AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183800 MtrunA17_Chr1g0210631 94.969 159 8 0 1 159 60 218 6.83e-110 311
Msa0183800 MtrunA17_Chr1g0210661 90.196 153 15 0 6 158 1 153 7.88e-101 286
Msa0183800 MtrunA17_Chr2g0321501 72.727 132 35 1 29 159 24 155 2.19e-67 201
Msa0183800 MtrunA17_Chr4g0026331 65.385 156 48 3 6 159 4 155 7.21e-66 197
Msa0183800 MtrunA17_Chr2g0277481 55.102 147 60 3 17 158 3 148 5.66e-50 157
Msa0183800 MtrunA17_Chr8g0380641 55.556 144 61 3 17 158 4 146 7.22e-50 157
Msa0183800 MtrunA17_Chr5g0394481 31.757 148 96 3 11 158 1 143 1.82e-19 79.7
Msa0183800 MtrunA17_Chr4g0054691 39.535 86 52 0 74 159 74 159 1.06e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183800 AT2G27510.1 60.000 155 56 3 11 159 1 155 2.73e-60 184
Msa0183800 AT1G60950.1 56.209 153 56 5 11 158 1 147 6.51e-50 157
Msa0183800 AT1G10960.1 58.915 129 47 3 35 158 20 147 6.27e-47 150
Msa0183800 AT5G10000.1 52.381 126 57 2 36 158 22 147 8.15e-40 132
Msa0183800 AT4G14890.1 44.554 101 53 3 58 158 47 144 7.59e-20 81.3
Msa0183800 AT1G32550.1 39.535 86 52 0 74 159 69 154 3.95e-18 77.4
Msa0183800 AT1G32550.2 37.255 102 45 3 74 159 69 167 8.37e-13 63.5

Find 40 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATCACAGTATCTGATTT+TGG 0.126493 1_4:-72795351 None:intergenic
TTCACAGATCTCAAACTTGA+TGG 0.324898 1_4:-72795030 None:intergenic
TTGTGCTGGCCAAGTGGTTA+CGG 0.329557 1_4:+72795248 Msa0183800:CDS
AAAGAAAGGAAACTTGTTAT+AGG 0.331567 1_4:+72795516 Msa0183800:three_prime_UTR
CCCTGATGACTCTTACATTC+TGG 0.354348 1_4:+72795164 Msa0183800:CDS
GCACCCGCTCTGCATGAATA+AGG 0.356204 1_4:-72795216 None:intergenic
GTTGCCAGTTGTTAATGATA+TGG 0.392583 1_4:+72795612 Msa0183800:three_prime_UTR
TGTGCTGGCCAAGTGGTTAC+GGG 0.411836 1_4:+72795249 Msa0183800:CDS
AAGAATGTGTCCAAAACATT+TGG 0.421132 1_4:+72795051 Msa0183800:CDS
AATTCGTTCTCTGTTCCATC+TGG 0.449513 1_4:-72795135 None:intergenic
TCCAGAATGTAAGAGTCATC+AGG 0.451621 1_4:-72795165 None:intergenic
TTGACTATGTGTCATGTAGC+TGG 0.452024 1_4:+72795439 Msa0183800:three_prime_UTR
CTTTCAACAGCTTCATTGTA+CGG 0.469663 1_4:+72794967 Msa0183800:CDS
CACACCATATCATTAACAAC+TGG 0.471108 1_4:-72795616 None:intergenic
CTGGATTCAGCTGAAGATGC+TGG 0.504908 1_4:+72795183 Msa0183800:CDS
GGTGCATGTTCTACTTGTGC+TGG 0.505031 1_4:+72795234 Msa0183800:CDS
GTATACAAAGTGAAACTGAT+TGG 0.509553 1_4:+72795111 Msa0183800:CDS
