Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858010 | ACJ83951.1 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 1.17e-75 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858010 | sp|Q9C912|R35A3_ARATH | 88.393 | 112 | 13 | 0 | 1 | 112 | 1 | 112 | 9.91e-72 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858010 | B7FGS2 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 5.58e-76 | 229 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0705800 | Msa0858010 | 0.816144 | 6.432336e-52 | -8.615850e-47 |
| Msa0822580 | Msa0858010 | 0.837155 | 6.142269e-57 | -8.615850e-47 |
| Msa0168320 | Msa0858010 | 0.801690 | 7.995234e-49 | -8.615850e-47 |
| Msa0191450 | Msa0858010 | 0.806522 | 7.896137e-50 | -8.615850e-47 |
| Msa0858010 | Msa1218170 | 0.842230 | 2.935110e-58 | -8.615850e-47 |
| Msa0858010 | Msa1240270 | 0.816551 | 5.216253e-52 | -8.615850e-47 |
| Msa0858010 | Msa1301640 | 0.870279 | 1.644887e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858010 | MtrunA17_Chr5g0436331 | 100.000 | 112 | 0 | 0 | 1 | 112 | 26 | 137 | 1.58e-79 | 229 |
| Msa0858010 | MtrunA17_Chr7g0268051 | 94.643 | 112 | 6 | 0 | 1 | 112 | 1 | 112 | 3.00e-77 | 223 |
| Msa0858010 | MtrunA17_Chr7g0268081 | 83.333 | 90 | 15 | 0 | 18 | 107 | 10 | 99 | 7.37e-52 | 158 |
| Msa0858010 | MtrunA17_Chr7g0268061 | 83.333 | 90 | 15 | 0 | 18 | 107 | 10 | 99 | 7.37e-52 | 158 |
| Msa0858010 | MtrunA17_Chr7g0268071 | 93.671 | 79 | 5 | 0 | 21 | 99 | 12 | 90 | 1.44e-51 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0858010 | AT1G74270.1 | 88.393 | 112 | 13 | 0 | 1 | 112 | 1 | 112 | 1.01e-72 | 212 |
| Msa0858010 | AT1G07070.1 | 87.500 | 112 | 14 | 0 | 1 | 112 | 1 | 112 | 1.03e-72 | 212 |
| Msa0858010 | AT3G55750.1 | 89.189 | 111 | 12 | 0 | 2 | 112 | 1 | 111 | 6.95e-72 | 209 |
| Msa0858010 | AT1G41880.1 | 88.288 | 111 | 13 | 0 | 2 | 112 | 1 | 111 | 9.99e-72 | 209 |
| Msa0858010 | AT1G41880.2 | 88.288 | 111 | 13 | 0 | 2 | 112 | 1 | 111 | 9.99e-72 | 209 |
Find 55 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAGTAATTATAGGTAAT+TGG | 0.232438 | 5_4:-55041065 | None:intergenic |
| GAGGAGCTCCATTTGAGATT+TGG | 0.298287 | 5_4:-55040984 | None:intergenic |
| CATCTTCGCACCAATCAAAA+TGG | 0.306966 | 5_4:+55037966 | Msa0858010:exon |
| GCACCAATCAAAATGGTTAA+AGG | 0.315193 | 5_4:+55037973 | Msa0858010:exon |
| TATGTCAGGGGCACAGTTCT+TGG | 0.316095 | 5_4:+55038120 | Msa0858010:CDS |
| TTACAAGGCCAAGGTGAAAA+AGG | 0.324778 | 5_4:+55038815 | Msa0858010:CDS |
| GTAGCCACTATCGCTGCATT+TGG | 0.329880 | 5_4:+55038841 | Msa0858010:CDS |
| ATTTGTTTGTGCAGGGAGCC+AGG | 0.348132 | 5_4:+55039023 | Msa0858010:intron |
| GAATTCAACATCCTAGAAAA+AGG | 0.352289 | 5_4:-55040903 | None:intergenic |
| TAGCCACTATCGCTGCATTT+GGG | 0.375359 | 5_4:+55038842 | Msa0858010:CDS |
| ATGTATCCAAGCAATATATA+AGG | 0.407008 | 5_4:+55039058 | Msa0858010:CDS |
| AAATTACCTTATATATTGCT+TGG | 0.412163 | 5_4:-55039064 | None:intergenic |
| ATCTGAACAAGAGAGGTGTT+TGG | 0.416693 | 5_4:-55038732 | None:intergenic |
| GAGGAGGTTGCATGGTATGC+TGG | 0.417733 | 5_4:+55038774 | Msa0858010:CDS |
| CTATCGCTGCATTTGGGGTA+AGG | 0.428656 | 5_4:+55038848 | Msa0858010:CDS |
| AATGCAAAGACAACCAAAAC+AGG | 0.438347 | 5_4:-55040846 | None:intergenic |
| CACAAAAGAACAAAATTAAG+AGG | 0.439643 | 5_4:-55041003 | None:intergenic |
| TCTGAACAAGAGAGGTGTTT+GGG | 0.453404 | 5_4:-55038731 | None:intergenic |
