AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0858980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858980 MtrunA17_Chr4g0014311 67.483 286 73 3 258 525 2 285 2.05e-131 383
Msa0858980 MtrunA17_Chr1g0206481 60.702 285 112 0 1 285 1 285 6.35e-131 382
Msa0858980 MtrunA17_Chr3g0096071 56.731 208 85 2 132 339 21 223 5.01e-85 262
Msa0858980 MtrunA17_Chr5g0411141 42.807 285 163 0 1 285 2 286 1.88e-79 251
Msa0858980 MtrunA17_Chr2g0278111 42.807 285 163 0 1 285 1 285 2.05e-79 251
Msa0858980 MtrunA17_Chr8g0365271 61.257 191 66 2 339 524 5 192 6.25e-71 224
Msa0858980 MtrunA17_Chr5g0423441 42.975 242 138 0 1 242 1 242 9.45e-68 219
Msa0858980 MtrunA17_Chr5g0444831 60.109 183 65 2 347 524 1 180 7.68e-64 206
Msa0858980 MtrunA17_Chr2g0280031 41.410 227 124 1 22 239 3 229 2.12e-58 194
Msa0858980 MtrunA17_Chr5g0421841 36.667 210 132 1 1 210 1 209 2.81e-45 158
Msa0858980 MtrunA17_Chr1g0158831 47.260 146 77 0 140 285 3 148 3.52e-40 143
Msa0858980 MtrunA17_Chr7g0270411 61.364 132 43 4 398 524 1 129 1.30e-36 132
Msa0858980 MtrunA17_Chr3g0138341 66.667 87 24 1 339 425 20 101 1.40e-34 127
Msa0858980 MtrunA17_Chr3g0112231 42.208 154 78 3 191 344 5 147 1.05e-33 127
Msa0858980 MtrunA17_Chr1g0167871 24.750 400 269 11 19 403 224 606 3.09e-28 119
Msa0858980 MtrunA17_Chr5g0421741 37.037 135 85 0 1 135 1 135 2.63e-27 108
Msa0858980 MtrunA17_Chr1g0148711 37.037 135 85 0 1 135 1 135 2.63e-27 108
Msa0858980 MtrunA17_Chr1g0212881 42.857 98 52 1 347 444 1 94 1.70e-23 95.5
Msa0858980 MtrunA17_Chr2g0304851 25.459 381 235 14 8 373 12 358 5.93e-23 100
Msa0858980 MtrunA17_Chr4g0044661 26.693 251 166 8 20 260 26 268 1.34e-16 82.4
Msa0858980 MtrunA17_Chr2g0300061 48.387 62 32 0 378 439 7 68 1.44e-16 75.1
Msa0858980 MtrunA17_Chr1g0148611 31.973 147 94 4 67 209 17 161 1.38e-14 71.6
Msa0858980 MtrunA17_Chr2g0279021 22.093 344 230 12 159 472 3 338 1.71e-14 75.5
Msa0858980 MtrunA17_Chr8g0363071 31.429 140 92 3 67 204 18 155 7.30e-14 69.3
Msa0858980 MtrunA17_Chr1g0168201 34.906 106 68 1 344 448 23 128 1.90e-12 65.5
Msa0858980 MtrunA17_Chr4g0019691 27.703 148 102 4 290 436 22 165 5.25e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858980 AT2G05642.1 24.017 458 274 9 5 431 5 419 3.05e-38 147
Msa0858980 AT1G52950.1 26.683 401 277 9 20 409 22 416 3.44e-32 130

Find 122 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCACAACCTTCTCTTTA+AGG 0.048956 5_4:+56980797 None:intergenic
GCAGTCAATCTTTGTAAATT+TGG 0.146508 5_4:+56981018 None:intergenic
TGTGGGATCAATATGCTTTA+AGG 0.205308 5_4:-56980105 Msa0858980:CDS
ACACCTAGGCACAGCATTTC+TGG 0.281512 5_4:+56979419 None:intergenic
GATGGATACCCGTCTGATTT+AGG 0.289989 5_4:-56979079 Msa0858980:CDS
TGGAAAGAGATCTGCTGATT+TGG 0.291847 5_4:-56978585 Msa0858980:CDS
CCTGTCTCTGCAATCGTTGC+TGG 0.303425 5_4:-56981401 Msa0858980:CDS
ACCTTGCTACACGGAGTAAT+CGG 0.310589 5_4:+56978611 None:intergenic
TTATGAGATCGAAAATTTAC+TGG 0.319596 5_4:-56981107 Msa0858980:CDS
CTTAATCCTTCCAGCACATT+TGG 0.326173 5_4:+56979488 None:intergenic
TCTACTAATGACCTAATCTT+AGG 0.343156 5_4:+56981142 None:intergenic
GAGCCTAAGTTTCGCTATAC+TGG 0.359555 5_4:-56981073 Msa0858980:CDS
CAAGGTGTGAGTCAATCTTC+TGG 0.370814 5_4:-56979801 Msa0858980:CDS
ATCTTTGTTGACATCAGTCT+TGG 0.386824 5_4:+56978640 None:intergenic
GGGATCACGCGTCGTCAAAT+AGG 0.391818 5_4:+56980075 None:intergenic
TGAATGGCAGTGATTTCGTT+AGG 0.397115 5_4:+56981314 None:intergenic
CTTCACAGCTGGAGAAATTA+CGG 0.410476 5_4:-56979001 Msa0858980:CDS
GTACGATATTCTTTGACAAC+AGG 0.410623 5_4:+56979941 None:intergenic
TTCACACATTTCAGCTTGGC+AGG 0.413396 5_4:+56978509 None:intergenic
ATTAGGTCATTAGTAGAGGA+AGG 0.416825 5_4:-56981136 Msa0858980:CDS
AGCGAAACTTAGGCTCACTA+TGG 0.421346 5_4:+56981080 None:intergenic
