Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737690 | XP_003616443.2 | 97.160 | 493 | 14 | 0 | 1 | 493 | 1 | 493 | 0.0 | 982 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737690 | sp|Q9CAY3|GPAT5_ARATH | 72.967 | 492 | 129 | 3 | 3 | 492 | 12 | 501 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737690 | G7KGS4 | 97.160 | 493 | 14 | 0 | 1 | 493 | 1 | 493 | 0.0 | 982 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041630 | Msa0737690 | 0.804176 | 2.449938e-49 | -8.615850e-47 |
| Msa0612350 | Msa0737690 | 0.814790 | 1.287247e-51 | -8.615850e-47 |
| Msa0737690 | Msa0816830 | 0.911002 | 9.943084e-83 | -8.615850e-47 |
| Msa0737690 | Msa0818720 | 0.829975 | 3.810867e-55 | -8.615850e-47 |
| Msa0737690 | Msa0818760 | 0.834830 | 2.388615e-56 | -8.615850e-47 |
| Msa0737690 | Msa0827870 | 0.830543 | 2.768474e-55 | -8.615850e-47 |
| Msa0737690 | Msa0857030 | 0.989360 | 8.710917e-178 | -8.615850e-47 |
| Msa0737690 | Msa1170890 | 0.824200 | 9.183765e-54 | -8.615850e-47 |
| Msa0737690 | Msa1321010 | 0.804599 | 1.999362e-49 | -8.615850e-47 |
| Msa0737690 | Msa1344450 | 0.800745 | 1.247571e-48 | -8.615850e-47 |
| Msa0389460 | Msa0737690 | 0.832332 | 1.004299e-55 | -8.615850e-47 |
| Msa0457060 | Msa0737690 | 0.809756 | 1.616766e-50 | -8.615850e-47 |
| Msa0457650 | Msa0737690 | 0.804874 | 1.751932e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737690 | MtrunA17_Chr5g0435581 | 97.160 | 493 | 14 | 0 | 1 | 493 | 1 | 493 | 0.0 | 982 |
| Msa0737690 | MtrunA17_Chr1g0170421 | 51.572 | 477 | 218 | 5 | 3 | 472 | 56 | 526 | 1.05e-166 | 484 |
| Msa0737690 | MtrunA17_Chr7g0241831 | 51.055 | 474 | 223 | 3 | 2 | 472 | 24 | 491 | 7.88e-162 | 468 |
| Msa0737690 | MtrunA17_Chr4g0005991 | 50.418 | 478 | 227 | 4 | 2 | 475 | 21 | 492 | 3.65e-158 | 458 |
| Msa0737690 | MtrunA17_Chr8g0348781 | 47.059 | 476 | 242 | 5 | 2 | 472 | 27 | 497 | 6.89e-146 | 427 |
| Msa0737690 | MtrunA17_Chr5g0443341 | 44.676 | 479 | 251 | 6 | 2 | 476 | 65 | 533 | 1.11e-139 | 412 |
| Msa0737690 | MtrunA17_Chr3g0096481 | 43.750 | 480 | 247 | 9 | 2 | 472 | 60 | 525 | 1.05e-130 | 389 |
| Msa0737690 | MtrunA17_Chr5g0425071 | 40.461 | 477 | 267 | 8 | 3 | 473 | 17 | 482 | 2.21e-118 | 356 |
| Msa0737690 | MtrunA17_Chr1g0194391 | 41.372 | 481 | 255 | 12 | 3 | 472 | 65 | 529 | 2.83e-116 | 353 |
| Msa0737690 | MtrunA17_Chr3g0096591 | 54.044 | 272 | 110 | 6 | 209 | 472 | 7 | 271 | 1.30e-91 | 280 |
| Msa0737690 | MtrunA17_Chr3g0096581 | 31.915 | 188 | 118 | 4 | 2 | 188 | 64 | 242 | 3.62e-27 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737690 | AT3G11430.1 | 72.967 | 492 | 129 | 3 | 3 | 492 | 12 | 501 | 0.0 | 748 |
| Msa0737690 | AT5G06090.1 | 72.154 | 492 | 133 | 3 | 3 | 492 | 10 | 499 | 0.0 | 717 |
| Msa0737690 | AT2G38110.1 | 48.319 | 476 | 234 | 3 | 3 | 472 | 25 | 494 | 4.69e-147 | 430 |
| Msa0737690 | AT4G00400.1 | 46.541 | 477 | 245 | 6 | 2 | 473 | 22 | 493 | 1.24e-139 | 411 |
| Msa0737690 | AT1G01610.1 | 47.490 | 478 | 240 | 7 | 2 | 473 | 22 | 494 | 6.93e-138 | 407 |
| Msa0737690 | AT1G06520.1 | 43.320 | 494 | 244 | 9 | 2 | 472 | 104 | 584 | 3.10e-133 | 398 |
| Msa0737690 | AT3G11325.2 | 60.345 | 290 | 82 | 1 | 201 | 490 | 134 | 390 | 2.06e-117 | 351 |
| Msa0737690 | AT3G11325.2 | 56.190 | 105 | 46 | 0 | 12 | 116 | 9 | 113 | 1.30e-33 | 131 |
| Msa0737690 | AT3G11325.1 | 60.345 | 290 | 82 | 1 | 201 | 490 | 131 | 387 | 2.55e-117 | 350 |
| Msa0737690 | AT3G11325.1 | 56.190 | 105 | 46 | 0 | 12 | 116 | 6 | 110 | 1.21e-33 | 131 |
| Msa0737690 | AT1G02390.1 | 41.988 | 493 | 246 | 15 | 3 | 472 | 52 | 527 | 1.26e-111 | 341 |
| Msa0737690 | AT4G01950.1 | 41.322 | 484 | 258 | 14 | 3 | 472 | 46 | 517 | 2.92e-108 | 332 |
| Msa0737690 | AT4G01950.2 | 41.513 | 489 | 250 | 15 | 3 | 472 | 74 | 545 | 6.63e-108 | 332 |
Find 151 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCACATGTCAAGATTATT+TGG | 0.150256 | 5_1:-55067885 | Msa0737690:CDS |
| CAATATCCTTTGAACATAAT+TGG | 0.202872 | 5_1:+55067344 | None:intergenic |
| GCTGGCTATCATTGTGCTTT+TGG | 0.221316 | 5_1:+55068063 | None:intergenic |
| AGATCATCCATGAAGAATTT+TGG | 0.231300 | 5_1:+55069449 | None:intergenic |
| TTACGTGCAGATGAAGTAAT+TGG | 0.248051 | 5_1:-55069329 | Msa0737690:CDS |
| TTACTCGAAAAGATAAATAT+AGG | 0.294416 | 5_1:-55067290 | Msa0737690:CDS |
| CAATTATGTTCAAAGGATAT+TGG | 0.310416 | 5_1:-55067343 | Msa0737690:CDS |
| TCCCAAGGTTAATCTGATTA+TGG | 0.312514 | 5_1:+55067932 | None:intergenic |
| ATACTCTATTTCTCGGTTAT+CGG | 0.316529 | 5_1:-55067721 | Msa0737690:CDS |