| GACGTCAAGGAGAACGCATC+AGG | 0.461646 | 5_4:+55037995 | Msa0858010:CDS |
| TACCCCAAATGCAGCGATAG+TGG | 0.462856 | 5_4:-55038845 | None:intergenic |
| GTTTGGGTATTGATTTACCT+TGG | 0.466066 | 5_4:-55038715 | None:intergenic |
| ATGGTATGCTGGGAAGAAAT+TGG | 0.469927 | 5_4:+55038785 | Msa0858010:CDS |
| TGTTTAGTCCAAATCTCAAA+TGG | 0.495493 | 5_4:+55040976 | Msa0858010:three_prime_UTR |
| ACCTCTCTTGTTCAGATCGA+GGG | 0.499812 | 5_4:+55038738 | Msa0858010:CDS |
| GCATTTGGGGTAAGGTTACC+AGG | 0.512393 | 5_4:+55038856 | Msa0858010:CDS |
| ATACCATGCAACCTCCTCCT+TGG | 0.519241 | 5_4:-55038769 | None:intergenic |
| AGGAGGTTGCATGGTATGCT+GGG | 0.527652 | 5_4:+55038775 | Msa0858010:CDS |
| TTTGTTTGTGCAGGGAGCCA+GGG | 0.534698 | 5_4:+55039024 | Msa0858010:intron |
| CTGTCTCTGTAGTGTTCGTT+CGG | 0.535448 | 5_4:-55037931 | None:intergenic |
| TTTAATCAGGCTTTATGTCA+GGG | 0.536616 | 5_4:+55038107 | Msa0858010:intron |
| TAACCTACCACCAAAATCAA+TGG | 0.539094 | 5_4:+55038920 | Msa0858010:CDS |
| GTAATGTTGTTATAGGTCCA+AGG | 0.544802 | 5_4:+55038698 | Msa0858010:intron |
| ACCACTGTTACCATGAGGCC+TGG | 0.545885 | 5_4:-55038874 | None:intergenic |
| CCTACAGCCAGCAGTTGGAT+AGG | 0.547101 | 5_4:+55040803 | Msa0858010:three_prime_UTR |
| GGCATACATTTACAAGGCCA+AGG | 0.547418 | 5_4:+55038806 | Msa0858010:CDS |
| GAAATTGGCATACATTTACA+AGG | 0.562532 | 5_4:+55038800 | Msa0858010:CDS |
| TCAATGACCTATCCAACTGC+TGG | 0.564480 | 5_4:-55040810 | None:intergenic |
| ATACATAAATACTCTAACCC+TGG | 0.583670 | 5_4:-55039041 | None:intergenic |
| GGTAAGGTTACCAGGCCTCA+TGG | 0.585246 | 5_4:+55038864 | Msa0858010:CDS |
| TCTCTGTAGTGTTCGTTCGG+CGG | 0.590287 | 5_4:-55037928 | None:intergenic |
| CACCTCTCTTGTTCAGATCG+AGG | 0.592183 | 5_4:+55038737 | Msa0858010:CDS |
| ACACCAAGGAGGAGGTTGCA+TGG | 0.606757 | 5_4:+55038766 | Msa0858010:CDS |
| TTAATCAGGCTTTATGTCAG+GGG | 0.608287 | 5_4:+55038108 | Msa0858010:intron |
| AAAATGGTTAAAGGACGTCA+AGG | 0.620787 | 5_4:+55037982 | Msa0858010:exon |
| GGTTAGACTTGAACTTTGCG+CGG | 0.621246 | 5_4:-55038902 | None:intergenic |
| CCTATCCAACTGCTGGCTGT+AGG | 0.622417 | 5_4:-55040803 | None:intergenic |
| AGCCACTATCGCTGCATTTG+GGG | 0.630179 | 5_4:+55038843 | Msa0858010:CDS |
| TGGTACCTACAGCCAGCAGT+TGG | 0.633403 | 5_4:+55040798 | Msa0858010:three_prime_UTR |
| CCTCTCTTGTTCAGATCGAG+GGG | 0.637714 | 5_4:+55038739 | Msa0858010:CDS |
| GCACAGTTCTTGGATACAAG+AGG | 0.637980 | 5_4:+55038130 | Msa0858010:CDS |
| CCCCTCGATCTGAACAAGAG+AGG | 0.655801 | 5_4:-55038739 | None:intergenic |
| AACGAACACTACAGAGACAG+AGG | 0.665928 | 5_4:+55037934 | Msa0858010:five_prime_UTR |
| ACCAGGCCTCATGGTAACAG+TGG | 0.672394 | 5_4:+55038873 | Msa0858010:CDS |
| CTCTCTTGTTCAGATCGAGG+GGG | 0.711001 | 5_4:+55038740 | Msa0858010:CDS |
| ACAATACCACTGTTACCATG+AGG | 0.737809 | 5_4:-55038879 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACTAATTAAATCTAATT+TGG | + | chr5_4:55038229-55038248 | Msa0858010:intron | 10.0% |
| !! | AAACTAATTAAATCTAATTT+GGG | + | chr5_4:55038230-55038249 | Msa0858010:intron | 10.0% |
| !!! | TAATATATAATTTTTTTAGC+TGG | + | chr5_4:55038275-55038294 | Msa0858010:intron | 10.0% |
| !!! | AATATATAATTTTTTTAGCT+GGG | + | chr5_4:55038276-55038295 | Msa0858010:intron | 10.0% |
| !!! | ACATTATAAATTAATTTTTC+AGG | - | chr5_4:55040249-55040268 | None:intergenic | 10.0% |
| !! | AATAAAATCAAAAGAGTTAA+AGG | - | chr5_4:55038048-55038067 | None:intergenic | 15.0% |
