Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0858990 | KEH42431.1 | 72.026 | 311 | 26 | 3 | 1 | 272 | 1 | 289 | 3.11e-153 | 439 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0858990 | A0A072VLG0 | 72.026 | 311 | 26 | 3 | 1 | 272 | 1 | 289 | 1.48e-153 | 439 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0729800 | Msa0858990 | 0.804468 | 2.129565e-49 | -8.615850e-47 |
Msa0808010 | Msa0858990 | 0.812402 | 4.316812e-51 | -8.615850e-47 |
Msa0808020 | Msa0858990 | 0.808429 | 3.111358e-50 | -8.615850e-47 |
Msa0227480 | Msa0858990 | 0.811381 | 7.203651e-51 | -8.615850e-47 |
Msa0452900 | Msa0858990 | 0.805285 | 1.437168e-49 | -8.615850e-47 |
Msa0858980 | Msa0858990 | 0.836390 | 9.625387e-57 | -8.615850e-47 |
Msa0858990 | Msa0981370 | 0.800441 | 1.439271e-48 | -8.615850e-47 |
Msa0858990 | Msa1016280 | 0.802368 | 5.799223e-49 | -8.615850e-47 |
Msa0858990 | Msa1270230 | 0.809296 | 2.029893e-50 | -8.615850e-47 |
Msa0858990 | Msa1287810 | 0.807974 | 3.887987e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0858990 | MtrunA17_Chr7g0270401 | 59.041 | 271 | 111 | 0 | 1 | 271 | 1 | 271 | 5.26e-116 | 334 |
Msa0858990 | MtrunA17_Chr1g0206471 | 50.000 | 264 | 132 | 0 | 8 | 271 | 9 | 272 | 4.54e-98 | 288 |
Msa0858990 | MtrunA17_Chr1g0193281 | 51.678 | 149 | 72 | 0 | 1 | 149 | 1 | 149 | 2.32e-51 | 166 |
Msa0858990 | MtrunA17_Chr1g0207921 | 51.852 | 108 | 50 | 1 | 12 | 117 | 9 | 116 | 5.15e-34 | 122 |
Msa0858990 | MtrunA17_Chr1g0207921 | 42.169 | 83 | 48 | 0 | 189 | 271 | 115 | 197 | 3.92e-14 | 69.3 |
Msa0858990 | MtrunA17_Chr7g0228461 | 53.509 | 114 | 44 | 3 | 53 | 157 | 1 | 114 | 5.83e-34 | 120 |
Msa0858990 | MtrunA17_Chr8g0361581 | 38.562 | 153 | 83 | 3 | 1 | 145 | 1 | 150 | 3.78e-27 | 103 |
Msa0858990 | MtrunA17_Chr8g0361581 | 42.683 | 82 | 47 | 0 | 190 | 271 | 87 | 168 | 1.82e-14 | 69.7 |
Msa0858990 | MtrunA17_Chr8g0359311 | 51.852 | 81 | 39 | 0 | 191 | 271 | 18 | 98 | 1.54e-25 | 97.1 |
Msa0858990 | MtrunA17_Chr5g0421721 | 44.565 | 92 | 51 | 0 | 1 | 92 | 1 | 92 | 4.16e-25 | 95.9 |
Msa0858990 | MtrunA17_Chr6g0473661 | 27.799 | 259 | 154 | 6 | 2 | 257 | 223 | 451 | 6.78e-24 | 100 |
Msa0858990 | MtrunA17_Chr5g0423431 | 51.899 | 79 | 38 | 0 | 1 | 79 | 1 | 79 | 1.70e-22 | 88.6 |
Msa0858990 | MtrunA17_Chr1g0178231 | 45.882 | 85 | 44 | 1 | 187 | 271 | 15 | 97 | 7.08e-19 | 80.9 |
Msa0858990 | MtrunA17_Chr7g0234161 | 36.275 | 102 | 65 | 0 | 135 | 236 | 21 | 122 | 1.05e-18 | 79.7 |
Msa0858990 | MtrunA17_Chr1g0151111 | 44.706 | 85 | 46 | 1 | 187 | 271 | 15 | 98 | 7.53e-17 | 75.9 |
Msa0858990 | MtrunA17_Chr3g0123031 | 36.449 | 107 | 50 | 1 | 165 | 271 | 1 | 89 | 1.02e-15 | 70.9 |
Msa0858990 | MtrunA17_Chr4g0004891 | 73.684 | 38 | 10 | 0 | 51 | 88 | 1 | 38 | 6.15e-14 | 65.1 |
Msa0858990 | MtrunA17_Chr7g0237161 | 40.741 | 81 | 48 | 0 | 173 | 253 | 3 | 83 | 1.59e-13 | 64.7 |
Msa0858990 | MtrunA17_Chr4g0054601 | 33.708 | 89 | 58 | 1 | 65 | 153 | 2 | 89 | 2.62e-12 | 62.4 |
Msa0858990 | MtrunA17_Chr6g0456161 | 46.939 | 49 | 26 | 0 | 210 | 258 | 1 | 49 | 4.82e-12 | 59.7 |
Msa0858990 | MtrunA17_Chr4g0014301 | 61.224 | 49 | 18 | 1 | 1 | 49 | 31 | 78 | 8.77e-12 | 60.1 |
Msa0858990 | MtrunA17_Chr4g0055111 | 52.083 | 48 | 23 | 0 | 1 | 48 | 1 | 48 | 2.98e-11 | 57.8 |
Msa0858990 | MtrunA17_Chr6g0478391 | 52.083 | 48 | 23 | 0 | 1 | 48 | 1 | 48 | 5.71e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 91 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTATCGTTGCTTCCAAATT+TGG | 0.135405 | 5_4:+56982938 | None:intergenic |
GTTAAGTTGGTGGATGATTT+TGG | 0.180110 | 5_4:-56983089 | Msa0858990:CDS |
ATTCTTGGTGCACCCAAATT+TGG | 0.206639 | 5_4:-56982951 | Msa0858990:CDS |
CACGACTTTGGAGACCAAAT+TGG | 0.230678 | 5_4:-56983624 | Msa0858990:CDS |
