AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0818720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0818720 MtrunA17_Chr5g0437681 98.765 567 7 0 1 567 1 567 0.0 1167
Msa0818720 MtrunA17_Chr3g0114211 81.162 568 96 3 4 567 10 570 0.0 969
Msa0818720 MtrunA17_Chr5g0431581 59.507 568 221 4 1 567 1 560 0.0 728
Msa0818720 MtrunA17_Chr5g0404361 50.265 565 261 5 7 567 63 611 0.0 604
Msa0818720 MtrunA17_Chr5g0404341 50.970 567 256 7 7 567 16 566 0.0 595
Msa0818720 MtrunA17_Chr7g0238941 52.021 569 254 9 9 567 19 578 0.0 590
Msa0818720 MtrunA17_Chr7g0237491 51.215 576 263 11 4 567 11 580 0.0 585
Msa0818720 MtrunA17_Chr7g0238981 49.914 583 264 9 7 567 17 593 0.0 583
Msa0818720 MtrunA17_Chr4g0031901 52.057 559 245 11 7 551 20 569 0.0 580
Msa0818720 MtrunA17_Chr5g0429511 49.291 564 266 7 8 567 11 558 0.0 579
Msa0818720 MtrunA17_Chr4g0005921 49.562 571 270 6 1 567 1 557 0.0 578
Msa0818720 MtrunA17_Chr7g0237441 49.913 575 268 10 6 567 13 580 0.0 576
Msa0818720 MtrunA17_Chr2g0278811 47.119 590 272 6 11 567 25 607 0.0 574
Msa0818720 MtrunA17_Chr7g0238351 50.089 563 263 11 16 567 26 581 0.0 569
Msa0818720 MtrunA17_Chr5g0436461 49.735 567 261 7 8 567 5 554 0.0 564
Msa0818720 MtrunA17_Chr3g0104061 48.596 570 272 8 2 567 4 556 0.0 559
Msa0818720 MtrunA17_Chr7g0240971 49.223 579 273 9 1 567 1 570 0.0 546
Msa0818720 MtrunA17_Chr4g0008521 49.101 556 260 8 25 567 27 572 0.0 535
Msa0818720 MtrunA17_Chr7g0240991 45.899 573 284 10 10 567 10 571 0.0 534
Msa0818720 MtrunA17_Chr8g0346581 44.786 585 291 6 1 567 1 571 1.03e-179 519
Msa0818720 MtrunA17_Chr3g0133861 46.707 334 164 6 226 553 1 326 2.01e-101 310
Msa0818720 MtrunA17_Chr3g0133871 50.233 215 99 2 1 208 3 216 9.32e-73 232
Msa0818720 MtrunA17_Chr8g0382691 31.058 586 320 20 19 567 29 567 5.77e-72 241
Msa0818720 MtrunA17_Chr3g0118321 30.716 573 324 19 7 545 12 545 3.42e-70 236
Msa0818720 MtrunA17_Chr3g0118331 30.185 593 351 17 1 564 1 559 3.60e-70 236
Msa0818720 MtrunA17_Chr5g0436431 44.958 238 112 5 292 525 6 228 1.24e-60 200
Msa0818720 MtrunA17_Chr8g0374271 28.081 495 305 15 38 527 45 493 1.13e-42 160
Msa0818720 MtrunA17_Chr4g0056511 28.922 529 331 17 11 527 14 509 7.54e-42 159
Msa0818720 MtrunA17_Chr3g0079321 25.868 576 383 20 3 567 9 551 5.57e-40 153
Msa0818720 MtrunA17_Chr4g0024861 26.908 498 300 14 42 527 45 490 5.20e-38 147
Msa0818720 MtrunA17_Chr8g0374261 27.007 548 320 19 7 533 9 497 3.19e-37 145
Msa0818720 MtrunA17_Chr5g0402831 27.525 505 292 17 38 527 45 490 7.27e-37 144
Msa0818720 MtrunA17_Chr1g0157341 25.852 499 316 13 42 533 47 498 1.05e-36 143
Msa0818720 MtrunA17_Chr4g0038671 25.000 564 372 15 8 567 16 532 2.03e-36 142
Msa0818720 MtrunA17_Chr3g0143671 25.992 504 309 15 42 533 48 499 6.03e-36 141
Msa0818720 MtrunA17_Chr2g0322441 26.735 490 311 12 42 527 48 493 4.55e-35 139
Msa0818720 MtrunA17_Chr7g0234061 27.011 522 326 17 27 532 32 514 3.75e-33 134
Msa0818720 MtrunA17_Chr3g0118351 30.000 350 201 10 236 564 5 331 5.86e-33 129
Msa0818720 MtrunA17_Chr3g0121151 24.816 544 348 15 38 567 80 576 4.62e-32 130
Msa0818720 MtrunA17_Chr3g0121171 25.000 544 347 15 38 567 1190 1686 1.06e-31 131
Msa0818720 MtrunA17_Chr3g0121171 24.816 544 348 15 38 567 40 536 4.59e-31 129
Msa0818720 MtrunA17_Chr3g0121171 24.449 544 350 14 38 567 615 1111 1.01e-30 128
Msa0818720 MtrunA17_Chr3g0121171 24.297 498 324 14 80 567 1798 2252 8.55e-26 113
Msa0818720 MtrunA17_Chr3g0121161 25.185 540 351 14 38 567 80 576 1.64e-31 129
Msa0818720 MtrunA17_Chr4g0043261 24.953 537 343 16 11 533 7 497 7.83e-31 126
Msa0818720 MtrunA17_Chr4g0075071 26.030 534 336 20 5 527 9 494 1.08e-28 120
Msa0818720 MtrunA17_Chr4g0043251 25.520 529 355 14 42 567 45 537 1.71e-28 119
Msa0818720 MtrunA17_Chr3g0118341 35.829 187 111 6 1 183 1 182 1.60e-26 107
Msa0818720 MtrunA17_Chr4g0024641 25.328 458 291 16 76 527 1 413 1.34e-22 102
Msa0818720 MtrunA17_Chr5g0436411 42.667 75 40 1 8 79 5 79 2.73e-11 59.7
Msa0818720 MtrunA17_Chr3g0118931 36.232 69 44 0 477 545 10 78 8.16e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0818720 AT2G40370.1 76.316 570 126 3 7 567 11 580 0.0 932
Msa0818720 AT5G05390.1 76.937 568 124 2 1 567 4 565 0.0 928
Msa0818720 AT2G30210.1 64.336 572 197 4 1 567 1 570 0.0 798
Msa0818720 AT5G07130.1 65.674 571 190 6 1 567 1 569 0.0 775
Msa0818720 AT5G07130.2 65.844 486 160 6 86 567 1 484 0.0 653
Msa0818720 AT5G07130.3 65.844 486 160 6 86 567 1 484 0.0 653
Msa0818720 AT5G09360.1 51.579 570 261 7 1 567 12 569 0.0 607
Msa0818720 AT2G29130.1 51.295 579 249 11 8 567 9 573 0.0 590
Msa0818720 AT5G60020.1 49.654 578 269 11 7 567 5 577 0.0 571
Msa0818720 AT5G03260.1 49.472 568 264 7 7 567 6 557 0.0 570
Msa0818720 AT5G60020.3 51.188 547 248 10 35 567 4 545 0.0 565
Msa0818720 AT2G38080.1 47.880 566 273 8 7 567 10 558 0.0 565
Msa0818720 AT5G01190.1 49.912 565 263 6 9 567 8 558 0.0 561
Msa0818720 AT3G09220.1 50.091 549 254 7 11 550 13 550 0.0 560
Msa0818720 AT5G58910.2 46.290 566 286 8 8 567 14 567 0.0 547
Msa0818720 AT5G01190.2 51.423 527 238 5 45 567 32 544 0.0 544
Msa0818720 AT5G58910.3 46.290 566 285 9 8 567 14 566 0.0 543
Msa0818720 AT5G48100.1 46.835 553 278 9 4 551 6 547 0.0 533
Msa0818720 AT2G46570.1 45.645 574 288 6 4 567 10 569 0.0 531
Msa0818720 AT1G18140.1 48.301 559 262 12 27 567 32 581 0.0 525
