Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859300 | XP_003616764.1 | 83.120 | 391 | 15 | 2 | 1 | 340 | 1 | 391 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859300 | sp|P49572|TRPC_ARATH | 67.208 | 308 | 75 | 2 | 58 | 339 | 93 | 400 | 2.84e-145 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859300 | G7KH34 | 83.120 | 391 | 15 | 2 | 1 | 340 | 1 | 391 | 0.0 | 630 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043960 | Msa0859300 | -0.809487 | 1.846671e-50 | -8.615850e-47 |
| Msa0044050 | Msa0859300 | -0.808054 | 3.739800e-50 | -8.615850e-47 |
| Msa0783520 | Msa0859300 | 0.858746 | 6.668440e-63 | -8.615850e-47 |
| Msa0183800 | Msa0859300 | -0.812913 | 3.337708e-51 | -8.615850e-47 |
| Msa0859300 | Msa1442220 | -0.810311 | 1.227943e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859300 | MtrunA17_Chr5g0438151 | 83.120 | 391 | 15 | 2 | 1 | 340 | 1 | 391 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859300 | AT5G48220.1 | 73.226 | 310 | 58 | 1 | 55 | 339 | 69 | 378 | 1.04e-168 | 474 |
| Msa0859300 | AT5G48220.3 | 73.226 | 310 | 58 | 1 | 55 | 339 | 54 | 363 | 1.54e-168 | 474 |
| Msa0859300 | AT5G48220.4 | 73.226 | 310 | 58 | 1 | 55 | 339 | 6 | 315 | 1.96e-168 | 471 |
| Msa0859300 | AT5G48220.2 | 73.226 | 310 | 58 | 1 | 55 | 339 | 6 | 315 | 1.96e-168 | 471 |
| Msa0859300 | AT2G04400.1 | 67.208 | 308 | 75 | 2 | 58 | 339 | 93 | 400 | 2.89e-146 | 419 |
Find 99 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGGAAGCTTTGAAAATT+TGG | 0.165193 | 5_4:-57649027 | Msa0859300:intron |
| GAACAAGAATTGTTGTTAAA+AGG | 0.209194 | 5_4:+57652293 | None:intergenic |
| ATGCATAATATACTACATTA+TGG | 0.218732 | 5_4:+57647248 | None:intergenic |
| GTTTAGATGGTTGGGGAATC+TGG | 0.267921 | 5_4:-57647956 | Msa0859300:intron |
| AGGGAATTCGATCGTGTTCT+TGG | 0.315417 | 5_4:-57648279 | Msa0859300:CDS |
| AGTTGGAGGAATAGTGGTTC+TGG | 0.317340 | 5_4:+57652116 | None:intergenic |
| CTACCCAAGGTATAAGAATA+AGG | 0.335290 | 5_4:-57651360 | Msa0859300:intron |
| TGAAAATGCACCTCCTGTTC+GGG | 0.336397 | 5_4:-57651082 | Msa0859300:CDS |
| ATGGATATGTTTAGATGGTT+GGG | 0.336646 | 5_4:-57647964 | Msa0859300:intron |
| TTACATAGGAGATTAAATTA+AGG | 0.337231 | 5_4:-57647446 | Msa0859300:three_prime_UTR |
| AAGGACTGCATCTGCACCTT+TGG | 0.337273 | 5_4:+57648822 | None:intergenic |
| AAAGGTCCTACATAATGATT+AGG | 0.338327 | 5_4:+57651316 | None:intergenic |
| TTGAAAATGCACCTCCTGTT+CGG | 0.344054 | 5_4:-57651083 | Msa0859300:CDS |
| AGAAAGAAAACTCCTTCTTA+TGG | 0.344185 | 5_4:-57651118 | Msa0859300:CDS |
| AGATTGCTAATTCCCTTTCC+AGG | 0.344807 | 5_4:+57647504 | None:intergenic |
| TTCTGGTTCAAACATTGAAC+TGG | 0.357536 | 5_4:+57652388 | None:intergenic |
| AGGAATAGTGGTTCTGGGAT+TGG | 0.374224 | 5_4:+57652122 | None:intergenic |
| TGTACATAAGCAATGTCTTC+AGG | 0.374331 | 5_4:+57647923 | None:intergenic |
| TATGGATATGTTTAGATGGT+TGG | 0.386602 | 5_4:-57647965 | Msa0859300:intron |
| TATTTCCCTCGTTCTGCAAC+CGG | 0.387527 | 5_4:+57651287 | None:intergenic |
| AATTGTTGTTAAAAGGAAAC+AGG | 0.392085 | 5_4:+57652300 | None:intergenic |
| AATCAAGGATTCCATTGAAA+AGG | 0.396547 | 5_4:+57652185 | None:intergenic |
| AAGGGAATTAGCAATCTCTT+TGG | 0.397539 | 5_4:-57647498 | Msa0859300:CDS |
| GGAATCAACAATCGTAATCT+TGG | 0.405503 | 5_4:-57648234 | Msa0859300:intron |
| GTTGGAGGAATAGTGGTTCT+GGG | 0.405718 | 5_4:+57652117 | None:intergenic |
| AAGGTCCTACATAATGATTA+GGG | 0.406698 | 5_4:+57651317 | None:intergenic |
| TAATGAACGAACTGGATTGC+CGG | 0.409949 | 5_4:-57651034 | Msa0859300:CDS |
| TGCATAATATACTACATTAT+GGG | 0.413141 | 5_4:+57647249 | None:intergenic |
| GTAAAACGGCGGCAATTAGA+AGG | 0.423033 | 5_4:+57648803 | None:intergenic |
| GAAAACTCCTTCTTATGGTT+AGG | 0.425086 | 5_4:-57651113 | Msa0859300:CDS |
| TTGGAGTTAATAAGAAATGC+TGG | 0.428736 | 5_4:-57649008 | Msa0859300:CDS |
| TGAACAACAATCTGTAAAAT+CGG | 0.431510 | 5_4:-57652359 | Msa0859300:five_prime_UTR |
| GACTTGAGTTGGAGGAATAG+TGG | 0.436368 | 5_4:+57652110 | None:intergenic |
| CGATCGTGTTCTTGGAATAG+AGG | 0.438551 | 5_4:-57648271 | Msa0859300:CDS |
| GTTACCCTTGAGAGAAATCA+AGG | 0.441183 | 5_4:+57652170 | None:intergenic |
| ACCACGAAGAAGCTTCTTGA+AGG | 0.446760 | 5_4:-57648095 | Msa0859300:CDS |
| TCCTTCAAGAAGCTTCTTCG+TGG | 0.451429 | 5_4:+57648094 | None:intergenic |
| ATTGTAGCCGAACCTTCATT+AGG | 0.459178 | 5_4:+57651463 | None:intergenic |
| ATAGAGGGCGTTGAGCTCAT+TGG | 0.461415 | 5_4:-57648255 | Msa0859300:CDS |
| TGAATTCTTTGCACAACAAA+GGG | 0.461733 | 5_4:+57648878 | None:intergenic |
| AATAAGAAATGCTGGAGTAA+AGG | 0.463960 | 5_4:-57649000 | Msa0859300:intron |
| GTTAAGATATGCAAATTACT+TGG | 0.466429 | 5_4:-57648757 | Msa0859300:CDS |
| GATATGCAAATTACTTGGAC+TGG | 0.466507 | 5_4:-57648752 | Msa0859300:CDS |
| CTATAAGTATTGACTTGAGT+TGG | 0.466810 | 5_4:+57652099 | None:intergenic |
| TCTCTCAAGATGCCTCTACT+TGG | 0.471626 | 5_4:+57650982 | None:intergenic |
| TGTACACAACATAACCTCTT+CGG | 0.471854 | 5_4:-57652267 | Msa0859300:five_prime_UTR |
| AAGAATTCATTATAGATGCT+TGG | 0.471977 | 5_4:-57648864 | Msa0859300:CDS |
| GGCGGAGCCTAATGAAGGTT+CGG | 0.479822 | 5_4:-57651470 | Msa0859300:CDS |
| TTCTGCAACCGGAATTGAAA+AGG | 0.484408 | 5_4:+57651298 | None:intergenic |
| GCCCCAATAAAATCCCGAAC+AGG | 0.484947 | 5_4:+57651069 | None:intergenic |