AGGGGTTCTCATATCATTCT+TGG | 0.282128 | 5_4:-56982966 | Msa0858990:CDS |
ATGGTGGATGCGCGAGGAAT+TGG | 0.289929 | 5_4:-56982990 | Msa0858990:CDS |
ACCGGTGATGAGGTTGATTC+TGG | 0.332695 | 5_4:-56983264 | Msa0858990:CDS |
CCTACATGTTCTCCGGAGTA+TGG | 0.333270 | 5_4:+56983743 | None:intergenic |
GTATCGTTGCTTCCAAATTT+GGG | 0.357493 | 5_4:+56982939 | None:intergenic |
TAAGAGAATTGAAAATTCAT+TGG | 0.359534 | 5_4:+56983300 | None:intergenic |
CAAGATAAGCCTTGGGTGTT+GGG | 0.367796 | 5_4:-56983490 | Msa0858990:CDS |
CGCTACGCAACTTTAGTTGA+TGG | 0.392546 | 5_4:-56983600 | Msa0858990:CDS |
CATATGTTTGGTCACGACTT+TGG | 0.405579 | 5_4:-56983636 | Msa0858990:CDS |
TTGATGCAGATTCTTGCTGC+TGG | 0.418161 | 5_4:-56983152 | Msa0858990:intron |
TGGGTGTCCATGGTCTTTGT+TGG | 0.420272 | 5_4:-56983471 | Msa0858990:CDS |
ATACGGTCTAATTCAGAAAC+GGG | 0.436860 | 5_4:+56983806 | None:intergenic |
AAGTTGCGTAGCGCCCAATT+TGG | 0.438667 | 5_4:+56983610 | None:intergenic |
CTTTCTTATCATACAATGAC+TGG | 0.442476 | 5_4:-56983925 | Msa0858990:intron |
TGGTGGATGCGCGAGGAATT+GGG | 0.443579 | 5_4:-56982989 | Msa0858990:CDS |
CAAGGCATGGACGTCATCAT+TGG | 0.445191 | 5_4:+56983948 | None:intergenic |
ACAAGATAAGCCTTGGGTGT+TGG | 0.448031 | 5_4:-56983491 | Msa0858990:CDS |
AAGATCAACTTCAGTTAAGT+TGG | 0.450584 | 5_4:-56983102 | Msa0858990:CDS |
TGGTATTGCACGTTGGTGTA+TGG | 0.450975 | 5_4:-56983059 | Msa0858990:CDS |
AAGAGAATTGAAAATTCATT+GGG | 0.453389 | 5_4:+56983301 | None:intergenic |
GCTGTCCTCCCACATATGTT+TGG | 0.456246 | 5_4:-56983648 | Msa0858990:CDS |
ACGACTTTGGAGACCAAATT+GGG | 0.460268 | 5_4:-56983623 | Msa0858990:CDS |
TCTCTACCAGCACCTCGAAC+TGG | 0.461140 | 5_4:+56983568 | None:intergenic |
CAATAACCAGTTCGAGGTGC+TGG | 0.465440 | 5_4:-56983574 | Msa0858990:CDS |
TGCGTAGATCATTGACAATA+CGG | 0.470777 | 5_4:+56983789 | None:intergenic |
GCAAATAAGACTGAAATAAA+CGG | 0.473405 | 5_4:+56982917 | None:intergenic |
ATGCAGATTCTTGCTGCTGG+AGG | 0.475285 | 5_4:-56983149 | Msa0858990:intron |
CCTTGGGTGTTGGGTGTCCA+TGG | 0.476359 | 5_4:-56983481 | Msa0858990:CDS |
GATTTCTACAAGATAAGCCT+TGG | 0.480153 | 5_4:-56983498 | Msa0858990:CDS |
AAGTACGCACACTTCAAAAT+CGG | 0.485601 | 5_4:-56983029 | Msa0858990:CDS |
ACTTCAAAATCGGTGGTGCT+TGG | 0.485770 | 5_4:-56983019 | Msa0858990:CDS |
TCTAATTCAGAAACGGGGTT+GGG | 0.490897 | 5_4:+56983812 | None:intergenic |
GGAGGAGGATGGCCATTCCT+AGG | 0.495987 | 5_4:-56983410 | Msa0858990:CDS |
TTCATTGGGTCGTGAACATA+GGG | 0.498534 | 5_4:+56983315 | None:intergenic |
TGCAGATTCTTGCTGCTGGA+GGG | 0.500156 | 5_4:-56983148 | Msa0858990:intron |
ATTCATTGGGTCGTGAACAT+AGG | 0.500836 | 5_4:+56983314 | None:intergenic |
GTCTAATTCAGAAACGGGGT+TGG | 0.504507 | 5_4:+56983811 | None:intergenic |
TCGATTTCAAACCTCATGGA+TGG | 0.509643 | 5_4:+56983381 | None:intergenic |
GTGTCCATGGTCTTTGTTGG+TGG | 0.511760 | 5_4:-56983468 | Msa0858990:CDS |
ACAGCATCAATCATGAGAAA+AGG | 0.517241 | 5_4:+56983345 | None:intergenic |
ATCAACTTCAGTTAAGTTGG+TGG | 0.517577 | 5_4:-56983099 | Msa0858990:CDS |
TTTGTCGATTTCAAACCTCA+TGG | 0.520667 | 5_4:+56983377 | None:intergenic |
AATACGGTCTAATTCAGAAA+CGG | 0.525592 | 5_4:+56983805 | None:intergenic |
TTGAGGATAGGTGGCGGAGG+AGG | 0.525929 | 5_4:-56983425 | Msa0858990:CDS |
TTGAGATAACCCTTGAGGAT+AGG | 0.527115 | 5_4:-56983437 | Msa0858990:CDS |
TATTAACCCTACATGTTCTC+CGG | 0.527644 | 5_4:+56983736 | None:intergenic |
TCCTCCGCCACCTATCCTCA+AGG | 0.531746 | 5_4:+56983427 | None:intergenic |
ATTTCTACAAGATAAGCCTT+GGG | 0.533108 | 5_4:-56983497 | Msa0858990:CDS |
GGGTCGTGAACATAGGGCCT+TGG | 0.537472 | 5_4:+56983321 | None:intergenic |
AAGTCGTGACCAAACATATG+TGG | 0.552575 | 5_4:+56983639 | None:intergenic |
GGATAGGTGGCGGAGGAGGA+TGG | 0.553623 | 5_4:-56983421 | Msa0858990:CDS |
