AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0858990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858990 MtrunA17_Chr7g0270401 59.041 271 111 0 1 271 1 271 5.26e-116 334
Msa0858990 MtrunA17_Chr1g0206471 50.000 264 132 0 8 271 9 272 4.54e-98 288
Msa0858990 MtrunA17_Chr1g0193281 51.678 149 72 0 1 149 1 149 2.32e-51 166
Msa0858990 MtrunA17_Chr1g0207921 51.852 108 50 1 12 117 9 116 5.15e-34 122
Msa0858990 MtrunA17_Chr1g0207921 42.169 83 48 0 189 271 115 197 3.92e-14 69.3
Msa0858990 MtrunA17_Chr7g0228461 53.509 114 44 3 53 157 1 114 5.83e-34 120
Msa0858990 MtrunA17_Chr8g0361581 38.562 153 83 3 1 145 1 150 3.78e-27 103
Msa0858990 MtrunA17_Chr8g0361581 42.683 82 47 0 190 271 87 168 1.82e-14 69.7
Msa0858990 MtrunA17_Chr8g0359311 51.852 81 39 0 191 271 18 98 1.54e-25 97.1
Msa0858990 MtrunA17_Chr5g0421721 44.565 92 51 0 1 92 1 92 4.16e-25 95.9
Msa0858990 MtrunA17_Chr6g0473661 27.799 259 154 6 2 257 223 451 6.78e-24 100
Msa0858990 MtrunA17_Chr5g0423431 51.899 79 38 0 1 79 1 79 1.70e-22 88.6
Msa0858990 MtrunA17_Chr1g0178231 45.882 85 44 1 187 271 15 97 7.08e-19 80.9
Msa0858990 MtrunA17_Chr7g0234161 36.275 102 65 0 135 236 21 122 1.05e-18 79.7
Msa0858990 MtrunA17_Chr1g0151111 44.706 85 46 1 187 271 15 98 7.53e-17 75.9
Msa0858990 MtrunA17_Chr3g0123031 36.449 107 50 1 165 271 1 89 1.02e-15 70.9
Msa0858990 MtrunA17_Chr4g0004891 73.684 38 10 0 51 88 1 38 6.15e-14 65.1
Msa0858990 MtrunA17_Chr7g0237161 40.741 81 48 0 173 253 3 83 1.59e-13 64.7
Msa0858990 MtrunA17_Chr4g0054601 33.708 89 58 1 65 153 2 89 2.62e-12 62.4
Msa0858990 MtrunA17_Chr6g0456161 46.939 49 26 0 210 258 1 49 4.82e-12 59.7
Msa0858990 MtrunA17_Chr4g0014301 61.224 49 18 1 1 49 31 78 8.77e-12 60.1
Msa0858990 MtrunA17_Chr4g0055111 52.083 48 23 0 1 48 1 48 2.98e-11 57.8
Msa0858990 MtrunA17_Chr6g0478391 52.083 48 23 0 1 48 1 48 5.71e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 91 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATCGTTGCTTCCAAATT+TGG 0.135405 5_4:+56982938 None:intergenic
GTTAAGTTGGTGGATGATTT+TGG 0.180110 5_4:-56983089 Msa0858990:CDS
ATTCTTGGTGCACCCAAATT+TGG 0.206639 5_4:-56982951 Msa0858990:CDS
CACGACTTTGGAGACCAAAT+TGG 0.230678 5_4:-56983624 Msa0858990:CDS
AGGGGTTCTCATATCATTCT+TGG 0.282128 5_4:-56982966 Msa0858990:CDS
ATGGTGGATGCGCGAGGAAT+TGG 0.289929 5_4:-56982990 Msa0858990:CDS
ACCGGTGATGAGGTTGATTC+TGG 0.332695 5_4:-56983264 Msa0858990:CDS
CCTACATGTTCTCCGGAGTA+TGG 0.333270 5_4:+56983743 None:intergenic
GTATCGTTGCTTCCAAATTT+GGG 0.357493 5_4:+56982939 None:intergenic
TAAGAGAATTGAAAATTCAT+TGG 0.359534 5_4:+56983300 None:intergenic
CAAGATAAGCCTTGGGTGTT+GGG 0.367796 5_4:-56983490 Msa0858990:CDS
CGCTACGCAACTTTAGTTGA+TGG 0.392546 5_4:-56983600 Msa0858990:CDS
CATATGTTTGGTCACGACTT+TGG 0.405579 5_4:-56983636 Msa0858990:CDS
TTGATGCAGATTCTTGCTGC+TGG 0.418161 5_4:-56983152 Msa0858990:intron
TGGGTGTCCATGGTCTTTGT+TGG 0.420272 5_4:-56983471 Msa0858990:CDS
ATACGGTCTAATTCAGAAAC+GGG 0.436860 5_4:+56983806 None:intergenic
AAGTTGCGTAGCGCCCAATT+TGG 0.438667 5_4:+56983610 None:intergenic
CTTTCTTATCATACAATGAC+TGG 0.442476 5_4:-56983925 Msa0858990:intron
TGGTGGATGCGCGAGGAATT+GGG 0.443579 5_4:-56982989 Msa0858990:CDS
CAAGGCATGGACGTCATCAT+TGG 0.445191 5_4:+56983948 None:intergenic