AGGCTTTGGTACCTAAGATT+AGG 0.422023 5_4:-56981153 Msa0858980:CDS
CAAGGTGCATGTACAAGTTA+TGG 0.424529 5_4:-56979301 Msa0858980:CDS
GGAAGGATTAAGATCATTGC+TGG 0.424745 5_4:-56979477 Msa0858980:CDS
TAGGTCATTAGTAGAGGAAG+GGG 0.429543 5_4:-56981134 Msa0858980:CDS
GTACAAGTTATGGACAATAC+TGG 0.429578 5_4:-56979291 Msa0858980:CDS
CAATCTTTGTAAATTTGGTT+AGG 0.434328 5_4:+56981023 None:intergenic
TAGGCACAGCATTTCTGGTC+TGG 0.437450 5_4:+56979424 None:intergenic
TTTAAGGTTGAAATTACAAA+TGG 0.440296 5_4:-56979031 Msa0858980:CDS
ACCAGTATATCTGTCCTCTT+TGG 0.442298 5_4:+56980937 None:intergenic
ATACGTCGGATGATTCAATA+AGG 0.445508 5_4:+56979718 None:intergenic
ACCAAAGAGGACAGATATAC+TGG 0.454498 5_4:-56980938 Msa0858980:intron
TCCTGGTTTGAACAGATTCA+AGG 0.458737 5_4:-56979319 Msa0858980:intron
AGGTTCAATATCACGACAAC+AGG 0.459346 5_4:+56980046 None:intergenic
TCTGATTTAGGTGTTCTGAT+TGG 0.462512 5_4:-56979067 Msa0858980:CDS
TTGTTCTTGCCTCTATCTGT+GGG 0.466251 5_4:-56979548 Msa0858980:CDS
TTTATGAATGCAGATGTCAT+AGG 0.467964 5_4:-56980841 Msa0858980:intron
CGATTGCAGAGACAGGAGTT+AGG 0.468013 5_4:+56981408 None:intergenic
GGCCTCTGGGAAGAAGGCTT+TGG 0.470210 5_4:-56981167 Msa0858980:CDS
TAGAGTACATTGTTCATTGT+GGG 0.470491 5_4:-56980122 Msa0858980:CDS
TATCACGACAACAGGAGAGC+TGG 0.471452 5_4:+56980054 None:intergenic
AGATCGAAAAGGATGATTGA+TGG 0.473069 5_4:-56978487 None:intergenic
TGGCTCAATCCCACAGATAG+AGG 0.476086 5_4:+56979539 None:intergenic
TTCGCAGATGGGAAAGATAC+AGG 0.476902 5_4:-56981188 Msa0858980:intron
ATGGGAAAGATACAGGCCTC+TGG 0.481318 5_4:-56981181 Msa0858980:CDS
ATTGTTCTTGCCTCTATCTG+TGG 0.482079 5_4:-56979549 Msa0858980:CDS
CCAGCAACGATTGCAGAGAC+AGG 0.490864 5_4:+56981401 None:intergenic
AGAAGATTGACTCACACCTT+GGG 0.491372 5_4:+56979803 None:intergenic
ACTCCGTGTAGCAAGGTGTC+TGG 0.492172 5_4:-56978605 Msa0858980:CDS
TGCAGAGACAGGAGTTAGGA+TGG 0.492399 5_4:+56981412 None:intergenic
TTAGGTCATTAGTAGAGGAA+GGG 0.498377 5_4:-56981135 Msa0858980:CDS
TTGGATGATTGTGATATTGT+CGG 0.498738 5_4:-56978566 Msa0858980:CDS
GTGTGCGTGTCATCAACCTT+TGG 0.499890 5_4:-56981358 Msa0858980:CDS
TCGCAATGTTTCAAACTATG+TGG 0.503998 5_4:-56979244 Msa0858980:CDS
CTGTCTCTGCAATCGTTGCT+GGG 0.508739 5_4:-56981400 Msa0858980:CDS
CAGAAGATTGACTCACACCT+TGG 0.509657 5_4:+56979802 None:intergenic
ATGGCAACTTGCTTCACAGC+TGG 0.511146 5_4:-56979012 Msa0858980:CDS
GATACAGGCCTCTGGGAAGA+AGG 0.511456 5_4:-56981173 Msa0858980:CDS
GCCACATCAGTTTGTGTCAA+AGG 0.511908 5_4:+56978797 None:intergenic
GAATGGCAGTGATTTCGTTA+GGG 0.515576 5_4:+56981315 None:intergenic
GTCAAGAAGCATCAAATGAA+TGG 0.519079 5_4:+56981298 None:intergenic
TCATAGTACCATCCGTACTC+TGG 0.519345 5_4:+56979519 None:intergenic
AACTGATGTGGCGCCGTTGG+AGG 0.523440 5_4:-56978786 Msa0858980:intron
GATGCCTGCACCAAATGTGC+TGG 0.525374 5_4:-56979498 Msa0858980:CDS
CCTTGCTACACGGAGTAATC+GGG 0.528739 5_4:+56978612 None:intergenic
CTTAAAGAGAAGGTTGTGAA+TGG 0.530757 5_4:-56980796 Msa0858980:CDS
CCTTCCAGCACATTTGGTGC+AGG 0.532458 5_4:+56979494 None:intergenic
ACAAACTGATGTGGCGCCGT+TGG 0.537558 5_4:-56978789 Msa0858980:CDS
GAATCAAGCACCTCTCTGAA+AGG 0.538625 5_4:+56980962 None:intergenic
CAAAGTCATTGACCTTACCT+TGG 0.541837 5_4:-56980764 Msa0858980:CDS
TTATTTGGTTCAGAATGTAC+AGG 0.542109 5_4:-56978690 Msa0858980:intron
TGTCCAGTATAGCGAAACTT+AGG 0.543021 5_4:+56981070 None:intergenic
AATCAAGCACCTCTCTGAAA+GGG 0.543284 5_4:+56980963 None:intergenic
CGCAATGTTTCAAACTATGT+GGG 0.544437 5_4:-56979243 Msa0858980:CDS
TCTGATTGATGCTCAAGGGC+AGG 0.547127 5_4:-56979205 Msa0858980:intron
ATCACGACAACAGGAGAGCT+GGG 0.547563 5_4:+56980055 None:intergenic
TTTGATAAGATCAGCGTCAT+CGG 0.548924 5_4:+56978964 None:intergenic