GATGCGCGAGGAATTGGGAG+GGG | 0.554155 | 5_4:-56982984 | Msa0858990:CDS |
GTGATGAGGTTGATTCTGGC+TGG | 0.556215 | 5_4:-56983260 | Msa0858990:CDS |
TGAGGTTGATTCTGGCTGGT+TGG | 0.564690 | 5_4:-56983256 | Msa0858990:intron |
TCATGATTGATGCTGTGCCA+AGG | 0.566292 | 5_4:-56983338 | Msa0858990:CDS |
GCCAGAATCAACCTCATCAC+CGG | 0.567557 | 5_4:+56983263 | None:intergenic |
CCCTTGAGGATAGGTGGCGG+AGG | 0.572123 | 5_4:-56983428 | Msa0858990:CDS |
TCTTATGAGAAGAAATTGAC+CGG | 0.577184 | 5_4:-56983282 | Msa0858990:CDS |
ATTGCACGTTGGTGTATGGC+AGG | 0.577958 | 5_4:-56983055 | Msa0858990:CDS |
GGATGCGCGAGGAATTGGGA+GGG | 0.588217 | 5_4:-56982985 | Msa0858990:CDS |
ACATATGTTGTTCCATACTC+CGG | 0.590582 | 5_4:-56983755 | Msa0858990:CDS |
GGATCTATCTAACAAGGGGA+TGG | 0.596994 | 5_4:-56983533 | Msa0858990:CDS |
AGATAACCCTTGAGGATAGG+TGG | 0.602091 | 5_4:-56983434 | Msa0858990:CDS |
CCTCCGCCACCTATCCTCAA+GGG | 0.604268 | 5_4:+56983428 | None:intergenic |
GGATGGAGTAAACCTAGGAA+TGG | 0.605460 | 5_4:+56983398 | None:intergenic |
ACACTGGGATCTATCTAACA+AGG | 0.605472 | 5_4:-56983539 | Msa0858990:CDS |
TGGTAACAATAACCAGTTCG+AGG | 0.605863 | 5_4:-56983580 | Msa0858990:CDS |
CACTGGGATCTATCTAACAA+GGG | 0.606351 | 5_4:-56983538 | Msa0858990:CDS |
TATGATAAGAAAGCAAGGCA+TGG | 0.613938 | 5_4:+56983935 | None:intergenic |
CATTGTATGATAAGAAAGCA+AGG | 0.617353 | 5_4:+56983930 | None:intergenic |
TGGATGCGCGAGGAATTGGG+AGG | 0.623317 | 5_4:-56982986 | Msa0858990:CDS |
CCATGGACACCCAACACCCA+AGG | 0.629598 | 5_4:+56983481 | None:intergenic |
AGTCGTGACCAAACATATGT+GGG | 0.631497 | 5_4:+56983640 | None:intergenic |
AAACGAATGGTGGATGCGCG+AGG | 0.644069 | 5_4:-56982996 | Msa0858990:CDS |
TAACCCTTGAGGATAGGTGG+CGG | 0.651927 | 5_4:-56983431 | Msa0858990:CDS |
ACTGGGATCTATCTAACAAG+GGG | 0.652331 | 5_4:-56983537 | Msa0858990:CDS |
GCTTCCACCAACAAAGACCA+TGG | 0.657858 | 5_4:+56983464 | None:intergenic |
CGGTGGTGCTTGGAAACGAA+TGG | 0.658534 | 5_4:-56983009 | Msa0858990:CDS |
CTCATGGATGGAGTAAACCT+AGG | 0.663079 | 5_4:+56983393 | None:intergenic |
CTAGGTTTACTCCATCCATG+AGG | 0.667521 | 5_4:-56983392 | Msa0858990:CDS |
GAAGAAATTGACCGGTGATG+AGG | 0.675667 | 5_4:-56983274 | Msa0858990:CDS |
TACGCACACTTCAAAATCGG+TGG | 0.677033 | 5_4:-56983026 | Msa0858990:CDS |
TGGTGCTTGGAAACGAATGG+TGG | 0.678856 | 5_4:-56983006 | Msa0858990:CDS |
AAATGCTTGGTATTGCACGT+TGG | 0.696435 | 5_4:-56983066 | Msa0858990:CDS |
CAAGTTTGAGATAACCCTTG+AGG | 0.699556 | 5_4:-56983442 | Msa0858990:CDS |
CGTGACCAAACATATGTGGG+AGG | 0.708897 | 5_4:+56983643 | None:intergenic |
TACGGTCTAATTCAGAAACG+GGG | 0.761838 | 5_4:+56983807 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAGAATTGAAAATTCATT+GGG | + | chr5_4:56983568-56983587 | None:intergenic | 20.0% |
!! | TAAGAGAATTGAAAATTCAT+TGG | + | chr5_4:56983569-56983588 | None:intergenic | 20.0% |
!! | GAGTATATAAACATAATTTG+AGG | - | chr5_4:56983634-56983653 | Msa0858990:CDS | 20.0% |
!! | AAGAGAATTGAAAATTCATT+GGG | + | chr5_4:56983568-56983587 | None:intergenic | 20.0% |
!! | TAAGAGAATTGAAAATTCAT+TGG | + | chr5_4:56983569-56983588 | None:intergenic | 20.0% |
!! | GAGTATATAAACATAATTTG+AGG | - | chr5_4:56983634-56983653 | Msa0858990:CDS | 20.0% |
!! | ATTTTGTATATGTGCATTTG+AGG | - | chr5_4:56983159-56983178 | Msa0858990:intron | 25.0% |
!! | TTTTGTATATGTGCATTTGA+GGG | - | chr5_4:56983160-56983179 | Msa0858990:intron | 25.0% |
! | GCAAATAAGACTGAAATAAA+CGG | + | chr5_4:56983952-56983971 | None:intergenic | 25.0% |
!! | ATTTTGTATATGTGCATTTG+AGG | - | chr5_4:56983159-56983178 | Msa0858990:intron | 25.0% |
!! | TTTTGTATATGTGCATTTGA+GGG | - | chr5_4:56983160-56983179 | Msa0858990:intron | 25.0% |
! | GCAAATAAGACTGAAATAAA+CGG | + | chr5_4:56983952-56983971 | None:intergenic | 25.0% |