Msa0818720 AT5G01040.1 45.724 573 285 9 5 567 10 566 0.0 523
Msa0818720 AT5G60020.2 49.440 536 249 11 7 525 5 535 1.56e-180 520
Msa0818720 AT5G58910.1 46.580 541 264 9 33 567 2 523 4.29e-180 518
Msa0818720 AT5G01050.1 45.565 575 285 8 5 567 10 568 7.16e-179 518
Msa0818720 AT2G46570.2 46.667 495 242 5 81 567 4 484 1.31e-163 475
Msa0818720 AT3G09220.2 50.647 464 209 7 96 550 1 453 5.33e-163 473
Msa0818720 AT5G21100.1 31.434 579 325 20 19 564 19 558 1.19e-73 245
Msa0818720 AT4G39830.1 30.921 608 338 22 1 567 11 577 8.54e-72 241
Msa0818720 AT5G21105.1 30.651 584 340 18 11 564 25 573 1.83e-69 234
Msa0818720 AT5G21105.3 30.092 545 320 17 11 525 25 538 1.94e-59 207
Msa0818720 AT4G39830.2 30.134 521 285 20 85 567 3 482 7.82e-52 185
Msa0818720 AT4G39830.3 30.000 520 285 20 86 567 2 480 4.85e-51 182
Msa0818720 AT4G39830.4 29.480 519 278 18 85 567 3 469 4.18e-49 177
Msa0818720 AT5G66920.1 27.017 533 333 16 42 567 55 538 7.23e-44 164
Msa0818720 AT4G12420.1 27.586 551 341 20 1 532 1 512 1.97e-43 164
Msa0818720 AT4G12420.2 27.586 551 341 20 1 532 1 512 1.97e-43 164
Msa0818720 AT1G75790.1 26.527 524 344 12 7 527 10 495 1.57e-42 160
Msa0818720 AT5G51480.1 26.418 564 368 16 17 567 21 550 2.46e-41 158
Msa0818720 AT1G21860.1 25.898 529 338 15 11 533 16 496 3.79e-39 150
Msa0818720 AT1G76160.1 24.811 528 354 14 7 533 11 496 1.48e-38 149
Msa0818720 AT4G25240.2 26.562 576 371 18 8 567 11 550 1.23e-36 144
Msa0818720 AT4G25240.1 26.562 576 371 18 8 567 11 550 1.23e-36 144
Msa0818720 AT5G21105.2 29.781 366 215 11 208 564 50 382 1.49e-36 140
Msa0818720 AT1G21850.1 25.836 538 336 18 7 533 11 496 8.88e-36 141
Msa0818720 AT1G41830.1 25.651 538 340 19 6 533 10 497 1.19e-35 140
Msa0818720 AT5G48450.2 25.357 560 370 18 9 564 13 528 2.25e-34 137
Msa0818720 AT5G48450.1 25.357 560 370 18 9 564 13 528 2.72e-34 137
Msa0818720 AT4G22010.1 26.226 530 336 17 6 527 8 490 7.09e-33 132
Msa0818720 AT2G23630.1 27.239 536 329 17 42 567 48 532 4.42e-31 127
Msa0818720 AT2G23630.2 27.239 536 329 17 42 567 53 537 5.61e-31 127
Msa0818720 AT4G37160.1 26.224 572 356 16 10 567 15 534 1.12e-30 126
Msa0818720 AT1G55570.1 25.558 493 321 12 42 527 47 500 1.01e-28 120
Msa0818720 AT3G13390.1 25.391 512 332 12 25 527 29 499 4.96e-28 118
Msa0818720 AT1G55560.1 25.000 536 333 18 42 564 44 523 5.51e-28 118
Msa0818720 AT4G28090.1 23.944 497 325 15 45 533 49 500 1.54e-27 117
Msa0818720 AT3G13400.2 25.451 499 313 15 42 527 45 497 1.91e-25 110
Msa0818720 AT3G13400.1 25.451 499 313 15 42 527 45 497 1.91e-25 110
Msa0818720 AT4G37160.2 30.032 313 201 5 10 319 15 312 1.54e-24 107
Msa0818720 AT4G38420.1 23.279 494 329 15 42 527 48 499 2.54e-22 101
Msa0818720 AT4G38420.2 27.386 241 165 5 42 281 48 279 5.82e-20 93.2
Msa0818720 AT4G38420.3 27.386 241 165 5 42 281 48 279 1.10e-19 92.8

Find 152 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAAGCTTTAGAAGTTTA+AGG 0.083519 5_3:+54761291 Msa0818720:CDS
ACCTATAGATTTACCATTAA+TGG 0.101466 5_3:+54759899 Msa0818720:CDS
CACCTACTACTGTTAGTTTA+TGG 0.135494 5_3:-54760989 None:intergenic
TGTACCTTCTTGTCCATTAA+TGG 0.180702 5_3:-54759912 None:intergenic
TGGCTTAGAGCCACAGTTTA+TGG 0.186697 5_3:+54759959 Msa0818720:CDS
AAAACATATACGCTCATATT+TGG 0.224570 5_3:-54762783 None:intergenic
CGTGAAACACCCATTCTTCT+AGG 0.253813 5_3:+54760037 Msa0818720:CDS
ACAATTGTTCCAATTGATTC+AGG 0.259031 5_3:+54760900 Msa0818720:CDS
TATATTGTTGCTGAGGGATT+TGG 0.270036 5_3:+54761713 Msa0818720:CDS
ACTGTTGCTGTACCTGTTAA+TGG 0.271612 5_3:+54761797 Msa0818720:CDS
TCTGATGCATACACTATTAA+TGG 0.273121 5_3:+54760460 Msa0818720:CDS
ATTGTTTGTTTCCCTGCATT+GGG 0.279523 5_3:+54762548 Msa0818720:three_prime_UTR
CCAACTTTGGAAATTAATAA+TGG 0.283923 5_3:+54759025 Msa0818720:CDS
AAAGTTACTAAGTTGAGATT+TGG 0.284792 5_3:+54761608 Msa0818720:CDS
GGTGGCATGCTCATAGTTCA+TGG 0.302145 5_3:+54759939 Msa0818720:CDS
TGAGGACCTGCCTTTGTGTT+AGG 0.313647 5_3:+54762478 Msa0818720:CDS
GTGCAGCATTGATTACTCTT+AGG 0.316195 5_3:-54760935 None:intergenic
GTGTATGCATCAGATATATT+TGG 0.328938 5_3:-54760451 None:intergenic
CATTGTTTGTTTCCCTGCAT+TGG 0.329323 5_3:+54762547 Msa0818720:three_prime_UTR
CTAGTATCAATTTAACCAAT+AGG 0.331374 5_3:-54762687 None:intergenic
GGACATTGAGTCACAAATTC+TGG 0.334936 5_3:-54759854 None:intergenic
AGATCTTCATCAATTTCATT+AGG 0.335973 5_3:-54761326 None:intergenic
AGAGGATGGAGAAGGGCTAT+TGG 0.338124 5_3:+54762436 Msa0818720:CDS
ACAACCAATGTTCTCATGTT+AGG 0.341290 5_3:+54761038 Msa0818720:CDS
TGTTCACATTGGATGGGGTT+TGG 0.346069 5_3:+54762397 Msa0818720:CDS
GTCCTCAGGAGGAGCTTCTA+TGG 0.350489 5_3:-54762462 None:intergenic
AATCACCCTATTCATCTTCA+TGG 0.351556 5_3:+54761680 Msa0818720:CDS
TCATATCCATGAAGATGAAT+AGG 0.353366 5_3:-54761686 None:intergenic
CCATTATTAATTTCCAAAGT+TGG 0.356421 5_3:-54759025 None:intergenic
GTTTGATGTATGTAGGTGTT+TGG 0.364623 5_3:+54762354 Msa0818720:intron
TTTGTTTCTCCTGAATCAAT+TGG 0.365718 5_3:-54760909 None:intergenic
CGCCGGGCGCGCTTACCAAT+CGG 0.373787 5_3:+54761121 Msa0818720:CDS
GGATAAGCATCTCCTTCCTT+AGG 0.376333 5_3:-54759998 None:intergenic
TAGTATCAATTTAACCAATA+GGG 0.376992 5_3:-54762686 None:intergenic
AATTAATAATGGAGATACTT+TGG 0.377624 5_3:+54759036 Msa0818720:CDS
GAGATTTGGATCAAGGGTTC+AGG 0.378810 5_3:+54761622 Msa0818720:CDS
