATGGACCCTGTGGTCCTCTCTTCCGTCCTCCAACGTAAAACTCCAGCGGTAACATACTCTATTTCTCGGTTATCGGAAATCCTCTCCCCCATTCCTACCGTGAGACTAACCAGGATGCGAAATGTGGACGCTGAGAGAATAAAATATGAGTTATCCAAAGGAGATTTAGTTGTTTGTCCAGAAGGAACGACATGTCGCGAGCCTTTCCTTTTACGATTTAGTGCTCTATTTGCAGAACTCACAGATCGGATAGTACCGGTTGCCATGAACTATAGAGTAGGGTTCTTCCATGCAACCACTGCAAGGGGTTGGAAGGGTTTGGACCCGGTTTTCTTCTTCATGAACCCAAGACCAGTTTATGAGGTTACTTTCTTGAACCAGTTGCCGGTTGAAGCCACATGTTCGTCCGGGAAGAGTCCACACGATGTGGCCAATTATGTTCAAAGGATATTGGCTGCAACTCTAGGGTTTGAGTGCACTAACTTTACTCGAAAAGATAAATATAGGGTTTTGGCTGGGAATGATGGCATCGTGTCTTGTACTTCATTGGTTGATCAAGTAAAGAAGGTGGTGAGCACATTCAAGCCTTGTTTACCATAA

Protein sequence

>Msa0737690

MDSVVSELEGTLLKNSDVFSYFMLVAFEASGLIRFVLLLILWPVIRFLEMLGMEDISLKLMIFVAVAGIHKSEIESVSRAVLPKFFMDDLDMEAWKIFSTYEKRVVVTKMPGVMVKRFVEEHLRADEVIGSELVFNRFGLATGFVQSESITSVSERVAKLFNNQVPKLGMARLSTTTSSNHSFSKLCQEQMQPPFRTSQKHNDSQLLRPHPVIFHDGRLVKRPTPLTSLLIILWIPIGILLAIIRLTLGAILPFWAIPHMSRLFGGKVIVKGKPPLPPSAGGPGVLFVCTHRTLMDPVVLSSVLQRKTPAVTYSISRLSEILSPIPTVRLTRMRNVDAERIKYELSKGDLVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGLDPVFFFMNPRPVYEVTFLNQLPVEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGIVSCTSLVDQVKKVVSTFKPCLP*