CATTGTATGATAAGAAAGCA+AGG | + | chr5_4:56982939-56982958 | None:intergenic | 30.0% | |
CTTTCTTATCATACAATGAC+TGG | - | chr5_4:56982941-56982960 | Msa0858990:CDS | 30.0% | |
AGTTGAGAAATAGAAGTGAA+TGG | + | chr5_4:56982996-56983015 | None:intergenic | 30.0% | |
! | TATATGCCTTTTTATGTTGC+AGG | - | chr5_4:56983021-56983040 | Msa0858990:CDS | 30.0% |
AAAGATCCTGCAACATAAAA+AGG | + | chr5_4:56983030-56983049 | None:intergenic | 30.0% | |
! | TTTTTATGTTGCAGGATCTT+TGG | - | chr5_4:56983029-56983048 | Msa0858990:CDS | 30.0% |
AATACGGTCTAATTCAGAAA+CGG | + | chr5_4:56983064-56983083 | None:intergenic | 30.0% | |
ATTTCTACAAGATAAGCCTT+GGG | - | chr5_4:56983369-56983388 | Msa0858990:CDS | 30.0% | |
TCTTATGAGAAGAAATTGAC+CGG | - | chr5_4:56983584-56983603 | Msa0858990:CDS | 30.0% | |
AAGATCAACTTCAGTTAAGT+TGG | - | chr5_4:56983764-56983783 | Msa0858990:CDS | 30.0% | |
CATTGTATGATAAGAAAGCA+AGG | + | chr5_4:56982939-56982958 | None:intergenic | 30.0% | |
CTTTCTTATCATACAATGAC+TGG | - | chr5_4:56982941-56982960 | Msa0858990:CDS | 30.0% | |
AGTTGAGAAATAGAAGTGAA+TGG | + | chr5_4:56982996-56983015 | None:intergenic | 30.0% | |
! | TATATGCCTTTTTATGTTGC+AGG | - | chr5_4:56983021-56983040 | Msa0858990:CDS | 30.0% |
AAAGATCCTGCAACATAAAA+AGG | + | chr5_4:56983030-56983049 | None:intergenic | 30.0% | |
! | TTTTTATGTTGCAGGATCTT+TGG | - | chr5_4:56983029-56983048 | Msa0858990:CDS | 30.0% |
AATACGGTCTAATTCAGAAA+CGG | + | chr5_4:56983064-56983083 | None:intergenic | 30.0% | |
ATTTCTACAAGATAAGCCTT+GGG | - | chr5_4:56983369-56983388 | Msa0858990:CDS | 30.0% | |
TCTTATGAGAAGAAATTGAC+CGG | - | chr5_4:56983584-56983603 | Msa0858990:CDS | 30.0% | |
AAGATCAACTTCAGTTAAGT+TGG | - | chr5_4:56983764-56983783 | Msa0858990:CDS | 30.0% | |
TATGATAAGAAAGCAAGGCA+TGG | + | chr5_4:56982934-56982953 | None:intergenic | 35.0% | |
CAATGACTGGTAATTCTGTA+AGG | - | chr5_4:56982954-56982973 | Msa0858990:CDS | 35.0% | |
ATACGGTCTAATTCAGAAAC+GGG | + | chr5_4:56983063-56983082 | None:intergenic | 35.0% | |
TGCGTAGATCATTGACAATA+CGG | + | chr5_4:56983080-56983099 | None:intergenic | 35.0% | |
ACATATGTTGTTCCATACTC+CGG | - | chr5_4:56983111-56983130 | Msa0858990:CDS | 35.0% | |
TATTAACCCTACATGTTCTC+CGG | + | chr5_4:56983133-56983152 | None:intergenic | 35.0% | |
TGATTGTTTGTTCGTGATAC+AGG | - | chr5_4:56983190-56983209 | Msa0858990:intron | 35.0% | |
GATTGTTTGTTCGTGATACA+GGG | - | chr5_4:56983191-56983210 | Msa0858990:intron | 35.0% | |
TGGTAGAGAAAAACAACACT+GGG | - | chr5_4:56983312-56983331 | Msa0858990:CDS | 35.0% | |
GATTTCTACAAGATAAGCCT+TGG | - | chr5_4:56983368-56983387 | Msa0858990:CDS | 35.0% | |
!! | TTTGTCGATTTCAAACCTCA+TGG | + | chr5_4:56983492-56983511 | None:intergenic | 35.0% |
ACAGCATCAATCATGAGAAA+AGG | + | chr5_4:56983524-56983543 | None:intergenic | 35.0% | |
!! | ATCAACTTCAGTTAAGTTGG+TGG | - | chr5_4:56983767-56983786 | Msa0858990:CDS | 35.0% |
!!! | GTTAAGTTGGTGGATGATTT+TGG | - | chr5_4:56983777-56983796 | Msa0858990:CDS | 35.0% |
!! | TGGATGATTTTGGAAATGCT+TGG | - | chr5_4:56983787-56983806 | Msa0858990:CDS | 35.0% |
AAGTACGCACACTTCAAAAT+CGG | - | chr5_4:56983837-56983856 | Msa0858990:intron | 35.0% | |
GTATCGTTGCTTCCAAATTT+GGG | + | chr5_4:56983930-56983949 | None:intergenic | 35.0% | |
TATGATAAGAAAGCAAGGCA+TGG | + | chr5_4:56982934-56982953 | None:intergenic | 35.0% | |
CAATGACTGGTAATTCTGTA+AGG | - | chr5_4:56982954-56982973 | Msa0858990:CDS | 35.0% | |
ATACGGTCTAATTCAGAAAC+GGG | + | chr5_4:56983063-56983082 | None:intergenic | 35.0% | |
TGCGTAGATCATTGACAATA+CGG | + | chr5_4:56983080-56983099 | None:intergenic | 35.0% | |
ACATATGTTGTTCCATACTC+CGG | - | chr5_4:56983111-56983130 | Msa0858990:CDS | 35.0% | |
TATTAACCCTACATGTTCTC+CGG | + | chr5_4:56983133-56983152 | None:intergenic | 35.0% | |