ACAAGATAAGCCTTGGGTGT+TGG 0.448031 5_4:-56983491 Msa0858990:CDS
AAGATCAACTTCAGTTAAGT+TGG 0.450584 5_4:-56983102 Msa0858990:CDS
TGGTATTGCACGTTGGTGTA+TGG 0.450975 5_4:-56983059 Msa0858990:CDS
AAGAGAATTGAAAATTCATT+GGG 0.453389 5_4:+56983301 None:intergenic
GCTGTCCTCCCACATATGTT+TGG 0.456246 5_4:-56983648 Msa0858990:CDS
ACGACTTTGGAGACCAAATT+GGG 0.460268 5_4:-56983623 Msa0858990:CDS
TCTCTACCAGCACCTCGAAC+TGG 0.461140 5_4:+56983568 None:intergenic
CAATAACCAGTTCGAGGTGC+TGG 0.465440 5_4:-56983574 Msa0858990:CDS
TGCGTAGATCATTGACAATA+CGG 0.470777 5_4:+56983789 None:intergenic
GCAAATAAGACTGAAATAAA+CGG 0.473405 5_4:+56982917 None:intergenic
ATGCAGATTCTTGCTGCTGG+AGG 0.475285 5_4:-56983149 Msa0858990:intron
CCTTGGGTGTTGGGTGTCCA+TGG 0.476359 5_4:-56983481 Msa0858990:CDS
GATTTCTACAAGATAAGCCT+TGG 0.480153 5_4:-56983498 Msa0858990:CDS
AAGTACGCACACTTCAAAAT+CGG 0.485601 5_4:-56983029 Msa0858990:CDS
ACTTCAAAATCGGTGGTGCT+TGG 0.485770 5_4:-56983019 Msa0858990:CDS
TCTAATTCAGAAACGGGGTT+GGG 0.490897 5_4:+56983812 None:intergenic
GGAGGAGGATGGCCATTCCT+AGG 0.495987 5_4:-56983410 Msa0858990:CDS
TTCATTGGGTCGTGAACATA+GGG 0.498534 5_4:+56983315 None:intergenic
TGCAGATTCTTGCTGCTGGA+GGG 0.500156 5_4:-56983148 Msa0858990:intron
ATTCATTGGGTCGTGAACAT+AGG 0.500836 5_4:+56983314 None:intergenic
GTCTAATTCAGAAACGGGGT+TGG 0.504507 5_4:+56983811 None:intergenic
TCGATTTCAAACCTCATGGA+TGG 0.509643 5_4:+56983381 None:intergenic
GTGTCCATGGTCTTTGTTGG+TGG 0.511760 5_4:-56983468 Msa0858990:CDS
ACAGCATCAATCATGAGAAA+AGG 0.517241 5_4:+56983345 None:intergenic
ATCAACTTCAGTTAAGTTGG+TGG 0.517577 5_4:-56983099 Msa0858990:CDS
TTTGTCGATTTCAAACCTCA+TGG 0.520667 5_4:+56983377 None:intergenic
AATACGGTCTAATTCAGAAA+CGG 0.525592 5_4:+56983805 None:intergenic
TTGAGGATAGGTGGCGGAGG+AGG 0.525929 5_4:-56983425 Msa0858990:CDS
TTGAGATAACCCTTGAGGAT+AGG 0.527115 5_4:-56983437 Msa0858990:CDS
TATTAACCCTACATGTTCTC+CGG 0.527644 5_4:+56983736 None:intergenic
TCCTCCGCCACCTATCCTCA+AGG 0.531746 5_4:+56983427 None:intergenic
ATTTCTACAAGATAAGCCTT+GGG 0.533108 5_4:-56983497 Msa0858990:CDS
GGGTCGTGAACATAGGGCCT+TGG 0.537472 5_4:+56983321 None:intergenic
AAGTCGTGACCAAACATATG+TGG 0.552575 5_4:+56983639 None:intergenic
GGATAGGTGGCGGAGGAGGA+TGG 0.553623 5_4:-56983421 Msa0858990:CDS
GATGCGCGAGGAATTGGGAG+GGG 0.554155 5_4:-56982984 Msa0858990:CDS
GTGATGAGGTTGATTCTGGC+TGG 0.556215 5_4:-56983260 Msa0858990:CDS
TGAGGTTGATTCTGGCTGGT+TGG 0.564690 5_4:-56983256 Msa0858990:intron
TCATGATTGATGCTGTGCCA+AGG 0.566292 5_4:-56983338 Msa0858990:CDS
GCCAGAATCAACCTCATCAC+CGG 0.567557 5_4:+56983263 None:intergenic
CCCTTGAGGATAGGTGGCGG+AGG 0.572123 5_4:-56983428 Msa0858990:CDS
TCTTATGAGAAGAAATTGAC+CGG 0.577184 5_4:-56983282 Msa0858990:CDS
ATTGCACGTTGGTGTATGGC+AGG 0.577958 5_4:-56983055 Msa0858990:CDS
GGATGCGCGAGGAATTGGGA+GGG 0.588217 5_4:-56982985 Msa0858990:CDS
ACATATGTTGTTCCATACTC+CGG 0.590582 5_4:-56983755 Msa0858990:CDS
GGATCTATCTAACAAGGGGA+TGG 0.596994 5_4:-56983533 Msa0858990:CDS
AGATAACCCTTGAGGATAGG+TGG 0.602091 5_4:-56983434 Msa0858990:CDS
CCTCCGCCACCTATCCTCAA+GGG 0.604268 5_4:+56983428 None:intergenic
GGATGGAGTAAACCTAGGAA+TGG 0.605460 5_4:+56983398 None:intergenic
ACACTGGGATCTATCTAACA+AGG 0.605472 5_4:-56983539 Msa0858990:CDS
TGGTAACAATAACCAGTTCG+AGG 0.605863 5_4:-56983580 Msa0858990:CDS