| ATAGAGCACTAAATCGTAAA+AGG | 0.319770 | 5_1:+55067568 | None:intergenic |
| TTATAGTACCTGGCAAAGTT+TGG | 0.321027 | 5_1:+55069145 | None:intergenic |
| TCGCGACATGTCGTTCCTTC+TGG | 0.322328 | 5_1:+55067597 | None:intergenic |
| AAAAGATAAATATAGGGTTT+TGG | 0.322909 | 5_1:-55067283 | Msa0737690:CDS |
| CCGCCTGCGGAGGGAGGGAG+AGG | 0.341597 | 5_1:+55067834 | None:intergenic |
| CCTCCCTACTAATCATCCTT+TGG | 0.351925 | 5_1:-55067977 | Msa0737690:CDS |
| TACTCGAAAAGATAAATATA+GGG | 0.353770 | 5_1:-55067289 | Msa0737690:CDS |
| CCTCCCTCCGCAGGCGGCCC+CGG | 0.355972 | 5_1:-55067828 | Msa0737690:CDS |
| AACAAATGCAACCACCATTT+AGG | 0.356648 | 5_1:-55068091 | Msa0737690:CDS |
| TGCAAGGGGTTGGAAGGGTT+TGG | 0.357093 | 5_1:-55067475 | Msa0737690:CDS |
| CATCGTGTCTTGTACTTCAT+TGG | 0.372552 | 5_1:-55067247 | Msa0737690:CDS |
| ATGATTAGTAGGGAGGTTAA+TGG | 0.373547 | 5_1:+55067984 | None:intergenic |
| CCATACCCAACTTTGGAACT+TGG | 0.375224 | 5_1:+55069207 | None:intergenic |
| GTGTACTCACCGCACTCTAA+TGG | 0.376230 | 5_1:-55067793 | Msa0737690:CDS |
| TAATCCTATGGCCCGTGATT+CGG | 0.383281 | 5_1:-55069580 | Msa0737690:CDS |
| ACAGAATATTGTTCATCTAA+TGG | 0.385742 | 5_1:-55069714 | Msa0737690:exon |
| TACTTTCTTGAACCAGTTGC+CGG | 0.390520 | 5_1:-55067409 | Msa0737690:CDS |
| AATAGGTTTGGTTTAGCTAC+AGG | 0.398808 | 5_1:-55069290 | Msa0737690:CDS |
| GACGAACATGTGGCTTCAAC+CGG | 0.402068 | 5_1:+55067390 | None:intergenic |
| ATGTGAGGAATGGCCCAAAA+AGG | 0.402197 | 5_1:+55067900 | None:intergenic |
| GTTAGTCTCACGGTAGGAAT+GGG | 0.403818 | 5_1:+55067687 | None:intergenic |
| AATCTCCGATTTATGAATTC+CGG | 0.404562 | 5_1:+55069496 | None:intergenic |
| GTAACCTCATAAACTGGTCT+TGG | 0.404829 | 5_1:+55067429 | None:intergenic |
| CCGGATGAGGTCGGAGAAGC+TGG | 0.406448 | 5_1:+55068045 | None:intergenic |
| AATAACCAAGTTCCAAAGTT+GGG | 0.409025 | 5_1:-55069212 | Msa0737690:CDS |
| TTCTTTCTCCAAACTTTGCC+AGG | 0.409775 | 5_1:-55069153 | Msa0737690:intron |
| ACAAACAACTAAATCTCCTT+TGG | 0.410080 | 5_1:+55067620 | None:intergenic |
| AGGATATTGGCTGCAACTCT+AGG | 0.410254 | 5_1:-55067330 | Msa0737690:CDS |
| AAGAAAGTAACCTCATAAAC+TGG | 0.410853 | 5_1:+55067423 | None:intergenic |
| TGAAGTAATTGGGAGTGAAT+TGG | 0.411804 | 5_1:-55069318 | Msa0737690:CDS |
| CTTCATGTTAGTAGCGTTCG+AGG | 0.429967 | 5_1:-55069633 | Msa0737690:CDS |
| AGCGTCCACATTTCGCATCC+TGG | 0.432122 | 5_1:+55067665 | None:intergenic |
| CGGGGCCGCCTGCGGAGGGA+GGG | 0.433345 | 5_1:+55067829 | None:intergenic |
| CCGGGGCCGCCTGCGGAGGG+AGG | 0.436986 | 5_1:+55067828 | None:intergenic |
| GAATCCAAAGGATGATTAGT+AGG | 0.437047 | 5_1:+55067973 | None:intergenic |
| GGGTTCATGAAGAAGAAAAC+CGG | 0.438572 | 5_1:+55067450 | None:intergenic |
| TATGGCTAGTAATATACCTA+TGG | 0.440019 | 5_1:+55067950 | None:intergenic |
| GGTTAGTCTCACGGTAGGAA+TGG | 0.440830 | 5_1:+55067686 | None:intergenic |
| AGCCTTGCCATACCCAACTT+TGG | 0.442432 | 5_1:+55069200 | None:intergenic |
| CAATAACCAAGTTCCAAAGT+TGG | 0.452601 | 5_1:-55069213 | Msa0737690:CDS |
| TAACCTCATAAACTGGTCTT+GGG | 0.452875 | 5_1:+55067430 | None:intergenic |
| CGGTAACATACTCTATTTCT+CGG | 0.456428 | 5_1:-55067728 | Msa0737690:CDS |
| CACATCGTGTGGACTCTTCC+CGG | 0.458052 | 5_1:+55067368 | None:intergenic |
| GAACCCAAGACCAGTTTATG+AGG | 0.459966 | 5_1:-55067433 | Msa0737690:CDS |
| ATGTGGCTTCAACCGGCAAC+TGG | 0.460408 | 5_1:+55067397 | None:intergenic |
| ACACCGGGGCCGCCTGCGGA+GGG | 0.460445 | 5_1:+55067825 | None:intergenic |
| TTAGTAGCGTTCGAGGCCTC+AGG | 0.462333 | 5_1:-55069626 | Msa0737690:CDS |
| CGGCCGTCGTGGAAGATAAC+CGG | 0.466207 | 5_1:+55068026 | None:intergenic |
| GAACCCTACTCTATAGTTCA+TGG | 0.467040 | 5_1:+55067512 | None:intergenic |
| GTTGAAGCCACATGTTCGTC+CGG | 0.467761 | 5_1:-55067387 | Msa0737690:CDS |
| TCGTTCTGCTATTAATCCTA+TGG | 0.468159 | 5_1:-55069592 | Msa0737690:CDS |
| ATTGGTTGATCAAGTAAAGA+AGG | 0.479552 | 5_1:-55067229 | Msa0737690:CDS |
| GATTTAGTTGTTTGTCCAGA+AGG | 0.481237 | 5_1:-55067612 | Msa0737690:CDS |
| GTGTAGGCCGCTTCACCAAT+CGG | 0.482482 | 5_1:+55068006 | None:intergenic |
| CGATTTATGAATTCCGGCTA+CGG | 0.482955 | 5_1:+55069502 | None:intergenic |
| ACTCTATAGTTCATGGCAAC+CGG | 0.483007 | 5_1:+55067519 | None:intergenic |
| CCAGCTTCTCCGACCTCATC+CGG | 0.484716 | 5_1:-55068045 | Msa0737690:CDS |
| AACCCCTTGCAGTGGTTGCA+TGG | 0.489933 | 5_1:+55067487 | None:intergenic |
| TACGTGCAGATGAAGTAATT+GGG | 0.490722 | 5_1:-55069328 | Msa0737690:CDS |
| CCACCTCTCCCTCCCTCCGC+AGG | 0.490767 | 5_1:-55067837 | Msa0737690:CDS |