| !! | ATTATTTGTAATGTTGTTAT+AGG | + | chr5_4:55038691-55038710 | Msa0858010:intron | 15.0% |
| !!! | ATTTTTTGAAGACATTTAAA+TGG | + | chr5_4:55038945-55038964 | Msa0858010:intron | 15.0% |
| !!! | TAATTTCACCATTTTATTAA+TGG | + | chr5_4:55039081-55039100 | Msa0858010:intron | 15.0% |
| !! | TTAAATTGAAGTAAAAAATG+TGG | - | chr5_4:55039800-55039819 | None:intergenic | 15.0% |
| !!! | ATTTTCATAAAACAGAAATA+AGG | - | chr5_4:55040045-55040064 | None:intergenic | 15.0% |
| !!! | TTCATTTTGTGTTTTTAATC+AGG | + | chr5_4:55038094-55038113 | Msa0858010:intron | 20.0% |
| !! | AGGGTGAAAAATTATATATT+TGG | - | chr5_4:55038632-55038651 | None:intergenic | 20.0% |
| !! | ATCAAAATCAAAAACTACTA+GGG | - | chr5_4:55038651-55038670 | None:intergenic | 20.0% |
| !!! | CAAAAAATTACCATTGATTT+TGG | - | chr5_4:55038933-55038952 | None:intergenic | 20.0% |
| !! | AAATTACCTTATATATTGCT+TGG | - | chr5_4:55039067-55039086 | None:intergenic | 20.0% |
| !! | GTTAACAACCATTAATAAAA+TGG | - | chr5_4:55039092-55039111 | None:intergenic | 20.0% |
| !! | TGGTTGTTAACTTTATATAT+AGG | + | chr5_4:55039101-55039120 | Msa0858010:intron | 20.0% |
| !! | AACACAATGAAGTTTAAATA+GGG | - | chr5_4:55039487-55039506 | None:intergenic | 20.0% |
| !! | TATTTAAACTTCATTGTGTT+GGG | + | chr5_4:55039487-55039506 | Msa0858010:intron | 20.0% |
| !! | ATATCAAAGATCAATTAAGT+GGG | - | chr5_4:55039541-55039560 | None:intergenic | 20.0% |
| !! | AATATCAAAGATCAATTAAG+TGG | - | chr5_4:55039542-55039561 | None:intergenic | 20.0% |
| !! | AATTGATCTTTGATATTTGT+CGG | + | chr5_4:55039545-55039564 | Msa0858010:intron | 20.0% |
| !! | ATCTTAGAAACTATAAAACT+TGG | - | chr5_4:55039604-55039623 | None:intergenic | 20.0% |
| !!! | TTTTTTTAGCTGGGTTTTAT+TGG | + | chr5_4:55038285-55038304 | Msa0858010:intron | 25.0% |
| !!! | GAAATGTTTAATGTTTTAGC+TGG | + | chr5_4:55038314-55038333 | Msa0858010:intron | 25.0% |
| ! | TTTAAGAACAAGACTCAATT+TGG | + | chr5_4:55038424-55038443 | Msa0858010:intron | 25.0% |
| !! | TATTTTATCGAGGATACATT+GGG | - | chr5_4:55038470-55038489 | None:intergenic | 25.0% |
| !! | ATATTTTATCGAGGATACAT+TGG | - | chr5_4:55038471-55038490 | None:intergenic | 25.0% |
| !! | TTGGGTATTATATTTTATCG+AGG | - | chr5_4:55038480-55038499 | None:intergenic | 25.0% |
| !! | TCTGGGTATTAATTTTTGTA+TGG | + | chr5_4:55038575-55038594 | Msa0858010:intron | 25.0% |
| ! | CATCAAAATCAAAAACTACT+AGG | - | chr5_4:55038652-55038671 | None:intergenic | 25.0% |
| !!! | TTTTGATTTTGATGTTGATC+TGG | + | chr5_4:55038658-55038677 | Msa0858010:intron | 25.0% |
| !!! | TTTGATTTTGATGTTGATCT+GGG | + | chr5_4:55038659-55038678 | Msa0858010:intron | 25.0% |
| !!! | AAAATTACCATTGATTTTGG+TGG | - | chr5_4:55038930-55038949 | None:intergenic | 25.0% |
| !!! | CTTTTTCACAAACTGTTTTA+TGG | + | chr5_4:55038979-55038998 | Msa0858010:intron | 25.0% |
| !!! | TTTATGGTTTCTGAAAGTTT+TGG | + | chr5_4:55038995-55039014 | Msa0858010:intron | 25.0% |
| ! | ATGTATCCAAGCAATATATA+AGG | + | chr5_4:55039058-55039077 | Msa0858010:CDS | 25.0% |
| !!! | ACTCTTGGTTTAAGATTTTT+AGG | + | chr5_4:55039163-55039182 | Msa0858010:intron | 25.0% |
| !!! | CTCTTGGTTTAAGATTTTTA+GGG | + | chr5_4:55039164-55039183 | Msa0858010:intron | 25.0% |
| ! | CAACAATTGAATCATAACAA+TGG | - | chr5_4:55039190-55039209 | None:intergenic | 25.0% |
| !! | AATTCTAGAGAAACAGAAAT+GGG | - | chr5_4:55039297-55039316 | None:intergenic | 25.0% |