CACTTACTCACTGTCTTCCA+AGG 0.553305 5_4:+56980747 None:intergenic
AACTAAGATGCTACCTCCAA+CGG 0.553721 5_4:+56978773 None:intergenic
CTGCATCATATCATCTGCAA+GGG 0.558463 5_4:+56979764 None:intergenic
ATGTAGGGTGGCAGTTCCGA+TGG 0.559452 5_4:-56979097 Msa0858980:intron
AAGAGATGTCCTTAAAGAGA+AGG 0.560400 5_4:-56980806 Msa0858980:CDS
TGTGGGATTGAGCCAGAGTA+CGG 0.560659 5_4:-56979531 Msa0858980:CDS
AGTTTCGCTATACTGGACAT+AGG 0.566846 5_4:-56981066 Msa0858980:CDS
TGGGAAAGATACAGGCCTCT+GGG 0.567444 5_4:-56981180 Msa0858980:CDS
CAAGATCTGATTGATGCTCA+AGG 0.571599 5_4:-56979210 Msa0858980:CDS
TAAGATTAGGTCATTAGTAG+AGG 0.575794 5_4:-56981140 Msa0858980:CDS
ATAGAGTACATTGTTCATTG+TGG 0.579525 5_4:-56980123 Msa0858980:CDS
CCCGATTACTCCGTGTAGCA+AGG 0.584861 5_4:-56978612 Msa0858980:CDS
TCTGCATCATATCATCTGCA+AGG 0.586898 5_4:+56979763 None:intergenic
GCGAAACTTAGGCTCACTAT+GGG 0.587671 5_4:+56981081 None:intergenic
GCAAGAACAATTACGTTACA+TGG 0.589574 5_4:+56979561 None:intergenic
AGGTCATTAGTAGAGGAAGG+GGG 0.589927 5_4:-56981133 Msa0858980:CDS
ATCAGAACACCTAAATCAGA+CGG 0.591320 5_4:+56979070 None:intergenic
AGACCAGAAATGCTGTGCCT+AGG 0.592686 5_4:-56979422 Msa0858980:intron
ACTCACTGTCTTCCAAGGTA+AGG 0.595174 5_4:+56980752 None:intergenic
GATCTTCACACATTTCAGCT+TGG 0.600610 5_4:+56978505 None:intergenic
TTTCCAGACACCTTGCTACA+CGG 0.601622 5_4:+56978602 None:intergenic
CAGGTACAATTGCTTGAGGA+AGG 0.604139 5_4:-56978671 Msa0858980:CDS
GGATTAAGATCATTGCTGGA+AGG 0.608494 5_4:-56979473 Msa0858980:CDS
CATTAAGCGTCATGACCTGA+AGG 0.612415 5_4:-56978936 Msa0858980:intron
TTTGATGCTTCTTGACGACA+AGG 0.614719 5_4:-56981291 Msa0858980:intron
TGAATTCAGAAACAGTCCAA+AGG 0.615639 5_4:+56981342 None:intergenic
GGATCAATATGCTTTAAGGA+TGG 0.617864 5_4:-56980101 Msa0858980:CDS
TAAATCAGACGGGTATCCAT+CGG 0.618979 5_4:+56979081 None:intergenic
GCTCTAATGATGATGGTGAA+AGG 0.620732 5_4:-56978544 Msa0858980:CDS
GTCTGGTTGCACCTTGACGA+AGG 0.621468 5_4:+56979441 None:intergenic
GGACATCTCTTTCAACCACA+TGG 0.625592 5_4:+56980818 None:intergenic
TCAGAACACCTAAATCAGAC+GGG 0.626393 5_4:+56979071 None:intergenic
AAGATCTGATTGATGCTCAA+GGG 0.627842 5_4:-56979209 Msa0858980:CDS
GGATTGAGCCAGAGTACGGA+TGG 0.635845 5_4:-56979527 Msa0858980:CDS
GCAGAAATTTCAGTCACCCA+AGG 0.642758 5_4:-56979819 Msa0858980:CDS
ATTGTCGGCTCTAATGATGA+TGG 0.644857 5_4:-56978551 Msa0858980:CDS
TGTACAGGTACAATTGCTTG+AGG 0.649475 5_4:-56978675 Msa0858980:CDS
TCCTTTGACACAAACTGATG+TGG 0.655852 5_4:-56978798 Msa0858980:CDS
GGTGCTTGATTCGACCAAAG+AGG 0.656836 5_4:-56980951 Msa0858980:CDS
CCTGCACCAAATGTGCTGGA+AGG 0.670265 5_4:-56979494 Msa0858980:CDS
TGCATCATATCATCTGCAAG+GGG 0.681617 5_4:+56979765 None:intergenic
GAAATGTGTGAAGATCGAAA+AGG 0.682154 5_4:-56978498 Msa0858980:CDS
TGATTTCATCCCTTTCAGAG+AGG 0.689269 5_4:-56980972 Msa0858980:CDS
TACCAAAGCCTTCTTCCCAG+AGG 0.696777 5_4:+56981165 None:intergenic
TGCAGATGTCATAGGCCATG+TGG 0.736755 5_4:-56980833 Msa0858980:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACATATAATAAGTTTT+GGG - chr5_4:56979377-56979396 Msa0858980:intron 10.0%
!!! GTTTTACATATAATAAGTTT+TGG - chr5_4:56979376-56979395 Msa0858980:intron 15.0%
!!! TTTACATATAATAAGTTTTG+GGG - chr5_4:56979378-56979397 Msa0858980:intron 15.0%
!! TAGAATAAATTAACAATATG+AGG + chr5_4:56979421-56979440 None:intergenic 15.0%
!!! AAAATCTGATATACATATTT+TGG + chr5_4:56979613-56979632 None:intergenic 15.0%
!!! TTTTGTTCCAAAAAATATAT+TGG - chr5_4:56979629-56979648 Msa0858980:intron 15.0%
!! TTTGTTCCAAAAAATATATT+GGG - chr5_4:56979630-56979649 Msa0858980:intron 15.0%
!! AAATTGCATATTAAATGAAT+TGG + chr5_4:56979662-56979681 None:intergenic 15.0%
!!! AATTTTTTTTTCAATAACAG+TGG - chr5_4:56979677-56979696 Msa0858980:intron 15.0%
!! ATGGACATTATATAAATAAA+AGG - chr5_4:56979996-56980015 Msa0858980:CDS 15.0%