| ATTGTGAAACAAAGTGATCC+TGG | 0.486316 | 5_4:-57647522 | Msa0859300:CDS |
| GGAATCCTTGATTTCTCTCA+AGG | 0.486941 | 5_4:-57652175 | Msa0859300:CDS |
| AGGGCAGCTAATGAACGAAC+TGG | 0.487175 | 5_4:-57651042 | Msa0859300:CDS |
| GATTCCATTGAAAAGGGTAA+TGG | 0.491463 | 5_4:+57652192 | None:intergenic |
| AATGAACGAACTGGATTGCC+GGG | 0.495625 | 5_4:-57651033 | Msa0859300:CDS |
| ATGAATTCTTTGCACAACAA+AGG | 0.499202 | 5_4:+57648877 | None:intergenic |
| ATCAAGGATTCCATTGAAAA+GGG | 0.501399 | 5_4:+57652186 | None:intergenic |
| AAATACACCGCGTAACATCT+TGG | 0.503798 | 5_4:-57651269 | Msa0859300:CDS |
| ATAAGGAGAAGACCACCAAC+TGG | 0.508374 | 5_4:-57651343 | Msa0859300:CDS |
| TTGAGTTGACTGATTTACAT+AGG | 0.508462 | 5_4:-57647460 | Msa0859300:exon |
| TTAATACAAGCAAATACAAA+AGG | 0.511510 | 5_4:+57647406 | None:intergenic |
| GATTAGGCGGAGCCTAATGA+AGG | 0.513132 | 5_4:-57651475 | Msa0859300:intron |
| TCGGCTACAATAGCCACATC+TGG | 0.513917 | 5_4:-57651451 | Msa0859300:intron |
| TAAGTATTGACTTGAGTTGG+AGG | 0.516113 | 5_4:+57652102 | None:intergenic |
| CTCTACTATGCTCGATCCAA+AGG | 0.519675 | 5_4:-57648838 | Msa0859300:CDS |
| ATGTATTTGATGTCAAGATC+AGG | 0.527017 | 5_4:+57648781 | None:intergenic |
| TTGACTTCAGCAATCAATCC+CGG | 0.531405 | 5_4:+57651015 | None:intergenic |
| TGGATATGTTTAGATGGTTG+GGG | 0.532058 | 5_4:-57647963 | Msa0859300:intron |
| ATTGCTTATGTACAAGAAGC+AGG | 0.536943 | 5_4:-57647914 | Msa0859300:CDS |
| GATGTCAAGATCAGGTAAAA+CGG | 0.544986 | 5_4:+57648789 | None:intergenic |
| ACTCCTTCTTATGGTTAGGA+AGG | 0.546477 | 5_4:-57651109 | Msa0859300:CDS |
| AAACAAAGTGATCCTGGAAA+GGG | 0.548778 | 5_4:-57647516 | Msa0859300:CDS |
| TAATGTAGGTGCACGATGAG+AGG | 0.562059 | 5_4:-57648299 | Msa0859300:intron |
| AATGTAGGTGCACGATGAGA+GGG | 0.565766 | 5_4:-57648298 | Msa0859300:intron |
| GGGCCTTCCTAACCATAAGA+AGG | 0.572958 | 5_4:+57651106 | None:intergenic |
| TCAATTCCGGTTGCAGAACG+AGG | 0.575802 | 5_4:-57651293 | Msa0859300:CDS |
| GATCGTGTTCTTGGAATAGA+GGG | 0.577340 | 5_4:-57648270 | Msa0859300:CDS |
| CCAATAAAATCCCGAACAGG+AGG | 0.579688 | 5_4:+57651072 | None:intergenic |
| ATTGATTGCTGAAGTCAAGA+AGG | 0.582300 | 5_4:-57651010 | Msa0859300:CDS |
| GAAACAAAGTGATCCTGGAA+AGG | 0.587322 | 5_4:-57647517 | Msa0859300:CDS |
| GTTCAAACATTGAACTGGGT+AGG | 0.591848 | 5_4:+57652393 | None:intergenic |
| CAATTCCGGTTGCAGAACGA+GGG | 0.593820 | 5_4:-57651292 | Msa0859300:CDS |
| TGATCTTGACATCAAATACA+TGG | 0.599333 | 5_4:-57648779 | Msa0859300:CDS |
| TGGACTGGCAGCTCTTGTTG+AGG | 0.600595 | 5_4:-57648737 | Msa0859300:intron |
| GGAAGAGATTGTGTGGAACA+AGG | 0.601540 | 5_4:-57651248 | Msa0859300:CDS |
| CAAGGACAAAGAAGTCGCGC+AGG | 0.602152 | 5_4:-57651230 | Msa0859300:intron |
| TGGGATTGGAAGAGAACGAA+GGG | 0.606231 | 5_4:+57652136 | None:intergenic |
| AGAGGTTATGTTGTGTACAA+AGG | 0.607210 | 5_4:+57652271 | None:intergenic |
| AACCACAGATTCACCAGATG+TGG | 0.614744 | 5_4:+57651438 | None:intergenic |
| TCTGGTTCAAACATTGAACT+GGG | 0.620435 | 5_4:+57652389 | None:intergenic |
| GAATCCTTGATTTCTCTCAA+GGG | 0.623977 | 5_4:-57652174 | Msa0859300:CDS |
| AAGAAGGCTTCACCAAGTAG+AGG | 0.628444 | 5_4:-57650994 | Msa0859300:CDS |
| AAGCTTCTTGAAGGAGAGCG+AGG | 0.630844 | 5_4:-57648086 | Msa0859300:CDS |
| GGTCCTACATAATGATTAGG+GGG | 0.633768 | 5_4:+57651319 | None:intergenic |
| ACATCTTGGAAGAGATTGTG+TGG | 0.641943 | 5_4:-57651255 | Msa0859300:CDS |
| AGGTCCTACATAATGATTAG+GGG | 0.661433 | 5_4:+57651318 | None:intergenic |
| CTGGGATTGGAAGAGAACGA+AGG | 0.670959 | 5_4:+57652135 | None:intergenic |
| ATCTCTTCCAAGATGTTACG+CGG | 0.689323 | 5_4:+57651262 | None:intergenic |
| GTCAAGATCAGGTAAAACGG+CGG | 0.711343 | 5_4:+57648792 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTATATAAAACAAAAA+GGG | + | chr5_4:57647937-57647956 | None:intergenic | 10.0% |
| !! | AAACATTATATAAAACAAAA+AGG | + | chr5_4:57647938-57647957 | None:intergenic | 10.0% |
| !!! | TGTTTTATATAATGTTTTTT+TGG | - | chr5_4:57647941-57647960 | Msa0859300:CDS | 10.0% |
| !! | TAACTATAAAAATTTGTATA+TGG | + | chr5_4:57651898-57651917 | None:intergenic | 10.0% |
| !!! | TTTTTTGTTGTATATTTATC+TGG | - | chr5_4:57647622-57647641 | Msa0859300:intron | 15.0% |
| !!! | ATAATGTTTTTGTGATTATT+TGG | - | chr5_4:57647771-57647790 | Msa0859300:intron | 15.0% |
| !!! | ATTTTTTTGGTTTAATTTTG+AGG | - | chr5_4:57647909-57647928 | Msa0859300:CDS | 15.0% |
| !!! | ATTTTTTGTATTTAATTGAG+AGG | - | chr5_4:57648070-57648089 | Msa0859300:CDS | 15.0% |
| !! | AATATGATCAAAATCAAAAA+GGG | + | chr5_4:57648098-57648117 | None:intergenic | 15.0% |
| !! | AAATATGATCAAAATCAAAA+AGG | + | chr5_4:57648099-57648118 | None:intergenic | 15.0% |
| !!! | TTTGATTTTGATCATATTTT+TGG | - | chr5_4:57648100-57648119 | Msa0859300:CDS | 15.0% |
| !!! | TTGATTTTGATCATATTTTT+GGG | - | chr5_4:57648101-57648120 | Msa0859300:CDS | 15.0% |
| !!! | AAGTTTATTTTGTATAGTTA+CGG | + | chr5_4:57651119-57651138 | None:intergenic | 15.0% |
| !!! | GAAATTTAATGTTTTAATGT+AGG | - | chr5_4:57651301-57651320 | Msa0859300:CDS | 15.0% |
| !! | TGTCTTAATATTTATACTTA+AGG | - | chr5_4:57651429-57651448 | Msa0859300:intron | 15.0% |
| !! | ACTTTAAACTAATGATTATA+TGG | - | chr5_4:57651631-57651650 | Msa0859300:intron | 15.0% |
| !!! | GATTTGTTATTTTGTTTGTA+TGG | + | chr5_4:57647295-57647314 | None:intergenic | 20.0% |