| !!! | AGTCTGTTTTTTATATCCAT+AGG | + | chr5_4:55039326-55039345 | Msa0858010:intron | 25.0% |
| ! | ACAATATAAACAATCAGTTG+AGG | - | chr5_4:55039438-55039457 | None:intergenic | 25.0% |
| ! | CAACTGATTGTTTATATTGT+TGG | + | chr5_4:55039438-55039457 | Msa0858010:intron | 25.0% |
| !!! | TTTATATTGTTGGCTTTCTT+TGG | + | chr5_4:55039448-55039467 | Msa0858010:intron | 25.0% |
| ! | CAACACAATGAAGTTTAAAT+AGG | - | chr5_4:55039488-55039507 | None:intergenic | 25.0% |
| ! | CTATTTAAACTTCATTGTGT+TGG | + | chr5_4:55039486-55039505 | Msa0858010:intron | 25.0% |
| ! | ATTGATCTTTGATATTTGTC+GGG | + | chr5_4:55039546-55039565 | Msa0858010:intron | 25.0% |
| !!! | TTTCTAAGATTTTATGTGTG+CGG | + | chr5_4:55039614-55039633 | Msa0858010:intron | 25.0% |
| !!! | AATTTGTAAGCCAGTTTTAT+TGG | - | chr5_4:55039697-55039716 | None:intergenic | 25.0% |
| ! | CTATTTCAACTTAATGAGAA+AGG | - | chr5_4:55039763-55039782 | None:intergenic | 25.0% |
| ! | GTTTAACAAAAATTGTTTCC+AGG | + | chr5_4:55040130-55040149 | Msa0858010:intron | 25.0% |
| !!! | TATATACTGATTCCTTACAT+TGG | + | chr5_4:55040425-55040444 | Msa0858010:intron | 25.0% |
| !!! | ATATACTGATTCCTTACATT+GGG | + | chr5_4:55040426-55040445 | Msa0858010:intron | 25.0% |
| ! | TTAGATCATTTCTTGTTAGT+TGG | + | chr5_4:55040459-55040478 | Msa0858010:intron | 25.0% |
| ! | CATTAAAGAAACAATTCACT+TGG | - | chr5_4:55040589-55040608 | None:intergenic | 25.0% |
| ! | TGTACCAATTTATGATCATT+AGG | + | chr5_4:55040607-55040626 | Msa0858010:intron | 25.0% |
| ! | GTACCAATTTATGATCATTA+GGG | + | chr5_4:55040608-55040627 | Msa0858010:intron | 25.0% |
| ! | AGAATAAGAGAATGATTCTA+TGG | - | chr5_4:55040717-55040736 | None:intergenic | 25.0% |
| !! | CATTCCTAATCTTTGAATTT+TGG | + | chr5_4:55040754-55040773 | Msa0858010:intron | 25.0% |
| !! | AGTTTTTATTCATCCTGTTT+TGG | + | chr5_4:55040833-55040852 | Msa0858010:three_prime_UTR | 25.0% |
| ! | CACAAAAGAACAAAATTAAG+AGG | - | chr5_4:55041006-55041025 | None:intergenic | 25.0% |
| ! | GTTGAGTAATTATAGGTAAT+TGG | - | chr5_4:55041068-55041087 | None:intergenic | 25.0% |
| !!! | CTTTTGAGTTGAGTAATTAT+AGG | - | chr5_4:55041075-55041094 | None:intergenic | 25.0% |
| !! | CAACTCAAAAGTAATTTTCA+AGG | + | chr5_4:55041084-55041103 | Msa0858010:three_prime_UTR | 25.0% |
| !! | TTTTAATCAGGCTTTATGTC+AGG | + | chr5_4:55038106-55038125 | Msa0858010:intron | 30.0% |
| ! | TTTAATCAGGCTTTATGTCA+GGG | + | chr5_4:55038107-55038126 | Msa0858010:intron | 30.0% |
| !!! | TAAACCCAGCTTTTAATTTG+TGG | + | chr5_4:55038387-55038406 | Msa0858010:intron | 30.0% |
| ACAACCACAAATTAAAAGCT+GGG | - | chr5_4:55038394-55038413 | None:intergenic | 30.0% | |
| TTGGTCCTTCACAATATTTA+CGG | + | chr5_4:55038443-55038462 | Msa0858010:intron | 30.0% | |
| GACTATATGATTACTGATCT+GGG | + | chr5_4:55038558-55038577 | Msa0858010:intron | 30.0% | |
| GAAATTGGCATACATTTACA+AGG | + | chr5_4:55038800-55038819 | Msa0858010:CDS | 30.0% | |
| ATACATAAATACTCTAACCC+TGG | - | chr5_4:55039044-55039063 | None:intergenic | 30.0% | |
| ! | AATATGCTTTTGTGAACTCT+TGG | + | chr5_4:55039148-55039167 | Msa0858010:intron | 30.0% |
| ! | CAATTCTAGAGAAACAGAAA+TGG | - | chr5_4:55039298-55039317 | None:intergenic | 30.0% |
| ! | TATTTTCACGGTGTATATAG+TGG | + | chr5_4:55039374-55039393 | Msa0858010:intron | 30.0% |
| TTGATCTTTGATATTTGTCG+GGG | + | chr5_4:55039547-55039566 | Msa0858010:intron | 30.0% | |
| ! | TCTTGGTAACATTTGTTTCT+AGG | + | chr5_4:55039872-55039891 | Msa0858010:intron | 30.0% |