TGATTGTTTGTTCGTGATAC+AGG | - | chr5_4:56983190-56983209 | Msa0858990:intron | 35.0% | |
GATTGTTTGTTCGTGATACA+GGG | - | chr5_4:56983191-56983210 | Msa0858990:intron | 35.0% | |
TGGTAGAGAAAAACAACACT+GGG | - | chr5_4:56983312-56983331 | Msa0858990:CDS | 35.0% | |
GATTTCTACAAGATAAGCCT+TGG | - | chr5_4:56983368-56983387 | Msa0858990:CDS | 35.0% | |
!! | TTTGTCGATTTCAAACCTCA+TGG | + | chr5_4:56983492-56983511 | None:intergenic | 35.0% |
ACAGCATCAATCATGAGAAA+AGG | + | chr5_4:56983524-56983543 | None:intergenic | 35.0% | |
!! | ATCAACTTCAGTTAAGTTGG+TGG | - | chr5_4:56983767-56983786 | Msa0858990:CDS | 35.0% |
!!! | GTTAAGTTGGTGGATGATTT+TGG | - | chr5_4:56983777-56983796 | Msa0858990:CDS | 35.0% |
!! | TGGATGATTTTGGAAATGCT+TGG | - | chr5_4:56983787-56983806 | Msa0858990:CDS | 35.0% |
AAGTACGCACACTTCAAAAT+CGG | - | chr5_4:56983837-56983856 | Msa0858990:intron | 35.0% | |
GTATCGTTGCTTCCAAATTT+GGG | + | chr5_4:56983930-56983949 | None:intergenic | 35.0% | |
TCTAATTCAGAAACGGGGTT+GGG | + | chr5_4:56983057-56983076 | None:intergenic | 40.0% | |
TACGGTCTAATTCAGAAACG+GGG | + | chr5_4:56983062-56983081 | None:intergenic | 40.0% | |
AGTCGTGACCAAACATATGT+GGG | + | chr5_4:56983229-56983248 | None:intergenic | 40.0% | |
AAGTCGTGACCAAACATATG+TGG | + | chr5_4:56983230-56983249 | None:intergenic | 40.0% | |
CATATGTTTGGTCACGACTT+TGG | - | chr5_4:56983230-56983249 | Msa0858990:intron | 40.0% | |
! | ACGACTTTGGAGACCAAATT+GGG | - | chr5_4:56983243-56983262 | Msa0858990:intron | 40.0% |
TGGTAACAATAACCAGTTCG+AGG | - | chr5_4:56983286-56983305 | Msa0858990:CDS | 40.0% | |
CTGGTAGAGAAAAACAACAC+TGG | - | chr5_4:56983311-56983330 | Msa0858990:CDS | 40.0% | |
ACACTGGGATCTATCTAACA+AGG | - | chr5_4:56983327-56983346 | Msa0858990:CDS | 40.0% | |
CACTGGGATCTATCTAACAA+GGG | - | chr5_4:56983328-56983347 | Msa0858990:CDS | 40.0% | |
ACTGGGATCTATCTAACAAG+GGG | - | chr5_4:56983329-56983348 | Msa0858990:CDS | 40.0% | |
! | CAAGTTTGAGATAACCCTTG+AGG | - | chr5_4:56983424-56983443 | Msa0858990:CDS | 40.0% |
TTGAGATAACCCTTGAGGAT+AGG | - | chr5_4:56983429-56983448 | Msa0858990:CDS | 40.0% | |
TCGATTTCAAACCTCATGGA+TGG | + | chr5_4:56983488-56983507 | None:intergenic | 40.0% | |
TTCATTGGGTCGTGAACATA+GGG | + | chr5_4:56983554-56983573 | None:intergenic | 40.0% | |
ATTCATTGGGTCGTGAACAT+AGG | + | chr5_4:56983555-56983574 | None:intergenic | 40.0% | |
AAATGCTTGGTATTGCACGT+TGG | - | chr5_4:56983800-56983819 | Msa0858990:CDS | 40.0% | |
AGGGGTTCTCATATCATTCT+TGG | - | chr5_4:56983900-56983919 | Msa0858990:intron | 40.0% | |
! | ATTCTTGGTGCACCCAAATT+TGG | - | chr5_4:56983915-56983934 | Msa0858990:intron | 40.0% |
GGTATCGTTGCTTCCAAATT+TGG | + | chr5_4:56983931-56983950 | None:intergenic | 40.0% | |
TCTAATTCAGAAACGGGGTT+GGG | + | chr5_4:56983057-56983076 | None:intergenic | 40.0% | |
TACGGTCTAATTCAGAAACG+GGG | + | chr5_4:56983062-56983081 | None:intergenic | 40.0% | |
AGTCGTGACCAAACATATGT+GGG | + | chr5_4:56983229-56983248 | None:intergenic | 40.0% | |
AAGTCGTGACCAAACATATG+TGG | + | chr5_4:56983230-56983249 | None:intergenic | 40.0% | |
CATATGTTTGGTCACGACTT+TGG | - | chr5_4:56983230-56983249 | Msa0858990:intron | 40.0% | |
! | ACGACTTTGGAGACCAAATT+GGG | - | chr5_4:56983243-56983262 | Msa0858990:intron | 40.0% |
TGGTAACAATAACCAGTTCG+AGG | - | chr5_4:56983286-56983305 | Msa0858990:CDS | 40.0% | |
CTGGTAGAGAAAAACAACAC+TGG | - | chr5_4:56983311-56983330 | Msa0858990:CDS | 40.0% | |
ACACTGGGATCTATCTAACA+AGG | - | chr5_4:56983327-56983346 | Msa0858990:CDS | 40.0% | |
CACTGGGATCTATCTAACAA+GGG | - | chr5_4:56983328-56983347 | Msa0858990:CDS | 40.0% | |
ACTGGGATCTATCTAACAAG+GGG | - | chr5_4:56983329-56983348 | Msa0858990:CDS | 40.0% | |
! | CAAGTTTGAGATAACCCTTG+AGG | - | chr5_4:56983424-56983443 | Msa0858990:CDS | 40.0% |