| !! | AACAATAAAGCAATACAAAA+AGG | + | chr5_4:57647604-57647623 | None:intergenic | 20.0% |
| !!! | TTTCTCTCATTTTTCTTTTT+GGG | - | chr5_4:57647646-57647665 | Msa0859300:intron | 20.0% |
| !!! | ATTATTTGGTGTTATGATTA+TGG | - | chr5_4:57647785-57647804 | Msa0859300:intron | 20.0% |
| !!! | GTTGATGCATATTATTTTTT+TGG | - | chr5_4:57647896-57647915 | Msa0859300:intron | 20.0% |
| !!! | ATTATTTGCTGTTTTGATTA+AGG | - | chr5_4:57647964-57647983 | Msa0859300:intron | 20.0% |
| !!! | GATTATTTGATGTTTTGATT+AGG | - | chr5_4:57648123-57648142 | Msa0859300:intron | 20.0% |
| !! | AGTTCATATTTACATTAACT+GGG | + | chr5_4:57649199-57649218 | None:intergenic | 20.0% |
| !! | AAGTTCATATTTACATTAAC+TGG | + | chr5_4:57649200-57649219 | None:intergenic | 20.0% |
| !! | ATGTAAATATGAACTTATGA+AGG | - | chr5_4:57649204-57649223 | Msa0859300:intron | 20.0% |
| !! | TAAAAAAGAAAAAACAGAAC+AGG | + | chr5_4:57649415-57649434 | None:intergenic | 20.0% |
| !!! | TGTTATTAAGTCGATTATTT+TGG | - | chr5_4:57649445-57649464 | Msa0859300:intron | 20.0% |
| !!! | GTTTGTTTTGTGAAATTTTA+AGG | + | chr5_4:57649591-57649610 | None:intergenic | 20.0% |
| !! | GAAAAAGAAATCTTAAATAG+TGG | + | chr5_4:57649814-57649833 | None:intergenic | 20.0% |
| !!! | TTTTATCATTCATTTCATAC+TGG | - | chr5_4:57650098-57650117 | Msa0859300:intron | 20.0% |
| !! | TACTTGCAAGTATAATAAAT+AGG | + | chr5_4:57651062-57651081 | None:intergenic | 20.0% |
| !!! | TTGGATTTATATCTTTCTTT+TGG | - | chr5_4:57651279-57651298 | Msa0859300:CDS | 20.0% |
| !! | ATTATATGGATATGTTTAGA+TGG | - | chr5_4:57651645-57651664 | Msa0859300:intron | 20.0% |
| !! | TTACATAGGAGATTAAATTA+AGG | - | chr5_4:57652168-57652187 | Msa0859300:CDS | 20.0% |
| !! | TTAATACAAGCAAATACAAA+AGG | + | chr5_4:57652211-57652230 | None:intergenic | 20.0% |
| !! | TGCATAATATACTACATTAT+GGG | + | chr5_4:57652368-57652387 | None:intergenic | 20.0% |
| !! | ATGCATAATATACTACATTA+TGG | + | chr5_4:57652369-57652388 | None:intergenic | 20.0% |
| ! | TGAACAACAATCTGTAAAAT+CGG | - | chr5_4:57647255-57647274 | Msa0859300:three_prime_UTR | 25.0% |
| !! | AATTGTTGTTAAAAGGAAAC+AGG | + | chr5_4:57647317-57647336 | None:intergenic | 25.0% |
| !! | GAACAAGAATTGTTGTTAAA+AGG | + | chr5_4:57647324-57647343 | None:intergenic | 25.0% |
| !!! | CTTTCTCTCATTTTTCTTTT+TGG | - | chr5_4:57647645-57647664 | Msa0859300:intron | 25.0% |
| !!! | TTCTCTCATTTTTCTTTTTG+GGG | - | chr5_4:57647647-57647666 | Msa0859300:intron | 25.0% |
| !! | TGGTTTAGTTGAATTTTGAA+TGG | - | chr5_4:57647673-57647692 | Msa0859300:intron | 25.0% |
| ! | AAAACTAAATTCACTAGATG+TGG | + | chr5_4:57648020-57648039 | None:intergenic | 25.0% |
| !!! | TATTTGATGTTTTGATTAGG+CGG | - | chr5_4:57648126-57648145 | Msa0859300:intron | 25.0% |
| ! | TTTAACCAATGAGATTCAAA+GGG | + | chr5_4:57648951-57648970 | None:intergenic | 25.0% |
| ! | ATTTAACCAATGAGATTCAA+AGG | + | chr5_4:57648952-57648971 | None:intergenic | 25.0% |
| ! | GTTCATATTTACATTAACTG+GGG | + | chr5_4:57649198-57649217 | None:intergenic | 25.0% |
| !! | TTATCAGTTGATATCAAGTA+CGG | - | chr5_4:57649303-57649322 | Msa0859300:intron | 25.0% |
| ! | CAAATGAACTTCCAAAAAAT+AGG | + | chr5_4:57649333-57649352 | None:intergenic | 25.0% |
| !!! | AGAAGTATTGCTTCAAAATA+AGG | - | chr5_4:57649388-57649407 | Msa0859300:intron | 25.0% |
| !!! | GAAGTATTGCTTCAAAATAA+GGG | - | chr5_4:57649389-57649408 | Msa0859300:intron | 25.0% |
| ! | GAAGAAATAAAAACTGACAA+TGG | + | chr5_4:57649529-57649548 | None:intergenic | 25.0% |
| !!! | GTTTTTATTTCTTCTCTTCA+CGG | - | chr5_4:57649535-57649554 | Msa0859300:intron | 25.0% |
| !!! | TGAATTGTTGATTCAGTTTT+GGG | - | chr5_4:57649674-57649693 | Msa0859300:intron | 25.0% |
| !!! | TAATATTTTGAGACCAAAAG+AGG | - | chr5_4:57649845-57649864 | Msa0859300:intron | 25.0% |
| !!! | AATATTTTGAGACCAAAAGA+GGG | - | chr5_4:57649846-57649865 | Msa0859300:intron | 25.0% |
| !!! | AACAGATGAGAAGTATTTTA+AGG | - | chr5_4:57650432-57650451 | Msa0859300:intron | 25.0% |
| ! | GTAGAATCAATCTTATATCA+AGG | + | chr5_4:57650663-57650682 | None:intergenic | 25.0% |
| !! | GGTCTATATAAAGTATTAGA+TGG | + | chr5_4:57650685-57650704 | None:intergenic | 25.0% |
| ! | AAGAATTCATTATAGATGCT+TGG | - | chr5_4:57650750-57650769 | Msa0859300:intron | 25.0% |
| ! | GTTAAGATATGCAAATTACT+TGG | - | chr5_4:57650857-57650876 | Msa0859300:intron | 25.0% |
| ! | AAATCAGTCATAACTATTCA+AGG | + | chr5_4:57651151-57651170 | None:intergenic | 25.0% |
| ! | TTCAACAGATATAAGAAACA+TGG | + | chr5_4:57651257-57651276 | None:intergenic | 25.0% |
| ! | TTCTTATATCTGTTGAATCT+TGG | - | chr5_4:57651260-57651279 | Msa0859300:CDS | 25.0% |
| !! | GTCAGATCTTTAAAAACATT+TGG | - | chr5_4:57651931-57651950 | Msa0859300:intron | 25.0% |
| !!! | AATTGTTTCTGATTTGTTGA+CGG | - | chr5_4:57651986-57652005 | Msa0859300:intron | 25.0% |
| !! | ATTGTTGTTCATGCATTTTC+TGG | + | chr5_4:57647246-57647265 | None:intergenic | 30.0% |
| ! | TGAAATTTTTGTAACCGAAG+AGG | + | chr5_4:57647364-57647383 | None:intergenic | 30.0% |
| ! | TTTTCCATTACCCTTTTCAA+TGG | - | chr5_4:57647418-57647437 | Msa0859300:three_prime_UTR | 30.0% |
| ATCAAGGATTCCATTGAAAA+GGG | + | chr5_4:57647431-57647450 | None:intergenic | 30.0% | |
| AATCAAGGATTCCATTGAAA+AGG | + | chr5_4:57647432-57647451 | None:intergenic | 30.0% | |