| CACTTATGAGAAAAGGGTTG+TGG | 0.495510 | 5_1:-55069399 | Msa0737690:CDS |
| AACACCGGGGCCGCCTGCGG+AGG | 0.495682 | 5_1:+55067824 | None:intergenic |
| CCTCCATGCCGAGCATCTCT+AGG | 0.500161 | 5_1:+55069555 | None:intergenic |
| TCAGTTGTCTCTGAATTAGA+AGG | 0.500272 | 5_1:-55069689 | Msa0737690:CDS |
| TTTAGCAACTCTTTCAGAAA+CGG | 0.500932 | 5_1:+55069241 | None:intergenic |
| CGTAGCCGGAATTCATAAAT+CGG | 0.506588 | 5_1:-55069501 | Msa0737690:CDS |
| GGGTTGGAAGGGTTTGGACC+CGG | 0.513399 | 5_1:-55067469 | Msa0737690:CDS |
| GGTGGCAAAGTTATTGTGAA+GGG | 0.518531 | 5_1:-55067864 | Msa0737690:CDS |
| ATCTCTAGGAACCGAATCAC+GGG | 0.519411 | 5_1:+55069569 | None:intergenic |
| ATGATCTTTGTAGCCGTAGC+CGG | 0.521019 | 5_1:-55069515 | Msa0737690:CDS |
| TATCTTCCACGACGGCCGAT+TGG | 0.522796 | 5_1:-55068021 | Msa0737690:CDS |
| AACCACTGCAAGGGGTTGGA+AGG | 0.523750 | 5_1:-55067481 | Msa0737690:CDS |
| CCAAGTTCCAAAGTTGGGTA+TGG | 0.524716 | 5_1:-55069207 | Msa0737690:CDS |
| TATGGTGAAGAGGTTTGTTG+AGG | 0.528470 | 5_1:-55069357 | Msa0737690:CDS |
| AGCCATAATCAGATTAACCT+TGG | 0.529275 | 5_1:-55067934 | Msa0737690:CDS |
| GCCATAATCAGATTAACCTT+GGG | 0.530102 | 5_1:-55067933 | Msa0737690:CDS |
| CTTCCATGCAACCACTGCAA+GGG | 0.532313 | 5_1:-55067490 | Msa0737690:CDS |
| ATGCAACCACTGCAAGGGGT+TGG | 0.533517 | 5_1:-55067485 | Msa0737690:CDS |
| GGATATTGGCTGCAACTCTA+GGG | 0.537098 | 5_1:-55067329 | Msa0737690:CDS |
| CCTGCGGAGGGAGGGAGAGG+TGG | 0.537490 | 5_1:+55067837 | None:intergenic |
| AACCTCTTCACCATAACTCC+TGG | 0.538516 | 5_1:+55069365 | None:intergenic |
| GAACGCTACTAACATGAAGT+AGG | 0.542737 | 5_1:+55069637 | None:intergenic |
| GAAATAGAGTATGTTACCGC+TGG | 0.548665 | 5_1:+55067732 | None:intergenic |
| TGGTGGCAAAGTTATTGTGA+AGG | 0.548955 | 5_1:-55067865 | Msa0737690:CDS |
| ACCACTGCAAGGGGTTGGAA+GGG | 0.554018 | 5_1:-55067480 | Msa0737690:CDS |
| ACATAATTGGCCACATCGTG+TGG | 0.555416 | 5_1:+55067357 | None:intergenic |
| TCGCATCCTGGTTAGTCTCA+CGG | 0.556814 | 5_1:+55067677 | None:intergenic |
| ACGACGGCCGATTGGTGAAG+CGG | 0.557445 | 5_1:-55068013 | Msa0737690:CDS |
| ATGTAAGGGTGCAAGTGTGC+TGG | 0.558445 | 5_1:-55067118 | Msa0737690:three_prime_UTR |
| TTCCATGCAACCACTGCAAG+GGG | 0.559446 | 5_1:-55067489 | Msa0737690:CDS |
| CACATGTCAAGATTATTTGG+TGG | 0.561180 | 5_1:-55067882 | Msa0737690:CDS |
| GCACTAAATCGTAAAAGGAA+AGG | 0.562800 | 5_1:+55067573 | None:intergenic |
| TAATCTTGACATGTGAGGAA+TGG | 0.563106 | 5_1:+55067890 | None:intergenic |
| ATGTGGCCAATTATGTTCAA+AGG | 0.565821 | 5_1:-55067350 | Msa0737690:CDS |
| ATCATCCTTTGGATTCCCAT+AGG | 0.567783 | 5_1:-55067966 | Msa0737690:CDS |
| TGCCAGGAGTTATGGTGAAG+AGG | 0.568451 | 5_1:-55069367 | Msa0737690:CDS |
| ACCCTTCCAACCCCTTGCAG+TGG | 0.568618 | 5_1:+55067479 | None:intergenic |
| AAAAGGTAAAATGGCTCCCA+AGG | 0.569333 | 5_1:+55067917 | None:intergenic |
| GGAAGATAACCGGATGAGGT+CGG | 0.569958 | 5_1:+55068036 | None:intergenic |
| ATGATCTTGACATGGAAGCT+TGG | 0.575350 | 5_1:-55069433 | Msa0737690:CDS |
| TTGAAGCCACATGTTCGTCC+GGG | 0.575686 | 5_1:-55067386 | Msa0737690:CDS |
| TTCCAAAGTTGGGTATGGCA+AGG | 0.576401 | 5_1:-55069202 | Msa0737690:CDS |
| ATGGCTAGTAATATACCTAT+GGG | 0.576541 | 5_1:+55067951 | None:intergenic |
| TTGCCATGAACTATAGAGTA+GGG | 0.580288 | 5_1:-55067515 | Msa0737690:CDS |
| CTTCATGGATGATCTTGACA+TGG | 0.581073 | 5_1:-55069441 | Msa0737690:CDS |
| TCTTCCATGCAACCACTGCA+AGG | 0.581170 | 5_1:-55067491 | Msa0737690:CDS |
| AGTAGGGAGGTTAATGGTGT+AGG | 0.581490 | 5_1:+55067990 | None:intergenic |
| AAGAACACCGGGGCCGCCTG+CGG | 0.582203 | 5_1:+55067821 | None:intergenic |
| CATCTCTAGGAACCGAATCA+CGG | 0.582902 | 5_1:+55069568 | None:intergenic |
| TACGTTGGAGGACGGAAGAG+AGG | 0.586719 | 5_1:+55067760 | None:intergenic |
| AGGACGGAAGAGAGGACCAC+AGG | 0.587085 | 5_1:+55067768 | None:intergenic |
| GGAACCGAATCACGGGCCAT+AGG | 0.587795 | 5_1:+55069576 | None:intergenic |
| ATAAAATATGAGTTATCCAA+AGG | 0.588127 | 5_1:-55067636 | Msa0737690:CDS |
| GTTCCTAGAGATGCTCGGCA+TGG | 0.589970 | 5_1:-55069558 | Msa0737690:CDS |
| TCGTGGAAGATAACCGGATG+AGG | 0.592639 | 5_1:+55068032 | None:intergenic |
| AATCCAAAGGATGATTAGTA+GGG | 0.594053 | 5_1:+55067974 | None:intergenic |
| ACTAACCAGGATGCGAAATG+TGG | 0.596166 | 5_1:-55067670 | Msa0737690:CDS |
| ACTCTTCCCGGACGAACATG+TGG | 0.597450 | 5_1:+55067380 | None:intergenic |
| GCTTCACCAATCGGCCGTCG+TGG | 0.597938 | 5_1:+55068015 | None:intergenic |
| TTAGTCTCACGGTAGGAATG+GGG | 0.605101 | 5_1:+55067688 | None:intergenic |
| CCTCTCCCTCCCTCCGCAGG+CGG | 0.606101 | 5_1:-55067834 | Msa0737690:CDS |