TTGAGATAACCCTTGAGGAT+AGG | - | chr5_4:56983429-56983448 | Msa0858990:CDS | 40.0% | |
TCGATTTCAAACCTCATGGA+TGG | + | chr5_4:56983488-56983507 | None:intergenic | 40.0% | |
TTCATTGGGTCGTGAACATA+GGG | + | chr5_4:56983554-56983573 | None:intergenic | 40.0% | |
ATTCATTGGGTCGTGAACAT+AGG | + | chr5_4:56983555-56983574 | None:intergenic | 40.0% | |
AAATGCTTGGTATTGCACGT+TGG | - | chr5_4:56983800-56983819 | Msa0858990:CDS | 40.0% | |
AGGGGTTCTCATATCATTCT+TGG | - | chr5_4:56983900-56983919 | Msa0858990:intron | 40.0% | |
! | ATTCTTGGTGCACCCAAATT+TGG | - | chr5_4:56983915-56983934 | Msa0858990:intron | 40.0% |
GGTATCGTTGCTTCCAAATT+TGG | + | chr5_4:56983931-56983950 | None:intergenic | 40.0% | |
GTCTAATTCAGAAACGGGGT+TGG | + | chr5_4:56983058-56983077 | None:intergenic | 45.0% | |
CATACTCCGGAGAACATGTA+GGG | - | chr5_4:56983124-56983143 | Msa0858990:CDS | 45.0% | |
! | CACGACTTTGGAGACCAAAT+TGG | - | chr5_4:56983242-56983261 | Msa0858990:intron | 45.0% |
CGCTACGCAACTTTAGTTGA+TGG | - | chr5_4:56983266-56983285 | Msa0858990:CDS | 45.0% | |
GGATCTATCTAACAAGGGGA+TGG | - | chr5_4:56983333-56983352 | Msa0858990:CDS | 45.0% | |
ACAAGATAAGCCTTGGGTGT+TGG | - | chr5_4:56983375-56983394 | Msa0858990:CDS | 45.0% | |
CAAGATAAGCCTTGGGTGTT+GGG | - | chr5_4:56983376-56983395 | Msa0858990:CDS | 45.0% | |
AGATAACCCTTGAGGATAGG+TGG | - | chr5_4:56983432-56983451 | Msa0858990:CDS | 45.0% | |
GGATGGAGTAAACCTAGGAA+TGG | + | chr5_4:56983471-56983490 | None:intergenic | 45.0% | |
CTCATGGATGGAGTAAACCT+AGG | + | chr5_4:56983476-56983495 | None:intergenic | 45.0% | |
CTAGGTTTACTCCATCCATG+AGG | - | chr5_4:56983474-56983493 | Msa0858990:CDS | 45.0% | |
TCATGATTGATGCTGTGCCA+AGG | - | chr5_4:56983528-56983547 | Msa0858990:CDS | 45.0% | |
GAAGAAATTGACCGGTGATG+AGG | - | chr5_4:56983592-56983611 | Msa0858990:CDS | 45.0% | |
TTGATGCAGATTCTTGCTGC+TGG | - | chr5_4:56983714-56983733 | Msa0858990:intron | 45.0% | |
TGGTATTGCACGTTGGTGTA+TGG | - | chr5_4:56983807-56983826 | Msa0858990:CDS | 45.0% | |
TACGCACACTTCAAAATCGG+TGG | - | chr5_4:56983840-56983859 | Msa0858990:intron | 45.0% | |
ACTTCAAAATCGGTGGTGCT+TGG | - | chr5_4:56983847-56983866 | Msa0858990:intron | 45.0% | |
GTCTAATTCAGAAACGGGGT+TGG | + | chr5_4:56983058-56983077 | None:intergenic | 45.0% | |
CATACTCCGGAGAACATGTA+GGG | - | chr5_4:56983124-56983143 | Msa0858990:CDS | 45.0% | |
! | CACGACTTTGGAGACCAAAT+TGG | - | chr5_4:56983242-56983261 | Msa0858990:intron | 45.0% |
CGCTACGCAACTTTAGTTGA+TGG | - | chr5_4:56983266-56983285 | Msa0858990:CDS | 45.0% | |
GGATCTATCTAACAAGGGGA+TGG | - | chr5_4:56983333-56983352 | Msa0858990:CDS | 45.0% | |
ACAAGATAAGCCTTGGGTGT+TGG | - | chr5_4:56983375-56983394 | Msa0858990:CDS | 45.0% | |
CAAGATAAGCCTTGGGTGTT+GGG | - | chr5_4:56983376-56983395 | Msa0858990:CDS | 45.0% | |
AGATAACCCTTGAGGATAGG+TGG | - | chr5_4:56983432-56983451 | Msa0858990:CDS | 45.0% | |
GGATGGAGTAAACCTAGGAA+TGG | + | chr5_4:56983471-56983490 | None:intergenic | 45.0% | |
CTCATGGATGGAGTAAACCT+AGG | + | chr5_4:56983476-56983495 | None:intergenic | 45.0% | |
CTAGGTTTACTCCATCCATG+AGG | - | chr5_4:56983474-56983493 | Msa0858990:CDS | 45.0% | |
TCATGATTGATGCTGTGCCA+AGG | - | chr5_4:56983528-56983547 | Msa0858990:CDS | 45.0% | |
GAAGAAATTGACCGGTGATG+AGG | - | chr5_4:56983592-56983611 | Msa0858990:CDS | 45.0% | |
TTGATGCAGATTCTTGCTGC+TGG | - | chr5_4:56983714-56983733 | Msa0858990:intron | 45.0% | |
TGGTATTGCACGTTGGTGTA+TGG | - | chr5_4:56983807-56983826 | Msa0858990:CDS | 45.0% | |
TACGCACACTTCAAAATCGG+TGG | - | chr5_4:56983840-56983859 | Msa0858990:intron | 45.0% | |
ACTTCAAAATCGGTGGTGCT+TGG | - | chr5_4:56983847-56983866 | Msa0858990:intron | 45.0% | |