| ! | AATTGGCTCACATTCTTATA+TGG | + | chr5_4:55039979-55039998 | Msa0858010:intron | 30.0% |
| GAGAGAAAACAGACAATATA+AGG | - | chr5_4:55040023-55040042 | None:intergenic | 30.0% | |
| TATATGCACAGATAAAATCC+TGG | - | chr5_4:55040151-55040170 | None:intergenic | 30.0% | |
| ! | TGGTGTGATTATACTTCTTT+TGG | + | chr5_4:55040328-55040347 | Msa0858010:intron | 30.0% |
| !! | TAATCTTGTTGTTTGCTTGT+TGG | + | chr5_4:55040389-55040408 | Msa0858010:intron | 30.0% |
| ATTCCTTACATTGGGATTAT+AGG | + | chr5_4:55040434-55040453 | Msa0858010:intron | 30.0% | |
| AAACCTATAATCCCAATGTA+AGG | - | chr5_4:55040440-55040459 | None:intergenic | 30.0% | |
| !! | GTGCCTGTTTTAAATTGTTT+AGG | + | chr5_4:55040481-55040500 | Msa0858010:intron | 30.0% |
| ! | GTGCCTAAACAATTTAAAAC+AGG | - | chr5_4:55040487-55040506 | None:intergenic | 30.0% |
| AGCATCTTAAGACTAATTGA+TGG | + | chr5_4:55040544-55040563 | Msa0858010:intron | 30.0% | |
| !! | CAAGCAATTTCTAGAATAAG+AGG | - | chr5_4:55040668-55040687 | None:intergenic | 30.0% |
| ! | CTTGCTTAATCTTTGCATTT+TGG | + | chr5_4:55040684-55040703 | Msa0858010:intron | 30.0% |
| !! | TTTTGGTTGTCTTTGCATTT+TGG | + | chr5_4:55040850-55040869 | Msa0858010:three_prime_UTR | 30.0% |
| ! | ACAGAAGATTTCCTTTTTCT+AGG | + | chr5_4:55040892-55040911 | Msa0858010:three_prime_UTR | 30.0% |
| GAATTCAACATCCTAGAAAA+AGG | - | chr5_4:55040906-55040925 | None:intergenic | 30.0% | |
| TGTTTAGTCCAAATCTCAAA+TGG | + | chr5_4:55040976-55040995 | Msa0858010:three_prime_UTR | 30.0% | |
| GCACCAATCAAAATGGTTAA+AGG | + | chr5_4:55037973-55037992 | Msa0858010:exon | 35.0% | |
| !! | CGTCCTTTAACCATTTTGAT+TGG | - | chr5_4:55037979-55037998 | None:intergenic | 35.0% |
| AAAATGGTTAAAGGACGTCA+AGG | + | chr5_4:55037982-55038001 | Msa0858010:exon | 35.0% | |
| GTTAAAGGATACAGATCGAA+GGG | - | chr5_4:55038033-55038052 | None:intergenic | 35.0% | |
| AGTTAAAGGATACAGATCGA+AGG | - | chr5_4:55038034-55038053 | None:intergenic | 35.0% | |
| ! | TTAATCAGGCTTTATGTCAG+GGG | + | chr5_4:55038108-55038127 | Msa0858010:intron | 35.0% |
| CACAACCACAAATTAAAAGC+TGG | - | chr5_4:55038395-55038414 | None:intergenic | 35.0% | |
| TGGTCCTTCACAATATTTAC+GGG | + | chr5_4:55038444-55038463 | Msa0858010:intron | 35.0% | |
| !! | GATAATGCTGGGATTAGTTT+GGG | - | chr5_4:55038498-55038517 | None:intergenic | 35.0% |
| !! | TGATAATGCTGGGATTAGTT+TGG | - | chr5_4:55038499-55038518 | None:intergenic | 35.0% |
| GGACTATATGATTACTGATC+TGG | + | chr5_4:55038557-55038576 | Msa0858010:intron | 35.0% | |
| GTAATGTTGTTATAGGTCCA+AGG | + | chr5_4:55038698-55038717 | Msa0858010:intron | 35.0% | |
| !! | GTTTGGGTATTGATTTACCT+TGG | - | chr5_4:55038718-55038737 | None:intergenic | 35.0% |
| TAACCTACCACCAAAATCAA+TGG | + | chr5_4:55038920-55038939 | Msa0858010:CDS | 35.0% | |
| !!! | TTACCATTGATTTTGGTGGT+AGG | - | chr5_4:55038926-55038945 | None:intergenic | 35.0% |
| !! | TCAAGTTGATTCAGTGGAAT+CGG | - | chr5_4:55039261-55039280 | None:intergenic | 35.0% |
| !! | ATGACTTCAAGTTGATTCAG+TGG | - | chr5_4:55039267-55039286 | None:intergenic | 35.0% |
| !! | TCTGTTTCTCTAGAATTGTC+TGG | + | chr5_4:55039300-55039319 | Msa0858010:intron | 35.0% |
| ACAACAAACTAAGACACCTA+TGG | - | chr5_4:55039345-55039364 | None:intergenic | 35.0% | |
| !!! | TGTGCATTGTGCTATTTTCA+CGG | + | chr5_4:55039362-55039381 | Msa0858010:intron | 35.0% |