| CCAAATAATCTTGACATGTG+AGG | 0.613846 | 5_1:+55067885 | None:intergenic |
| CCAAAGGATGATTAGTAGGG+AGG | 0.617133 | 5_1:+55067977 | None:intergenic |
| TAGTCTCACGGTAGGAATGG+GGG | 0.621006 | 5_1:+55067689 | None:intergenic |
| GATCATTATTATGGTAAACA+AGG | 0.622764 | 5_1:+55067189 | None:intergenic |
| ACTCACAGATCGGATAGTAC+CGG | 0.630574 | 5_1:-55067538 | Msa0737690:CDS |
| GGACGGAAGAGAGGACCACA+GGG | 0.633576 | 5_1:+55067769 | None:intergenic |
| TTCCTACCGTGAGACTAACC+AGG | 0.633579 | 5_1:-55067683 | Msa0737690:CDS |
| ATTCGGTTCCTAGAGATGCT+CGG | 0.633640 | 5_1:-55069563 | Msa0737690:CDS |
| GTTGCCATGAACTATAGAGT+AGG | 0.638820 | 5_1:-55067516 | Msa0737690:CDS |
| CGGGAAGAGTCCACACGATG+TGG | 0.640851 | 5_1:-55067367 | Msa0737690:CDS |
| GGTTCATGAAGAAGAAAACC+GGG | 0.655673 | 5_1:+55067451 | None:intergenic |
| TATTTGCAGAACTCACAGAT+CGG | 0.656460 | 5_1:-55067548 | Msa0737690:CDS |
| CATCCGGTTATCTTCCACGA+CGG | 0.663414 | 5_1:-55068029 | Msa0737690:CDS |
| ATATACCTATGGGAATCCAA+AGG | 0.666680 | 5_1:+55067961 | None:intergenic |
| CCTAGAGATGCTCGGCATGG+AGG | 0.670608 | 5_1:-55069555 | Msa0737690:CDS |
| GGTTGATCAAGTAAAGAAGG+TGG | 0.673976 | 5_1:-55067226 | Msa0737690:CDS |
| ATCCTGGTTAGTCTCACGGT+AGG | 0.682353 | 5_1:+55067681 | None:intergenic |
| AACGAAGCGAATCAAACCTG+AGG | 0.685586 | 5_1:+55069610 | None:intergenic |
| CCACAGGGTCCATTAGAGTG+CGG | 0.712721 | 5_1:+55067784 | None:intergenic |
| CCTCCAACGTAAAACTCCAG+CGG | 0.722705 | 5_1:-55067748 | Msa0737690:CDS |
| CCGCACTCTAATGGACCCTG+TGG | 0.755400 | 5_1:-55067784 | Msa0737690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTTTTTTTTTTATTAG+TGG | - | chr5_1:55068172-55068191 | Msa0737690:intron | 10.0% |
| !!! | TATTTCAACGAATAATTTTT+TGG | - | chr5_1:55067715-55067734 | Msa0737690:CDS | 15.0% |
| !! | GAAACATATTTAAAAAAAGA+CGG | + | chr5_1:55067802-55067821 | None:intergenic | 15.0% |
| !! | AATAGATTAAAAAGAATACA+CGG | + | chr5_1:55068267-55068286 | None:intergenic | 15.0% |
| !!! | TTCTGTTTCTTTAATTTTTT+CGG | - | chr5_1:55069720-55069739 | Msa0737690:five_prime_UTR | 15.0% |
| !! | GTTAAATAAATTATAGTACC+TGG | + | chr5_1:55067639-55067658 | None:intergenic | 20.0% |
| !! | ATGAATGAAAAAATTCGATT+TGG | - | chr5_1:55067676-55067695 | Msa0737690:CDS | 20.0% |
| !!! | TTTTTCTCAAAATTGTCATT+TGG | - | chr5_1:55067767-55067786 | Msa0737690:CDS | 20.0% |
| !!! | ATTGTATACGAACAAATTTT+GGG | + | chr5_1:55067891-55067910 | None:intergenic | 20.0% |
| !!! | AATTGTATACGAACAAATTT+TGG | + | chr5_1:55067892-55067911 | None:intergenic | 20.0% |
| !!! | AGAAACAAAATTTTATTCCA+AGG | - | chr5_1:55068060-55068079 | Msa0737690:CDS | 20.0% |
| !! | ATAGATTAAAAAGAATACAC+GGG | + | chr5_1:55068266-55068285 | None:intergenic | 20.0% |
| !! | TAAATAGACTCGAAAATTAT+GGG | + | chr5_1:55068362-55068381 | None:intergenic | 20.0% |
| !! | CTTATAAGAAACAACAAAAT+TGG | + | chr5_1:55068438-55068457 | None:intergenic | 20.0% |
| !! | ATAAAATATGAGTTATCCAA+AGG | - | chr5_1:55069135-55069154 | Msa0737690:intron | 20.0% |
| !! | TTACTCGAAAAGATAAATAT+AGG | - | chr5_1:55069481-55069500 | Msa0737690:CDS | 20.0% |
| !! | TACTCGAAAAGATAAATATA+GGG | - | chr5_1:55069482-55069501 | Msa0737690:CDS | 20.0% |
| !!! | AAAAGATAAATATAGGGTTT+TGG | - | chr5_1:55069488-55069507 | Msa0737690:CDS | 20.0% |
| !!! | ATTTTGTACGATCATTATTA+TGG | + | chr5_1:55069594-55069613 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTGTATGTATGTA+AGG | - | chr5_1:55069638-55069657 | Msa0737690:CDS | 20.0% |
| !!! | TTTTGTTTGTATGTATGTAA+GGG | - | chr5_1:55069639-55069658 | Msa0737690:CDS | 20.0% |
| !!! | TCTGTTTCTTTAATTTTTTC+GGG | - | chr5_1:55069721-55069740 | Msa0737690:five_prime_UTR | 20.0% |
| ! | ACAGAATATTGTTCATCTAA+TGG | - | chr5_1:55067057-55067076 | Msa0737690:three_prime_UTR | 25.0% |
| !! | AGTTTTACCAAAATTCTTCA+TGG | - | chr5_1:55067315-55067334 | Msa0737690:CDS | 25.0% |
| !!! | TTTTTAGCACTTATGAGAAA+AGG | - | chr5_1:55067365-55067384 | Msa0737690:CDS | 25.0% |
| !! | TTTTAGCACTTATGAGAAAA+GGG | - | chr5_1:55067366-55067385 | Msa0737690:CDS | 25.0% |
| !!! | TTTGCCTTTACTTTTATGTT+CGG | - | chr5_1:55067912-55067931 | Msa0737690:CDS | 25.0% |
| ! | TTAAGTGTAAGTATTCCAAA+AGG | - | chr5_1:55067987-55068006 | Msa0737690:CDS | 25.0% |
| ! | TAAGTGTAAGTATTCCAAAA+GGG | - | chr5_1:55067988-55068007 | Msa0737690:CDS | 25.0% |
| ! | ACAACTATAAGCCATATTAT+AGG | + | chr5_1:55068021-55068040 | None:intergenic | 25.0% |
| ! | TAATATGGCTTATAGTTGTT+TGG | - | chr5_1:55068022-55068041 | Msa0737690:CDS | 25.0% |