CACTGGGATCTATCTAACAA+GGG 0.606351 5_4:-56983538 Msa0858990:CDS
TATGATAAGAAAGCAAGGCA+TGG 0.613938 5_4:+56983935 None:intergenic
CATTGTATGATAAGAAAGCA+AGG 0.617353 5_4:+56983930 None:intergenic
TGGATGCGCGAGGAATTGGG+AGG 0.623317 5_4:-56982986 Msa0858990:CDS
CCATGGACACCCAACACCCA+AGG 0.629598 5_4:+56983481 None:intergenic
AGTCGTGACCAAACATATGT+GGG 0.631497 5_4:+56983640 None:intergenic
AAACGAATGGTGGATGCGCG+AGG 0.644069 5_4:-56982996 Msa0858990:CDS
TAACCCTTGAGGATAGGTGG+CGG 0.651927 5_4:-56983431 Msa0858990:CDS
ACTGGGATCTATCTAACAAG+GGG 0.652331 5_4:-56983537 Msa0858990:CDS
GCTTCCACCAACAAAGACCA+TGG 0.657858 5_4:+56983464 None:intergenic
CGGTGGTGCTTGGAAACGAA+TGG 0.658534 5_4:-56983009 Msa0858990:CDS
CTCATGGATGGAGTAAACCT+AGG 0.663079 5_4:+56983393 None:intergenic
CTAGGTTTACTCCATCCATG+AGG 0.667521 5_4:-56983392 Msa0858990:CDS
GAAGAAATTGACCGGTGATG+AGG 0.675667 5_4:-56983274 Msa0858990:CDS
TACGCACACTTCAAAATCGG+TGG 0.677033 5_4:-56983026 Msa0858990:CDS
TGGTGCTTGGAAACGAATGG+TGG 0.678856 5_4:-56983006 Msa0858990:CDS
AAATGCTTGGTATTGCACGT+TGG 0.696435 5_4:-56983066 Msa0858990:CDS
CAAGTTTGAGATAACCCTTG+AGG 0.699556 5_4:-56983442 Msa0858990:CDS
CGTGACCAAACATATGTGGG+AGG 0.708897 5_4:+56983643 None:intergenic
TACGGTCTAATTCAGAAACG+GGG 0.761838 5_4:+56983807 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAGAATTGAAAATTCATT+GGG + chr5_4:56983568-56983587 None:intergenic 20.0%
!! TAAGAGAATTGAAAATTCAT+TGG + chr5_4:56983569-56983588 None:intergenic 20.0%
!! GAGTATATAAACATAATTTG+AGG - chr5_4:56983634-56983653 Msa0858990:CDS 20.0%
!! AAGAGAATTGAAAATTCATT+GGG + chr5_4:56983568-56983587 None:intergenic 20.0%
!! TAAGAGAATTGAAAATTCAT+TGG + chr5_4:56983569-56983588 None:intergenic 20.0%
!! GAGTATATAAACATAATTTG+AGG - chr5_4:56983634-56983653 Msa0858990:CDS 20.0%
!! ATTTTGTATATGTGCATTTG+AGG - chr5_4:56983159-56983178 Msa0858990:intron 25.0%
!! TTTTGTATATGTGCATTTGA+GGG - chr5_4:56983160-56983179 Msa0858990:intron 25.0%
! GCAAATAAGACTGAAATAAA+CGG + chr5_4:56983952-56983971 None:intergenic 25.0%
!! ATTTTGTATATGTGCATTTG+AGG - chr5_4:56983159-56983178 Msa0858990:intron 25.0%
!! TTTTGTATATGTGCATTTGA+GGG - chr5_4:56983160-56983179 Msa0858990:intron 25.0%
! GCAAATAAGACTGAAATAAA+CGG + chr5_4:56983952-56983971 None:intergenic 25.0%
CATTGTATGATAAGAAAGCA+AGG + chr5_4:56982939-56982958 None:intergenic 30.0%
CTTTCTTATCATACAATGAC+TGG - chr5_4:56982941-56982960 Msa0858990:CDS 30.0%
AGTTGAGAAATAGAAGTGAA+TGG + chr5_4:56982996-56983015 None:intergenic 30.0%
! TATATGCCTTTTTATGTTGC+AGG - chr5_4:56983021-56983040 Msa0858990:CDS 30.0%
AAAGATCCTGCAACATAAAA+AGG + chr5_4:56983030-56983049 None:intergenic 30.0%
! TTTTTATGTTGCAGGATCTT+TGG - chr5_4:56983029-56983048 Msa0858990:CDS 30.0%
AATACGGTCTAATTCAGAAA+CGG + chr5_4:56983064-56983083 None:intergenic 30.0%
ATTTCTACAAGATAAGCCTT+GGG - chr5_4:56983369-56983388 Msa0858990:CDS 30.0%
TCTTATGAGAAGAAATTGAC+CGG - chr5_4:56983584-56983603 Msa0858990:CDS 30.0%
AAGATCAACTTCAGTTAAGT+TGG - chr5_4:56983764-56983783 Msa0858990:CDS 30.0%
CATTGTATGATAAGAAAGCA+AGG + chr5_4:56982939-56982958 None:intergenic 30.0%
CTTTCTTATCATACAATGAC+TGG - chr5_4:56982941-56982960 Msa0858990:CDS 30.0%
AGTTGAGAAATAGAAGTGAA+TGG + chr5_4:56982996-56983015 None:intergenic 30.0%