ACAATTTCCTGGTCCAACTT+TGG 0.400549 5_3:+54759012 Msa0818720:CDS
ATAACTGCCCAACCATTAAC+AGG 0.400604 5_3:-54761809 None:intergenic
AGAATGGGTGTTTCACGCTT+TGG 0.403573 5_3:-54760031 None:intergenic
GGATTAGAACATCAGTGGTT+TGG 0.403888 5_3:-54761067 None:intergenic
CTAAGTTGAGATTTGGATCA+AGG 0.404145 5_3:+54761615 Msa0818720:CDS
TGCTGTACCTGTTAATGGTT+GGG 0.408222 5_3:+54761802 Msa0818720:CDS
TCCATTAATGGTAAATCTAT+AGG 0.411836 5_3:-54759900 None:intergenic
CAATGACCGACTCACATTAC+CGG 0.413180 5_3:-54761564 None:intergenic
AGCCGATTGGTAAGCGCGCC+CGG 0.414132 5_3:-54761123 None:intergenic
CCGGCGATGTAGTATCTTGA+TGG 0.420568 5_3:-54761104 None:intergenic
GTTACAATGTCACCATTCAT+TGG 0.426411 5_3:+54759083 Msa0818720:CDS
ACTGTGAATGGACAATTTCC+TGG 0.436760 5_3:+54759001 Msa0818720:CDS
ATCCTGCAGGCTCATAAACT+TGG 0.437751 5_3:+54761482 Msa0818720:CDS
TTTGTAATTGATATGTTATG+AGG 0.438070 5_3:+54762724 Msa0818720:three_prime_UTR
TTTCATTTAGAGATAAAATT+GGG 0.438549 5_3:+54762606 Msa0818720:three_prime_UTR
CTTGGATGTTCACATTGGAT+GGG 0.442663 5_3:+54762391 Msa0818720:CDS
ATGATCATTACCTAGAAGAA+TGG 0.443551 5_3:-54760047 None:intergenic
GATAGTGTCACAAACCCTAT+TGG 0.446797 5_3:+54762672 Msa0818720:three_prime_UTR
TAACTTTCTCCAGGACGAAT+AGG 0.449717 5_3:-54759875 None:intergenic
ACTTGGATGTTCACATTGGA+TGG 0.450150 5_3:+54762390 Msa0818720:CDS
GCAGGTAATGAAGGCATGAT+TGG 0.454006 5_3:-54761236 None:intergenic
CATATCCATGAAGATGAATA+GGG 0.455044 5_3:-54761685 None:intergenic
GTGAGACAAGCCACACAAAC+AGG 0.461238 5_3:+54760421 Msa0818720:CDS
GTGTTGCACAGCCTCTTCAC+TGG 0.461801 5_3:-54758965 None:intergenic
TCATTGTGGCAACCGATTCA+AGG 0.473488 5_3:+54761581 Msa0818720:CDS
TCATCACCTTGTCCTGCAAA+GGG 0.474167 5_3:+54761197 Msa0818720:CDS
TAACACAAAGGCAGGTCCTC+AGG 0.478994 5_3:-54762476 None:intergenic
TTGCTGTACCTGTTAATGGT+TGG 0.479566 5_3:+54761801 Msa0818720:CDS
CAAATGAGCATCACTGTGAA+TGG 0.479962 5_3:+54758989 Msa0818720:CDS
TGATGATTTGTATTCAAGAA+TGG 0.480556 5_3:-54761180 None:intergenic
GTAACTTTAGTCCCTTGAAT+CGG 0.482864 5_3:-54761593 None:intergenic
AGATTTGTTGCTGACAATCC+AGG 0.489827 5_3:+54761833 Msa0818720:CDS
TGATCATTACCTAGAAGAAT+GGG 0.490111 5_3:-54760046 None:intergenic
AAACTCGTGCTCATGAACTT+TGG 0.490870 5_3:-54758824 None:intergenic
ACCTTGTTGATCCACCTATG+AGG 0.490977 5_3:+54761771 Msa0818720:CDS
ACAGCAACAGTGTTCCTCAT+AGG 0.495749 5_3:-54761785 None:intergenic
TTGGATGTTCACATTGGATG+GGG 0.496559 5_3:+54762392 Msa0818720:CDS
TTGGATTATGCATTGTCACT+TGG 0.496947 5_3:+54762373 Msa0818720:CDS
AACCATAAACTAACAGTAGT+AGG 0.497147 5_3:+54760987 Msa0818720:CDS
GGGGTTAGACAAATCAGAAC+AGG 0.499855 5_3:+54759818 Msa0818720:CDS
TGATTTGCATTAAAATTCGA+TGG 0.500850 5_3:-54761383 None:intergenic
GATAAGCATCTCCTTCCTTA+GGG 0.506054 5_3:-54759997 None:intergenic
GCTTGTCTCACAACATCCAT+AGG 0.506366 5_3:-54760409 None:intergenic
ATGAGAACATTGGTTGTGAA+TGG 0.509668 5_3:-54761032 None:intergenic
TCACGCTTTGGCTTAGTGAA+AGG 0.510131 5_3:-54760019 None:intergenic
CTCCAAGTTTATGAGCCTGC+AGG 0.510477 5_3:-54761484 None:intergenic
AGAACATCAGTGGTTTGGCC+AGG 0.514268 5_3:-54761062 None:intergenic
ATCATCACCTTGTCCTGCAA+AGG 0.514426 5_3:+54761196 Msa0818720:CDS
GTGATATTATTACCAATGAA+TGG 0.515384 5_3:-54759095 None:intergenic
AGATGAATAGGGTGATTCTC+AGG 0.517564 5_3:-54761674 None:intergenic
ATCAGAACAGGATGGGCTGA+TGG 0.518148 5_3:+54759830 Msa0818720:CDS
TTGATGGTGGTTGGTCACCT+TGG 0.518654 5_3:-54761088 None:intergenic
GAAGTGAACCGTGTACCGTT+CGG 0.519056 5_3:-54761416 None:intergenic
TTTGCAATTGTGAAGAAAAG+AGG 0.519484 5_3:-54760966 None:intergenic
ACTCAATGTCCTATTCGTCC+TGG 0.520865 5_3:+54759866 Msa0818720:CDS
GATTATCCTAACACAAAGGC+AGG 0.522293 5_3:-54762484 None:intergenic
GCTCATAAACTTGGAGTACA+AGG 0.524236 5_3:+54761491 Msa0818720:CDS
CAGCATTGATTACTCTTAGG+AGG 0.526575 5_3:-54760932 None:intergenic
TTTACCATTAATGGACAAGA+AGG 0.529526 5_3:+54759908 Msa0818720:CDS
GTGTTTGTGTCATTGTAAGC+AGG 0.530023 5_3:-54761254 None:intergenic
ATGTGTGTGAATGAAGGTTA+AGG 0.535530 5_3:-54758708 None:intergenic
ATGGTGGGATGCAAACCCTA+TGG 0.535899 5_3:+54760393 Msa0818720:CDS
GTTAAGGTTACAAATTGCAA+TGG 0.537808 5_3:-54758692 None:intergenic
TCATTGTAAGCAGGTAATGA+AGG 0.540128 5_3:-54761245 None:intergenic
TGATTTCTATATTGTTGCTG+AGG 0.540678 5_3:+54761706 Msa0818720:CDS
CTTTACAAGTGCTCTACCAA+AGG 0.542011 5_3:+54760496 Msa0818720:CDS
TTTAATGCAAATCAATGTCA+AGG 0.544640 5_3:+54761392 Msa0818720:CDS
ATCACCTTGTCCTGCAAAGG+GGG 0.545026 5_3:+54761199 Msa0818720:CDS
CTATAGGTGTAACTTTCTCC+AGG 0.545148 5_3:-54759884 None:intergenic
TAAGTTGAGATTTGGATCAA+GGG 0.547755 5_3:+54761616 Msa0818720:CDS
CCATCAAGATACTACATCGC+CGG 0.549313 5_3:+54761104 Msa0818720:CDS
GATTTCTATATTGTTGCTGA+GGG 0.549381 5_3:+54761707 Msa0818720:CDS
TGGAGCTGCTCCTGTTTGTG+TGG 0.553190 5_3:-54760431 None:intergenic
AAAACAATGTGTGTGAATGA+AGG 0.555844 5_3:-54758714 None:intergenic
CATTGTGGCAACCGATTCAA+GGG 0.556129 5_3:+54761582 Msa0818720:CDS
ACCGGTGTAATCAAATTGCA+CGG 0.556156 5_3:-54761546 None:intergenic
GTCAAGGACCGAACGGTACA+CGG 0.560784 5_3:+54761408 Msa0818720:CDS
AGCTCTAATCATTCACCCTA+AGG 0.560869 5_3:+54759982 Msa0818720:CDS
CATCAAGATACTACATCGCC+GGG 0.561153 5_3:+54761105 Msa0818720:CDS
ACCACTGATGTTCTAATCCA+AGG 0.563616 5_3:+54761071 Msa0818720:CDS
TTAATTTCCAAAGTTGGACC+AGG 0.564251 5_3:-54759019 None:intergenic