!!! TTTTGTTTAGAAACTATTAT+TGG - chr5_4:56980021-56980040 Msa0858980:CDS 15.0%
!! TATGAACAAAAAAGAAAATA+AGG + chr5_4:56980247-56980266 None:intergenic 15.0%
!!! ATTTTCTTTTTTGTTCATAA+TGG - chr5_4:56980248-56980267 Msa0858980:intron 15.0%
!! AATTAAATAAAAGAACAGCA+TGG + chr5_4:56979253-56979272 None:intergenic 20.0%
!! AAAACAATAAGAACAAACAA+TGG + chr5_4:56979290-56979309 None:intergenic 20.0%
!!! TTCTTTGATTAATTGACTTT+TGG - chr5_4:56979500-56979519 Msa0858980:CDS 20.0%
!!! AAACAACCCAATATATTTTT+TGG + chr5_4:56979639-56979658 None:intergenic 20.0%
!!! GATCTTTACCTTAATTTTAA+TGG - chr5_4:56979736-56979755 Msa0858980:CDS 20.0%
!!! TTTACCTTAATTTTAATGGT+TGG - chr5_4:56979740-56979759 Msa0858980:CDS 20.0%
!! ATAACCAACCATTAAAATTA+AGG + chr5_4:56979747-56979766 None:intergenic 20.0%
!!! AGTATTTTTTTAGTTTGCAA+AGG + chr5_4:56979886-56979905 None:intergenic 20.0%
!! TGCAAACTAAAAAAATACTA+TGG - chr5_4:56979887-56979906 Msa0858980:intron 20.0%
!!! GATATTATTGTTTTAATCGT+AGG - chr5_4:56980058-56980077 Msa0858980:CDS 20.0%
!! AAAAAAAAATCATCATACGT+CGG + chr5_4:56980208-56980227 None:intergenic 20.0%
!!! ACGTATGATGATTTTTTTTT+TGG - chr5_4:56980208-56980227 Msa0858980:intron 20.0%
!!! ATTTTTTTTTTGGTCATCAT+TGG - chr5_4:56980218-56980237 Msa0858980:intron 20.0%
!! AACTTGACTATGATAAAAAT+TGG + chr5_4:56980555-56980574 None:intergenic 20.0%
!!! TGGAAAAAAAATGCTTTTTA+AGG - chr5_4:56980862-56980881 Msa0858980:intron 20.0%
!!! TTTAAGGTTGAAATTACAAA+TGG - chr5_4:56980878-56980897 Msa0858980:intron 20.0%
!!! CGCATAAGAATTATTTTATT+TGG - chr5_4:56981204-56981223 Msa0858980:intron 20.0%
! CTTATTTCCTTCTAAGTATA+AGG - chr5_4:56978656-56978675 Msa0858980:CDS 25.0%
! TATCAATCCTTATACTTAGA+AGG + chr5_4:56978666-56978685 None:intergenic 25.0%
! CTATATTATAATTCGCAGAT+GGG - chr5_4:56978710-56978729 Msa0858980:intron 25.0%
! TTATGAGATCGAAAATTTAC+TGG - chr5_4:56978802-56978821 Msa0858980:CDS 25.0%
! CAATCTTTGTAAATTTGGTT+AGG + chr5_4:56978889-56978908 None:intergenic 25.0%
! ATATGATGTATCTAATTGCT+TGG - chr5_4:56979333-56979352 Msa0858980:intron 25.0%
!! AATATGTTTGAAATGTGATG+AGG - chr5_4:56979550-56979569 Msa0858980:CDS 25.0%
!!! ATTTTGGACCTAAGTTTTAA+AGG + chr5_4:56979597-56979616 None:intergenic 25.0%
!! AAAAAAATACTATGGTGCTA+TGG - chr5_4:56979895-56979914 Msa0858980:intron 25.0%
!!! AAAAAATACTATGGTGCTAT+GGG - chr5_4:56979896-56979915 Msa0858980:intron 25.0%
! AAAGAATATCGTACTAAGTA+TGG - chr5_4:56979977-56979996 Msa0858980:CDS 25.0%
GCTATATTATAATTCGCAGA+TGG - chr5_4:56978709-56978728 Msa0858980:intron 30.0%
TCTACTAATGACCTAATCTT+AGG + chr5_4:56978770-56978789 None:intergenic 30.0%
TAAGATTAGGTCATTAGTAG+AGG - chr5_4:56978769-56978788 Msa0858980:intron 30.0%
GCAGTCAATCTTTGTAAATT+TGG + chr5_4:56978894-56978913 None:intergenic 30.0%
TTTATGAATGCAGATGTCAT+AGG - chr5_4:56979068-56979087 Msa0858980:CDS 30.0%
CTTACAAGTGCTTATATTAG+TGG - chr5_4:56979221-56979240 Msa0858980:CDS 30.0%
!! TTGGGTAACCTTTAAAACTT+AGG - chr5_4:56979586-56979605 Msa0858980:intron 30.0%
! GGTTATATGCATTTTTACAG+TGG - chr5_4:56979761-56979780 Msa0858980:CDS 30.0%
ATAGAGTACATTGTTCATTG+TGG - chr5_4:56979786-56979805 Msa0858980:CDS 30.0%
TAGAGTACATTGTTCATTGT+GGG - chr5_4:56979787-56979806 Msa0858980:CDS 30.0%
!!! GGAATCTCAAATGCTTTTTT+TGG - chr5_4:56979917-56979936 Msa0858980:intron 30.0%
!!! TGTTTTAATCGTAGGATTGA+CGG - chr5_4:56980066-56980085 Msa0858980:CDS 30.0%
TTACATGTATAGTTTCTTCC+TGG - chr5_4:56980573-56980592 Msa0858980:intron 30.0%
TGACATTGCCTTAATAATGT+AGG - chr5_4:56980796-56980815 Msa0858980:CDS 30.0%
GACATTGCCTTAATAATGTA+GGG - chr5_4:56980797-56980816 Msa0858980:CDS 30.0%
ATTGTAAACAGAAACACGTA+CGG + chr5_4:56981021-56981040 None:intergenic 30.0%