! TATATGCCTTTTTATGTTGC+AGG - chr5_4:56983021-56983040 Msa0858990:CDS 30.0%
AAAGATCCTGCAACATAAAA+AGG + chr5_4:56983030-56983049 None:intergenic 30.0%
! TTTTTATGTTGCAGGATCTT+TGG - chr5_4:56983029-56983048 Msa0858990:CDS 30.0%
AATACGGTCTAATTCAGAAA+CGG + chr5_4:56983064-56983083 None:intergenic 30.0%
ATTTCTACAAGATAAGCCTT+GGG - chr5_4:56983369-56983388 Msa0858990:CDS 30.0%
TCTTATGAGAAGAAATTGAC+CGG - chr5_4:56983584-56983603 Msa0858990:CDS 30.0%
AAGATCAACTTCAGTTAAGT+TGG - chr5_4:56983764-56983783 Msa0858990:CDS 30.0%
TATGATAAGAAAGCAAGGCA+TGG + chr5_4:56982934-56982953 None:intergenic 35.0%
CAATGACTGGTAATTCTGTA+AGG - chr5_4:56982954-56982973 Msa0858990:CDS 35.0%
ATACGGTCTAATTCAGAAAC+GGG + chr5_4:56983063-56983082 None:intergenic 35.0%
TGCGTAGATCATTGACAATA+CGG + chr5_4:56983080-56983099 None:intergenic 35.0%
ACATATGTTGTTCCATACTC+CGG - chr5_4:56983111-56983130 Msa0858990:CDS 35.0%
TATTAACCCTACATGTTCTC+CGG + chr5_4:56983133-56983152 None:intergenic 35.0%
TGATTGTTTGTTCGTGATAC+AGG - chr5_4:56983190-56983209 Msa0858990:intron 35.0%
GATTGTTTGTTCGTGATACA+GGG - chr5_4:56983191-56983210 Msa0858990:intron 35.0%
TGGTAGAGAAAAACAACACT+GGG - chr5_4:56983312-56983331 Msa0858990:CDS 35.0%
GATTTCTACAAGATAAGCCT+TGG - chr5_4:56983368-56983387 Msa0858990:CDS 35.0%
!! TTTGTCGATTTCAAACCTCA+TGG + chr5_4:56983492-56983511 None:intergenic 35.0%
ACAGCATCAATCATGAGAAA+AGG + chr5_4:56983524-56983543 None:intergenic 35.0%
!! ATCAACTTCAGTTAAGTTGG+TGG - chr5_4:56983767-56983786 Msa0858990:CDS 35.0%
!!! GTTAAGTTGGTGGATGATTT+TGG - chr5_4:56983777-56983796 Msa0858990:CDS 35.0%
!! TGGATGATTTTGGAAATGCT+TGG - chr5_4:56983787-56983806 Msa0858990:CDS 35.0%
AAGTACGCACACTTCAAAAT+CGG - chr5_4:56983837-56983856 Msa0858990:intron 35.0%
GTATCGTTGCTTCCAAATTT+GGG + chr5_4:56983930-56983949 None:intergenic 35.0%
TATGATAAGAAAGCAAGGCA+TGG + chr5_4:56982934-56982953 None:intergenic 35.0%
CAATGACTGGTAATTCTGTA+AGG - chr5_4:56982954-56982973 Msa0858990:CDS 35.0%
ATACGGTCTAATTCAGAAAC+GGG + chr5_4:56983063-56983082 None:intergenic 35.0%
TGCGTAGATCATTGACAATA+CGG + chr5_4:56983080-56983099 None:intergenic 35.0%
ACATATGTTGTTCCATACTC+CGG - chr5_4:56983111-56983130 Msa0858990:CDS 35.0%
TATTAACCCTACATGTTCTC+CGG + chr5_4:56983133-56983152 None:intergenic 35.0%
TGATTGTTTGTTCGTGATAC+AGG - chr5_4:56983190-56983209 Msa0858990:intron 35.0%
GATTGTTTGTTCGTGATACA+GGG - chr5_4:56983191-56983210 Msa0858990:intron 35.0%
TGGTAGAGAAAAACAACACT+GGG - chr5_4:56983312-56983331 Msa0858990:CDS 35.0%
GATTTCTACAAGATAAGCCT+TGG - chr5_4:56983368-56983387 Msa0858990:CDS 35.0%
!! TTTGTCGATTTCAAACCTCA+TGG + chr5_4:56983492-56983511 None:intergenic 35.0%
ACAGCATCAATCATGAGAAA+AGG + chr5_4:56983524-56983543 None:intergenic 35.0%
!! ATCAACTTCAGTTAAGTTGG+TGG - chr5_4:56983767-56983786 Msa0858990:CDS 35.0%
!!! GTTAAGTTGGTGGATGATTT+TGG - chr5_4:56983777-56983796 Msa0858990:CDS 35.0%
!! TGGATGATTTTGGAAATGCT+TGG - chr5_4:56983787-56983806 Msa0858990:CDS 35.0%
AAGTACGCACACTTCAAAAT+CGG - chr5_4:56983837-56983856 Msa0858990:intron 35.0%
GTATCGTTGCTTCCAAATTT+GGG + chr5_4:56983930-56983949 None:intergenic 35.0%
TCTAATTCAGAAACGGGGTT+GGG + chr5_4:56983057-56983076 None:intergenic 40.0%
TACGGTCTAATTCAGAAACG+GGG + chr5_4:56983062-56983081 None:intergenic 40.0%