| !!! | TATGGGTTAAATACGTTTTT+TGG | + | chr5_1:55068345-55068364 | None:intergenic | 25.0% |
| ! | GTAAATAGACTCGAAAATTA+TGG | + | chr5_1:55068363-55068382 | None:intergenic | 25.0% |
| !!! | ACAAGATTTTGATACTAAAC+AGG | + | chr5_1:55068385-55068404 | None:intergenic | 25.0% |
| ! | CAATATCCTTTGAACATAAT+TGG | + | chr5_1:55069430-55069449 | None:intergenic | 25.0% |
| ! | CAATTATGTTCAAAGGATAT+TGG | - | chr5_1:55069428-55069447 | Msa0737690:CDS | 25.0% |
| ! | GATCATTATTATGGTAAACA+AGG | + | chr5_1:55069585-55069604 | None:intergenic | 25.0% |
| !!! | CTGTTTCTTTAATTTTTTCG+GGG | - | chr5_1:55069722-55069741 | Msa0737690:five_prime_UTR | 25.0% |
| AATCTCCGATTTATGAATTC+CGG | + | chr5_1:55067278-55067297 | None:intergenic | 30.0% | |
| ! | AGATCATCCATGAAGAATTT+TGG | + | chr5_1:55067325-55067344 | None:intergenic | 30.0% |
| !!! | GAATTGGTTTTCAATAGGTT+TGG | - | chr5_1:55067469-55067488 | Msa0737690:CDS | 30.0% |
| TTTAGCAACTCTTTCAGAAA+CGG | + | chr5_1:55067533-55067552 | None:intergenic | 30.0% | |
| AATAACCAAGTTCCAAAGTT+GGG | - | chr5_1:55067559-55067578 | Msa0737690:CDS | 30.0% | |
| TTCATTGCAATTTCTCACTT+TGG | + | chr5_1:55067661-55067680 | None:intergenic | 30.0% | |
| ATGACCGAACATAAAAGTAA+AGG | + | chr5_1:55067919-55067938 | None:intergenic | 30.0% | |
| AATCCAAAGGATGATTAGTA+GGG | + | chr5_1:55068800-55068819 | None:intergenic | 30.0% | |
| ATGGCTAGTAATATACCTAT+GGG | + | chr5_1:55068823-55068842 | None:intergenic | 30.0% | |
| TATGGCTAGTAATATACCTA+TGG | + | chr5_1:55068824-55068843 | None:intergenic | 30.0% | |
| ! | ATACTCTATTTCTCGGTTAT+CGG | - | chr5_1:55069050-55069069 | Msa0737690:intron | 30.0% |
| ACAAACAACTAAATCTCCTT+TGG | + | chr5_1:55069154-55069173 | None:intergenic | 30.0% | |
| ! | ATAGAGCACTAAATCGTAAA+AGG | + | chr5_1:55069206-55069225 | None:intergenic | 30.0% |
| AAGAAAGTAACCTCATAAAC+TGG | + | chr5_1:55069351-55069370 | None:intergenic | 30.0% | |
| !!! | ATAAATATAGGGTTTTGGCT+GGG | - | chr5_1:55069493-55069512 | Msa0737690:CDS | 30.0% |
| ATTGGTTGATCAAGTAAAGA+AGG | - | chr5_1:55069542-55069561 | Msa0737690:CDS | 30.0% | |
| TCAGTTGTCTCTGAATTAGA+AGG | - | chr5_1:55067082-55067101 | Msa0737690:three_prime_UTR | 35.0% | |
| TCGTTCTGCTATTAATCCTA+TGG | - | chr5_1:55067179-55067198 | Msa0737690:exon | 35.0% | |
| !! | GAATTTTGGTAAAACTGCTC+TGG | + | chr5_1:55067311-55067330 | None:intergenic | 35.0% |
| AACAAAAATGCCAGGAGTTA+TGG | - | chr5_1:55067396-55067415 | Msa0737690:CDS | 35.0% | |
| TTACGTGCAGATGAAGTAAT+TGG | - | chr5_1:55067442-55067461 | Msa0737690:CDS | 35.0% | |
| TACGTGCAGATGAAGTAATT+GGG | - | chr5_1:55067443-55067462 | Msa0737690:CDS | 35.0% | |
| TGAAGTAATTGGGAGTGAAT+TGG | - | chr5_1:55067453-55067472 | Msa0737690:CDS | 35.0% | |
| !!! | GGAGTGAATTGGTTTTCAAT+AGG | - | chr5_1:55067464-55067483 | Msa0737690:CDS | 35.0% |
| ! | AATAGGTTTGGTTTAGCTAC+AGG | - | chr5_1:55067481-55067500 | Msa0737690:CDS | 35.0% |
| CAATAACCAAGTTCCAAAGT+TGG | - | chr5_1:55067558-55067577 | Msa0737690:CDS | 35.0% | |
| TTATAGTACCTGGCAAAGTT+TGG | + | chr5_1:55067629-55067648 | None:intergenic | 35.0% | |
| ! | TTATAGGAAGTTCACCCTTT+TGG | + | chr5_1:55068005-55068024 | None:intergenic | 35.0% |
| AGGGTGAACTTCCTATAATA+TGG | - | chr5_1:55068007-55068026 | Msa0737690:CDS | 35.0% | |
| !! | TTATAGTTGTTTGGTGCTTG+TGG | - | chr5_1:55068031-55068050 | Msa0737690:CDS | 35.0% |
| CTCAGATAAAGACTCTTTCA+CGG | - | chr5_1:55068112-55068131 | Msa0737690:intron | 35.0% | |
| TCAGATAAAGACTCTTTCAC+GGG | - | chr5_1:55068113-55068132 | Msa0737690:intron | 35.0% | |
| ! | GGTTGGTTCATAAATACGAT+GGG | - | chr5_1:55068135-55068154 | Msa0737690:intron | 35.0% |
| ! | GTTGGTTCATAAATACGATG+GGG | - | chr5_1:55068136-55068155 | Msa0737690:intron | 35.0% |
| TTGGTTCATAAATACGATGG+GGG | - | chr5_1:55068137-55068156 | Msa0737690:intron | 35.0% | |
| ! | GACATATTTTGTATGTGTGC+AGG | - | chr5_1:55068657-55068676 | Msa0737690:intron | 35.0% |
| AACAAATGCAACCACCATTT+AGG | - | chr5_1:55068680-55068699 | Msa0737690:intron | 35.0% | |
| ATGATTAGTAGGGAGGTTAA+TGG | + | chr5_1:55068790-55068809 | None:intergenic | 35.0% | |
| GAATCCAAAGGATGATTAGT+AGG | + | chr5_1:55068801-55068820 | None:intergenic | 35.0% | |
| ATATACCTATGGGAATCCAA+AGG | + | chr5_1:55068813-55068832 | None:intergenic | 35.0% | |
| AGCCATAATCAGATTAACCT+TGG | - | chr5_1:55068837-55068856 | Msa0737690:intron | 35.0% | |
| GCCATAATCAGATTAACCTT+GGG | - | chr5_1:55068838-55068857 | Msa0737690:intron | 35.0% | |
| TCCCAAGGTTAATCTGATTA+TGG | + | chr5_1:55068842-55068861 | None:intergenic | 35.0% | |