GACAAGAAGGTACACTTTGG+TGG 0.574088 5_3:+54759921 Msa0818720:CDS
TTGTTTAATACTCTAAACAA+TGG 0.576331 5_3:+54758744 Msa0818720:exon
TTGTTTGTTTCCCTGCATTG+GGG 0.580260 5_3:+54762549 Msa0818720:three_prime_UTR
CTTGTCTCACAACATCCATA+GGG 0.581965 5_3:-54760408 None:intergenic
TACACTATTAATGGTCAACC+TGG 0.583665 5_3:+54760469 Msa0818720:CDS
CTAATCATTCACCCTAAGGA+AGG 0.586825 5_3:+54759986 Msa0818720:CDS
TGTAGTATCTTGATGGTGGT+TGG 0.588008 5_3:-54761097 None:intergenic
GGTTGTGAATGGTTTGACAT+AGG 0.595120 5_3:-54761021 None:intergenic
ACCTTGGATTAGAACATCAG+TGG 0.604071 5_3:-54761072 None:intergenic
ATGGACAAGAAGGTACACTT+TGG 0.605647 5_3:+54759918 Msa0818720:CDS
TTTGTATTCAAGAATGGCAG+TGG 0.605780 5_3:-54761174 None:intergenic
ATTGTTGAGTCCTAATCCAA+TGG 0.608848 5_3:-54761357 None:intergenic
TAGACAAATCAGAACAGGAT+GGG 0.611575 5_3:+54759823 Msa0818720:CDS
TACAAGCAACTCCAGTGAAG+AGG 0.611814 5_3:+54758954 Msa0818720:CDS
GAGCACTTGTAAAGATCACC+AGG 0.619435 5_3:-54760487 None:intergenic
GCAACAGTGTTCCTCATAGG+TGG 0.621280 5_3:-54761782 None:intergenic
TGTCACTTGGATGTTCACAT+TGG 0.623581 5_3:+54762386 Msa0818720:CDS
GTGTAATCAAATTGCACGGG+AGG 0.625603 5_3:-54761542 None:intergenic
CCGGTGTAATCAAATTGCAC+GGG 0.626025 5_3:-54761545 None:intergenic
ATTACACCGGTAATGTGAGT+CGG 0.633330 5_3:+54761558 Msa0818720:CDS
GTCCATAGAAGCTCCTCCTG+AGG 0.638740 5_3:+54762460 Msa0818720:CDS
AATGTTCTCATGTTAGGACC+TGG 0.640008 5_3:+54761044 Msa0818720:CDS
CACAAAGGCAGGTCCTCAGG+AGG 0.658358 5_3:-54762473 None:intergenic
GGGTTTGTGACACTATCAGA+TGG 0.658383 5_3:-54762666 None:intergenic
TCACCTTGTCCTGCAAAGGG+GGG 0.659071 5_3:+54761200 Msa0818720:CDS
TTTGGATTATCCTAACACAA+AGG 0.661322 5_3:-54762488 None:intergenic
GTAATGTGAGTCGGTCATTG+TGG 0.663037 5_3:+54761567 Msa0818720:CDS
TCCTCATAGGTGGATCAACA+AGG 0.663984 5_3:-54761772 None:intergenic
AATCAATGTCAAGGACCGAA+CGG 0.668939 5_3:+54761401 Msa0818720:CDS
CCCGTGCAATTTGATTACAC+CGG 0.670640 5_3:+54761545 Msa0818720:CDS
CATCACCTTGTCCTGCAAAG+GGG 0.673225 5_3:+54761198 Msa0818720:CDS
TTAGACAAATCAGAACAGGA+TGG 0.677485 5_3:+54759822 Msa0818720:CDS
AGGTCCTAACATGAGAACAT+TGG 0.679248 5_3:-54761042 None:intergenic
GATTAGAGCTCCATAAACTG+TGG 0.691733 5_3:-54759969 None:intergenic
GCGATGTAGTATCTTGATGG+TGG 0.696908 5_3:-54761101 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTAAAAAAAAAT+AGG - chr5_3:54759187-54759206 None:intergenic 0.0%
!! TTAACAACTAAAAATAAAAA+GGG - chr5_3:54758878-54758897 None:intergenic 10.0%
!! ATTAACAACTAAAAATAAAA+AGG - chr5_3:54758879-54758898 None:intergenic 10.0%
!! ACTATAAAAATACTATTATA+TGG - chr5_3:54759620-54759639 None:intergenic 10.0%
!!! TATAATAGTATTTTTATAGT+AGG + chr5_3:54759620-54759639 Msa0818720:intron 10.0%
!!! ATAATAGTATTTTTATAGTA+GGG + chr5_3:54759621-54759640 Msa0818720:intron 10.0%
!!! TTTTTTCAATTTGTTAATTA+AGG + chr5_3:54760232-54760251 Msa0818720:intron 10.0%
!!! ATGATGATTATTTTTTAATT+AGG + chr5_3:54760367-54760386 Msa0818720:intron 10.0%
!!! TGATGATTATTTTTTAATTA+GGG + chr5_3:54760368-54760387 Msa0818720:intron 10.0%
!! CAATTAATTTATTATGTATA+TGG - chr5_3:54760725-54760744 None:intergenic 10.0%
!!! ATTTTGAATAAAATTTATGT+AGG - chr5_3:54761963-54761982 None:intergenic 10.0%
!!! GAAAAAATTGTAAATTTTAT+AGG + chr5_3:54762096-54762115 Msa0818720:intron 10.0%
!! AACTTTATCATAAAAATTAA+GGG - chr5_3:54762139-54762158 None:intergenic 10.0%
!! AAACTTTATCATAAAAATTA+AGG - chr5_3:54762140-54762159 None:intergenic 10.0%
!!! AATTACAAATTTTCATAATT+TGG - chr5_3:54762509-54762528 None:intergenic 10.0%
!! GGAGATTAATTATAATTAAT+TGG + chr5_3:54758909-54758928 Msa0818720:intron 15.0%
!! TTATATTCCTATTAGTATAT+AGG + chr5_3:54759292-54759311 Msa0818720:intron 15.0%
!! AGTGTAATAACAAATTTAAT+TGG + chr5_3:54759366-54759385 Msa0818720:intron 15.0%
!! TCAAAAATCAAAAACAAAAA+AGG - chr5_3:54759569-54759588 None:intergenic 15.0%
!! TAAAAATACTATTATATGGA+AGG - chr5_3:54759616-54759635 None:intergenic 15.0%
!!! ACCACAATTTAAAATTTTAA+TGG + chr5_3:54759696-54759715 Msa0818720:intron 15.0%
!!! ACCATTAAAATTTTAAATTG+TGG - chr5_3:54759700-54759719 None:intergenic 15.0%
!! TGCAAATAATCAATAATTTA+TGG + chr5_3:54759762-54759781 Msa0818720:intron 15.0%
!! AGATAAGAATTAAAATAAGT+TGG - chr5_3:54760190-54760209 None:intergenic 15.0%
!!! GATGATTATTTTTTAATTAG+GGG + chr5_3:54760369-54760388 Msa0818720:intron 15.0%
!!! TAAGCAAAAATCAATATTTT+AGG - chr5_3:54760754-54760773 None:intergenic 15.0%
!!! TTTTCATTTAGAGATAAAAT+TGG + chr5_3:54762605-54762624 Msa0818720:three_prime_UTR 15.0%
!! TTTCATTTAGAGATAAAATT+GGG + chr5_3:54762606-54762625 Msa0818720:three_prime_UTR 15.0%
!! TTGTTTAATACTCTAAACAA+TGG + chr5_3:54758744-54758763 Msa0818720:exon 20.0%
!! TTAGTTGTTAATTTAACCTT+TGG + chr5_3:54758887-54758906 Msa0818720:intron 20.0%
!! TAGTTGTTAATTTAACCTTT+GGG + chr5_3:54758888-54758907 Msa0818720:intron 20.0%
!! AATTATAATTAATCTCCCAA+AGG - chr5_3:54758906-54758925 None:intergenic 20.0%
!!! AATTAATAATGGAGATACTT+TGG + chr5_3:54759036-54759055 Msa0818720:CDS 20.0%
!!! TACTTTTCCTATATACTAAT+AGG - chr5_3:54759302-54759321 None:intergenic 20.0%
!! AAAACTAAAAAGTAACTAGA+TGG - chr5_3:54759515-54759534 None:intergenic 20.0%
!! ATGCATGCTATAATTTATAA+AGG + chr5_3:54759729-54759748 Msa0818720:intron 20.0%
!!! TTATTGCATTTTGAATCTTT+AGG + chr5_3:54759792-54759811 Msa0818720:intron 20.0%