CAAGGCATGGACGTCATCAT+TGG | + | chr5_4:56982921-56982940 | None:intergenic | 50.0% | |
CCTACATGTTCTCCGGAGTA+TGG | + | chr5_4:56983126-56983145 | None:intergenic | 50.0% | |
CCATACTCCGGAGAACATGT+AGG | - | chr5_4:56983123-56983142 | Msa0858990:CDS | 50.0% | |
GCTGTCCTCCCACATATGTT+TGG | - | chr5_4:56983218-56983237 | Msa0858990:intron | 50.0% | |
CGTGACCAAACATATGTGGG+AGG | + | chr5_4:56983226-56983245 | None:intergenic | 50.0% | |
AAGTTGCGTAGCGCCCAATT+TGG | + | chr5_4:56983259-56983278 | None:intergenic | 50.0% | |
CAATAACCAGTTCGAGGTGC+TGG | - | chr5_4:56983292-56983311 | Msa0858990:CDS | 50.0% | |
TGGGTGTCCATGGTCTTTGT+TGG | - | chr5_4:56983395-56983414 | Msa0858990:CDS | 50.0% | |
GTGTCCATGGTCTTTGTTGG+TGG | - | chr5_4:56983398-56983417 | Msa0858990:CDS | 50.0% | |
GCTTCCACCAACAAAGACCA+TGG | + | chr5_4:56983405-56983424 | None:intergenic | 50.0% | |
TAACCCTTGAGGATAGGTGG+CGG | - | chr5_4:56983435-56983454 | Msa0858990:CDS | 50.0% | |
! | ACCGGTGATGAGGTTGATTC+TGG | - | chr5_4:56983602-56983621 | Msa0858990:CDS | 50.0% |
GCCAGAATCAACCTCATCAC+CGG | + | chr5_4:56983606-56983625 | None:intergenic | 50.0% | |
! | GTGATGAGGTTGATTCTGGC+TGG | - | chr5_4:56983606-56983625 | Msa0858990:CDS | 50.0% |
! | TGAGGTTGATTCTGGCTGGT+TGG | - | chr5_4:56983610-56983629 | Msa0858990:CDS | 50.0% |
ATGCAGATTCTTGCTGCTGG+AGG | - | chr5_4:56983717-56983736 | Msa0858990:intron | 50.0% | |
TGCAGATTCTTGCTGCTGGA+GGG | - | chr5_4:56983718-56983737 | Msa0858990:intron | 50.0% | |
ATTGCACGTTGGTGTATGGC+AGG | - | chr5_4:56983811-56983830 | Msa0858990:CDS | 50.0% | |
TGGTGCTTGGAAACGAATGG+TGG | - | chr5_4:56983860-56983879 | Msa0858990:intron | 50.0% | |
CAAGGCATGGACGTCATCAT+TGG | + | chr5_4:56982921-56982940 | None:intergenic | 50.0% | |
CCTACATGTTCTCCGGAGTA+TGG | + | chr5_4:56983126-56983145 | None:intergenic | 50.0% | |
CCATACTCCGGAGAACATGT+AGG | - | chr5_4:56983123-56983142 | Msa0858990:CDS | 50.0% | |
GCTGTCCTCCCACATATGTT+TGG | - | chr5_4:56983218-56983237 | Msa0858990:intron | 50.0% | |
CGTGACCAAACATATGTGGG+AGG | + | chr5_4:56983226-56983245 | None:intergenic | 50.0% | |
AAGTTGCGTAGCGCCCAATT+TGG | + | chr5_4:56983259-56983278 | None:intergenic | 50.0% | |
CAATAACCAGTTCGAGGTGC+TGG | - | chr5_4:56983292-56983311 | Msa0858990:CDS | 50.0% | |
TGGGTGTCCATGGTCTTTGT+TGG | - | chr5_4:56983395-56983414 | Msa0858990:CDS | 50.0% | |
GTGTCCATGGTCTTTGTTGG+TGG | - | chr5_4:56983398-56983417 | Msa0858990:CDS | 50.0% | |
GCTTCCACCAACAAAGACCA+TGG | + | chr5_4:56983405-56983424 | None:intergenic | 50.0% | |
TAACCCTTGAGGATAGGTGG+CGG | - | chr5_4:56983435-56983454 | Msa0858990:CDS | 50.0% | |
! | ACCGGTGATGAGGTTGATTC+TGG | - | chr5_4:56983602-56983621 | Msa0858990:CDS | 50.0% |
GCCAGAATCAACCTCATCAC+CGG | + | chr5_4:56983606-56983625 | None:intergenic | 50.0% | |
! | GTGATGAGGTTGATTCTGGC+TGG | - | chr5_4:56983606-56983625 | Msa0858990:CDS | 50.0% |
! | TGAGGTTGATTCTGGCTGGT+TGG | - | chr5_4:56983610-56983629 | Msa0858990:CDS | 50.0% |
ATGCAGATTCTTGCTGCTGG+AGG | - | chr5_4:56983717-56983736 | Msa0858990:intron | 50.0% | |
TGCAGATTCTTGCTGCTGGA+GGG | - | chr5_4:56983718-56983737 | Msa0858990:intron | 50.0% | |
ATTGCACGTTGGTGTATGGC+AGG | - | chr5_4:56983811-56983830 | Msa0858990:CDS | 50.0% | |
TGGTGCTTGGAAACGAATGG+TGG | - | chr5_4:56983860-56983879 | Msa0858990:intron | 50.0% | |
TCTCTACCAGCACCTCGAAC+TGG | + | chr5_4:56983301-56983320 | None:intergenic | 55.0% | |
CGGTGGTGCTTGGAAACGAA+TGG | - | chr5_4:56983857-56983876 | Msa0858990:intron | 55.0% | |
!! | AAACGAATGGTGGATGCGCG+AGG | - | chr5_4:56983870-56983889 | Msa0858990:intron | 55.0% |
!! | ATGGTGGATGCGCGAGGAAT+TGG | - | chr5_4:56983876-56983895 | Msa0858990:intron | 55.0% |
! | TGGTGGATGCGCGAGGAATT+GGG | - | chr5_4:56983877-56983896 | Msa0858990:intron | 55.0% |