| AATGGCCCAAAAAGGTAAAA+TGG | + | chr5_1:55068866-55068885 | None:intergenic | 35.0% | |
| TAATCTTGACATGTGAGGAA+TGG | + | chr5_1:55068884-55068903 | None:intergenic | 35.0% | |
| CCAAATAATCTTGACATGTG+AGG | + | chr5_1:55068889-55068908 | None:intergenic | 35.0% | |
| CCTCACATGTCAAGATTATT+TGG | - | chr5_1:55068886-55068905 | Msa0737690:intron | 35.0% | |
| CACATGTCAAGATTATTTGG+TGG | - | chr5_1:55068889-55068908 | Msa0737690:intron | 35.0% | |
| AGTACACACAAAAAGAACAC+CGG | + | chr5_1:55068965-55068984 | None:intergenic | 35.0% | |
| ! | CGGTAACATACTCTATTTCT+CGG | - | chr5_1:55069043-55069062 | Msa0737690:intron | 35.0% |
| GATTTAGTTGTTTGTCCAGA+AGG | - | chr5_1:55069159-55069178 | Msa0737690:CDS | 35.0% | |
| GCACTAAATCGTAAAAGGAA+AGG | + | chr5_1:55069201-55069220 | None:intergenic | 35.0% | |
| TATTTGCAGAACTCACAGAT+CGG | - | chr5_1:55069223-55069242 | Msa0737690:CDS | 35.0% | |
| TTGCCATGAACTATAGAGTA+GGG | - | chr5_1:55069256-55069275 | Msa0737690:CDS | 35.0% | |
| !! | TAACCTCATAAACTGGTCTT+GGG | + | chr5_1:55069344-55069363 | None:intergenic | 35.0% |
| ATGTGGCCAATTATGTTCAA+AGG | - | chr5_1:55069421-55069440 | Msa0737690:CDS | 35.0% | |
| !! | GATAAATATAGGGTTTTGGC+TGG | - | chr5_1:55069492-55069511 | Msa0737690:CDS | 35.0% |
| GAACGCTACTAACATGAAGT+AGG | + | chr5_1:55067137-55067156 | None:intergenic | 40.0% | |
| CGATTTATGAATTCCGGCTA+CGG | + | chr5_1:55067272-55067291 | None:intergenic | 40.0% | |
| CGTAGCCGGAATTCATAAAT+CGG | - | chr5_1:55067270-55067289 | Msa0737690:CDS | 40.0% | |
| CTTCATGGATGATCTTGACA+TGG | - | chr5_1:55067330-55067349 | Msa0737690:CDS | 40.0% | |
| ATGATCTTGACATGGAAGCT+TGG | - | chr5_1:55067338-55067357 | Msa0737690:CDS | 40.0% | |
| CACTTATGAGAAAAGGGTTG+TGG | - | chr5_1:55067372-55067391 | Msa0737690:CDS | 40.0% | |
| GTTGTGGTAACAAAAATGCC+AGG | - | chr5_1:55067388-55067407 | Msa0737690:CDS | 40.0% | |
| !! | TATGGTGAAGAGGTTTGTTG+AGG | - | chr5_1:55067414-55067433 | Msa0737690:CDS | 40.0% |
| TTCTTTCTCCAAACTTTGCC+AGG | - | chr5_1:55067618-55067637 | Msa0737690:CDS | 40.0% | |
| TGATGTTTGCATGTTCACCT+TGG | + | chr5_1:55068080-55068099 | None:intergenic | 40.0% | |
| CAGATAAAGACTCTTTCACG+GGG | - | chr5_1:55068114-55068133 | Msa0737690:intron | 40.0% | |
| !! | GGGTTGGTTCATAAATACGA+TGG | - | chr5_1:55068134-55068153 | Msa0737690:intron | 40.0% |
| !!! | TTTTGGCTTGTCCTAAATGG+TGG | + | chr5_1:55068694-55068713 | None:intergenic | 40.0% |
| !!! | TGCTTTTGGCTTGTCCTAAA+TGG | + | chr5_1:55068697-55068716 | None:intergenic | 40.0% |
| ATCATCCTTTGGATTCCCAT+AGG | - | chr5_1:55068805-55068824 | Msa0737690:intron | 40.0% | |
| AAAAGGTAAAATGGCTCCCA+AGG | + | chr5_1:55068857-55068876 | None:intergenic | 40.0% | |
| !! | TGGGAGCCATTTTACCTTTT+TGG | - | chr5_1:55068857-55068876 | Msa0737690:intron | 40.0% |
| !! | GGGAGCCATTTTACCTTTTT+GGG | - | chr5_1:55068858-55068877 | Msa0737690:intron | 40.0% |
| TGGTGGCAAAGTTATTGTGA+AGG | - | chr5_1:55068906-55068925 | Msa0737690:intron | 40.0% | |
| GGTGGCAAAGTTATTGTGAA+GGG | - | chr5_1:55068907-55068926 | Msa0737690:intron | 40.0% | |
| TACACACAAAAAGAACACCG+GGG | + | chr5_1:55068963-55068982 | None:intergenic | 40.0% | |
| GTACACACAAAAAGAACACC+GGG | + | chr5_1:55068964-55068983 | None:intergenic | 40.0% | |
| GAAATAGAGTATGTTACCGC+TGG | + | chr5_1:55069042-55069061 | None:intergenic | 40.0% | |
| ACTCTATAGTTCATGGCAAC+CGG | + | chr5_1:55069255-55069274 | None:intergenic | 40.0% | |
| GTTGCCATGAACTATAGAGT+AGG | - | chr5_1:55069255-55069274 | Msa0737690:CDS | 40.0% | |
| GAACCCTACTCTATAGTTCA+TGG | + | chr5_1:55069262-55069281 | None:intergenic | 40.0% | |
| GGTTCATGAAGAAGAAAACC+GGG | + | chr5_1:55069323-55069342 | None:intergenic | 40.0% | |
| GGGTTCATGAAGAAGAAAAC+CGG | + | chr5_1:55069324-55069343 | None:intergenic | 40.0% | |
| ! | GTAACCTCATAAACTGGTCT+TGG | + | chr5_1:55069345-55069364 | None:intergenic | 40.0% |
| TACTTTCTTGAACCAGTTGC+CGG | - | chr5_1:55069362-55069381 | Msa0737690:CDS | 40.0% | |
| CATCGTGTCTTGTACTTCAT+TGG | - | chr5_1:55069524-55069543 | Msa0737690:CDS | 40.0% | |
| GGTTGATCAAGTAAAGAAGG+TGG | - | chr5_1:55069545-55069564 | Msa0737690:CDS | 40.0% | |
| CTTCATGTTAGTAGCGTTCG+AGG | - | chr5_1:55067138-55067157 | Msa0737690:three_prime_UTR | 45.0% | |
| AACGAAGCGAATCAAACCTG+AGG | + | chr5_1:55067164-55067183 | None:intergenic | 45.0% | |
| TAATCCTATGGCCCGTGATT+CGG | - | chr5_1:55067191-55067210 | Msa0737690:exon | 45.0% | |
| ! | ATCTCTAGGAACCGAATCAC+GGG | + | chr5_1:55067205-55067224 | None:intergenic | 45.0% |