TAATGATATGGTGTGTAACT+TGG 0.510456 1_4:+72795624 Msa0183800:three_prime_UTR
CTACCTTATTCATGCAGAGC+GGG 0.513286 1_4:+72795213 Msa0183800:CDS
CGACAGAACCCGTAACCACT+TGG 0.534235 1_4:-72795257 None:intergenic
GTGAAACTGATTGGACCAGA+TGG 0.549003 1_4:+72795120 Msa0183800:CDS
TGTACGGAACAGTGCCCTCT+CGG 0.555453 1_4:+72794983 Msa0183800:CDS
CGATGAGCAGCAAATCGAGA+AGG 0.589494 1_4:+72795302 Msa0183800:CDS
CCAGAATGTAAGAGTCATCA+GGG 0.593554 1_4:-72795164 None:intergenic
TCTCACGGTGGACATATTCA+CGG 0.595716 1_4:-72794944 None:intergenic
ATCATTTAGAGTATCTGCAA+TGG 0.596293 1_4:+72795086 Msa0183800:CDS
TGGTTGTTGTGAAACTATGT+TGG 0.601901 1_4:+72795459 Msa0183800:three_prime_UTR
TTCTACTTGTGCTGGCCAAG+TGG 0.605670 1_4:+72795242 Msa0183800:CDS
TTCAGCTGAAGATGCTGGAG+TGG 0.623617 1_4:+72795188 Msa0183800:CDS
GATGAGCAGCAAATCGAGAA+GGG 0.629753 1_4:+72795303 Msa0183800:CDS
TACTGTGATTTACACACACA+AGG 0.647153 1_4:+72795362 Msa0183800:CDS
TCTCGATTTGCTGCTCATCG+AGG 0.652018 1_4:-72795299 None:intergenic
ACACATAGTCAAAACATGCA+CGG 0.652038 1_4:-72795428 None:intergenic
TGAAGCTGTTGAAAGTCTCA+CGG 0.659563 1_4:-72794959 None:intergenic
AGAGCACAAGATGTCCGAGA+GGG 0.687025 1_4:-72794997 None:intergenic
GCTACCTTATTCATGCAGAG+CGG 0.717700 1_4:+72795212 Msa0183800:CDS
TGTGATTTACACACACAAGG+AGG 0.721823 1_4:+72795365 Msa0183800:CDS
CAGAGCACAAGATGTCCGAG+AGG 0.730685 1_4:-72794998 None:intergenic
CAGAATGTAAGAGTCATCAG+GGG 0.754480 1_4:-72795163 None:intergenic
AGCTGTTGAAAGTCTCACGG+TGG 0.759008 1_4:-72794956 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTTTAATTGATTCAA+TGG + chr1_4:72793905-72793924 Msa0183800:intron 10.0%
!!! AATTGTAAAACATTTTTATA+AGG - chr1_4:72794271-72794290 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGGAA+TGG - chr1_4:72794764-72794783 None:intergenic 10.0%
!!! ACAAGTTTTTTTTTTTTTTT+TGG - chr1_4:72794769-72794788 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAACTTG+TGG + chr1_4:72794768-72794787 Msa0183800:intron 10.0%
!!! ATCTATATTTATTTTTATTC+AGG + chr1_4:72794907-72794926 Msa0183800:intron 10.0%
!!! AATTATTTTAATTGATTCAA+TGG + chr1_4:72793905-72793924 Msa0183800:intron 10.0%
!!! AATTGTAAAACATTTTTATA+AGG - chr1_4:72794271-72794290 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGGAA+TGG - chr1_4:72794764-72794783 None:intergenic 10.0%
!!! ACAAGTTTTTTTTTTTTTTT+TGG - chr1_4:72794769-72794788 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAACTTG+TGG + chr1_4:72794768-72794787 Msa0183800:intron 10.0%