!!! ATTTTTATATCTGATGTAAC+TGG + chr5_3:54760121-54760140 Msa0818720:intron 20.0%
!! AATCTTTGTCTAAAAAGAAA+AGG - chr5_3:54760309-54760328 None:intergenic 20.0%
!!! TTATTTTTTAATTAGGGGAA+TGG + chr5_3:54760374-54760393 Msa0818720:intron 20.0%
!! ACATAAAATAATCAAACCTT+TGG - chr5_3:54760515-54760534 None:intergenic 20.0%
!!! TATATGGTCTTTTTAAATGT+CGG - chr5_3:54760709-54760728 None:intergenic 20.0%
!!! TTTTTGCTTATAATAGTGAT+CGG + chr5_3:54760764-54760783 Msa0818720:intron 20.0%
!! AATGATCATATGTCAAATAA+TGG - chr5_3:54760865-54760884 None:intergenic 20.0%
!! ATTATTTGACATATGATCAT+TGG + chr5_3:54760864-54760883 Msa0818720:intron 20.0%
!!! ATTAGGGTTAATTATGTTTT+CGG + chr5_3:54761899-54761918 Msa0818720:intron 20.0%
!! TTGAATAAAATTTATGTAGG+AGG - chr5_3:54761960-54761979 None:intergenic 20.0%
!! GTCTCAATAAAATCAAAATA+AGG + chr5_3:54762038-54762057 Msa0818720:intron 20.0%
!! ATGTTTGATCTTATGTAATT+TGG + chr5_3:54762329-54762348 Msa0818720:intron 20.0%
!! TAGTATCAATTTAACCAATA+GGG - chr5_3:54762689-54762708 None:intergenic 20.0%
!! TTTGTAATTGATATGTTATG+AGG + chr5_3:54762724-54762743 Msa0818720:three_prime_UTR 20.0%
! AAGAAAAATTGCTAAGAAGA+TGG - chr5_3:54758782-54758801 None:intergenic 25.0%
! GCATGTTTATTAATGTGAAA+AGG + chr5_3:54758931-54758950 Msa0818720:intron 25.0%
! CCATTATTAATTTCCAAAGT+TGG - chr5_3:54759028-54759047 None:intergenic 25.0%
!! CCAACTTTGGAAATTAATAA+TGG + chr5_3:54759025-54759044 Msa0818720:CDS 25.0%
! GTGATATTATTACCAATGAA+TGG - chr5_3:54759098-54759117 None:intergenic 25.0%
! GGAAAAGTAAATGATAGATA+CGG + chr5_3:54759313-54759332 Msa0818720:intron 25.0%
! ATAAATAGCAATGCTCAAAA+AGG + chr5_3:54759431-54759450 Msa0818720:intron 25.0%
! TAAATAGCAATGCTCAAAAA+GGG + chr5_3:54759432-54759451 Msa0818720:intron 25.0%
! AAGGTGTAAGAAAACAAAAA+AGG - chr5_3:54759597-54759616 None:intergenic 25.0%
! ACCTATAGATTTACCATTAA+TGG + chr5_3:54759899-54759918 Msa0818720:CDS 25.0%
! TCCATTAATGGTAAATCTAT+AGG - chr5_3:54759903-54759922 None:intergenic 25.0%
! AGAATTCAATAAGTGATTGA+AGG - chr5_3:54760811-54760830 None:intergenic 25.0%
! AATGGAAAAATGTTTAGTCA+TGG - chr5_3:54760847-54760866 None:intergenic 25.0%
!! TGATGATTTGTATTCAAGAA+TGG - chr5_3:54761183-54761202 None:intergenic 25.0%
!!! GTAAAAGCTTTAGAAGTTTA+AGG + chr5_3:54761291-54761310 Msa0818720:CDS 25.0%
! AGATCTTCATCAATTTCATT+AGG - chr5_3:54761329-54761348 None:intergenic 25.0%
!! TGATTTGCATTAAAATTCGA+TGG - chr5_3:54761386-54761405 None:intergenic 25.0%
! TTTAATGCAAATCAATGTCA+AGG + chr5_3:54761392-54761411 Msa0818720:CDS 25.0%
!! AAAGTTACTAAGTTGAGATT+TGG + chr5_3:54761608-54761627 Msa0818720:CDS 25.0%
!!! ATTTTGAAGCATCTTTCTTA+GGG - chr5_3:54761748-54761767 None:intergenic 25.0%
!!! AATTTTGAAGCATCTTTCTT+AGG - chr5_3:54761749-54761768 None:intergenic 25.0%
! AAAGTTTCACAAACATGATA+TGG + chr5_3:54762153-54762172 Msa0818720:intron 25.0%
! AGAAAAATGAAACAGAACAA+TGG - chr5_3:54762586-54762605 None:intergenic 25.0%
! CTAGTATCAATTTAACCAAT+AGG - chr5_3:54762690-54762709 None:intergenic 25.0%
! AAAACATATACGCTCATATT+TGG - chr5_3:54762786-54762805 None:intergenic 25.0%
AAAACAATGTGTGTGAATGA+AGG - chr5_3:54758717-54758736 None:intergenic 30.0%
! CTTAGCAATTTTTCTTCTCT+TGG + chr5_3:54758786-54758805 Msa0818720:CDS 30.0%
TAAATGAGTTAAGACAAGTC+AGG + chr5_3:54759482-54759501 Msa0818720:intron 30.0%
AAATGAGTTAAGACAAGTCA+GGG + chr5_3:54759483-54759502 Msa0818720:intron 30.0%
! CATTTTGAATCTTTAGGCAT+GGG + chr5_3:54759798-54759817 Msa0818720:intron 30.0%
! ATTTTGAATCTTTAGGCATG+GGG + chr5_3:54759799-54759818 Msa0818720:intron 30.0%
! TTTACCATTAATGGACAAGA+AGG + chr5_3:54759908-54759927 Msa0818720:CDS 30.0%
TGATCATTACCTAGAAGAAT+GGG - chr5_3:54760049-54760068 None:intergenic 30.0%
ATGATCATTACCTAGAAGAA+TGG - chr5_3:54760050-54760069 None:intergenic 30.0%
GACAAAGATTATGTTCATGA+TGG + chr5_3:54760319-54760338 Msa0818720:intron 30.0%
!!! TTTTTTAATTAGGGGAATGG+TGG + chr5_3:54760377-54760396 Msa0818720:intron 30.0%
!! TTTTTAATTAGGGGAATGGT+GGG + chr5_3:54760378-54760397 Msa0818720:intron 30.0%
GTGTATGCATCAGATATATT+TGG - chr5_3:54760454-54760473 None:intergenic 30.0%
TCTGATGCATACACTATTAA+TGG + chr5_3:54760460-54760479 Msa0818720:CDS 30.0%
! ACAATTGTTCCAATTGATTC+AGG + chr5_3:54760900-54760919 Msa0818720:CDS 30.0%
! TTTGTTTCTCCTGAATCAAT+TGG - chr5_3:54760912-54760931 None:intergenic 30.0%
TTTGCAATTGTGAAGAAAAG+AGG - chr5_3:54760969-54760988 None:intergenic 30.0%
AACCATAAACTAACAGTAGT+AGG + chr5_3:54760987-54761006 Msa0818720:CDS 30.0%
! GAAGATCTTTTCTTTACCAT+TGG + chr5_3:54761341-54761360 Msa0818720:CDS 30.0%
! CTTTTCTTTACCATTGGATT+AGG + chr5_3:54761347-54761366 Msa0818720:CDS 30.0%
! TAAGTTGAGATTTGGATCAA+GGG + chr5_3:54761616-54761635 Msa0818720:CDS 30.0%
CATATCCATGAAGATGAATA+GGG - chr5_3:54761688-54761707 None:intergenic 30.0%
TCATATCCATGAAGATGAAT+AGG - chr5_3:54761689-54761708 None:intergenic 30.0%
TGATTTCTATATTGTTGCTG+AGG + chr5_3:54761706-54761725 Msa0818720:CDS 30.0%
GATTTCTATATTGTTGCTGA+GGG + chr5_3:54761707-54761726 Msa0818720:CDS 30.0%
ATCAAAATAAGGACTGAAAG+TGG + chr5_3:54762049-54762068 Msa0818720:intron 30.0%
TTTGGTTGTTTGATGTATGT+AGG + chr5_3:54762347-54762366 Msa0818720:intron 30.0%
TTTGGATTATCCTAACACAA+AGG - chr5_3:54762491-54762510 None:intergenic 30.0%
ATGTGTGTGAATGAAGGTTA+AGG - chr5_3:54758711-54758730 None:intergenic 35.0%