| ! | CATCTCTAGGAACCGAATCA+CGG | + | chr5_1:55067206-55067225 | None:intergenic | 45.0% |
| ATTCGGTTCCTAGAGATGCT+CGG | - | chr5_1:55067208-55067227 | Msa0737690:CDS | 45.0% | |
| ATGATCTTTGTAGCCGTAGC+CGG | - | chr5_1:55067256-55067275 | Msa0737690:CDS | 45.0% | |
| AACCTCTTCACCATAACTCC+TGG | + | chr5_1:55067409-55067428 | None:intergenic | 45.0% | |
| !! | CCATACCCAACTTTGGAACT+TGG | + | chr5_1:55067567-55067586 | None:intergenic | 45.0% |
| CCAAGTTCCAAAGTTGGGTA+TGG | - | chr5_1:55067564-55067583 | Msa0737690:CDS | 45.0% | |
| TTCCAAAGTTGGGTATGGCA+AGG | - | chr5_1:55067569-55067588 | Msa0737690:CDS | 45.0% | |
| TAAAGACTCTTTCACGGGGT+TGG | - | chr5_1:55068118-55068137 | Msa0737690:intron | 45.0% | |
| AAATACGATGGGGGAGAACT+TGG | - | chr5_1:55068146-55068165 | Msa0737690:intron | 45.0% | |
| AATACGATGGGGGAGAACTT+GGG | - | chr5_1:55068147-55068166 | Msa0737690:intron | 45.0% | |
| ! | GCTGGCTATCATTGTGCTTT+TGG | + | chr5_1:55068711-55068730 | None:intergenic | 45.0% |
| AGTAGGGAGGTTAATGGTGT+AGG | + | chr5_1:55068784-55068803 | None:intergenic | 45.0% | |
| CCAAAGGATGATTAGTAGGG+AGG | + | chr5_1:55068797-55068816 | None:intergenic | 45.0% | |
| CCTCCCTACTAATCATCCTT+TGG | - | chr5_1:55068794-55068813 | Msa0737690:intron | 45.0% | |
| ATGTGAGGAATGGCCCAAAA+AGG | + | chr5_1:55068874-55068893 | None:intergenic | 45.0% | |
| ! | TGGAGTTTTACGTTGGAGGA+CGG | + | chr5_1:55069022-55069041 | None:intergenic | 45.0% |
| ! | TTACCGCTGGAGTTTTACGT+TGG | + | chr5_1:55069029-55069048 | None:intergenic | 45.0% |
| TTAGTCTCACGGTAGGAATG+GGG | + | chr5_1:55069086-55069105 | None:intergenic | 45.0% | |
| ! | GTTAGTCTCACGGTAGGAAT+GGG | + | chr5_1:55069087-55069106 | None:intergenic | 45.0% |
| ACTAACCAGGATGCGAAATG+TGG | - | chr5_1:55069101-55069120 | Msa0737690:intron | 45.0% | |
| ACTCACAGATCGGATAGTAC+CGG | - | chr5_1:55069233-55069252 | Msa0737690:CDS | 45.0% | |
| GAACCCAAGACCAGTTTATG+AGG | - | chr5_1:55069338-55069357 | Msa0737690:CDS | 45.0% | |
| ACATAATTGGCCACATCGTG+TGG | + | chr5_1:55069417-55069436 | None:intergenic | 45.0% | |
| ! | AGGATATTGGCTGCAACTCT+AGG | - | chr5_1:55069441-55069460 | Msa0737690:CDS | 45.0% |
| ! | GGATATTGGCTGCAACTCTA+GGG | - | chr5_1:55069442-55069461 | Msa0737690:CDS | 45.0% |
| !! | AATTAATTTACTTTAAATAT+TGG | - | chr5_1:55068612-55068631 | Msa0737690:intron | 5.0% |
| !! | ATTAATTTACTTTAAATATT+GGG | - | chr5_1:55068613-55068632 | Msa0737690:intron | 5.0% |
| TGCCAGGAGTTATGGTGAAG+AGG | - | chr5_1:55067404-55067423 | Msa0737690:CDS | 50.0% | |
| AGCCTTGCCATACCCAACTT+TGG | + | chr5_1:55067574-55067593 | None:intergenic | 50.0% | |
| GGAAGATAACCGGATGAGGT+CGG | + | chr5_1:55068738-55068757 | None:intergenic | 50.0% | |
| TCGTGGAAGATAACCGGATG+AGG | + | chr5_1:55068742-55068761 | None:intergenic | 50.0% | |
| CATCCGGTTATCTTCCACGA+CGG | - | chr5_1:55068742-55068761 | Msa0737690:intron | 50.0% | |
| GTGTACTCACCGCACTCTAA+TGG | - | chr5_1:55068978-55068997 | Msa0737690:intron | 50.0% | |
| CCTCCAACGTAAAACTCCAG+CGG | - | chr5_1:55069023-55069042 | Msa0737690:intron | 50.0% | |
| TAGTCTCACGGTAGGAATGG+GGG | + | chr5_1:55069085-55069104 | None:intergenic | 50.0% | |
| !! | GGTTAGTCTCACGGTAGGAA+TGG | + | chr5_1:55069088-55069107 | None:intergenic | 50.0% |
| TTCCTACCGTGAGACTAACC+AGG | - | chr5_1:55069088-55069107 | Msa0737690:intron | 50.0% | |
| !! | ATCCTGGTTAGTCTCACGGT+AGG | + | chr5_1:55069093-55069112 | None:intergenic | 50.0% |
| !! | TCGCATCCTGGTTAGTCTCA+CGG | + | chr5_1:55069097-55069116 | None:intergenic | 50.0% |
| TCTTCCATGCAACCACTGCA+AGG | - | chr5_1:55069280-55069299 | Msa0737690:CDS | 50.0% | |
| CTTCCATGCAACCACTGCAA+GGG | - | chr5_1:55069281-55069300 | Msa0737690:CDS | 50.0% | |
| TTCCATGCAACCACTGCAAG+GGG | - | chr5_1:55069282-55069301 | Msa0737690:CDS | 50.0% | |
| GACGAACATGTGGCTTCAAC+CGG | + | chr5_1:55069384-55069403 | None:intergenic | 50.0% | |
| GTTGAAGCCACATGTTCGTC+CGG | - | chr5_1:55069384-55069403 | Msa0737690:CDS | 50.0% | |
| TTGAAGCCACATGTTCGTCC+GGG | - | chr5_1:55069385-55069404 | Msa0737690:CDS | 50.0% | |
| !!! | AGGGTTTTGGCTGGGAATGA+TGG | - | chr5_1:55069501-55069520 | Msa0737690:CDS | 50.0% |
| ! | ATGTAAGGGTGCAAGTGTGC+TGG | - | chr5_1:55069653-55069672 | Msa0737690:CDS | 50.0% |
| TTAGTAGCGTTCGAGGCCTC+AGG | - | chr5_1:55067145-55067164 | Msa0737690:three_prime_UTR | 55.0% | |
| GTTCCTAGAGATGCTCGGCA+TGG | - | chr5_1:55067213-55067232 | Msa0737690:CDS | 55.0% | |
| TATCTTCCACGACGGCCGAT+TGG | - | chr5_1:55068750-55068769 | Msa0737690:intron | 55.0% | |