!!! ATCTATATTTATTTTTATTC+AGG + chr1_4:72794907-72794926 Msa0183800:intron 10.0%
!! ATAAATATCATTATGATGAT+GGG + chr1_4:72794438-72794457 Msa0183800:intron 15.0%
!!! TTTTCTATAATTACTATTAC+TGG + chr1_4:72795550-72795569 Msa0183800:three_prime_UTR 15.0%
!! ATAAATATCATTATGATGAT+GGG + chr1_4:72794438-72794457 Msa0183800:intron 15.0%
!!! TTTTCTATAATTACTATTAC+TGG + chr1_4:72795550-72795569 Msa0183800:three_prime_UTR 15.0%
!! AATAACATAGGTTATAAACT+TGG - chr1_4:72793946-72793965 None:intergenic 20.0%
!!! TGGTGTTTTTTTGTTTTTTT+TGG + chr1_4:72794049-72794068 Msa0183800:intron 20.0%
!!! TGTAAAACATTTTTATAAGG+AGG - chr1_4:72794268-72794287 None:intergenic 20.0%
!! CATAAATATCATTATGATGA+TGG + chr1_4:72794437-72794456 Msa0183800:intron 20.0%
!! TATATAAATAACCTCCAAAA+CGG - chr1_4:72794731-72794750 None:intergenic 20.0%
!!! TCATTTTAGGAAATAAAGAA+AGG + chr1_4:72795502-72795521 Msa0183800:three_prime_UTR 20.0%
!! AATAACATAGGTTATAAACT+TGG - chr1_4:72793946-72793965 None:intergenic 20.0%
!!! TGGTGTTTTTTTGTTTTTTT+TGG + chr1_4:72794049-72794068 Msa0183800:intron 20.0%
!!! TGTAAAACATTTTTATAAGG+AGG - chr1_4:72794268-72794287 None:intergenic 20.0%
!! CATAAATATCATTATGATGA+TGG + chr1_4:72794437-72794456 Msa0183800:intron 20.0%
!! TATATAAATAACCTCCAAAA+CGG - chr1_4:72794731-72794750 None:intergenic 20.0%
!!! TCATTTTAGGAAATAAAGAA+AGG + chr1_4:72795502-72795521 Msa0183800:three_prime_UTR 20.0%
! GTGAATCAATCATTTGATTA+TGG + chr1_4:72793552-72793571 Msa0183800:intron 25.0%
! TCATTTGATTATGGAAATGA+TGG + chr1_4:72793561-72793580 Msa0183800:intron 25.0%
!!! TCGTCGTAGTTTTTTATATA+AGG + chr1_4:72793596-72793615 Msa0183800:intron 25.0%
! TAGAAAAAGAGATAAGACAA+TGG + chr1_4:72793709-72793728 Msa0183800:intron 25.0%
! ATGAGAGAATGAAATAACAT+AGG - chr1_4:72793958-72793977 None:intergenic 25.0%
! GTAAAAATACAGTATAGCTA+AGG - chr1_4:72794122-72794141 None:intergenic 25.0%
! AATCAGATAAGTACCAAATA+CGG - chr1_4:72794146-72794165 None:intergenic 25.0%
! TGTATCTTATTAACAATCAC+TGG - chr1_4:72794169-72794188 None:intergenic 25.0%
!!! AACTTTTTTGTCAACTTCTA+CGG - chr1_4:72794294-72794313 None:intergenic 25.0%
! GTTAATACTTAAAGCTAAGT+AGG + chr1_4:72794311-72794330 Msa0183800:intron 25.0%
! AAAGGCAATTTAAAGAATCA+AGG - chr1_4:72794499-72794518 None:intergenic 25.0%
! AAAGAAATCATGTGTATCAA+AGG - chr1_4:72794517-72794536 None:intergenic 25.0%