AGTCGTGACCAAACATATGT+GGG + chr5_4:56983229-56983248 None:intergenic 40.0%
AAGTCGTGACCAAACATATG+TGG + chr5_4:56983230-56983249 None:intergenic 40.0%
CATATGTTTGGTCACGACTT+TGG - chr5_4:56983230-56983249 Msa0858990:intron 40.0%
! ACGACTTTGGAGACCAAATT+GGG - chr5_4:56983243-56983262 Msa0858990:intron 40.0%
TGGTAACAATAACCAGTTCG+AGG - chr5_4:56983286-56983305 Msa0858990:CDS 40.0%
CTGGTAGAGAAAAACAACAC+TGG - chr5_4:56983311-56983330 Msa0858990:CDS 40.0%
ACACTGGGATCTATCTAACA+AGG - chr5_4:56983327-56983346 Msa0858990:CDS 40.0%
CACTGGGATCTATCTAACAA+GGG - chr5_4:56983328-56983347 Msa0858990:CDS 40.0%
ACTGGGATCTATCTAACAAG+GGG - chr5_4:56983329-56983348 Msa0858990:CDS 40.0%
! CAAGTTTGAGATAACCCTTG+AGG - chr5_4:56983424-56983443 Msa0858990:CDS 40.0%
TTGAGATAACCCTTGAGGAT+AGG - chr5_4:56983429-56983448 Msa0858990:CDS 40.0%
TCGATTTCAAACCTCATGGA+TGG + chr5_4:56983488-56983507 None:intergenic 40.0%
TTCATTGGGTCGTGAACATA+GGG + chr5_4:56983554-56983573 None:intergenic 40.0%
ATTCATTGGGTCGTGAACAT+AGG + chr5_4:56983555-56983574 None:intergenic 40.0%
AAATGCTTGGTATTGCACGT+TGG - chr5_4:56983800-56983819 Msa0858990:CDS 40.0%
AGGGGTTCTCATATCATTCT+TGG - chr5_4:56983900-56983919 Msa0858990:intron 40.0%
! ATTCTTGGTGCACCCAAATT+TGG - chr5_4:56983915-56983934 Msa0858990:intron 40.0%
GGTATCGTTGCTTCCAAATT+TGG + chr5_4:56983931-56983950 None:intergenic 40.0%
TCTAATTCAGAAACGGGGTT+GGG + chr5_4:56983057-56983076 None:intergenic 40.0%
TACGGTCTAATTCAGAAACG+GGG + chr5_4:56983062-56983081 None:intergenic 40.0%
AGTCGTGACCAAACATATGT+GGG + chr5_4:56983229-56983248 None:intergenic 40.0%
AAGTCGTGACCAAACATATG+TGG + chr5_4:56983230-56983249 None:intergenic 40.0%
CATATGTTTGGTCACGACTT+TGG - chr5_4:56983230-56983249 Msa0858990:intron 40.0%
! ACGACTTTGGAGACCAAATT+GGG - chr5_4:56983243-56983262 Msa0858990:intron 40.0%
TGGTAACAATAACCAGTTCG+AGG - chr5_4:56983286-56983305 Msa0858990:CDS 40.0%
CTGGTAGAGAAAAACAACAC+TGG - chr5_4:56983311-56983330 Msa0858990:CDS 40.0%
ACACTGGGATCTATCTAACA+AGG - chr5_4:56983327-56983346 Msa0858990:CDS 40.0%
CACTGGGATCTATCTAACAA+GGG - chr5_4:56983328-56983347 Msa0858990:CDS 40.0%
ACTGGGATCTATCTAACAAG+GGG - chr5_4:56983329-56983348 Msa0858990:CDS 40.0%
! CAAGTTTGAGATAACCCTTG+AGG - chr5_4:56983424-56983443 Msa0858990:CDS 40.0%
TTGAGATAACCCTTGAGGAT+AGG - chr5_4:56983429-56983448 Msa0858990:CDS 40.0%
TCGATTTCAAACCTCATGGA+TGG + chr5_4:56983488-56983507 None:intergenic 40.0%
TTCATTGGGTCGTGAACATA+GGG + chr5_4:56983554-56983573 None:intergenic 40.0%
ATTCATTGGGTCGTGAACAT+AGG + chr5_4:56983555-56983574 None:intergenic 40.0%
AAATGCTTGGTATTGCACGT+TGG - chr5_4:56983800-56983819 Msa0858990:CDS 40.0%
AGGGGTTCTCATATCATTCT+TGG - chr5_4:56983900-56983919 Msa0858990:intron 40.0%
! ATTCTTGGTGCACCCAAATT+TGG - chr5_4:56983915-56983934 Msa0858990:intron 40.0%
GGTATCGTTGCTTCCAAATT+TGG + chr5_4:56983931-56983950 None:intergenic 40.0%
GTCTAATTCAGAAACGGGGT+TGG + chr5_4:56983058-56983077 None:intergenic 45.0%
CATACTCCGGAGAACATGTA+GGG - chr5_4:56983124-56983143 Msa0858990:CDS 45.0%
! CACGACTTTGGAGACCAAAT+TGG - chr5_4:56983242-56983261 Msa0858990:intron 45.0%
CGCTACGCAACTTTAGTTGA+TGG - chr5_4:56983266-56983285 Msa0858990:CDS 45.0%
GGATCTATCTAACAAGGGGA+TGG - chr5_4:56983333-56983352 Msa0858990:CDS 45.0%
ACAAGATAAGCCTTGGGTGT+TGG - chr5_4:56983375-56983394 Msa0858990:CDS 45.0%