| GTGTAGGCCGCTTCACCAAT+CGG | + | chr5_1:55068768-55068787 | None:intergenic | 55.0% | |
| CCACAGGGTCCATTAGAGTG+CGG | + | chr5_1:55068990-55069009 | None:intergenic | 55.0% | |
| TACGTTGGAGGACGGAAGAG+AGG | + | chr5_1:55069014-55069033 | None:intergenic | 55.0% | |
| ! | CCGCTGGAGTTTTACGTTGG+AGG | + | chr5_1:55069026-55069045 | None:intergenic | 55.0% |
| AGCGTCCACATTTCGCATCC+TGG | + | chr5_1:55069109-55069128 | None:intergenic | 55.0% | |
| TCGCGACATGTCGTTCCTTC+TGG | + | chr5_1:55069177-55069196 | None:intergenic | 55.0% | |
| AACCCCTTGCAGTGGTTGCA+TGG | + | chr5_1:55069287-55069306 | None:intergenic | 55.0% | |
| ATGCAACCACTGCAAGGGGT+TGG | - | chr5_1:55069286-55069305 | Msa0737690:CDS | 55.0% | |
| AACCACTGCAAGGGGTTGGA+AGG | - | chr5_1:55069290-55069309 | Msa0737690:CDS | 55.0% | |
| ACCACTGCAAGGGGTTGGAA+GGG | - | chr5_1:55069291-55069310 | Msa0737690:CDS | 55.0% | |
| TGCAAGGGGTTGGAAGGGTT+TGG | - | chr5_1:55069296-55069315 | Msa0737690:CDS | 55.0% | |
| ATGTGGCTTCAACCGGCAAC+TGG | + | chr5_1:55069377-55069396 | None:intergenic | 55.0% | |
| ACTCTTCCCGGACGAACATG+TGG | + | chr5_1:55069394-55069413 | None:intergenic | 55.0% | |
| CACATCGTGTGGACTCTTCC+CGG | + | chr5_1:55069406-55069425 | None:intergenic | 55.0% | |
| GGAACCGAATCACGGGCCAT+AGG | + | chr5_1:55067198-55067217 | None:intergenic | 60.0% | |
| CCTCCATGCCGAGCATCTCT+AGG | + | chr5_1:55067219-55067238 | None:intergenic | 60.0% | |
| CCTAGAGATGCTCGGCATGG+AGG | - | chr5_1:55067216-55067235 | Msa0737690:CDS | 60.0% | |
| CCAGCTTCTCCGACCTCATC+CGG | - | chr5_1:55068726-55068745 | Msa0737690:intron | 60.0% | |
| CGGCCGTCGTGGAAGATAAC+CGG | + | chr5_1:55068748-55068767 | None:intergenic | 60.0% | |
| ACGACGGCCGATTGGTGAAG+CGG | - | chr5_1:55068758-55068777 | Msa0737690:intron | 60.0% | |
| ! | CCGCACTCTAATGGACCCTG+TGG | - | chr5_1:55068987-55069006 | Msa0737690:intron | 60.0% |
| GGACGGAAGAGAGGACCACA+GGG | + | chr5_1:55069005-55069024 | None:intergenic | 60.0% | |
| AGGACGGAAGAGAGGACCAC+AGG | + | chr5_1:55069006-55069025 | None:intergenic | 60.0% | |
| TCACGGTAGGAATGGGGGAG+AGG | + | chr5_1:55069080-55069099 | None:intergenic | 60.0% | |
| ACCCTTCCAACCCCTTGCAG+TGG | + | chr5_1:55069295-55069314 | None:intergenic | 60.0% | |
| GGGTTGGAAGGGTTTGGACC+CGG | - | chr5_1:55069302-55069321 | Msa0737690:CDS | 60.0% | |
| CGGGAAGAGTCCACACGATG+TGG | - | chr5_1:55069404-55069423 | Msa0737690:CDS | 60.0% | |
| CCGGATGAGGTCGGAGAAGC+TGG | + | chr5_1:55068729-55068748 | None:intergenic | 65.0% | |
| GCTTCACCAATCGGCCGTCG+TGG | + | chr5_1:55068759-55068778 | None:intergenic | 65.0% | |
| AAGAACACCGGGGCCGCCTG+CGG | + | chr5_1:55068953-55068972 | None:intergenic | 70.0% | |
| CCTGCGGAGGGAGGGAGAGG+TGG | + | chr5_1:55068937-55068956 | None:intergenic | 75.0% | |
| CCACCTCTCCCTCCCTCCGC+AGG | - | chr5_1:55068934-55068953 | Msa0737690:intron | 75.0% | |
| CCTCTCCCTCCCTCCGCAGG+CGG | - | chr5_1:55068937-55068956 | Msa0737690:intron | 75.0% | |
| ! | CCGCCTGCGGAGGGAGGGAG+AGG | + | chr5_1:55068940-55068959 | None:intergenic | 80.0% |
| ! | ACACCGGGGCCGCCTGCGGA+GGG | + | chr5_1:55068949-55068968 | None:intergenic | 80.0% |
| ! | AACACCGGGGCCGCCTGCGG+AGG | + | chr5_1:55068950-55068969 | None:intergenic | 80.0% |
| ! | CGGGGCCGCCTGCGGAGGGA+GGG | + | chr5_1:55068945-55068964 | None:intergenic | 85.0% |
| ! | CCTCCCTCCGCAGGCGGCCC+CGG | - | chr5_1:55068943-55068962 | Msa0737690:intron | 85.0% |
| ! | CCGGGGCCGCCTGCGGAGGG+AGG | + | chr5_1:55068946-55068965 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 55066996 | 55069797 | 55066996 | ID=Msa0737690;Name=Msa0737690 |
| chr5_1 | mRNA | 55066996 | 55069797 | 55066996 | ID=Msa0737690-mRNA-1;Parent=Msa0737690;Name=Msa0737690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=80|1|1|1|1|1|2|201|493 |
| chr5_1 | exon | 55066996 | 55068114 | 55066996 | ID=Msa0737690-mRNA-1:exon:15513;Parent=Msa0737690-mRNA-1 |
| chr5_1 | exon | 55069154 | 55069797 | 55069154 | ID=Msa0737690-mRNA-1:exon:15512;Parent=Msa0737690-mRNA-1 |
| chr5_1 | five_prime_UTR | 55069718 | 55069797 | 55069718 | ID=Msa0737690-mRNA-1:five_prime_utr;Parent=Msa0737690-mRNA-1 |
| chr5_1 | CDS | 55069154 | 55069717 | 55069154 | ID=Msa0737690-mRNA-1:cds;Parent=Msa0737690-mRNA-1 |
| chr5_1 | CDS | 55067197 | 55068114 | 55067197 | ID=Msa0737690-mRNA-1:cds;Parent=Msa0737690-mRNA-1 |
| chr5_1 | three_prime_UTR | 55066996 | 55067196 | 55066996 | ID=Msa0737690-mRNA-1:three_prime_utr;Parent=Msa0737690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