!!! ATCTCAGATTTTTGATGATG+AGG - chr5_4:56981081-56981100 Msa0858980:CDS 30.0%
! TTATTTGGTTCAGAATGTAC+AGG - chr5_4:56981219-56981238 Msa0858980:intron 30.0%
TTGGATGATTGTGATATTGT+CGG - chr5_4:56981343-56981362 Msa0858980:CDS 30.0%
TGAATTCAGAAACAGTCCAA+AGG + chr5_4:56978570-56978589 None:intergenic 35.0%
!! GTCAAGAAGCATCAAATGAA+TGG + chr5_4:56978614-56978633 None:intergenic 35.0%
ATTAGGTCATTAGTAGAGGA+AGG - chr5_4:56978773-56978792 Msa0858980:intron 35.0%
TTAGGTCATTAGTAGAGGAA+GGG - chr5_4:56978774-56978793 Msa0858980:intron 35.0%
ACATCTGCATTCATAAACAG+TGG + chr5_4:56979065-56979084 None:intergenic 35.0%
AAGAGATGTCCTTAAAGAGA+AGG - chr5_4:56979103-56979122 Msa0858980:intron 35.0%
CATTCACAACCTTCTCTTTA+AGG + chr5_4:56979115-56979134 None:intergenic 35.0%
CTTAAAGAGAAGGTTGTGAA+TGG - chr5_4:56979113-56979132 Msa0858980:intron 35.0%
AAGTGAACACGAAGATTTGA+AGG + chr5_4:56979198-56979217 None:intergenic 35.0%
ACAAGTGCTTATATTAGTGG+TGG - chr5_4:56979224-56979243 Msa0858980:CDS 35.0%
TTTGGGGAATGTAAAGTGAT+TGG - chr5_4:56979394-56979413 Msa0858980:intron 35.0%
TTGGGGAATGTAAAGTGATT+GGG - chr5_4:56979395-56979414 Msa0858980:intron 35.0%
AAAGGTTACCCAAAATCAAG+TGG + chr5_4:56979579-56979598 None:intergenic 35.0%
TGTGGGATCAATATGCTTTA+AGG - chr5_4:56979804-56979823 Msa0858980:CDS 35.0%
!! GGATCAATATGCTTTAAGGA+TGG - chr5_4:56979808-56979827 Msa0858980:CDS 35.0%
GTACGATATTCTTTGACAAC+AGG + chr5_4:56979971-56979990 None:intergenic 35.0%
ATACGTCGGATGATTCAATA+AGG + chr5_4:56980194-56980213 None:intergenic 35.0%
GAGACAATACAATCAGACTA+AGG + chr5_4:56980309-56980328 None:intergenic 35.0%
GCAAGAACAATTACGTTACA+TGG + chr5_4:56980351-56980370 None:intergenic 35.0%
GTACAAGTTATGGACAATAC+TGG - chr5_4:56980618-56980637 Msa0858980:intron 35.0%
TCGCAATGTTTCAAACTATG+TGG - chr5_4:56980665-56980684 Msa0858980:intron 35.0%
CGCAATGTTTCAAACTATGT+GGG - chr5_4:56980666-56980685 Msa0858980:intron 35.0%
AAGATCTGATTGATGCTCAA+GGG - chr5_4:56980700-56980719 Msa0858980:intron 35.0%
CATTGAGGTGATTCACAAAA+CGG + chr5_4:56980749-56980768 None:intergenic 35.0%
CGCAATACAAAGGATTAGAT+TGG + chr5_4:56980774-56980793 None:intergenic 35.0%
ATTGCCTTAATAATGTAGGG+TGG - chr5_4:56980800-56980819 Msa0858980:CDS 35.0%
ATCAGAACACCTAAATCAGA+CGG + chr5_4:56980842-56980861 None:intergenic 35.0%
TCTGATTTAGGTGTTCTGAT+TGG - chr5_4:56980842-56980861 Msa0858980:intron 35.0%
TTTGATAAGATCAGCGTCAT+CGG + chr5_4:56980948-56980967 None:intergenic 35.0%
ATCTTTGTTGACATCAGTCT+TGG + chr5_4:56981272-56981291 None:intergenic 35.0%
GAAATGTGTGAAGATCGAAA+AGG - chr5_4:56981411-56981430 Msa0858980:CDS 35.0%
GAATGGCAGTGATTTCGTTA+GGG + chr5_4:56978597-56978616 None:intergenic 40.0%
TGAATGGCAGTGATTTCGTT+AGG + chr5_4:56978598-56978617 None:intergenic 40.0%
TTTGATGCTTCTTGACGACA+AGG - chr5_4:56978618-56978637 Msa0858980:CDS 40.0%
! AGGCTTTGGTACCTAAGATT+AGG - chr5_4:56978756-56978775 Msa0858980:intron 40.0%
TAGGTCATTAGTAGAGGAAG+GGG - chr5_4:56978775-56978794 Msa0858980:intron 40.0%
TGTCCAGTATAGCGAAACTT+AGG + chr5_4:56978842-56978861 None:intergenic 40.0%
AGTTTCGCTATACTGGACAT+AGG - chr5_4:56978843-56978862 Msa0858980:intron 40.0%
TGATTTCATCCCTTTCAGAG+AGG - chr5_4:56978937-56978956 Msa0858980:CDS 40.0%
! AATCAAGCACCTCTCTGAAA+GGG + chr5_4:56978949-56978968 None:intergenic 40.0%
ACCAAAGAGGACAGATATAC+TGG - chr5_4:56978971-56978990 Msa0858980:CDS 40.0%
ACCAGTATATCTGTCCTCTT+TGG + chr5_4:56978975-56978994 None:intergenic 40.0%
AAAGAGGACAGATATACTGG+TGG - chr5_4:56978974-56978993 Msa0858980:CDS 40.0%
AAGAGGACAGATATACTGGT+GGG - chr5_4:56978975-56978994 Msa0858980:CDS 40.0%
CAAAGTCATTGACCTTACCT+TGG - chr5_4:56979145-56979164 Msa0858980:intron 40.0%