CAAGATAAGCCTTGGGTGTT+GGG - chr5_4:56983376-56983395 Msa0858990:CDS 45.0%
AGATAACCCTTGAGGATAGG+TGG - chr5_4:56983432-56983451 Msa0858990:CDS 45.0%
GGATGGAGTAAACCTAGGAA+TGG + chr5_4:56983471-56983490 None:intergenic 45.0%
CTCATGGATGGAGTAAACCT+AGG + chr5_4:56983476-56983495 None:intergenic 45.0%
CTAGGTTTACTCCATCCATG+AGG - chr5_4:56983474-56983493 Msa0858990:CDS 45.0%
TCATGATTGATGCTGTGCCA+AGG - chr5_4:56983528-56983547 Msa0858990:CDS 45.0%
GAAGAAATTGACCGGTGATG+AGG - chr5_4:56983592-56983611 Msa0858990:CDS 45.0%
TTGATGCAGATTCTTGCTGC+TGG - chr5_4:56983714-56983733 Msa0858990:intron 45.0%
TGGTATTGCACGTTGGTGTA+TGG - chr5_4:56983807-56983826 Msa0858990:CDS 45.0%
TACGCACACTTCAAAATCGG+TGG - chr5_4:56983840-56983859 Msa0858990:intron 45.0%
ACTTCAAAATCGGTGGTGCT+TGG - chr5_4:56983847-56983866 Msa0858990:intron 45.0%
GTCTAATTCAGAAACGGGGT+TGG + chr5_4:56983058-56983077 None:intergenic 45.0%
CATACTCCGGAGAACATGTA+GGG - chr5_4:56983124-56983143 Msa0858990:CDS 45.0%
! CACGACTTTGGAGACCAAAT+TGG - chr5_4:56983242-56983261 Msa0858990:intron 45.0%
CGCTACGCAACTTTAGTTGA+TGG - chr5_4:56983266-56983285 Msa0858990:CDS 45.0%
GGATCTATCTAACAAGGGGA+TGG - chr5_4:56983333-56983352 Msa0858990:CDS 45.0%
ACAAGATAAGCCTTGGGTGT+TGG - chr5_4:56983375-56983394 Msa0858990:CDS 45.0%
CAAGATAAGCCTTGGGTGTT+GGG - chr5_4:56983376-56983395 Msa0858990:CDS 45.0%
AGATAACCCTTGAGGATAGG+TGG - chr5_4:56983432-56983451 Msa0858990:CDS 45.0%
GGATGGAGTAAACCTAGGAA+TGG + chr5_4:56983471-56983490 None:intergenic 45.0%
CTCATGGATGGAGTAAACCT+AGG + chr5_4:56983476-56983495 None:intergenic 45.0%
CTAGGTTTACTCCATCCATG+AGG - chr5_4:56983474-56983493 Msa0858990:CDS 45.0%
TCATGATTGATGCTGTGCCA+AGG - chr5_4:56983528-56983547 Msa0858990:CDS 45.0%
GAAGAAATTGACCGGTGATG+AGG - chr5_4:56983592-56983611 Msa0858990:CDS 45.0%
TTGATGCAGATTCTTGCTGC+TGG - chr5_4:56983714-56983733 Msa0858990:intron 45.0%
TGGTATTGCACGTTGGTGTA+TGG - chr5_4:56983807-56983826 Msa0858990:CDS 45.0%
TACGCACACTTCAAAATCGG+TGG - chr5_4:56983840-56983859 Msa0858990:intron 45.0%
ACTTCAAAATCGGTGGTGCT+TGG - chr5_4:56983847-56983866 Msa0858990:intron 45.0%
CAAGGCATGGACGTCATCAT+TGG + chr5_4:56982921-56982940 None:intergenic 50.0%
CCTACATGTTCTCCGGAGTA+TGG + chr5_4:56983126-56983145 None:intergenic 50.0%
CCATACTCCGGAGAACATGT+AGG - chr5_4:56983123-56983142 Msa0858990:CDS 50.0%
GCTGTCCTCCCACATATGTT+TGG - chr5_4:56983218-56983237 Msa0858990:intron 50.0%
CGTGACCAAACATATGTGGG+AGG + chr5_4:56983226-56983245 None:intergenic 50.0%
AAGTTGCGTAGCGCCCAATT+TGG + chr5_4:56983259-56983278 None:intergenic 50.0%
CAATAACCAGTTCGAGGTGC+TGG - chr5_4:56983292-56983311 Msa0858990:CDS 50.0%
TGGGTGTCCATGGTCTTTGT+TGG - chr5_4:56983395-56983414 Msa0858990:CDS 50.0%
GTGTCCATGGTCTTTGTTGG+TGG - chr5_4:56983398-56983417 Msa0858990:CDS 50.0%
GCTTCCACCAACAAAGACCA+TGG + chr5_4:56983405-56983424 None:intergenic 50.0%
TAACCCTTGAGGATAGGTGG+CGG - chr5_4:56983435-56983454 Msa0858990:CDS 50.0%
! ACCGGTGATGAGGTTGATTC+TGG - chr5_4:56983602-56983621 Msa0858990:CDS 50.0%
GCCAGAATCAACCTCATCAC+CGG + chr5_4:56983606-56983625 None:intergenic 50.0%
! GTGATGAGGTTGATTCTGGC+TGG - chr5_4:56983606-56983625 Msa0858990:CDS 50.0%
! TGAGGTTGATTCTGGCTGGT+TGG - chr5_4:56983610-56983629 Msa0858990:CDS 50.0%