| !! | CTATAAGTATTGACTTGAGT+TGG | + | chr5_4:57647518-57647537 | None:intergenic | 30.0% |
| !! | ATTTGGTGTTATGATTATGG+TGG | - | chr5_4:57647788-57647807 | Msa0859300:intron | 30.0% |
| ATCAACACAATTCACAAGAT+GGG | + | chr5_4:57647842-57647861 | None:intergenic | 30.0% | |
| AATCAACACAATTCACAAGA+TGG | + | chr5_4:57647843-57647862 | None:intergenic | 30.0% | |
| AGTAGGAATGTTTCATAATG+AGG | - | chr5_4:57648225-57648244 | Msa0859300:intron | 30.0% | |
| TCTCCTTATTCTTATACCTT+GGG | + | chr5_4:57648260-57648279 | None:intergenic | 30.0% | |
| TTCTCCTTATTCTTATACCT+TGG | + | chr5_4:57648261-57648280 | None:intergenic | 30.0% | |
| AAGGTCCTACATAATGATTA+GGG | + | chr5_4:57648300-57648319 | None:intergenic | 30.0% | |
| AAAGGTCCTACATAATGATT+AGG | + | chr5_4:57648301-57648320 | None:intergenic | 30.0% | |
| TTGTGCTTATGTGAACTATT+TGG | - | chr5_4:57648461-57648480 | Msa0859300:intron | 30.0% | |
| AGAAAGAAAACTCCTTCTTA+TGG | - | chr5_4:57648496-57648515 | Msa0859300:intron | 30.0% | |
| GGAAATCAAAACAAACTTAC+TGG | + | chr5_4:57648668-57648687 | None:intergenic | 30.0% | |
| ATCTTTCTACTGATATCATG+TGG | - | chr5_4:57648706-57648725 | Msa0859300:intron | 30.0% | |
| TCTTTCTACTGATATCATGT+GGG | - | chr5_4:57648707-57648726 | Msa0859300:intron | 30.0% | |
| GATTCAGTGTTGTCAAATAA+CGG | - | chr5_4:57648763-57648782 | Msa0859300:CDS | 30.0% | |
| TTAACCAATGAGATTCAAAG+GGG | + | chr5_4:57648950-57648969 | None:intergenic | 30.0% | |
| ! | GAATCTCATTGGTTAAATTC+AGG | - | chr5_4:57648954-57648973 | Msa0859300:intron | 30.0% |
| TAGCAAGTAGATTTAGCAAA+AGG | + | chr5_4:57648998-57649017 | None:intergenic | 30.0% | |
| !! | TTTTATTTGAGTCATGCTTG+CGG | - | chr5_4:57649028-57649047 | Msa0859300:intron | 30.0% |
| !!! | TTGTTTTGATCATCTAATGC+AGG | - | chr5_4:57649092-57649111 | Msa0859300:intron | 30.0% |
| !!! | AGTACGGTATACCTATTTTT+TGG | - | chr5_4:57649319-57649338 | Msa0859300:intron | 30.0% |
| TGTTTCTCAATAACTAGTAC+AGG | - | chr5_4:57649351-57649370 | Msa0859300:intron | 30.0% | |
| TGTTTGATAAGTTGCTTGAA+GGG | + | chr5_4:57649506-57649525 | None:intergenic | 30.0% | |
| ! | AACAAACGTTGAAGTTGTTT+TGG | - | chr5_4:57649604-57649623 | Msa0859300:intron | 30.0% |
| !!! | CTGAATTGTTGATTCAGTTT+TGG | - | chr5_4:57649673-57649692 | Msa0859300:intron | 30.0% |
| !! | GAACTTTTAGGAAACTTAAG+AGG | - | chr5_4:57649868-57649887 | Msa0859300:intron | 30.0% |
| ! | AAACACTTTTCATTCACCTT+GGG | - | chr5_4:57649931-57649950 | Msa0859300:intron | 30.0% |
| TGAAAAAGGGGTAGAAATTA+TGG | - | chr5_4:57650032-57650051 | Msa0859300:intron | 30.0% | |
| CAATATTTGTTTACCCAGTT+TGG | + | chr5_4:57650166-57650185 | None:intergenic | 30.0% | |
| CAAACTGGGTAAACAAATAT+TGG | - | chr5_4:57650164-57650183 | Msa0859300:intron | 30.0% | |
| TATTCTCTTACCTGTAATCT+TGG | - | chr5_4:57650200-57650219 | Msa0859300:intron | 30.0% | |
| CAAACATAATCCAAGATTAC+AGG | + | chr5_4:57650213-57650232 | None:intergenic | 30.0% | |
| ATGTGTGGAACAAATATCAA+AGG | + | chr5_4:57650302-57650321 | None:intergenic | 30.0% | |
| AGGTTGAATTCAGAACATAA+TGG | - | chr5_4:57650342-57650361 | Msa0859300:intron | 30.0% | |
| ATTGCTCAATCTTATGAGAA+AGG | - | chr5_4:57650385-57650404 | Msa0859300:intron | 30.0% | |
| CACTGCTAAACGTTAATATT+TGG | - | chr5_4:57650498-57650517 | Msa0859300:intron | 30.0% | |
| !! | TGATTTGTGTTTTCTTGTTC+AGG | - | chr5_4:57650569-57650588 | Msa0859300:intron | 30.0% |
| ! | GATTTGTGTTTTCTTGTTCA+GGG | - | chr5_4:57650570-57650589 | Msa0859300:intron | 30.0% |
| TTGGAGTTAATAAGAAATGC+TGG | - | chr5_4:57650606-57650625 | Msa0859300:intron | 30.0% | |
| AATAAGAAATGCTGGAGTAA+AGG | - | chr5_4:57650614-57650633 | Msa0859300:intron | 30.0% | |
| TGAATTCTTTGCACAACAAA+GGG | + | chr5_4:57650739-57650758 | None:intergenic | 30.0% | |
| ATGAATTCTTTGCACAACAA+AGG | + | chr5_4:57650740-57650759 | None:intergenic | 30.0% | |
| ATGTATTTGATGTCAAGATC+AGG | + | chr5_4:57650836-57650855 | None:intergenic | 30.0% | |
| TGATCTTGACATCAAATACA+TGG | - | chr5_4:57650835-57650854 | Msa0859300:intron | 30.0% | |
| AAAAAATGTTGTATTCCAGC+CGG | + | chr5_4:57650948-57650967 | None:intergenic | 30.0% | |
| !! | TTACGGTTCTGAAGTAAATT+TGG | + | chr5_4:57651102-57651121 | None:intergenic | 30.0% |
| TATGGATATGTTTAGATGGT+TGG | - | chr5_4:57651649-57651668 | Msa0859300:intron | 30.0% | |
| ATGGATATGTTTAGATGGTT+GGG | - | chr5_4:57651650-57651669 | Msa0859300:intron | 30.0% | |
| AAAATTACGGACATCGATAT+TGG | + | chr5_4:57651861-57651880 | None:intergenic | 30.0% | |
| !! | AATTTTTCACAGGTTTTGGT+GGG | - | chr5_4:57652062-57652081 | Msa0859300:CDS | 30.0% |
| !! | TTGAGTTGACTGATTTACAT+AGG | - | chr5_4:57652154-57652173 | Msa0859300:CDS | 30.0% |
| ! | GTCAACGTAAAAAGATGTTT+TGG | + | chr5_4:57652266-57652285 | None:intergenic | 30.0% |
| ! | TCTGGTTCAAACATTGAACT+GGG | + | chr5_4:57647228-57647247 | None:intergenic | 35.0% |
| !! | TTCTGGTTCAAACATTGAAC+TGG | + | chr5_4:57647229-57647248 | None:intergenic | 35.0% |
| AGAGGTTATGTTGTGTACAA+AGG | + | chr5_4:57647346-57647365 | None:intergenic | 35.0% | |
| TGTACACAACATAACCTCTT+CGG | - | chr5_4:57647347-57647366 | Msa0859300:three_prime_UTR | 35.0% | |
| GATTCCATTGAAAAGGGTAA+TGG | + | chr5_4:57647425-57647444 | None:intergenic | 35.0% | |