!! ATGAGGTTGCCACTTGATTT+TGG - chr5_4:56979567-56979586 Msa0858980:intron 40.0%
!! TGAGGTTGCCACTTGATTTT+GGG - chr5_4:56979568-56979587 Msa0858980:intron 40.0%
AGGTTCAATATCACGACAAC+AGG + chr5_4:56979866-56979885 None:intergenic 40.0%
! AGAAGATTGACTCACACCTT+GGG + chr5_4:56980109-56980128 None:intergenic 40.0%
TGCATCATATCATCTGCAAG+GGG + chr5_4:56980147-56980166 None:intergenic 40.0%
CTGCATCATATCATCTGCAA+GGG + chr5_4:56980148-56980167 None:intergenic 40.0%
TCTGCATCATATCATCTGCA+AGG + chr5_4:56980149-56980168 None:intergenic 40.0%
TGGCTGCACACACATAATAA+GGG + chr5_4:56980331-56980350 None:intergenic 40.0%
ATGGCTGCACACACATAATA+AGG + chr5_4:56980332-56980351 None:intergenic 40.0%
ATTGTTCTTGCCTCTATCTG+TGG - chr5_4:56980360-56980379 Msa0858980:intron 40.0%
TTGTTCTTGCCTCTATCTGT+GGG - chr5_4:56980361-56980380 Msa0858980:intron 40.0%
CTTAATCCTTCCAGCACATT+TGG + chr5_4:56980424-56980443 None:intergenic 40.0%
GGAAGGATTAAGATCATTGC+TGG - chr5_4:56980432-56980451 Msa0858980:intron 40.0%
GGATTAAGATCATTGCTGGA+AGG - chr5_4:56980436-56980455 Msa0858980:intron 40.0%
TGTTGTTAGCAAACACACCT+AGG + chr5_4:56980507-56980526 None:intergenic 40.0%
! TCCTGGTTTGAACAGATTCA+AGG - chr5_4:56980590-56980609 Msa0858980:intron 40.0%
ACCTTGAATCTGTTCAAACC+AGG + chr5_4:56980594-56980613 None:intergenic 40.0%
CAAGGTGCATGTACAAGTTA+TGG - chr5_4:56980608-56980627 Msa0858980:intron 40.0%
CAAGATCTGATTGATGCTCA+AGG - chr5_4:56980699-56980718 Msa0858980:intron 40.0%
!! AGGATTAGATTGGAGCATTG+AGG + chr5_4:56980764-56980783 None:intergenic 40.0%
CAATGTCAGTCGCAATACAA+AGG + chr5_4:56980784-56980803 None:intergenic 40.0%
ACTGCCACCCTACATTATTA+AGG + chr5_4:56980807-56980826 None:intergenic 40.0%
TAAATCAGACGGGTATCCAT+CGG + chr5_4:56980831-56980850 None:intergenic 40.0%
TCAGAACACCTAAATCAGAC+GGG + chr5_4:56980841-56980860 None:intergenic 40.0%
CTTCACAGCTGGAGAAATTA+CGG - chr5_4:56980908-56980927 Msa0858980:intron 40.0%
TCCTTTGACACAAACTGATG+TGG - chr5_4:56981111-56981130 Msa0858980:CDS 40.0%
AACTAAGATGCTACCTCCAA+CGG + chr5_4:56981139-56981158 None:intergenic 40.0%
TGTACAGGTACAATTGCTTG+AGG - chr5_4:56981234-56981253 Msa0858980:intron 40.0%
! TGGAAAGAGATCTGCTGATT+TGG - chr5_4:56981324-56981343 Msa0858980:CDS 40.0%
!! ATTGTCGGCTCTAATGATGA+TGG - chr5_4:56981358-56981377 Msa0858980:CDS 40.0%
!! GCTCTAATGATGATGGTGAA+AGG - chr5_4:56981365-56981384 Msa0858980:CDS 40.0%
GATCTTCACACATTTCAGCT+TGG + chr5_4:56981407-56981426 None:intergenic 40.0%
TTCGCAGATGGGAAAGATAC+AGG - chr5_4:56978721-56978740 Msa0858980:intron 45.0%
AGGTCATTAGTAGAGGAAGG+GGG - chr5_4:56978776-56978795 Msa0858980:intron 45.0%
GCGAAACTTAGGCTCACTAT+GGG + chr5_4:56978831-56978850 None:intergenic 45.0%
AGCGAAACTTAGGCTCACTA+TGG + chr5_4:56978832-56978851 None:intergenic 45.0%
GAGCCTAAGTTTCGCTATAC+TGG - chr5_4:56978836-56978855 Msa0858980:intron 45.0%
GAATCAAGCACCTCTCTGAA+AGG + chr5_4:56978950-56978969 None:intergenic 45.0%
GGACATCTCTTTCAACCACA+TGG + chr5_4:56979094-56979113 None:intergenic 45.0%
ACTCACTGTCTTCCAAGGTA+AGG + chr5_4:56979160-56979179 None:intergenic 45.0%
CACTTACTCACTGTCTTCCA+AGG + chr5_4:56979165-56979184 None:intergenic 45.0%
GCAGAAATTTCAGTCACCCA+AGG - chr5_4:56980090-56980109 Msa0858980:CDS 45.0%
! CAGAAGATTGACTCACACCT+TGG + chr5_4:56980110-56980129 None:intergenic 45.0%
CAAGGTGTGAGTCAATCTTC+TGG - chr5_4:56980108-56980127 Msa0858980:CDS 45.0%
TCATAGTACCATCCGTACTC+TGG + chr5_4:56980393-56980412 None:intergenic 45.0%
! GGATTTTCTGTCCTTCGTCA+AGG - chr5_4:56980457-56980476 Msa0858980:intron 45.0%
CACAAAACGGTTACAGCACT+TGG + chr5_4:56980736-56980755 None:intergenic 45.0%
GATGGATACCCGTCTGATTT+AGG - chr5_4:56980830-56980849 Msa0858980:CDS 45.0%
CATTAAGCGTCATGACCTGA+AGG - chr5_4:56980973-56980992 Msa0858980:CDS 45.0%