ATGCAGATTCTTGCTGCTGG+AGG - chr5_4:56983717-56983736 Msa0858990:intron 50.0%
TGCAGATTCTTGCTGCTGGA+GGG - chr5_4:56983718-56983737 Msa0858990:intron 50.0%
ATTGCACGTTGGTGTATGGC+AGG - chr5_4:56983811-56983830 Msa0858990:CDS 50.0%
TGGTGCTTGGAAACGAATGG+TGG - chr5_4:56983860-56983879 Msa0858990:intron 50.0%
CAAGGCATGGACGTCATCAT+TGG + chr5_4:56982921-56982940 None:intergenic 50.0%
CCTACATGTTCTCCGGAGTA+TGG + chr5_4:56983126-56983145 None:intergenic 50.0%
CCATACTCCGGAGAACATGT+AGG - chr5_4:56983123-56983142 Msa0858990:CDS 50.0%
GCTGTCCTCCCACATATGTT+TGG - chr5_4:56983218-56983237 Msa0858990:intron 50.0%
CGTGACCAAACATATGTGGG+AGG + chr5_4:56983226-56983245 None:intergenic 50.0%
AAGTTGCGTAGCGCCCAATT+TGG + chr5_4:56983259-56983278 None:intergenic 50.0%
CAATAACCAGTTCGAGGTGC+TGG - chr5_4:56983292-56983311 Msa0858990:CDS 50.0%
TGGGTGTCCATGGTCTTTGT+TGG - chr5_4:56983395-56983414 Msa0858990:CDS 50.0%
GTGTCCATGGTCTTTGTTGG+TGG - chr5_4:56983398-56983417 Msa0858990:CDS 50.0%
GCTTCCACCAACAAAGACCA+TGG + chr5_4:56983405-56983424 None:intergenic 50.0%
TAACCCTTGAGGATAGGTGG+CGG - chr5_4:56983435-56983454 Msa0858990:CDS 50.0%
! ACCGGTGATGAGGTTGATTC+TGG - chr5_4:56983602-56983621 Msa0858990:CDS 50.0%
GCCAGAATCAACCTCATCAC+CGG + chr5_4:56983606-56983625 None:intergenic 50.0%
! GTGATGAGGTTGATTCTGGC+TGG - chr5_4:56983606-56983625 Msa0858990:CDS 50.0%
! TGAGGTTGATTCTGGCTGGT+TGG - chr5_4:56983610-56983629 Msa0858990:CDS 50.0%
ATGCAGATTCTTGCTGCTGG+AGG - chr5_4:56983717-56983736 Msa0858990:intron 50.0%
TGCAGATTCTTGCTGCTGGA+GGG - chr5_4:56983718-56983737 Msa0858990:intron 50.0%
ATTGCACGTTGGTGTATGGC+AGG - chr5_4:56983811-56983830 Msa0858990:CDS 50.0%
TGGTGCTTGGAAACGAATGG+TGG - chr5_4:56983860-56983879 Msa0858990:intron 50.0%
TCTCTACCAGCACCTCGAAC+TGG + chr5_4:56983301-56983320 None:intergenic 55.0%
CGGTGGTGCTTGGAAACGAA+TGG - chr5_4:56983857-56983876 Msa0858990:intron 55.0%
!! AAACGAATGGTGGATGCGCG+AGG - chr5_4:56983870-56983889 Msa0858990:intron 55.0%
!! ATGGTGGATGCGCGAGGAAT+TGG - chr5_4:56983876-56983895 Msa0858990:intron 55.0%
! TGGTGGATGCGCGAGGAATT+GGG - chr5_4:56983877-56983896 Msa0858990:intron 55.0%
TCTCTACCAGCACCTCGAAC+TGG + chr5_4:56983301-56983320 None:intergenic 55.0%
CGGTGGTGCTTGGAAACGAA+TGG - chr5_4:56983857-56983876 Msa0858990:intron 55.0%
!! AAACGAATGGTGGATGCGCG+AGG - chr5_4:56983870-56983889 Msa0858990:intron 55.0%
!! ATGGTGGATGCGCGAGGAAT+TGG - chr5_4:56983876-56983895 Msa0858990:intron 55.0%
! TGGTGGATGCGCGAGGAATT+GGG - chr5_4:56983877-56983896 Msa0858990:intron 55.0%
CCATGGACACCCAACACCCA+AGG + chr5_4:56983388-56983407 None:intergenic 60.0%
!! CCTTGGGTGTTGGGTGTCCA+TGG - chr5_4:56983385-56983404 Msa0858990:CDS 60.0%
CCTCCGCCACCTATCCTCAA+GGG + chr5_4:56983441-56983460 None:intergenic 60.0%
TCCTCCGCCACCTATCCTCA+AGG + chr5_4:56983442-56983461 None:intergenic 60.0%
!! TTGAGGATAGGTGGCGGAGG+AGG - chr5_4:56983441-56983460 Msa0858990:CDS 60.0%
GGAGGAGGATGGCCATTCCT+AGG - chr5_4:56983456-56983475 Msa0858990:CDS 60.0%
GGGTCGTGAACATAGGGCCT+TGG + chr5_4:56983548-56983567 None:intergenic 60.0%
TGGATGCGCGAGGAATTGGG+AGG - chr5_4:56983880-56983899 Msa0858990:intron 60.0%
GGATGCGCGAGGAATTGGGA+GGG - chr5_4:56983881-56983900 Msa0858990:intron 60.0%
GATGCGCGAGGAATTGGGAG+GGG - chr5_4:56983882-56983901 Msa0858990:intron 60.0%