!!! TCTATTCTTGTGTTTTGTTA+TGG + chr1_4:72794552-72794571 Msa0183800:intron 25.0%
! ATCAAAAGAAAAACTTGTGT+AGG + chr1_4:72794595-72794614 Msa0183800:intron 25.0%
!! TTTTATCCTCTATGTGTATT+TGG + chr1_4:72794630-72794649 Msa0183800:intron 25.0%
! TAAAAACCAAATACACATAG+AGG - chr1_4:72794639-72794658 None:intergenic 25.0%
! AATTTCTTGTAAGAACTTTC+AGG + chr1_4:72794796-72794815 Msa0183800:intron 25.0%
! ATTTCTTGTAAGAACTTTCA+GGG + chr1_4:72794797-72794816 Msa0183800:intron 25.0%
!!! AGATTTTAGTCCAAATGTTT+TGG - chr1_4:72795064-72795083 None:intergenic 25.0%
!! AAATCACAGTATCTGATTTT+GGG - chr1_4:72795353-72795372 None:intergenic 25.0%
!! TAAATCACAGTATCTGATTT+TGG - chr1_4:72795354-72795373 None:intergenic 25.0%
!! GTAACTTACTGAATCATTTT+AGG + chr1_4:72795489-72795508 Msa0183800:three_prime_UTR 25.0%
!!! AAAGAAAGGAAACTTGTTAT+AGG + chr1_4:72795516-72795535 Msa0183800:three_prime_UTR 25.0%
! GTGAATCAATCATTTGATTA+TGG + chr1_4:72793552-72793571 Msa0183800:intron 25.0%
! TCATTTGATTATGGAAATGA+TGG + chr1_4:72793561-72793580 Msa0183800:intron 25.0%
!!! TCGTCGTAGTTTTTTATATA+AGG + chr1_4:72793596-72793615 Msa0183800:intron 25.0%
! TAGAAAAAGAGATAAGACAA+TGG + chr1_4:72793709-72793728 Msa0183800:intron 25.0%
! ATGAGAGAATGAAATAACAT+AGG - chr1_4:72793958-72793977 None:intergenic 25.0%
! GTAAAAATACAGTATAGCTA+AGG - chr1_4:72794122-72794141 None:intergenic 25.0%
! AATCAGATAAGTACCAAATA+CGG - chr1_4:72794146-72794165 None:intergenic 25.0%
! TGTATCTTATTAACAATCAC+TGG - chr1_4:72794169-72794188 None:intergenic 25.0%
!!! AACTTTTTTGTCAACTTCTA+CGG - chr1_4:72794294-72794313 None:intergenic 25.0%
! GTTAATACTTAAAGCTAAGT+AGG + chr1_4:72794311-72794330 Msa0183800:intron 25.0%
! AAAGGCAATTTAAAGAATCA+AGG - chr1_4:72794499-72794518 None:intergenic 25.0%
! AAAGAAATCATGTGTATCAA+AGG - chr1_4:72794517-72794536 None:intergenic 25.0%
!!! TCTATTCTTGTGTTTTGTTA+TGG + chr1_4:72794552-72794571 Msa0183800:intron 25.0%
! ATCAAAAGAAAAACTTGTGT+AGG + chr1_4:72794595-72794614 Msa0183800:intron 25.0%
!! TTTTATCCTCTATGTGTATT+TGG + chr1_4:72794630-72794649 Msa0183800:intron 25.0%
! TAAAAACCAAATACACATAG+AGG - chr1_4:72794639-72794658 None:intergenic 25.0%
! AATTTCTTGTAAGAACTTTC+AGG + chr1_4:72794796-72794815 Msa0183800:intron 25.0%
! ATTTCTTGTAAGAACTTTCA+GGG + chr1_4:72794797-72794816 Msa0183800:intron 25.0%
!!! AGATTTTAGTCCAAATGTTT+TGG - chr1_4:72795064-72795083 None:intergenic 25.0%
!! AAATCACAGTATCTGATTTT+GGG - chr1_4:72795353-72795372 None:intergenic 25.0%