GCCACATCAGTTTGTGTCAA+AGG + chr5_4:56981115-56981134 None:intergenic 45.0%
CAGGTACAATTGCTTGAGGA+AGG - chr5_4:56981238-56981257 Msa0858980:intron 45.0%
ACCTTGCTACACGGAGTAAT+CGG + chr5_4:56981301-56981320 None:intergenic 45.0%
TTTCCAGACACCTTGCTACA+CGG + chr5_4:56981310-56981329 None:intergenic 45.0%
TTCACACATTTCAGCTTGGC+AGG + chr5_4:56981403-56981422 None:intergenic 45.0%
TGCAGAGACAGGAGTTAGGA+TGG + chr5_4:56978500-56978519 None:intergenic 50.0%
CGATTGCAGAGACAGGAGTT+AGG + chr5_4:56978504-56978523 None:intergenic 50.0%
CTGTCTCTGCAATCGTTGCT+GGG - chr5_4:56978509-56978528 Msa0858980:CDS 50.0%
GTGTGCGTGTCATCAACCTT+TGG - chr5_4:56978551-56978570 Msa0858980:CDS 50.0%
ATGGGAAAGATACAGGCCTC+TGG - chr5_4:56978728-56978747 Msa0858980:intron 50.0%
TGGGAAAGATACAGGCCTCT+GGG - chr5_4:56978729-56978748 Msa0858980:intron 50.0%
TACCAAAGCCTTCTTCCCAG+AGG + chr5_4:56978747-56978766 None:intergenic 50.0%
! GGTGCTTGATTCGACCAAAG+AGG - chr5_4:56978958-56978977 Msa0858980:CDS 50.0%
TGCAGATGTCATAGGCCATG+TGG - chr5_4:56979076-56979095 Msa0858980:CDS 50.0%
ATCACGACAACAGGAGAGCT+GGG + chr5_4:56979857-56979876 None:intergenic 50.0%
TATCACGACAACAGGAGAGC+TGG + chr5_4:56979858-56979877 None:intergenic 50.0%
TGGCTCAATCCCACAGATAG+AGG + chr5_4:56980373-56980392 None:intergenic 50.0%
TGTGGGATTGAGCCAGAGTA+CGG - chr5_4:56980378-56980397 Msa0858980:intron 50.0%
!! TAGGCACAGCATTTCTGGTC+TGG + chr5_4:56980488-56980507 None:intergenic 50.0%
AGACCAGAAATGCTGTGCCT+AGG - chr5_4:56980487-56980506 Msa0858980:intron 50.0%
ACACCTAGGCACAGCATTTC+TGG + chr5_4:56980493-56980512 None:intergenic 50.0%
TCTGATTGATGCTCAAGGGC+AGG - chr5_4:56980704-56980723 Msa0858980:intron 50.0%
! ATGGCAACTTGCTTCACAGC+TGG - chr5_4:56980897-56980916 Msa0858980:intron 50.0%
CCTTGCTACACGGAGTAATC+GGG + chr5_4:56981300-56981319 None:intergenic 50.0%
CCAGCAACGATTGCAGAGAC+AGG + chr5_4:56978511-56978530 None:intergenic 55.0%
CCTGTCTCTGCAATCGTTGC+TGG - chr5_4:56978508-56978527 Msa0858980:CDS 55.0%
! GATACAGGCCTCTGGGAAGA+AGG - chr5_4:56978736-56978755 Msa0858980:intron 55.0%
GGGATCACGCGTCGTCAAAT+AGG + chr5_4:56979837-56979856 None:intergenic 55.0%
GGATTGAGCCAGAGTACGGA+TGG - chr5_4:56980382-56980401 Msa0858980:intron 55.0%
GATGCCTGCACCAAATGTGC+TGG - chr5_4:56980411-56980430 Msa0858980:intron 55.0%
!! CCTTCCAGCACATTTGGTGC+AGG + chr5_4:56980418-56980437 None:intergenic 55.0%
CCTGCACCAAATGTGCTGGA+AGG - chr5_4:56980415-56980434 Msa0858980:intron 55.0%
GTCTGGTTGCACCTTGACGA+AGG + chr5_4:56980471-56980490 None:intergenic 55.0%
ATGTAGGGTGGCAGTTCCGA+TGG - chr5_4:56980812-56980831 Msa0858980:CDS 55.0%
CACGATCAGCACTCACCTTC+AGG + chr5_4:56980991-56981010 None:intergenic 55.0%
ACAAACTGATGTGGCGCCGT+TGG - chr5_4:56981120-56981139 Msa0858980:CDS 55.0%
CCCGATTACTCCGTGTAGCA+AGG - chr5_4:56981297-56981316 Msa0858980:CDS 55.0%
! ACTCCGTGTAGCAAGGTGTC+TGG - chr5_4:56981304-56981323 Msa0858980:CDS 55.0%
! GGCCTCTGGGAAGAAGGCTT+TGG - chr5_4:56978742-56978761 Msa0858980:intron 60.0%
AACTGATGTGGCGCCGTTGG+AGG - chr5_4:56981123-56981142 Msa0858980:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 56978490 56981441 56978490 ID=Msa0858980;Name=Msa0858980
chr5_4 mRNA 56978490 56981441 56978490 ID=Msa0858980-mRNA-1;Parent=Msa0858980;Name=Msa0858980-mRNA-1;_AED=0.05;_eAED=0.07;_QI=0|0|0|1|1|1|10|0|526
chr5_4 exon 56981292 56981441 56981292 ID=Msa0858980-mRNA-1:exon:17394;Parent=Msa0858980-mRNA-1
chr5_4 exon 56980939 56981203 56980939 ID=Msa0858980-mRNA-1:exon:17393;Parent=Msa0858980-mRNA-1
chr5_4 exon 56980754 56980850 56980754 ID=Msa0858980-mRNA-1:exon:17392;Parent=Msa0858980-mRNA-1
chr5_4 exon 56979938 56980150 56979938 ID=Msa0858980-mRNA-1:exon:17391;Parent=Msa0858980-mRNA-1