| CAAAGATCAATTAAGTGGGT+TGG | - | chr5_4:55039537-55039556 | None:intergenic | 35.0% | |
| GAGATGTGTTCCAATAAAAC+TGG | + | chr5_4:55039684-55039703 | Msa0858010:intron | 35.0% | |
| TTGAGACGTCTTTGTATCTA+TGG | + | chr5_4:55039934-55039953 | Msa0858010:intron | 35.0% | |
| AGAATGTGAGCCAATTACAT+TGG | - | chr5_4:55039975-55039994 | None:intergenic | 35.0% | |
| CTGATTGTTTGATCTCTTTC+TGG | + | chr5_4:55040070-55040089 | Msa0858010:intron | 35.0% | |
| ! | ATACTGCACTTAGTTCTTCT+TGG | + | chr5_4:55040100-55040119 | Msa0858010:intron | 35.0% |
| ! | TGAGGCTTCTCTTTTATTCA+TGG | + | chr5_4:55040193-55040212 | Msa0858010:intron | 35.0% |
| TCTGCACATAGAAAGATAGA+TGG | + | chr5_4:55040308-55040327 | Msa0858010:intron | 35.0% | |
| GCTAACCAATTTACCAAATG+AGG | - | chr5_4:55040368-55040387 | None:intergenic | 35.0% | |
| GTGCCCTAATGATCATAAAT+TGG | - | chr5_4:55040614-55040633 | None:intergenic | 35.0% | |
| CGGACCAAAATTCAAAGATT+AGG | - | chr5_4:55040761-55040780 | None:intergenic | 35.0% | |
| AATGCAAAGACAACCAAAAC+AGG | - | chr5_4:55040849-55040868 | None:intergenic | 35.0% | |
| CATCTTCGCACCAATCAAAA+TGG | + | chr5_4:55037966-55037985 | Msa0858010:exon | 40.0% | |
| CCAAGACTCATTATCACAAG+CGG | - | chr5_4:55038539-55038558 | None:intergenic | 40.0% | |
| !! | TCTGAACAAGAGAGGTGTTT+GGG | - | chr5_4:55038734-55038753 | None:intergenic | 40.0% |
| !! | ATCTGAACAAGAGAGGTGTT+TGG | - | chr5_4:55038735-55038754 | None:intergenic | 40.0% |
| ATGGTATGCTGGGAAGAAAT+TGG | + | chr5_4:55038785-55038804 | Msa0858010:CDS | 40.0% | |
| TTACAAGGCCAAGGTGAAAA+AGG | + | chr5_4:55038815-55038834 | Msa0858010:CDS | 40.0% | |
| ACAATACCACTGTTACCATG+AGG | - | chr5_4:55038882-55038901 | None:intergenic | 40.0% | |
| !! | TGGTGTTGATTTGTTTGTGC+AGG | + | chr5_4:55039015-55039034 | Msa0858010:intron | 40.0% |
| !! | GGTGTTGATTTGTTTGTGCA+GGG | + | chr5_4:55039016-55039035 | Msa0858010:intron | 40.0% |
| !! | AATTAAGTGGGTTGGATGGA+TGG | - | chr5_4:55039529-55039548 | None:intergenic | 40.0% |
| !! | GATCAATTAAGTGGGTTGGA+TGG | - | chr5_4:55039533-55039552 | None:intergenic | 40.0% |
| ! | AAATCGCGCTTAGTTCTTCT+TGG | + | chr5_4:55039855-55039874 | Msa0858010:intron | 40.0% |
| GAGATGTGCTCCAATGTAAT+TGG | + | chr5_4:55039962-55039981 | Msa0858010:intron | 40.0% | |
| TGACGCCTCATTTGGTAAAT+TGG | + | chr5_4:55040360-55040379 | Msa0858010:intron | 40.0% | |
| ! | TAGGCACTCGACATTTTGTT+TGG | + | chr5_4:55040500-55040519 | Msa0858010:intron | 40.0% |
| TGGTAGTATCTGTCCTTTCA+TGG | + | chr5_4:55040520-55040539 | Msa0858010:intron | 40.0% | |
| GGTAGTATCTGTCCTTTCAT+GGG | + | chr5_4:55040521-55040540 | Msa0858010:intron | 40.0% | |
| TCTTAAGATGCTCCCATGAA+AGG | - | chr5_4:55040536-55040555 | None:intergenic | 40.0% | |
| ATGGTATTGCACACGTTAAC+TGG | + | chr5_4:55040563-55040582 | Msa0858010:intron | 40.0% | |
| AGATTAGGAATGCAGCTTCA+AGG | - | chr5_4:55040746-55040765 | None:intergenic | 40.0% | |
| CCAACGAAAATCTGCAAAGA+CGG | - | chr5_4:55040781-55040800 | None:intergenic | 40.0% | |
| CTGTCTCTGTAGTGTTCGTT+CGG | - | chr5_4:55037934-55037953 | None:intergenic | 45.0% | |
| AACGAACACTACAGAGACAG+AGG | + | chr5_4:55037934-55037953 | Msa0858010:five_prime_UTR | 45.0% | |
| GCACAGTTCTTGGATACAAG+AGG | + | chr5_4:55038130-55038149 | Msa0858010:CDS | 45.0% | |
| TGGGCCCGTAAATATTGTGA+AGG | - | chr5_4:55038451-55038470 | None:intergenic | 45.0% | |
| TCCCAGCATTATCACAGTAC+AGG | + | chr5_4:55038505-55038524 | Msa0858010:intron | 45.0% | |