| GAATCCTTGATTTCTCTCAA+GGG | - | chr5_4:57647440-57647459 | Msa0859300:three_prime_UTR | 35.0% | |
| !! | TAAGTATTGACTTGAGTTGG+AGG | + | chr5_4:57647515-57647534 | None:intergenic | 35.0% |
| !!! | CATTTTTCTTTTTGGGGTGT+TGG | - | chr5_4:57647653-57647672 | Msa0859300:intron | 35.0% |
| GAATGGTATATGCGTTCAAT+TGG | - | chr5_4:57647690-57647709 | Msa0859300:intron | 35.0% | |
| ! | ATTATGGTGGAGCATAATGA+AGG | - | chr5_4:57647801-57647820 | Msa0859300:intron | 35.0% |
| TCAACACAATTCACAAGATG+GGG | + | chr5_4:57647841-57647860 | None:intergenic | 35.0% | |
| ATTAAGGTGAAGCATGATGA+TGG | - | chr5_4:57647980-57647999 | Msa0859300:intron | 35.0% | |
| AAGCTCTCAAAGTTAAGGAA+TGG | - | chr5_4:57648200-57648219 | Msa0859300:intron | 35.0% | |
| AGCTCTCAAAGTTAAGGAAT+GGG | - | chr5_4:57648201-57648220 | Msa0859300:intron | 35.0% | |
| AAAGTTAAGGAATGGGAAGT+AGG | - | chr5_4:57648208-57648227 | Msa0859300:intron | 35.0% | |
| CTACCCAAGGTATAAGAATA+AGG | - | chr5_4:57648254-57648273 | Msa0859300:CDS | 35.0% | |
| AGGTCCTACATAATGATTAG+GGG | + | chr5_4:57648299-57648318 | None:intergenic | 35.0% | |
| ! | ATGTAGGACCTTTTCAATTC+CGG | - | chr5_4:57648308-57648327 | Msa0859300:intron | 35.0% |
| GAAAACTCCTTCTTATGGTT+AGG | - | chr5_4:57648501-57648520 | Msa0859300:intron | 35.0% | |
| ATTGATTGCTGAAGTCAAGA+AGG | - | chr5_4:57648604-57648623 | Msa0859300:intron | 35.0% | |
| ! | CATGTGGGAAATGTTTGTTT+TGG | - | chr5_4:57648722-57648741 | Msa0859300:intron | 35.0% |
| !! | AGTAGAGTGTTGTCAAATAG+TGG | - | chr5_4:57648843-57648862 | Msa0859300:CDS | 35.0% |
| CAATAACTAGTACAGGTTCA+TGG | - | chr5_4:57649358-57649377 | Msa0859300:intron | 35.0% | |
| TGATGCGATGCAAAAATACA+AGG | + | chr5_4:57649474-57649493 | None:intergenic | 35.0% | |
| GTGTTTGATAAGTTGCTTGA+AGG | + | chr5_4:57649507-57649526 | None:intergenic | 35.0% | |
| !!! | AAGTTGTTTTGGTGCAAAAC+TGG | - | chr5_4:57649615-57649634 | Msa0859300:intron | 35.0% |
| ! | TTCCTAAAAGTTCCCTCTTT+TGG | + | chr5_4:57649861-57649880 | None:intergenic | 35.0% |
| ! | GAAACACTTTTCATTCACCT+TGG | - | chr5_4:57649930-57649949 | Msa0859300:intron | 35.0% |
| TTTCTCTCTTGATTTCTCTC+AGG | - | chr5_4:57649986-57650005 | Msa0859300:intron | 35.0% | |
| GATTACAGGTAAGAGAATAG+AGG | + | chr5_4:57650199-57650218 | None:intergenic | 35.0% | |
| TGTTCCACACATCAAATTTG+TGG | - | chr5_4:57650310-57650329 | Msa0859300:intron | 35.0% | |
| !! | CATAATGGATTCTCTCTTAC+AGG | - | chr5_4:57650357-57650376 | Msa0859300:intron | 35.0% |
| !! | TCAGGGAAGCTTTGAAAATT+TGG | - | chr5_4:57650587-57650606 | Msa0859300:intron | 35.0% |
| CTTTATATAGACCATGCTGA+TGG | - | chr5_4:57650692-57650711 | Msa0859300:intron | 35.0% | |
| !!! | AGGGCACTGCATATTTTTTT+TGG | + | chr5_4:57650720-57650739 | None:intergenic | 35.0% |
| GATGTCAAGATCAGGTAAAA+CGG | + | chr5_4:57650828-57650847 | None:intergenic | 35.0% | |
| GATATGCAAATTACTTGGAC+TGG | - | chr5_4:57650862-57650881 | Msa0859300:intron | 35.0% | |
| TGTTTCCTGAATGTGAATGA+CGG | - | chr5_4:57650922-57650941 | Msa0859300:intron | 35.0% | |
| TGGTTCTCGTTTACAAAAGT+GGG | - | chr5_4:57651197-57651216 | Msa0859300:intron | 35.0% | |
| GGAATCAACAATCGTAATCT+TGG | - | chr5_4:57651380-57651399 | Msa0859300:intron | 35.0% | |
| !!! | TGTGGCTTCTATTTTTTGTG+TGG | - | chr5_4:57651467-57651486 | Msa0859300:CDS | 35.0% |
| TGGATATGTTTAGATGGTTG+GGG | - | chr5_4:57651651-57651670 | Msa0859300:intron | 35.0% | |
| TGTACATAAGCAATGTCTTC+AGG | + | chr5_4:57651694-57651713 | None:intergenic | 35.0% | |
| ATTGCTTATGTACAAGAAGC+AGG | - | chr5_4:57651700-57651719 | Msa0859300:intron | 35.0% | |
| ! | AACTCTCGTCAATTTTTCAC+AGG | - | chr5_4:57652052-57652071 | Msa0859300:intron | 35.0% |
| ! | CGTCAATTTTTCACAGGTTT+TGG | - | chr5_4:57652058-57652077 | Msa0859300:intron | 35.0% |
| !! | CAATTTTTCACAGGTTTTGG+TGG | - | chr5_4:57652061-57652080 | Msa0859300:intron | 35.0% |
| ATTGTGAAACAAAGTGATCC+TGG | - | chr5_4:57652092-57652111 | Msa0859300:CDS | 35.0% | |
| AAACAAAGTGATCCTGGAAA+GGG | - | chr5_4:57652098-57652117 | Msa0859300:CDS | 35.0% | |
| AAGGGAATTAGCAATCTCTT+TGG | - | chr5_4:57652116-57652135 | Msa0859300:CDS | 35.0% | |
| GTTCAAACATTGAACTGGGT+AGG | + | chr5_4:57647224-57647243 | None:intergenic | 40.0% | |
| GGAATCCTTGATTTCTCTCA+AGG | - | chr5_4:57647439-57647458 | Msa0859300:three_prime_UTR | 40.0% | |
| GTTACCCTTGAGAGAAATCA+AGG | + | chr5_4:57647447-57647466 | None:intergenic | 40.0% | |
| ATTGTAGCCGAACCTTCATT+AGG | + | chr5_4:57648154-57648173 | None:intergenic | 40.0% | |
| GGTTGAAGCTCTCAAAGTTA+AGG | - | chr5_4:57648195-57648214 | Msa0859300:intron | 40.0% | |
| GGTCCTACATAATGATTAGG+GGG | + | chr5_4:57648298-57648317 | None:intergenic | 40.0% | |
| TTCTGCAACCGGAATTGAAA+AGG | + | chr5_4:57648319-57648338 | None:intergenic | 40.0% | |
| AAATACACCGCGTAACATCT+TGG | - | chr5_4:57648345-57648364 | Msa0859300:intron | 40.0% | |
| ATCTCTTCCAAGATGTTACG+CGG | + | chr5_4:57648355-57648374 | None:intergenic | 40.0% | |
| ACATCTTGGAAGAGATTGTG+TGG | - | chr5_4:57648359-57648378 | Msa0859300:intron | 40.0% | |
| ACTCCTTCTTATGGTTAGGA+AGG | - | chr5_4:57648505-57648524 | Msa0859300:intron | 40.0% | |
| !! | AACAGGAGGTGCATTTTCAA+GGG | + | chr5_4:57648531-57648550 | None:intergenic | 40.0% |
| TTGAAAATGCACCTCCTGTT+CGG | - | chr5_4:57648531-57648550 | Msa0859300:intron | 40.0% | |