TTAATTTCCAAAGTTGGACC+AGG - chr5_3:54759022-54759041 None:intergenic 35.0%
GTTACAATGTCACCATTCAT+TGG + chr5_3:54759083-54759102 Msa0818720:CDS 35.0%
!! AAAAGTGTTTGCTTGCTTGT+GGG - chr5_3:54759222-54759241 None:intergenic 35.0%
!! AAAAAGTGTTTGCTTGCTTG+TGG - chr5_3:54759223-54759242 None:intergenic 35.0%
TCTTAGTACAAGTGTGAAGA+AGG - chr5_3:54759250-54759269 None:intergenic 35.0%
AAAAGGAATGTCACTCTACA+TGG - chr5_3:54759552-54759571 None:intergenic 35.0%
! GCATTTTGAATCTTTAGGCA+TGG + chr5_3:54759797-54759816 Msa0818720:intron 35.0%
TTAGACAAATCAGAACAGGA+TGG + chr5_3:54759822-54759841 Msa0818720:CDS 35.0%
TAGACAAATCAGAACAGGAT+GGG + chr5_3:54759823-54759842 Msa0818720:CDS 35.0%
TGTACCTTCTTGTCCATTAA+TGG - chr5_3:54759915-54759934 None:intergenic 35.0%
! GATTATGTTCATGATGGAGA+TGG + chr5_3:54760325-54760344 Msa0818720:intron 35.0%
! TCATGATGGAGATGGTTTAA+CGG + chr5_3:54760333-54760352 Msa0818720:intron 35.0%
TACACTATTAATGGTCAACC+TGG + chr5_3:54760469-54760488 Msa0818720:CDS 35.0%
TTGCTTATAATAGTGATCGG+AGG + chr5_3:54760767-54760786 Msa0818720:intron 35.0%
! CACCTACTACTGTTAGTTTA+TGG - chr5_3:54760992-54761011 None:intergenic 35.0%
! ATGAGAACATTGGTTGTGAA+TGG - chr5_3:54761035-54761054 None:intergenic 35.0%
ACAACCAATGTTCTCATGTT+AGG + chr5_3:54761038-54761057 Msa0818720:CDS 35.0%
TTTGTATTCAAGAATGGCAG+TGG - chr5_3:54761177-54761196 None:intergenic 35.0%
TCATTGTAAGCAGGTAATGA+AGG - chr5_3:54761248-54761267 None:intergenic 35.0%
ATTGTTGAGTCCTAATCCAA+TGG - chr5_3:54761360-54761379 None:intergenic 35.0%
TGCAGGATTGAAAAATTGCT+AGG - chr5_3:54761470-54761489 None:intergenic 35.0%
!! TAGCAATTTTTCAATCCTGC+AGG + chr5_3:54761469-54761488 Msa0818720:CDS 35.0%
!! AGTACAAGGTGTTTTTACGA+CGG + chr5_3:54761505-54761524 Msa0818720:CDS 35.0%
GTAACTTTAGTCCCTTGAAT+CGG - chr5_3:54761596-54761615 None:intergenic 35.0%
! CTAAGTTGAGATTTGGATCA+AGG + chr5_3:54761615-54761634 Msa0818720:CDS 35.0%
AATCACCCTATTCATCTTCA+TGG + chr5_3:54761680-54761699 Msa0818720:CDS 35.0%
TATATTGTTGCTGAGGGATT+TGG + chr5_3:54761713-54761732 Msa0818720:CDS 35.0%
GAAATTGAGCTAATGTTACC+TGG - chr5_3:54761854-54761873 None:intergenic 35.0%
GAGACTAAGTACATGACTAA+AGG - chr5_3:54762023-54762042 None:intergenic 35.0%
GCAGTCAAATGAAATTGATG+TGG - chr5_3:54762224-54762243 None:intergenic 35.0%
GTTTGATGTATGTAGGTGTT+TGG + chr5_3:54762354-54762373 Msa0818720:intron 35.0%
TTGGATTATGCATTGTCACT+TGG + chr5_3:54762373-54762392 Msa0818720:CDS 35.0%
ATTGTTTGTTTCCCTGCATT+GGG + chr5_3:54762548-54762567 Msa0818720:three_prime_UTR 35.0%
GAAAAAAAATCCCCAATGCA+GGG - chr5_3:54762562-54762581 None:intergenic 35.0%
AGAAAAAAAATCCCCAATGC+AGG - chr5_3:54762563-54762582 None:intergenic 35.0%
AAACTCGTGCTCATGAACTT+TGG - chr5_3:54758827-54758846 None:intergenic 40.0%
CAAATGAGCATCACTGTGAA+TGG + chr5_3:54758989-54759008 Msa0818720:CDS 40.0%
ACTGTGAATGGACAATTTCC+TGG + chr5_3:54759001-54759020 Msa0818720:CDS 40.0%
ACAATTTCCTGGTCCAACTT+TGG + chr5_3:54759012-54759031 Msa0818720:CDS 40.0%
GGACATTGAGTCACAAATTC+TGG - chr5_3:54759857-54759876 None:intergenic 40.0%
TAACTTTCTCCAGGACGAAT+AGG - chr5_3:54759878-54759897 None:intergenic 40.0%
CTATAGGTGTAACTTTCTCC+AGG - chr5_3:54759887-54759906 None:intergenic 40.0%
! ATGGACAAGAAGGTACACTT+TGG + chr5_3:54759918-54759937 Msa0818720:CDS 40.0%
GATTAGAGCTCCATAAACTG+TGG - chr5_3:54759972-54759991 None:intergenic 40.0%
! AGCTCTAATCATTCACCCTA+AGG + chr5_3:54759982-54760001 Msa0818720:CDS 40.0%
CTAATCATTCACCCTAAGGA+AGG + chr5_3:54759986-54760005 Msa0818720:CDS 40.0%
GATAAGCATCTCCTTCCTTA+GGG - chr5_3:54760000-54760019 None:intergenic 40.0%
CTTGTCTCACAACATCCATA+GGG - chr5_3:54760411-54760430 None:intergenic 40.0%
CTTTACAAGTGCTCTACCAA+AGG + chr5_3:54760496-54760515 Msa0818720:CDS 40.0%
CATATGATCATTGGCAATGC+AGG + chr5_3:54760873-54760892 Msa0818720:intron 40.0%
!! CAGCATTGATTACTCTTAGG+AGG - chr5_3:54760935-54760954 None:intergenic 40.0%
!! GTGCAGCATTGATTACTCTT+AGG - chr5_3:54760938-54760957 None:intergenic 40.0%
GGTTGTGAATGGTTTGACAT+AGG - chr5_3:54761024-54761043 None:intergenic 40.0%
AGGTCCTAACATGAGAACAT+TGG - chr5_3:54761045-54761064 None:intergenic 40.0%
AATGTTCTCATGTTAGGACC+TGG + chr5_3:54761044-54761063 Msa0818720:CDS 40.0%
GGATTAGAACATCAGTGGTT+TGG - chr5_3:54761070-54761089 None:intergenic 40.0%
ACCACTGATGTTCTAATCCA+AGG + chr5_3:54761071-54761090 Msa0818720:CDS 40.0%
! ACCTTGGATTAGAACATCAG+TGG - chr5_3:54761075-54761094 None:intergenic 40.0%
!! TGTAGTATCTTGATGGTGGT+TGG - chr5_3:54761100-54761119 None:intergenic 40.0%
! GTGTTTGTGTCATTGTAAGC+AGG - chr5_3:54761257-54761276 None:intergenic 40.0%
AATCAATGTCAAGGACCGAA+CGG + chr5_3:54761401-54761420 Msa0818720:CDS 40.0%
GCTCATAAACTTGGAGTACA+AGG + chr5_3:54761491-54761510 Msa0818720:CDS 40.0%
ACCGGTGTAATCAAATTGCA+CGG - chr5_3:54761549-54761568 None:intergenic 40.0%
ATTACACCGGTAATGTGAGT+CGG + chr5_3:54761558-54761577 Msa0818720:CDS 40.0%
AGATGAATAGGGTGATTCTC+AGG - chr5_3:54761677-54761696 None:intergenic 40.0%
ACTGTTGCTGTACCTGTTAA+TGG + chr5_3:54761797-54761816 Msa0818720:CDS 40.0%
TTGCTGTACCTGTTAATGGT+TGG + chr5_3:54761801-54761820 Msa0818720:CDS 40.0%
TGCTGTACCTGTTAATGGTT+GGG + chr5_3:54761802-54761821 Msa0818720:CDS 40.0%
ATAACTGCCCAACCATTAAC+AGG - chr5_3:54761812-54761831 None:intergenic 40.0%