| ! | GCCTGTACTGTGATAATGCT+GGG | - | chr5_4:55038509-55038528 | None:intergenic | 45.0% |
| ! | TGCCTGTACTGTGATAATGC+TGG | - | chr5_4:55038510-55038529 | None:intergenic | 45.0% |
| ! | CCGCTTGTGATAATGAGTCT+TGG | + | chr5_4:55038536-55038555 | Msa0858010:intron | 45.0% |
| TTGATGTTGATCTGGGTTGC+TGG | + | chr5_4:55038666-55038685 | Msa0858010:intron | 45.0% | |
| ACCTCTCTTGTTCAGATCGA+GGG | + | chr5_4:55038738-55038757 | Msa0858010:CDS | 45.0% | |
| GGCATACATTTACAAGGCCA+AGG | + | chr5_4:55038806-55038825 | Msa0858010:CDS | 45.0% | |
| AAGGCCAAGGTGAAAAAGGA+TGG | + | chr5_4:55038819-55038838 | Msa0858010:CDS | 45.0% | |
| !! | GCTACCATCCTTTTTCACCT+TGG | - | chr5_4:55038826-55038845 | None:intergenic | 45.0% |
| TAGCCACTATCGCTGCATTT+GGG | + | chr5_4:55038842-55038861 | Msa0858010:CDS | 45.0% | |
| GGTTAGACTTGAACTTTGCG+CGG | - | chr5_4:55038905-55038924 | None:intergenic | 45.0% | |
| AAACTGCCCACAGATCATCT+TGG | + | chr5_4:55039575-55039594 | Msa0858010:intron | 45.0% | |
| AACTGCCCACAGATCATCTT+GGG | + | chr5_4:55039576-55039595 | Msa0858010:intron | 45.0% | |
| TGGTTCCCAAGATGATCTGT+GGG | - | chr5_4:55039584-55039603 | None:intergenic | 45.0% | |
| TTGGTTCCCAAGATGATCTG+TGG | - | chr5_4:55039585-55039604 | None:intergenic | 45.0% | |
| AGGAGAAGGTTCAAGCAGAA+GGG | - | chr5_4:55039655-55039674 | None:intergenic | 45.0% | |
| TGAACCTTCTCCTCTATGCA+TGG | + | chr5_4:55039662-55039681 | Msa0858010:intron | 45.0% | |
| ATCTCCATGCATAGAGGAGA+AGG | - | chr5_4:55039669-55039688 | None:intergenic | 45.0% | |
| GAACACATCTCCATGCATAG+AGG | - | chr5_4:55039675-55039694 | None:intergenic | 45.0% | |
| CAAAGACGTCTCAAGCAGAA+AGG | - | chr5_4:55039928-55039947 | None:intergenic | 45.0% | |
| GTGTAAAACCTCTCTGCTTG+AGG | + | chr5_4:55040175-55040194 | Msa0858010:intron | 45.0% | |
| GAGATGTTCTCCAATGTGAC+TGG | + | chr5_4:55040215-55040234 | Msa0858010:intron | 45.0% | |
| GGAATGTAAGCCAGTCACAT+TGG | - | chr5_4:55040228-55040247 | None:intergenic | 45.0% | |
| TCTTGCTTTGACGCCTCATT+TGG | + | chr5_4:55040352-55040371 | Msa0858010:intron | 45.0% | |
| ! | CCGTCTTTGCAGATTTTCGT+TGG | + | chr5_4:55040778-55040797 | Msa0858010:intron | 45.0% |
| TCAATGACCTATCCAACTGC+TGG | - | chr5_4:55040813-55040832 | None:intergenic | 45.0% | |
| ! | GAGGAGCTCCATTTGAGATT+TGG | - | chr5_4:55040987-55041006 | None:intergenic | 45.0% |
| !! | AAATTAATAATATGATTATT+TGG | - | chr5_4:55039218-55039237 | None:intergenic | 5.0% |
| TCTCTGTAGTGTTCGTTCGG+CGG | - | chr5_4:55037931-55037950 | None:intergenic | 50.0% | |
| ! | TATGTCAGGGGCACAGTTCT+TGG | + | chr5_4:55038120-55038139 | Msa0858010:CDS | 50.0% |
| CACCTCTCTTGTTCAGATCG+AGG | + | chr5_4:55038737-55038756 | Msa0858010:CDS | 50.0% | |
| CCTCTCTTGTTCAGATCGAG+GGG | + | chr5_4:55038739-55038758 | Msa0858010:CDS | 50.0% | |
| CTCTCTTGTTCAGATCGAGG+GGG | + | chr5_4:55038740-55038759 | Msa0858010:CDS | 50.0% | |
| ATACCATGCAACCTCCTCCT+TGG | - | chr5_4:55038772-55038791 | None:intergenic | 50.0% | |
| AGGAGGTTGCATGGTATGCT+GGG | + | chr5_4:55038775-55038794 | Msa0858010:CDS | 50.0% | |
| GTAGCCACTATCGCTGCATT+TGG | + | chr5_4:55038841-55038860 | Msa0858010:CDS | 50.0% | |
| AGCCACTATCGCTGCATTTG+GGG | + | chr5_4:55038843-55038862 | Msa0858010:CDS | 50.0% | |
| TACCCCAAATGCAGCGATAG+TGG | - | chr5_4:55038848-55038867 | None:intergenic | 50.0% | |