CCATGGACACCCAACACCCA+AGG + chr5_4:56983388-56983407 None:intergenic 60.0%
!! CCTTGGGTGTTGGGTGTCCA+TGG - chr5_4:56983385-56983404 Msa0858990:CDS 60.0%
CCTCCGCCACCTATCCTCAA+GGG + chr5_4:56983441-56983460 None:intergenic 60.0%
TCCTCCGCCACCTATCCTCA+AGG + chr5_4:56983442-56983461 None:intergenic 60.0%
!! TTGAGGATAGGTGGCGGAGG+AGG - chr5_4:56983441-56983460 Msa0858990:CDS 60.0%
GGAGGAGGATGGCCATTCCT+AGG - chr5_4:56983456-56983475 Msa0858990:CDS 60.0%
GGGTCGTGAACATAGGGCCT+TGG + chr5_4:56983548-56983567 None:intergenic 60.0%
TGGATGCGCGAGGAATTGGG+AGG - chr5_4:56983880-56983899 Msa0858990:intron 60.0%
GGATGCGCGAGGAATTGGGA+GGG - chr5_4:56983881-56983900 Msa0858990:intron 60.0%
GATGCGCGAGGAATTGGGAG+GGG - chr5_4:56983882-56983901 Msa0858990:intron 60.0%
! CCCTTGAGGATAGGTGGCGG+AGG - chr5_4:56983438-56983457 Msa0858990:CDS 65.0%
!! GGATAGGTGGCGGAGGAGGA+TGG - chr5_4:56983445-56983464 Msa0858990:CDS 65.0%
! CCCTTGAGGATAGGTGGCGG+AGG - chr5_4:56983438-56983457 Msa0858990:CDS 65.0%
!! GGATAGGTGGCGGAGGAGGA+TGG - chr5_4:56983445-56983464 Msa0858990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 56982914 56983974 56982914 ID=Msa0858990;Name=Msa0858990
chr5_4 mRNA 56982914 56983974 56982914 ID=Msa0858990-mRNA-1;Parent=Msa0858990;Name=Msa0858990-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|272
chr5_4 exon 56983926 56983974 56983926 ID=Msa0858990-mRNA-1:exon:17398;Parent=Msa0858990-mRNA-1
chr5_4 exon 56983748 56983845 56983748 ID=Msa0858990-mRNA-1:exon:17397;Parent=Msa0858990-mRNA-1
chr5_4 exon 56983257 56983676 56983257 ID=Msa0858990-mRNA-1:exon:17396;Parent=Msa0858990-mRNA-1
chr5_4 exon 56982914 56983165 56982914 ID=Msa0858990-mRNA-1:exon:17395;Parent=Msa0858990-mRNA-1
chr5_4 CDS 56983926 56983974 56983926 ID=Msa0858990-mRNA-1:cds;Parent=Msa0858990-mRNA-1
chr5_4 CDS 56983748 56983845 56983748 ID=Msa0858990-mRNA-1:cds;Parent=Msa0858990-mRNA-1
chr5_4 CDS 56983257 56983676 56983257 ID=Msa0858990-mRNA-1:cds;Parent=Msa0858990-mRNA-1
chr5_4 CDS 56982914 56983165 56982914 ID=Msa0858990-mRNA-1:cds;Parent=Msa0858990-mRNA-1
Gene Sequence

>Msa0858990

ATGTCCAATGATGACGTCCATGCCTTGCTTTCTTATCATACAATGACTGGATCTTTGGATCCCAACCCCGTTTCTGAATTAGACCGTATTGTCAATGATCTACGCAAGAAATATCGAACATATGTTGTTCCATACTCCGGAGAACATGGTGTTGCTGTCCTCCCACATATGTTTGGTCACGACTTTGGAGACCAAATTGGGCGCTACGCAACTTTAGTTGATGGTAACAATAACCAGTTCGAGGTGCTGGTAGAGAAAAACAACACTGGGATCTATCTAACAAGGGGATGGCTCGCTTTGCGTGATTTCTACAAGATAAGCCTTGGGTGTTGGGTGTCCATGGTCTTTGTTGGTGGAAGCAAGTTTGAGATAACCCTTGAGGATAGGTGGCGGAGGAGGATGGCCATTCCTAGGTTTACTCCATCCATGAGGTTTGAAATCGACAAAGATATGCTTCCTTTTCTCATGATTGATGCTGTGCCAAGGCCCTATGTTCACGACCCAATGAATTTTCAATTCTCTTATGAGAAGAAATTGACCGGTGATGAGGTTGATTCTGGCTGGTTGATTCTTGCTGCTGGAGGGTTTTGTCGTCTAACTTTGAACAAAAGATCAACTTCAGTTAAGTTGGTGGATGATTTTGGAAATGCTTGGTATTGCACGTTGGTGTATGGCAGGCGTAAGTACGCACACTTCAAAATCGGTGGTGCTTGGAAACGAATGGTGGATGCGCGAGGAATTGGGAGGGGTTCTCATATCATTCTTGGTGCACCCAAATTTGGAAGCAACGATACCGTTTATTTCAGTCTTATTTGCTAA

Protein sequence

>Msa0858990

MSNDDVHALLSYHTMTGSLDPNPVSELDRIVNDLRKKYRTYVVPYSGEHGVAVLPHMFGHDFGDQIGRYATLVDGNNNQFEVLVEKNNTGIYLTRGWLALRDFYKISLGCWVSMVFVGGSKFEITLEDRWRRRMAIPRFTPSMRFEIDKDMLPFLMIDAVPRPYVHDPMNFQFSYEKKLTGDEVDSGWLILAAGGFCRLTLNKRSTSVKLVDDFGNAWYCTLVYGRRKYAHFKIGGAWKRMVDARGIGRGSHIILGAPKFGSNDTVYFSLIC*