| ! | CTCCTGTTCGGGATTTTATT+GGG | - | chr5_4:57648543-57648562 | Msa0859300:intron | 40.0% |
| ! | TCCTGTTCGGGATTTTATTG+GGG | - | chr5_4:57648544-57648563 | Msa0859300:intron | 40.0% |
| !! | GGATTTTATTGGGGCTCTAA+GGG | - | chr5_4:57648553-57648572 | Msa0859300:intron | 40.0% |
| TAATGAACGAACTGGATTGC+CGG | - | chr5_4:57648580-57648599 | Msa0859300:intron | 40.0% | |
| TTGACTTCAGCAATCAATCC+CGG | + | chr5_4:57648602-57648621 | None:intergenic | 40.0% | |
| GATTTCCACTGTGATCTTTG+AGG | - | chr5_4:57648681-57648700 | Msa0859300:intron | 40.0% | |
| GATAACCTCAAAGATCACAG+TGG | + | chr5_4:57648689-57648708 | None:intergenic | 40.0% | |
| !!! | ATGTTTGTTTTGGCTCCAAC+TGG | - | chr5_4:57648732-57648751 | Msa0859300:intron | 40.0% |
| CTGAATCAGATATAGCCAGT+TGG | + | chr5_4:57648750-57648769 | None:intergenic | 40.0% | |
| ! | AATAACGGCTCTAGCACTAT+AGG | - | chr5_4:57648778-57648797 | Msa0859300:CDS | 40.0% |
| ! | ATAACGGCTCTAGCACTATA+GGG | - | chr5_4:57648779-57648798 | Msa0859300:CDS | 40.0% |
| TTGCTGATCACAGAAACTAG+CGG | + | chr5_4:57648914-57648933 | None:intergenic | 40.0% | |
| TAGACCCCTTTGAATCTCAT+TGG | - | chr5_4:57648943-57648962 | Msa0859300:intron | 40.0% | |
| TTGTGCTTGTCTAAGTCATG+TGG | + | chr5_4:57649257-57649276 | None:intergenic | 40.0% | |
| GATAAGTTGCTTGAAGGGTT+TGG | + | chr5_4:57649501-57649520 | None:intergenic | 40.0% | |
| ACACACAACAAGCAAAACAG+TGG | + | chr5_4:57649567-57649586 | None:intergenic | 40.0% | |
| ! | GACCAAAAGAGGGAACTTTT+AGG | - | chr5_4:57649856-57649875 | Msa0859300:intron | 40.0% |
| TTAGGAAACTTAAGAGGCCA+AGG | - | chr5_4:57649874-57649893 | Msa0859300:intron | 40.0% | |
| TAGGAAACTTAAGAGGCCAA+GGG | - | chr5_4:57649875-57649894 | Msa0859300:intron | 40.0% | |
| !! | TGCTTTTGGGTGAGATTCTT+GGG | - | chr5_4:57649903-57649922 | Msa0859300:intron | 40.0% |
| TTTCTCTCAGGATCTCATTG+TGG | - | chr5_4:57649998-57650017 | Msa0859300:intron | 40.0% | |
| TTCTCTCAGGATCTCATTGT+GGG | - | chr5_4:57649999-57650018 | Msa0859300:intron | 40.0% | |
| ! | TGGGTTGAACGACTTGAAAA+AGG | - | chr5_4:57650018-57650037 | Msa0859300:intron | 40.0% |
| GGGTTGAACGACTTGAAAAA+GGG | - | chr5_4:57650019-57650038 | Msa0859300:intron | 40.0% | |
| GGTTGAACGACTTGAAAAAG+GGG | - | chr5_4:57650020-57650039 | Msa0859300:intron | 40.0% | |
| ACAGTCTCAAGCAACAACAA+CGG | + | chr5_4:57650265-57650284 | None:intergenic | 40.0% | |
| ! | TGTTGTTGCTTGAGACTGTT+TGG | - | chr5_4:57650266-57650285 | Msa0859300:intron | 40.0% |
| GCTTGAGACTGTTTGGTTAT+TGG | - | chr5_4:57650273-57650292 | Msa0859300:intron | 40.0% | |
| CAGACCACAAATTTGATGTG+TGG | + | chr5_4:57650317-57650336 | None:intergenic | 40.0% | |
| CACACATCAAATTTGTGGTC+TGG | - | chr5_4:57650315-57650334 | Msa0859300:intron | 40.0% | |
| ! | CAAATTTGTGGTCTGGTTTG+AGG | - | chr5_4:57650322-57650341 | Msa0859300:intron | 40.0% |
| GCTCAATCTTATGAGAAAGG+TGG | - | chr5_4:57650388-57650407 | Msa0859300:intron | 40.0% | |
| !!! | TTTTTTTGGTGCCATCAGCA+TGG | + | chr5_4:57650706-57650725 | None:intergenic | 40.0% |
| TTGTAAACGAGAACCAGCTA+CGG | + | chr5_4:57651193-57651212 | None:intergenic | 40.0% | |
| ! | CTGGTTCTCGTTTACAAAAG+TGG | - | chr5_4:57651196-57651215 | Msa0859300:intron | 40.0% |
| GATCGTGTTCTTGGAATAGA+GGG | - | chr5_4:57651344-57651363 | Msa0859300:CDS | 40.0% | |
| TCATAAACACAACCACGATG+AGG | - | chr5_4:57651773-57651792 | Msa0859300:intron | 40.0% | |
| CATAAACTAAAGCCTCATCG+TGG | + | chr5_4:57651788-57651807 | None:intergenic | 40.0% | |
| GAAACAAAGTGATCCTGGAA+AGG | - | chr5_4:57652097-57652116 | Msa0859300:CDS | 40.0% | |
| AGATTGCTAATTCCCTTTCC+AGG | + | chr5_4:57652113-57652132 | None:intergenic | 40.0% | |
| TGGGATTGGAAGAGAACGAA+GGG | + | chr5_4:57647481-57647500 | None:intergenic | 45.0% | |
| !! | AGGAATAGTGGTTCTGGGAT+TGG | + | chr5_4:57647495-57647514 | None:intergenic | 45.0% |
| GTTGGAGGAATAGTGGTTCT+GGG | + | chr5_4:57647500-57647519 | None:intergenic | 45.0% | |
| AGTTGGAGGAATAGTGGTTC+TGG | + | chr5_4:57647501-57647520 | None:intergenic | 45.0% | |
| !! | GACTTGAGTTGGAGGAATAG+TGG | + | chr5_4:57647507-57647526 | None:intergenic | 45.0% |
| ! | TACGTTTTCAGTTCGAGCAC+AGG | - | chr5_4:57647553-57647572 | Msa0859300:intron | 45.0% |
| AACCACAGATTCACCAGATG+TGG | + | chr5_4:57648179-57648198 | None:intergenic | 45.0% | |
| ATAAGGAGAAGACCACCAAC+TGG | - | chr5_4:57648271-57648290 | Msa0859300:CDS | 45.0% | |
| TAATGATTAGGGGGTCCAGT+TGG | + | chr5_4:57648289-57648308 | None:intergenic | 45.0% | |
| GGACCCCCTAATCATTATGT+AGG | - | chr5_4:57648292-57648311 | Msa0859300:CDS | 45.0% | |
| TATTTCCCTCGTTCTGCAAC+CGG | + | chr5_4:57648330-57648349 | None:intergenic | 45.0% | |
| GGAAGAGATTGTGTGGAACA+AGG | - | chr5_4:57648366-57648385 | Msa0859300:intron | 45.0% | |
| !! | GAACAGGAGGTGCATTTTCA+AGG | + | chr5_4:57648532-57648551 | None:intergenic | 45.0% |
| TGAAAATGCACCTCCTGTTC+GGG | - | chr5_4:57648532-57648551 | Msa0859300:intron | 45.0% | |
| CCAATAAAATCCCGAACAGG+AGG | + | chr5_4:57648545-57648564 | None:intergenic | 45.0% | |
| ! | CCTCCTGTTCGGGATTTTAT+TGG | - | chr5_4:57648542-57648561 | Msa0859300:intron | 45.0% |
| ! | GGGATTTTATTGGGGCTCTA+AGG | - | chr5_4:57648552-57648571 | Msa0859300:intron | 45.0% |
| AATGAACGAACTGGATTGCC+GGG | - | chr5_4:57648581-57648600 | Msa0859300:intron | 45.0% | |