!! AGATTTGTTGCTGACAATCC+AGG + chr5_3:54761833-54761852 Msa0818720:CDS 40.0%
! TGTTTCTGTGACCATAACTG+AGG + chr5_3:54762198-54762217 Msa0818720:intron 40.0%
AATTGATGTGGCCTCAGTTA+TGG - chr5_3:54762212-54762231 None:intergenic 40.0%
CAGGACCAAGTATCTATATG+CGG + chr5_3:54762253-54762272 Msa0818720:intron 40.0%
GCGGTTGCGATATAAAACTT+TGG + chr5_3:54762272-54762291 Msa0818720:intron 40.0%
! TGTCACTTGGATGTTCACAT+TGG + chr5_3:54762386-54762405 Msa0818720:CDS 40.0%
ACTTGGATGTTCACATTGGA+TGG + chr5_3:54762390-54762409 Msa0818720:CDS 40.0%
CTTGGATGTTCACATTGGAT+GGG + chr5_3:54762391-54762410 Msa0818720:CDS 40.0%
TTGGATGTTCACATTGGATG+GGG + chr5_3:54762392-54762411 Msa0818720:CDS 40.0%
!!! ACTGTGTTTTTGGTAGAGGA+TGG + chr5_3:54762422-54762441 Msa0818720:CDS 40.0%
!! TTTTTGGTAGAGGATGGAGA+AGG + chr5_3:54762428-54762447 Msa0818720:CDS 40.0%
! TTTTGGTAGAGGATGGAGAA+GGG + chr5_3:54762429-54762448 Msa0818720:CDS 40.0%
GATTATCCTAACACAAAGGC+AGG - chr5_3:54762487-54762506 None:intergenic 40.0%
CATTGTTTGTTTCCCTGCAT+TGG + chr5_3:54762547-54762566 Msa0818720:three_prime_UTR 40.0%
TTGTTTGTTTCCCTGCATTG+GGG + chr5_3:54762549-54762568 Msa0818720:three_prime_UTR 40.0%
GATAGTGTCACAAACCCTAT+TGG + chr5_3:54762672-54762691 Msa0818720:three_prime_UTR 40.0%
TACAAGCAACTCCAGTGAAG+AGG + chr5_3:54758954-54758973 Msa0818720:CDS 45.0%
GGGGTTAGACAAATCAGAAC+AGG + chr5_3:54759818-54759837 Msa0818720:CDS 45.0%
ACTCAATGTCCTATTCGTCC+TGG + chr5_3:54759866-54759885 Msa0818720:CDS 45.0%
! GACAAGAAGGTACACTTTGG+TGG + chr5_3:54759921-54759940 Msa0818720:CDS 45.0%
TGGCTTAGAGCCACAGTTTA+TGG + chr5_3:54759959-54759978 Msa0818720:CDS 45.0%
GGATAAGCATCTCCTTCCTT+AGG - chr5_3:54760001-54760020 None:intergenic 45.0%
! TCACGCTTTGGCTTAGTGAA+AGG - chr5_3:54760022-54760041 None:intergenic 45.0%
AGAATGGGTGTTTCACGCTT+TGG - chr5_3:54760034-54760053 None:intergenic 45.0%
CGTGAAACACCCATTCTTCT+AGG + chr5_3:54760037-54760056 Msa0818720:CDS 45.0%
GCTTGTCTCACAACATCCAT+AGG - chr5_3:54760412-54760431 None:intergenic 45.0%
GAGCACTTGTAAAGATCACC+AGG - chr5_3:54760490-54760509 None:intergenic 45.0%
GCGATGTAGTATCTTGATGG+TGG - chr5_3:54761104-54761123 None:intergenic 45.0%
CCATCAAGATACTACATCGC+CGG + chr5_3:54761104-54761123 Msa0818720:CDS 45.0%
CATCAAGATACTACATCGCC+GGG + chr5_3:54761105-54761124 Msa0818720:CDS 45.0%
ATCATCACCTTGTCCTGCAA+AGG + chr5_3:54761196-54761215 Msa0818720:CDS 45.0%
TCATCACCTTGTCCTGCAAA+GGG + chr5_3:54761197-54761216 Msa0818720:CDS 45.0%
! GCAGGTAATGAAGGCATGAT+TGG - chr5_3:54761239-54761258 None:intergenic 45.0%
ATCCTGCAGGCTCATAAACT+TGG + chr5_3:54761482-54761501 Msa0818720:CDS 45.0%
!! AATTGCACGGGAGGTTTTGT+GGG - chr5_3:54761536-54761555 None:intergenic 45.0%
! AAATTGCACGGGAGGTTTTG+TGG - chr5_3:54761537-54761556 None:intergenic 45.0%
GTGTAATCAAATTGCACGGG+AGG - chr5_3:54761545-54761564 None:intergenic 45.0%
CCGGTGTAATCAAATTGCAC+GGG - chr5_3:54761548-54761567 None:intergenic 45.0%
CCCGTGCAATTTGATTACAC+CGG + chr5_3:54761545-54761564 Msa0818720:CDS 45.0%
! CAATGACCGACTCACATTAC+CGG - chr5_3:54761567-54761586 None:intergenic 45.0%
GTAATGTGAGTCGGTCATTG+TGG + chr5_3:54761567-54761586 Msa0818720:CDS 45.0%
! TCATTGTGGCAACCGATTCA+AGG + chr5_3:54761581-54761600 Msa0818720:CDS 45.0%
! CATTGTGGCAACCGATTCAA+GGG + chr5_3:54761582-54761601 Msa0818720:CDS 45.0%
GAGATTTGGATCAAGGGTTC+AGG + chr5_3:54761622-54761641 Msa0818720:CDS 45.0%
ACCTTGTTGATCCACCTATG+AGG + chr5_3:54761771-54761790 Msa0818720:CDS 45.0%
TCCTCATAGGTGGATCAACA+AGG - chr5_3:54761775-54761794 None:intergenic 45.0%
ACAGCAACAGTGTTCCTCAT+AGG - chr5_3:54761788-54761807 None:intergenic 45.0%
ATTTGACTGCGATTCTCTGC+AGG + chr5_3:54762234-54762253 Msa0818720:intron 45.0%
CGCAACCGCATATAGATACT+TGG - chr5_3:54762261-54762280 None:intergenic 45.0%
TGTTCACATTGGATGGGGTT+TGG + chr5_3:54762397-54762416 Msa0818720:CDS 45.0%
! GGGTTTGGCTACTGTGTTTT+TGG + chr5_3:54762412-54762431 Msa0818720:CDS 45.0%
!!! GGCTACTGTGTTTTTGGTAG+AGG + chr5_3:54762418-54762437 Msa0818720:CDS 45.0%
GGGTTTGTGACACTATCAGA+TGG - chr5_3:54762669-54762688 None:intergenic 45.0%
!! ATTGTATAAAAAATATAATT+AGG + chr5_3:54761882-54761901 Msa0818720:intron 5.0%
!! TTGTATAAAAAATATAATTA+GGG + chr5_3:54761883-54761902 Msa0818720:intron 5.0%
!! TGTAAAAATTAATAAAAATA+GGG - chr5_3:54761990-54762009 None:intergenic 5.0%
!! TTGTAAAAATTAATAAAAAT+AGG - chr5_3:54761991-54762010 None:intergenic 5.0%
!!! TTTTATTAATTTTTACAAAA+TGG + chr5_3:54761993-54762012 Msa0818720:intron 5.0%
!!! AAAAAATTGTAAATTTTATA+GGG + chr5_3:54762097-54762116 Msa0818720:intron 5.0%
!! ATCAGAACAGGATGGGCTGA+TGG + chr5_3:54759830-54759849 Msa0818720:CDS 50.0%
GGTGGCATGCTCATAGTTCA+TGG + chr5_3:54759939-54759958 Msa0818720:CDS 50.0%
! ATGGTGGGATGCAAACCCTA+TGG + chr5_3:54760393-54760412 Msa0818720:CDS 50.0%
GTGAGACAAGCCACACAAAC+AGG + chr5_3:54760421-54760440 Msa0818720:CDS 50.0%
! AGAACATCAGTGGTTTGGCC+AGG - chr5_3:54761065-54761084 None:intergenic 50.0%
!! TTGATGGTGGTTGGTCACCT+TGG - chr5_3:54761091-54761110 None:intergenic 50.0%
CCGGCGATGTAGTATCTTGA+TGG - chr5_3:54761107-54761126 None:intergenic 50.0%
! ACGCAGCATTTTGAGCCGAT+TGG - chr5_3:54761139-54761158 None:intergenic 50.0%
CATCACCTTGTCCTGCAAAG+GGG + chr5_3:54761198-54761217 Msa0818720:CDS 50.0%
ATCACCTTGTCCTGCAAAGG+GGG + chr5_3:54761199-54761218 Msa0818720:CDS 50.0%