TCTCTACCAGCACCTCGAAC+TGG | + | chr5_4:56983301-56983320 | None:intergenic | 55.0% | |
CGGTGGTGCTTGGAAACGAA+TGG | - | chr5_4:56983857-56983876 | Msa0858990:intron | 55.0% | |
!! | AAACGAATGGTGGATGCGCG+AGG | - | chr5_4:56983870-56983889 | Msa0858990:intron | 55.0% |
!! | ATGGTGGATGCGCGAGGAAT+TGG | - | chr5_4:56983876-56983895 | Msa0858990:intron | 55.0% |
! | TGGTGGATGCGCGAGGAATT+GGG | - | chr5_4:56983877-56983896 | Msa0858990:intron | 55.0% |
CCATGGACACCCAACACCCA+AGG | + | chr5_4:56983388-56983407 | None:intergenic | 60.0% | |
!! | CCTTGGGTGTTGGGTGTCCA+TGG | - | chr5_4:56983385-56983404 | Msa0858990:CDS | 60.0% |
CCTCCGCCACCTATCCTCAA+GGG | + | chr5_4:56983441-56983460 | None:intergenic | 60.0% | |
TCCTCCGCCACCTATCCTCA+AGG | + | chr5_4:56983442-56983461 | None:intergenic | 60.0% | |
!! | TTGAGGATAGGTGGCGGAGG+AGG | - | chr5_4:56983441-56983460 | Msa0858990:CDS | 60.0% |
GGAGGAGGATGGCCATTCCT+AGG | - | chr5_4:56983456-56983475 | Msa0858990:CDS | 60.0% | |
GGGTCGTGAACATAGGGCCT+TGG | + | chr5_4:56983548-56983567 | None:intergenic | 60.0% | |
TGGATGCGCGAGGAATTGGG+AGG | - | chr5_4:56983880-56983899 | Msa0858990:intron | 60.0% | |
GGATGCGCGAGGAATTGGGA+GGG | - | chr5_4:56983881-56983900 | Msa0858990:intron | 60.0% | |
GATGCGCGAGGAATTGGGAG+GGG | - | chr5_4:56983882-56983901 | Msa0858990:intron | 60.0% | |
CCATGGACACCCAACACCCA+AGG | + | chr5_4:56983388-56983407 | None:intergenic | 60.0% | |
!! | CCTTGGGTGTTGGGTGTCCA+TGG | - | chr5_4:56983385-56983404 | Msa0858990:CDS | 60.0% |
CCTCCGCCACCTATCCTCAA+GGG | + | chr5_4:56983441-56983460 | None:intergenic | 60.0% | |
TCCTCCGCCACCTATCCTCA+AGG | + | chr5_4:56983442-56983461 | None:intergenic | 60.0% | |
!! | TTGAGGATAGGTGGCGGAGG+AGG | - | chr5_4:56983441-56983460 | Msa0858990:CDS | 60.0% |
GGAGGAGGATGGCCATTCCT+AGG | - | chr5_4:56983456-56983475 | Msa0858990:CDS | 60.0% | |
GGGTCGTGAACATAGGGCCT+TGG | + | chr5_4:56983548-56983567 | None:intergenic | 60.0% | |
TGGATGCGCGAGGAATTGGG+AGG | - | chr5_4:56983880-56983899 | Msa0858990:intron | 60.0% | |
GGATGCGCGAGGAATTGGGA+GGG | - | chr5_4:56983881-56983900 | Msa0858990:intron | 60.0% | |
GATGCGCGAGGAATTGGGAG+GGG | - | chr5_4:56983882-56983901 | Msa0858990:intron | 60.0% | |
! | CCCTTGAGGATAGGTGGCGG+AGG | - | chr5_4:56983438-56983457 | Msa0858990:CDS | 65.0% |
!! | GGATAGGTGGCGGAGGAGGA+TGG | - | chr5_4:56983445-56983464 | Msa0858990:CDS | 65.0% |
! | CCCTTGAGGATAGGTGGCGG+AGG | - | chr5_4:56983438-56983457 | Msa0858990:CDS | 65.0% |
!! | GGATAGGTGGCGGAGGAGGA+TGG | - | chr5_4:56983445-56983464 | Msa0858990:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 56982914 | 56983974 | 56982914 | ID=Msa0858990;Name=Msa0858990 |
chr5_4 | mRNA | 56982914 | 56983974 | 56982914 | ID=Msa0858990-mRNA-1;Parent=Msa0858990;Name=Msa0858990-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|272 |
chr5_4 | exon | 56983926 | 56983974 | 56983926 | ID=Msa0858990-mRNA-1:exon:17398;Parent=Msa0858990-mRNA-1 |
chr5_4 | exon | 56983748 | 56983845 | 56983748 | ID=Msa0858990-mRNA-1:exon:17397;Parent=Msa0858990-mRNA-1 |
chr5_4 | exon | 56983257 | 56983676 | 56983257 | ID=Msa0858990-mRNA-1:exon:17396;Parent=Msa0858990-mRNA-1 |
chr5_4 | exon | 56982914 | 56983165 | 56982914 | ID=Msa0858990-mRNA-1:exon:17395;Parent=Msa0858990-mRNA-1 |
chr5_4 | CDS | 56983926 | 56983974 | 56983926 | ID=Msa0858990-mRNA-1:cds;Parent=Msa0858990-mRNA-1 |
chr5_4 | CDS | 56983748 | 56983845 | 56983748 | ID=Msa0858990-mRNA-1:cds;Parent=Msa0858990-mRNA-1 |
chr5_4 | CDS | 56983257 | 56983676 | 56983257 | ID=Msa0858990-mRNA-1:cds;Parent=Msa0858990-mRNA-1 |
chr5_4 | CDS | 56982914 | 56983165 | 56982914 | ID=Msa0858990-mRNA-1:cds;Parent=Msa0858990-mRNA-1 |
Gene Sequence |
Protein sequence |