| AAGAAGGCTTCACCAAGTAG+AGG | - | chr5_4:57648620-57648639 | Msa0859300:intron | 45.0% | |
| TCTCTCAAGATGCCTCTACT+TGG | + | chr5_4:57648635-57648654 | None:intergenic | 45.0% | |
| GCTACAACACTGTAGCATAG+CGG | - | chr5_4:57648876-57648895 | Msa0859300:CDS | 45.0% | |
| CAAAACTGGTCATTTCCGCA+AGG | - | chr5_4:57649629-57649648 | Msa0859300:intron | 45.0% | |
| ! | GCCAAGGGTTAAGTGCTTTT+GGG | - | chr5_4:57649890-57649909 | Msa0859300:intron | 45.0% |
| !! | ACCCAAAAGCACTTAACCCT+TGG | + | chr5_4:57649894-57649913 | None:intergenic | 45.0% |
| !! | GTGCTTTTGGGTGAGATTCT+TGG | - | chr5_4:57649902-57649921 | Msa0859300:intron | 45.0% |
| TTTGGGTGAGATTCTTGGGT+TGG | - | chr5_4:57649907-57649926 | Msa0859300:intron | 45.0% | |
| TTGGGTGAGATTCTTGGGTT+GGG | - | chr5_4:57649908-57649927 | Msa0859300:intron | 45.0% | |
| ! | CACTTTTCATTCACCTTGGG+TGG | - | chr5_4:57649934-57649953 | Msa0859300:intron | 45.0% |
| TAATGAGATCTCACCACCCA+AGG | + | chr5_4:57649950-57649969 | None:intergenic | 45.0% | |
| GGTGGTGAGATCTCATTAGA+GGG | - | chr5_4:57649952-57649971 | Msa0859300:intron | 45.0% | |
| CCAATATGACCTACGTCTAG+GGG | + | chr5_4:57650142-57650161 | None:intergenic | 45.0% | |
| CCCAATATGACCTACGTCTA+GGG | + | chr5_4:57650143-57650162 | None:intergenic | 45.0% | |
| CCCTAGACGTAGGTCATATT+GGG | - | chr5_4:57650140-57650159 | Msa0859300:intron | 45.0% | |
| TAGGTCATATTGGGCCAAAC+TGG | - | chr5_4:57650149-57650168 | Msa0859300:intron | 45.0% | |
| AGGTCATATTGGGCCAAACT+GGG | - | chr5_4:57650150-57650169 | Msa0859300:intron | 45.0% | |
| CTCTACTATGCTCGATCCAA+AGG | - | chr5_4:57650776-57650795 | Msa0859300:intron | 45.0% | |
| GTAAAACGGCGGCAATTAGA+AGG | + | chr5_4:57650814-57650833 | None:intergenic | 45.0% | |
| GTCAAGATCAGGTAAAACGG+CGG | + | chr5_4:57650825-57650844 | None:intergenic | 45.0% | |
| TAATGTAGGTGCACGATGAG+AGG | - | chr5_4:57651315-57651334 | Msa0859300:CDS | 45.0% | |
| AATGTAGGTGCACGATGAGA+GGG | - | chr5_4:57651316-57651335 | Msa0859300:CDS | 45.0% | |
| AGGGAATTCGATCGTGTTCT+TGG | - | chr5_4:57651335-57651354 | Msa0859300:CDS | 45.0% | |
| CGATCGTGTTCTTGGAATAG+AGG | - | chr5_4:57651343-57651362 | Msa0859300:CDS | 45.0% | |
| ACCACGAAGAAGCTTCTTGA+AGG | - | chr5_4:57651519-57651538 | Msa0859300:intron | 45.0% | |
| TCCTTCAAGAAGCTTCTTCG+TGG | + | chr5_4:57651523-57651542 | None:intergenic | 45.0% | |
| GTTTAGATGGTTGGGGAATC+TGG | - | chr5_4:57651658-57651677 | Msa0859300:intron | 45.0% | |
| !! | ATAAATCTAAATTAAAATTA+CGG | + | chr5_4:57651874-57651893 | None:intergenic | 5.0% |
| CTGGGATTGGAAGAGAACGA+AGG | + | chr5_4:57647482-57647501 | None:intergenic | 50.0% | |
| GATTAGGCGGAGCCTAATGA+AGG | - | chr5_4:57648139-57648158 | Msa0859300:intron | 50.0% | |
| TCGGCTACAATAGCCACATC+TGG | - | chr5_4:57648163-57648182 | Msa0859300:intron | 50.0% | |
| AGCCACATCTGGTGAATCTG+TGG | - | chr5_4:57648174-57648193 | Msa0859300:intron | 50.0% | |
| AATGAGGTTGCTGCTACCCA+AGG | - | chr5_4:57648241-57648260 | Msa0859300:CDS | 50.0% | |
| TCAATTCCGGTTGCAGAACG+AGG | - | chr5_4:57648321-57648340 | Msa0859300:intron | 50.0% | |
| CAATTCCGGTTGCAGAACGA+GGG | - | chr5_4:57648322-57648341 | Msa0859300:intron | 50.0% | |
| GGGCCTTCCTAACCATAAGA+AGG | + | chr5_4:57648511-57648530 | None:intergenic | 50.0% | |
| GCCCCAATAAAATCCCGAAC+AGG | + | chr5_4:57648548-57648567 | None:intergenic | 50.0% | |
| AGGGCAGCTAATGAACGAAC+TGG | - | chr5_4:57648572-57648591 | Msa0859300:intron | 50.0% | |
| GCTCTAGCACTATAGGGTAG+TGG | - | chr5_4:57648785-57648804 | Msa0859300:CDS | 50.0% | |
| ! | TTTTCCCTGCCAAAACCGCA+AGG | - | chr5_4:57649702-57649721 | Msa0859300:intron | 50.0% |
| ! | GGCCAAGGGTTAAGTGCTTT+TGG | - | chr5_4:57649889-57649908 | Msa0859300:intron | 50.0% |
| GGGTGGTGAGATCTCATTAG+AGG | - | chr5_4:57649951-57649970 | Msa0859300:intron | 50.0% | |
| GGTGAGATCTCATTAGAGGG+AGG | - | chr5_4:57649955-57649974 | Msa0859300:intron | 50.0% | |
| CCCCTAGACGTAGGTCATAT+TGG | - | chr5_4:57650139-57650158 | Msa0859300:intron | 50.0% | |
| GCCCAATATGACCTACGTCT+AGG | + | chr5_4:57650144-57650163 | None:intergenic | 50.0% | |
| AAGGACTGCATCTGCACCTT+TGG | + | chr5_4:57650795-57650814 | None:intergenic | 50.0% | |
| TCCTGAATGTGAATGACGGC+CGG | - | chr5_4:57650926-57650945 | Msa0859300:intron | 50.0% | |
| TGTGATACCTACACCGTAGC+TGG | - | chr5_4:57651177-57651196 | Msa0859300:intron | 50.0% | |
| !! | ATAGAGGGCGTTGAGCTCAT+TGG | - | chr5_4:57651359-57651378 | Msa0859300:intron | 50.0% |
| AGGACCTGAGTCATCAACTG+TGG | - | chr5_4:57651449-57651468 | Msa0859300:intron | 50.0% | |
| !! | GAAGCCACAGTTGATGACTC+AGG | + | chr5_4:57651456-57651475 | None:intergenic | 50.0% |
| AAGCTTCTTGAAGGAGAGCG+AGG | - | chr5_4:57651528-57651547 | Msa0859300:intron | 50.0% | |
| GGCGGAGCCTAATGAAGGTT+CGG | - | chr5_4:57648144-57648163 | Msa0859300:intron | 55.0% | |
| TGATTAGGGGGTCCAGTTGG+TGG | + | chr5_4:57648286-57648305 | None:intergenic | 55.0% | |
| CAAGGACAAAGAAGTCGCGC+AGG | - | chr5_4:57648384-57648403 | Msa0859300:intron | 55.0% | |
| !! | TTTCCGCAAGGCGTTGACAG+AGG | - | chr5_4:57649641-57649660 | Msa0859300:intron | 55.0% |
| GAACCTCTGTCAACGCCTTG+CGG | + | chr5_4:57649647-57649666 | None:intergenic | 55.0% | |
| ! | AAGGCACCCAGTGGACCATT+GGG | - | chr5_4:57649742-57649761 | Msa0859300:intron | 55.0% |