!! TAAATCACAGTATCTGATTT+TGG - chr1_4:72795354-72795373 None:intergenic 25.0%
!! GTAACTTACTGAATCATTTT+AGG + chr1_4:72795489-72795508 Msa0183800:three_prime_UTR 25.0%
!!! AAAGAAAGGAAACTTGTTAT+AGG + chr1_4:72795516-72795535 Msa0183800:three_prime_UTR 25.0%
AAGATAAAAGGGAAATGGAA+AGG - chr1_4:72793652-72793671 None:intergenic 30.0%
! TAATTGATTCAATGGTACAC+TGG + chr1_4:72793913-72793932 Msa0183800:intron 30.0%
TATTTCATTCTCTCATCCTA+TGG + chr1_4:72793962-72793981 Msa0183800:intron 30.0%
!!! CTATGGTACTTTTTTTGACT+GGG + chr1_4:72793979-72793998 Msa0183800:intron 30.0%
!!! TATGGTACTTTTTTTGACTG+GGG + chr1_4:72793980-72793999 Msa0183800:intron 30.0%
!! CTGTATTTTTACACCGTATT+TGG + chr1_4:72794130-72794149 Msa0183800:intron 30.0%
TTTATCCACTTCAGGAATTA+GGG - chr1_4:72794212-72794231 None:intergenic 30.0%
! TTTTATCCACTTCAGGAATT+AGG - chr1_4:72794213-72794232 None:intergenic 30.0%
TAATTCCTGAAGTGGATAAA+AGG + chr1_4:72794212-72794231 Msa0183800:intron 30.0%
AATTCCTGAAGTGGATAAAA+GGG + chr1_4:72794213-72794232 Msa0183800:intron 30.0%
TTTCTTGTAAGAACTTTCAG+GGG + chr1_4:72794798-72794817 Msa0183800:intron 30.0%
AAGAATGTGTCCAAAACATT+TGG + chr1_4:72795051-72795070 Msa0183800:CDS 30.0%
! ATCATTTAGAGTATCTGCAA+TGG + chr1_4:72795086-72795105 Msa0183800:CDS 30.0%
GTATACAAAGTGAAACTGAT+TGG + chr1_4:72795111-72795130 Msa0183800:CDS 30.0%
TAATGATATGGTGTGTAACT+TGG + chr1_4:72795624-72795643 Msa0183800:three_prime_UTR 30.0%
! AATGATTGATTCACTTTCCA+TGG - chr1_4:72793546-72793565 None:intergenic 30.0%
AAGATAAAAGGGAAATGGAA+AGG - chr1_4:72793652-72793671 None:intergenic 30.0%
! TAATTGATTCAATGGTACAC+TGG + chr1_4:72793913-72793932 Msa0183800:intron 30.0%
TATTTCATTCTCTCATCCTA+TGG + chr1_4:72793962-72793981 Msa0183800:intron 30.0%
!!! CTATGGTACTTTTTTTGACT+GGG + chr1_4:72793979-72793998 Msa0183800:intron 30.0%
!!! TATGGTACTTTTTTTGACTG+GGG + chr1_4:72793980-72793999 Msa0183800:intron 30.0%
!! CTGTATTTTTACACCGTATT+TGG + chr1_4:72794130-72794149 Msa0183800:intron 30.0%
TTTATCCACTTCAGGAATTA+GGG - chr1_4:72794212-72794231 None:intergenic 30.0%
! TTTTATCCACTTCAGGAATT+AGG - chr1_4:72794213-72794232 None:intergenic 30.0%
TAATTCCTGAAGTGGATAAA+AGG + chr1_4:72794212-72794231 Msa0183800:intron 30.0%
AATTCCTGAAGTGGATAAAA+GGG + chr1_4:72794213-72794232 Msa0183800:intron 30.0%
TTTCTTGTAAGAACTTTCAG+GGG + chr1_4:72794798-72794817 Msa0183800:intron 30.0%