| ! | CTATCGCTGCATTTGGGGTA+AGG | + | chr5_4:55038848-55038867 | Msa0858010:CDS | 50.0% |
| ! | GCATTTGGGGTAAGGTTACC+AGG | + | chr5_4:55038856-55038875 | Msa0858010:CDS | 50.0% |
| ATTTGTTTGTGCAGGGAGCC+AGG | + | chr5_4:55039023-55039042 | Msa0858010:intron | 50.0% | |
| TTTGTTTGTGCAGGGAGCCA+GGG | + | chr5_4:55039024-55039043 | Msa0858010:intron | 50.0% | |
| GAGGAGAAGGTTCAAGCAGA+AGG | - | chr5_4:55039656-55039675 | None:intergenic | 50.0% | |
| AAGAGAAGCCTCAAGCAGAG+AGG | - | chr5_4:55040186-55040205 | None:intergenic | 50.0% | |
| GACGTCAAGGAGAACGCATC+AGG | + | chr5_4:55037995-55038014 | Msa0858010:CDS | 55.0% | |
| CCCCTCGATCTGAACAAGAG+AGG | - | chr5_4:55038742-55038761 | None:intergenic | 55.0% | |
| GATCGAGGGGGTAAACACCA+AGG | + | chr5_4:55038752-55038771 | Msa0858010:CDS | 55.0% | |
| ACACCAAGGAGGAGGTTGCA+TGG | + | chr5_4:55038766-55038785 | Msa0858010:CDS | 55.0% | |
| GAGGAGGTTGCATGGTATGC+TGG | + | chr5_4:55038774-55038793 | Msa0858010:CDS | 55.0% | |
| GGTAAGGTTACCAGGCCTCA+TGG | + | chr5_4:55038864-55038883 | Msa0858010:CDS | 55.0% | |
| ACCAGGCCTCATGGTAACAG+TGG | + | chr5_4:55038873-55038892 | Msa0858010:CDS | 55.0% | |
| ACCACTGTTACCATGAGGCC+TGG | - | chr5_4:55038877-55038896 | None:intergenic | 55.0% | |
| TGGTACCTACAGCCAGCAGT+TGG | + | chr5_4:55040798-55040817 | Msa0858010:three_prime_UTR | 55.0% | |
| ! | CCTATCCAACTGCTGGCTGT+AGG | - | chr5_4:55040806-55040825 | None:intergenic | 55.0% |
| CCTACAGCCAGCAGTTGGAT+AGG | + | chr5_4:55040803-55040822 | Msa0858010:three_prime_UTR | 55.0% | |
| CGAGGGGGTAAACACCAAGG+AGG | + | chr5_4:55038755-55038774 | Msa0858010:CDS | 60.0% | |
| GGGGGTAAACACCAAGGAGG+AGG | + | chr5_4:55038758-55038777 | Msa0858010:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 55037919 | 55041113 | 55037919 | ID=Msa0858010;Name=Msa0858010 |
| chr5_4 | mRNA | 55037919 | 55041113 | 55037919 | ID=Msa0858010-mRNA-1;Parent=Msa0858010;Name=Msa0858010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=66|1|1|1|0.75|0.6|5|325|112 |
| chr5_4 | exon | 55037919 | 55038016 | 55037919 | ID=Msa0858010-mRNA-1:exon:16877;Parent=Msa0858010-mRNA-1 |
| chr5_4 | exon | 55038116 | 55038151 | 55038116 | ID=Msa0858010-mRNA-1:exon:16878;Parent=Msa0858010-mRNA-1 |
| chr5_4 | exon | 55038713 | 55038941 | 55038713 | ID=Msa0858010-mRNA-1:exon:16879;Parent=Msa0858010-mRNA-1 |
| chr5_4 | exon | 55039037 | 55039079 | 55039037 | ID=Msa0858010-mRNA-1:exon:16880;Parent=Msa0858010-mRNA-1 |
| chr5_4 | exon | 55040790 | 55041113 | 55040790 | ID=Msa0858010-mRNA-1:exon:16881;Parent=Msa0858010-mRNA-1 |
| chr5_4 | five_prime_UTR | 55037919 | 55037984 | 55037919 | ID=Msa0858010-mRNA-1:five_prime_utr;Parent=Msa0858010-mRNA-1 |
| chr5_4 | CDS | 55037985 | 55038016 | 55037985 | ID=Msa0858010-mRNA-1:cds;Parent=Msa0858010-mRNA-1 |
| chr5_4 | CDS | 55038116 | 55038151 | 55038116 | ID=Msa0858010-mRNA-1:cds;Parent=Msa0858010-mRNA-1 |
| chr5_4 | CDS | 55038713 | 55038941 | 55038713 | ID=Msa0858010-mRNA-1:cds;Parent=Msa0858010-mRNA-1 |
| chr5_4 | CDS | 55039037 | 55039078 | 55039037 | ID=Msa0858010-mRNA-1:cds;Parent=Msa0858010-mRNA-1 |
| chr5_4 | three_prime_UTR | 55039079 | 55039079 | 55039079 | ID=Msa0858010-mRNA-1:three_prime_utr;Parent=Msa0858010-mRNA-1 |
| chr5_4 | three_prime_UTR | 55040790 | 55041113 | 55040790 | ID=Msa0858010-mRNA-1:three_prime_utr;Parent=Msa0858010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