| !! | TGGACTGGCAGCTCTTGTTG+AGG | - | chr5_4:57650877-57650896 | Msa0859300:intron | 55.0% |
| ACGAGAACCAGCTACGGTGT+AGG | + | chr5_4:57651187-57651206 | None:intergenic | 55.0% | |
| TCCCTGCCAAAACCGCAAGG+CGG | - | chr5_4:57649705-57649724 | Msa0859300:intron | 60.0% | |
| !! | ACCGCCTTGCGGTTTTGGCA+GGG | + | chr5_4:57649709-57649728 | None:intergenic | 60.0% |
| ! | GTGAGACCGCCTTGCGGTTT+TGG | + | chr5_4:57649714-57649733 | None:intergenic | 60.0% |
| AAACCGCAAGGCGGTCTCAC+TGG | - | chr5_4:57649714-57649733 | Msa0859300:intron | 60.0% | |
| AACCGCAAGGCGGTCTCACT+GGG | - | chr5_4:57649715-57649734 | Msa0859300:intron | 60.0% | |
| ! | CAAGGCACCCAGTGGACCAT+TGG | - | chr5_4:57649741-57649760 | Msa0859300:intron | 60.0% |
| ACCCAGTGGACCATTGGGCA+GGG | - | chr5_4:57649747-57649766 | Msa0859300:intron | 60.0% | |
| CTCCTCTCTCCCCTAGACGT+AGG | - | chr5_4:57650130-57650149 | Msa0859300:intron | 60.0% | |
| GACCTACGTCTAGGGGAGAG+AGG | + | chr5_4:57650135-57650154 | None:intergenic | 60.0% | |
| GCCGGCCGTCATTCACATTC+AGG | + | chr5_4:57650930-57650949 | None:intergenic | 60.0% | |
| GAATGTGAATGACGGCCGGC+TGG | - | chr5_4:57650930-57650949 | Msa0859300:intron | 60.0% | |
| !! | GACCGCCTTGCGGTTTTGGC+AGG | + | chr5_4:57649710-57649729 | None:intergenic | 65.0% |
| ACCGCAAGGCGGTCTCACTG+GGG | - | chr5_4:57649716-57649735 | Msa0859300:intron | 65.0% | |
| ACCCCAGTGAGACCGCCTTG+CGG | + | chr5_4:57649720-57649739 | None:intergenic | 65.0% | |
| CACCCAGTGGACCATTGGGC+AGG | - | chr5_4:57649746-57649765 | Msa0859300:intron | 65.0% | |
| CCCCTGCCCAATGGTCCACT+GGG | + | chr5_4:57649751-57649770 | None:intergenic | 65.0% | |
| CCCAGTGGACCATTGGGCAG+GGG | - | chr5_4:57649748-57649767 | Msa0859300:intron | 65.0% | |
| ACCCCTGCCCAATGGTCCAC+TGG | + | chr5_4:57649752-57649771 | None:intergenic | 65.0% | |
| ! | GACCATTGGGCAGGGGTGCA+AGG | - | chr5_4:57649755-57649774 | Msa0859300:intron | 65.0% |
| CACCTTGCACCCCTGCCCAA+TGG | + | chr5_4:57649760-57649779 | None:intergenic | 65.0% | |
| GGGTGCAAGGTGCAGGGACT+AGG | - | chr5_4:57649768-57649787 | Msa0859300:intron | 65.0% | |
| GGCGGTCTCACTGGGGTGCA+AGG | - | chr5_4:57649723-57649742 | Msa0859300:intron | 70.0% | |
| ! | CTGGGGTGCAAGGCACCCAG+TGG | - | chr5_4:57649733-57649752 | Msa0859300:intron | 70.0% |
| ! | TGGGCAGGGGTGCAAGGTGC+AGG | - | chr5_4:57649761-57649780 | Msa0859300:intron | 70.0% |
| ! | GGGCAGGGGTGCAAGGTGCA+GGG | - | chr5_4:57649762-57649781 | Msa0859300:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 57647215 | 57652421 | 57647215 | ID=Msa0859300;Name=Msa0859300 |
| chr5_4 | mRNA | 57647215 | 57652421 | 57647215 | ID=Msa0859300-mRNA-1;Parent=Msa0859300;Name=Msa0859300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=222|0.77|0.8|1|0.88|0.8|10|264|340 |
| chr5_4 | exon | 57647215 | 57647562 | 57647215 | ID=Msa0859300-mRNA-1:exon:17557;Parent=Msa0859300-mRNA-1 |
| chr5_4 | exon | 57647904 | 57647972 | 57647904 | ID=Msa0859300-mRNA-1:exon:17556;Parent=Msa0859300-mRNA-1 |
| chr5_4 | exon | 57648058 | 57648140 | 57648058 | ID=Msa0859300-mRNA-1:exon:17555;Parent=Msa0859300-mRNA-1 |
| chr5_4 | exon | 57648235 | 57648313 | 57648235 | ID=Msa0859300-mRNA-1:exon:17554;Parent=Msa0859300-mRNA-1 |
| chr5_4 | exon | 57648738 | 57648902 | 57648738 | ID=Msa0859300-mRNA-1:exon:17553;Parent=Msa0859300-mRNA-1 |
| chr5_4 | exon | 57649001 | 57649045 | 57649001 | ID=Msa0859300-mRNA-1:exon:17552;Parent=Msa0859300-mRNA-1 |
| chr5_4 | exon | 57650969 | 57651145 | 57650969 | ID=Msa0859300-mRNA-1:exon:17551;Parent=Msa0859300-mRNA-1 |
| chr5_4 | exon | 57651231 | 57651373 | 57651231 | ID=Msa0859300-mRNA-1:exon:17550;Parent=Msa0859300-mRNA-1 |
| chr5_4 | exon | 57651452 | 57651491 | 57651452 | ID=Msa0859300-mRNA-1:exon:17549;Parent=Msa0859300-mRNA-1 |
| chr5_4 | exon | 57652062 | 57652421 | 57652062 | ID=Msa0859300-mRNA-1:exon:17548;Parent=Msa0859300-mRNA-1 |
| chr5_4 | five_prime_UTR | 57652200 | 57652421 | 57652200 | ID=Msa0859300-mRNA-1:five_prime_utr;Parent=Msa0859300-mRNA-1 |
| chr5_4 | CDS | 57652062 | 57652199 | 57652062 | ID=Msa0859300-mRNA-1:cds;Parent=Msa0859300-mRNA-1 |
| chr5_4 | CDS | 57651452 | 57651491 | 57651452 | ID=Msa0859300-mRNA-1:cds;Parent=Msa0859300-mRNA-1 |
| chr5_4 | CDS | 57651231 | 57651373 | 57651231 | ID=Msa0859300-mRNA-1:cds;Parent=Msa0859300-mRNA-1 |
| chr5_4 | CDS | 57650969 | 57651145 | 57650969 | ID=Msa0859300-mRNA-1:cds;Parent=Msa0859300-mRNA-1 |
| chr5_4 | CDS | 57649001 | 57649045 | 57649001 | ID=Msa0859300-mRNA-1:cds;Parent=Msa0859300-mRNA-1 |
| chr5_4 | CDS | 57648738 | 57648902 | 57648738 | ID=Msa0859300-mRNA-1:cds;Parent=Msa0859300-mRNA-1 |
| chr5_4 | CDS | 57648235 | 57648313 | 57648235 | ID=Msa0859300-mRNA-1:cds;Parent=Msa0859300-mRNA-1 |
| chr5_4 | CDS | 57648058 | 57648140 | 57648058 | ID=Msa0859300-mRNA-1:cds;Parent=Msa0859300-mRNA-1 |
| chr5_4 | CDS | 57647904 | 57647972 | 57647904 | ID=Msa0859300-mRNA-1:cds;Parent=Msa0859300-mRNA-1 |
| chr5_4 | CDS | 57647479 | 57647562 | 57647479 | ID=Msa0859300-mRNA-1:cds;Parent=Msa0859300-mRNA-1 |
| chr5_4 | three_prime_UTR | 57647215 | 57647478 | 57647215 | ID=Msa0859300-mRNA-1:three_prime_utr;Parent=Msa0859300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