chr5_4 exon 56979722 56979851 56979722 ID=Msa0858980-mRNA-1:exon:17390;Parent=Msa0858980-mRNA-1
chr5_4 exon 56979423 56979583 56979423 ID=Msa0858980-mRNA-1:exon:17389;Parent=Msa0858980-mRNA-1
chr5_4 exon 56979206 56979326 56979206 ID=Msa0858980-mRNA-1:exon:17388;Parent=Msa0858980-mRNA-1
chr5_4 exon 56978937 56979113 56978937 ID=Msa0858980-mRNA-1:exon:17387;Parent=Msa0858980-mRNA-1
chr5_4 exon 56978787 56978843 56978787 ID=Msa0858980-mRNA-1:exon:17386;Parent=Msa0858980-mRNA-1
chr5_4 exon 56978490 56978699 56978490 ID=Msa0858980-mRNA-1:exon:17385;Parent=Msa0858980-mRNA-1
chr5_4 CDS 56981292 56981441 56981292 ID=Msa0858980-mRNA-1:cds;Parent=Msa0858980-mRNA-1
chr5_4 CDS 56980939 56981203 56980939 ID=Msa0858980-mRNA-1:cds;Parent=Msa0858980-mRNA-1
chr5_4 CDS 56980754 56980850 56980754 ID=Msa0858980-mRNA-1:cds;Parent=Msa0858980-mRNA-1
chr5_4 CDS 56979938 56980150 56979938 ID=Msa0858980-mRNA-1:cds;Parent=Msa0858980-mRNA-1
chr5_4 CDS 56979722 56979851 56979722 ID=Msa0858980-mRNA-1:cds;Parent=Msa0858980-mRNA-1
chr5_4 CDS 56979423 56979583 56979423 ID=Msa0858980-mRNA-1:cds;Parent=Msa0858980-mRNA-1
chr5_4 CDS 56979206 56979326 56979206 ID=Msa0858980-mRNA-1:cds;Parent=Msa0858980-mRNA-1
chr5_4 CDS 56978937 56979113 56978937 ID=Msa0858980-mRNA-1:cds;Parent=Msa0858980-mRNA-1
chr5_4 CDS 56978787 56978843 56978787 ID=Msa0858980-mRNA-1:cds;Parent=Msa0858980-mRNA-1
chr5_4 CDS 56978490 56978699 56978490 ID=Msa0858980-mRNA-1:cds;Parent=Msa0858980-mRNA-1
Gene Sequence

>Msa0858980

ATGGCTTCCATCCTAACTCCTGTCTCTGCAATCGTTGCTGGGAAAATTAAGCTCAAAATTCGTGTGCGTGTCATCAACCTTTGGACTGTTTCTGAATTCAACAACCCTAACGAAATCACTGCCATTCATTTGATGCTTCTTGACGACAAGATGGGAAAGATACAGGCCTCTGGGAAGAAGGCTTTGGTACCTAAGATTAGGTCATTAGTAGAGGAAGGGGGTTGTTATGAGATCGAAAATTTACTGGTGACCCATAGTGAGCCTAAGTTTCGCTATACTGGACATAGGTTCAGACTTAATTTAATTGACCTAACCAAATTTACAAAGATTGACTGCAATGATATAGCAAAATATCATTATGATTTCATCCCTTTCAGAGAGGTGCTTGATTCGACCAAAGAGGACAGATATACTGATGTCATAGGCCATGTGGTTGAAAGAGATGTCCTTAAAGAGAAGGTTGTGAATGGTAAGAAGAGCAAAGTCATTGACCTTACCTTGGAAGACAGTGATGGCAATAGAGTACATTGTTCATTGTGGGATCAATATGCTTTAAGGATGGATGCCTATTTGACGACGCGTGATCCCAGCTCTCCTGTTGTCGTGATATTGAACCTTTGCAAACTAAAAAAATACTATGGTGCTATGGGAATCTCAAATGCTTTTTTTGGAACAAAGCTTATTTTAGATGATGATTTACCTGTTGTCAAAGAATATCGTACTAAGATTGACGGTGCAGAAATTTCAGTCACCCAAGGTGTGAGTCAATCTTCTGGAGCTTTGATTGTACCCCTTGCAGATGATATGATGCAGACAAAAATGATGACAATCGAGAACCTTATTGAATCATCCGACCCATGTAACGTAATTGTTCTTGCCTCTATCTGTGGGATTGAGCCAGAGTACGGATGGTACTATGATGCCTGCACCAAATGTGCTGGAAGGATTAAGATCATTGCTGGAAGGATTTTCTGTCCTTCGTCAAGGTGCAACCAGACCAGAAATGCTGTGCCTAGATTCAAGGTGCATGTACAAGTTATGGACAATACTGGATCAACAAGCTTCATTTTGTTTGATCGCAATGTTTCAAACTATGTGGGTAAGAGTGTTCAAGATCTGATTGATGCTCAAGGGCAGGGTGGCAGTTCCGATGGATACCCGTCTGATTTAGGTGTTCTGATTGGAAAAAAAATGCTTTTTAAGGTTGAAATTACAAATGGCAACTTGCTTCACAGCTGGAGAAATTACGGTGTCAAGCGAACATCCGATGACGCTGATCTTATCAAAATGTTCATTAAGCGTCATGACCTGAAGATTTTTGATGATGAGGACGATGTTCCTTTGACACAAACTGATGTGGCGCCGTTGGAGAATGTACAGGTACAATTGCTTGAGGAAGGTGACTCAACCAAGACTGATGTCAACAAAGATGAAGACCCGATTACTCCGTGTAGCAAGGTGTCTGGAAAGAGATCTGCTGATTTGGATGATTGTGATATTGTCGGCTCTAATGATGATGGTGAAAGGTCTATCAACAAACCTGCCAAGCTGAAATGTGTGAAGATCGAAAAGGATGATTGA

Protein sequence

>Msa0858980

MASILTPVSAIVAGKIKLKIRVRVINLWTVSEFNNPNEITAIHLMLLDDKMGKIQASGKKALVPKIRSLVEEGGCYEIENLLVTHSEPKFRYTGHRFRLNLIDLTKFTKIDCNDIAKYHYDFIPFREVLDSTKEDRYTDVIGHVVERDVLKEKVVNGKKSKVIDLTLEDSDGNRVHCSLWDQYALRMDAYLTTRDPSSPVVVILNLCKLKKYYGAMGISNAFFGTKLILDDDLPVVKEYRTKIDGAEISVTQGVSQSSGALIVPLADDMMQTKMMTIENLIESSDPCNVIVLASICGIEPEYGWYYDACTKCAGRIKIIAGRIFCPSSRCNQTRNAVPRFKVHVQVMDNTGSTSFILFDRNVSNYVGKSVQDLIDAQGQGGSSDGYPSDLGVLIGKKMLFKVEITNGNLLHSWRNYGVKRTSDDADLIKMFIKRHDLKIFDDEDDVPLTQTDVAPLENVQVQLLEEGDSTKTDVNKDEDPITPCSKVSGKRSADLDDCDIVGSNDDGERSINKPAKLKCVKIEKDD*