ATATTTGCACCCCCCTTTGC+AGG - chr5_3:54761212-54761231 None:intergenic 50.0%
GAAGTGAACCGTGTACCGTT+CGG - chr5_3:54761419-54761438 None:intergenic 50.0%
CTCCAAGTTTATGAGCCTGC+AGG - chr5_3:54761487-54761506 None:intergenic 50.0%
GCAACAGTGTTCCTCATAGG+TGG - chr5_3:54761785-54761804 None:intergenic 50.0%
AGAGGATGGAGAAGGGCTAT+TGG + chr5_3:54762436-54762455 Msa0818720:CDS 50.0%
TAACACAAAGGCAGGTCCTC+AGG - chr5_3:54762479-54762498 None:intergenic 50.0%
TGAGGACCTGCCTTTGTGTT+AGG + chr5_3:54762478-54762497 Msa0818720:CDS 50.0%
GTGTTGCACAGCCTCTTCAC+TGG - chr5_3:54758968-54758987 None:intergenic 55.0%
TGGAGCTGCTCCTGTTTGTG+TGG - chr5_3:54760434-54760453 None:intergenic 55.0%
TCACCTTGTCCTGCAAAGGG+GGG + chr5_3:54761200-54761219 Msa0818720:CDS 55.0%
GTCAAGGACCGAACGGTACA+CGG + chr5_3:54761408-54761427 Msa0818720:CDS 55.0%
GTCCATAGAAGCTCCTCCTG+AGG + chr5_3:54762460-54762479 Msa0818720:CDS 55.0%
GTCCTCAGGAGGAGCTTCTA+TGG - chr5_3:54762465-54762484 None:intergenic 55.0%
CACAAAGGCAGGTCCTCAGG+AGG - chr5_3:54762476-54762495 None:intergenic 60.0%
AGCCGATTGGTAAGCGCGCC+CGG - chr5_3:54761126-54761145 None:intergenic 65.0%
GCACCCCCCTTTGCAGGACA+AGG - chr5_3:54761206-54761225 None:intergenic 65.0%
CGCCGGGCGCGCTTACCAAT+CGG + chr5_3:54761121-54761140 Msa0818720:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 54758694 54762805 54758694 ID=Msa0818720;Name=Msa0818720
chr5_3 mRNA 54758694 54762805 54758694 ID=Msa0818720-mRNA-1;Parent=Msa0818720;Name=Msa0818720-mRNA-1;_AED=0.05;_eAED=0.05;_QI=69|1|1|1|1|1|6|306|567
chr5_3 exon 54758694 54758849 54758694 ID=Msa0818720-mRNA-1:exon:16596;Parent=Msa0818720-mRNA-1
chr5_3 exon 54758953 54759104 54758953 ID=Msa0818720-mRNA-1:exon:16597;Parent=Msa0818720-mRNA-1
chr5_3 exon 54759814 54760058 54759814 ID=Msa0818720-mRNA-1:exon:16598;Parent=Msa0818720-mRNA-1
chr5_3 exon 54760389 54760517 54760389 ID=Msa0818720-mRNA-1:exon:16599;Parent=Msa0818720-mRNA-1
chr5_3 exon 54760895 54761854 54760895 ID=Msa0818720-mRNA-1:exon:16600;Parent=Msa0818720-mRNA-1
chr5_3 exon 54762369 54762805 54762369 ID=Msa0818720-mRNA-1:exon:16601;Parent=Msa0818720-mRNA-1
chr5_3 five_prime_UTR 54758694 54758762 54758694 ID=Msa0818720-mRNA-1:five_prime_utr;Parent=Msa0818720-mRNA-1
chr5_3 CDS 54758763 54758849 54758763 ID=Msa0818720-mRNA-1:cds;Parent=Msa0818720-mRNA-1
chr5_3 CDS 54758953 54759104 54758953 ID=Msa0818720-mRNA-1:cds;Parent=Msa0818720-mRNA-1
chr5_3 CDS 54759814 54760058 54759814 ID=Msa0818720-mRNA-1:cds;Parent=Msa0818720-mRNA-1
chr5_3 CDS 54760389 54760517 54760389 ID=Msa0818720-mRNA-1:cds;Parent=Msa0818720-mRNA-1
chr5_3 CDS 54760895 54761854 54760895 ID=Msa0818720-mRNA-1:cds;Parent=Msa0818720-mRNA-1
chr5_3 CDS 54762369 54762499 54762369 ID=Msa0818720-mRNA-1:cds;Parent=Msa0818720-mRNA-1
chr5_3 three_prime_UTR 54762500 54762805 54762500 ID=Msa0818720-mRNA-1:three_prime_utr;Parent=Msa0818720-mRNA-1
Gene Sequence

>Msa0818720

ATGGAAGCTTTCAACACCATCTTCTTAGCAATTTTTCTTCTCTTGGCTTCTTTAGCTAATGCCAAAGTTCATGAGCACGAGTTTGTCGTACAAGCAACTCCAGTGAAGAGGCTGTGCAACACACAAATGAGCATCACTGTGAATGGACAATTTCCTGGTCCAACTTTGGAAATTAATAATGGAGATACTTTGGTTGTCAAAGTCATTAACAAAGCTCGTTACAATGTCACCATTCATTGGCATGGGGTTAGACAAATCAGAACAGGATGGGCTGATGGACCAGAATTTGTGACTCAATGTCCTATTCGTCCTGGAGAAAGTTACACCTATAGATTTACCATTAATGGACAAGAAGGTACACTTTGGTGGCATGCTCATAGTTCATGGCTTAGAGCCACAGTTTATGGAGCTCTAATCATTCACCCTAAGGAAGGAGATGCTTATCCTTTCACTAAGCCAAAGCGTGAAACACCCATTCTTCTAGGGGAATGGTGGGATGCAAACCCTATGGATGTTGTGAGACAAGCCACACAAACAGGAGCAGCTCCAAATATATCTGATGCATACACTATTAATGGTCAACCTGGTGATCTTTACAAGTGCTCTACCAAAGGCACAACAATTGTTCCAATTGATTCAGGAGAAACAAACCTCCTAAGAGTAATCAATGCTGCACTAAATCAACCTCTTTTCTTCACAATTGCAAACCATAAACTAACAGTAGTAGGTGCTGATGCTTCCTATGTCAAACCATTCACAACCAATGTTCTCATGTTAGGACCTGGCCAAACCACTGATGTTCTAATCCAAGGTGACCAACCACCATCAAGATACTACATCGCCGGGCGCGCTTACCAATCGGCTCAAAATGCTGCGTTCGATAACACAACAACCACTGCCATTCTTGAATACAAATCATCACCTTGTCCTGCAAAGGGGGGTGCAAATATCAGACCAATCATGCCTTCATTACCTGCTTACAATGACACAAACACTGTTACATCATTTAGTAAAAGCTTTAGAAGTTTAAGGAATGTTGAAGTTCCTAATGAAATTGATGAAGATCTTTTCTTTACCATTGGATTAGGACTCAACAATTGTCCATCGAATTTTAATGCAAATCAATGTCAAGGACCGAACGGTACACGGTTCACTTCTAGTATGAACAATGTGTCTTTTGTACTTCCTAGCAATTTTTCAATCCTGCAGGCTCATAAACTTGGAGTACAAGGTGTTTTTACGACGGATTTTCCCACAAAACCTCCCGTGCAATTTGATTACACCGGTAATGTGAGTCGGTCATTGTGGCAACCGATTCAAGGGACTAAAGTTACTAAGTTGAGATTTGGATCAAGGGTTCAGGTTGTTTTGCAAGATACTAGTATTGTTACTCCTGAGAATCACCCTATTCATCTTCATGGATATGATTTCTATATTGTTGCTGAGGGATTTGGAAATTATGACCCTAAGAAAGATGCTTCAAAATTTAACCTTGTTGATCCACCTATGAGGAACACTGTTGCTGTACCTGTTAATGGTTGGGCAGTTATCAGATTTGTTGCTGACAATCCAGGTGTTTGGATTATGCATTGTCACTTGGATGTTCACATTGGATGGGGTTTGGCTACTGTGTTTTTGGTAGAGGATGGAGAAGGGCTATTGGAGTCCATAGAAGCTCCTCCTGAGGACCTGCCTTTGTGTTAG
Protein sequence

>Msa0818720

MEAFNTIFLAIFLLLASLANAKVHEHEFVVQATPVKRLCNTQMSITVNGQFPGPTLEINNGDTLVVKVINKARYNVTIHWHGVRQIRTGWADGPEFVTQCPIRPGESYTYRFTINGQEGTLWWHAHSSWLRATVYGALIIHPKEGDAYPFTKPKRETPILLGEWWDANPMDVVRQATQTGAAPNISDAYTINGQPGDLYKCSTKGTTIVPIDSGETNLLRVINAALNQPLFFTIANHKLTVVGADASYVKPFTTNVLMLGPGQTTDVLIQGDQPPSRYYIAGRAYQSAQNAAFDNTTTTAILEYKSSPCPAKGGANIRPIMPSLPAYNDTNTVTSFSKSFRSLRNVEVPNEIDEDLFFTIGLGLNNCPSNFNANQCQGPNGTRFTSSMNNVSFVLPSNFSILQAHKLGVQGVFTTDFPTKPPVQFDYTGNVSRSLWQPIQGTKVTKLRFGSRVQVVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNYDPKKDASKFNLVDPPMRNTVAVPVNGWAVIRFVADNPGVWIMHCHLDVHIGWGLATVFLVEDGEGLLESIEAPPEDLPLC*