AAGAATGTGTCCAAAACATT+TGG + chr1_4:72795051-72795070 Msa0183800:CDS 30.0%
! ATCATTTAGAGTATCTGCAA+TGG + chr1_4:72795086-72795105 Msa0183800:CDS 30.0%
GTATACAAAGTGAAACTGAT+TGG + chr1_4:72795111-72795130 Msa0183800:CDS 30.0%
TAATGATATGGTGTGTAACT+TGG + chr1_4:72795624-72795643 Msa0183800:three_prime_UTR 30.0%
CAGTGAAGATAAAAGGGAAA+TGG - chr1_4:72793657-72793676 None:intergenic 35.0%
ACCTCACAGTGAAGATAAAA+GGG - chr1_4:72793663-72793682 None:intergenic 35.0%
AACCTCACAGTGAAGATAAA+AGG - chr1_4:72793664-72793683 None:intergenic 35.0%
AAGACAATGGCGTAAATTGA+AGG + chr1_4:72793722-72793741 Msa0183800:intron 35.0%
AATGGCGTAAATTGAAGGTA+AGG + chr1_4:72793727-72793746 Msa0183800:intron 35.0%
AGAACAAGGATGGTTTAGTA+GGG + chr1_4:72793804-72793823 Msa0183800:intron 35.0%
!! CCAGTCAAAAAAAGTACCAT+AGG - chr1_4:72793981-72794000 None:intergenic 35.0%
!!! CCTATGGTACTTTTTTTGAC+TGG + chr1_4:72793978-72793997 Msa0183800:intron 35.0%
! ATGTATTTTACCGATACTGC+TGG + chr1_4:72794029-72794048 Msa0183800:intron 35.0%
CAAAAAAACACCAGCAGTAT+CGG - chr1_4:72794042-72794061 None:intergenic 35.0%
AAGATACAACTTCTGACAAC+CGG + chr1_4:72794181-72794200 Msa0183800:intron 35.0%
! TTTTCCCTTTTATCCACTTC+AGG - chr1_4:72794220-72794239 None:intergenic 35.0%
!! TTCTTGTGTTTTGTTATGGC+TGG + chr1_4:72794556-72794575 Msa0183800:intron 35.0%
! TATGGCTGGATTTGCTTATT+TGG + chr1_4:72794570-72794589 Msa0183800:intron 35.0%
! ATGGCTGGATTTGCTTATTT+GGG + chr1_4:72794571-72794590 Msa0183800:intron 35.0%
GAAAAACTTGTGTAGGATTG+TGG + chr1_4:72794602-72794621 Msa0183800:intron 35.0%
TAAATAACCTCCAAAACGGA+TGG - chr1_4:72794727-72794746 None:intergenic 35.0%
CTTTCAACAGCTTCATTGTA+CGG + chr1_4:72794967-72794986 Msa0183800:CDS 35.0%
TTCACAGATCTCAAACTTGA+TGG - chr1_4:72795033-72795052 None:intergenic 35.0%
TACTGTGATTTACACACACA+AGG + chr1_4:72795362-72795381 Msa0183800:CDS 35.0%
ACACATAGTCAAAACATGCA+CGG - chr1_4:72795431-72795450 None:intergenic 35.0%
TGGTTGTTGTGAAACTATGT+TGG + chr1_4:72795459-72795478 Msa0183800:three_prime_UTR 35.0%
GTTGCCAGTTGTTAATGATA+TGG + chr1_4:72795612-72795631 Msa0183800:three_prime_UTR 35.0%
CACACCATATCATTAACAAC+TGG - chr1_4:72795619-72795638 None:intergenic 35.0%
CAGTGAAGATAAAAGGGAAA+TGG - chr1_4:72793657-72793676 None:intergenic 35.0%
ACCTCACAGTGAAGATAAAA+GGG - chr1_4:72793663-72793682 None:intergenic 35.0%
AACCTCACAGTGAAGATAAA+AGG - chr1_4:72793664-72793683 None:intergenic 35.0%
AAGACAATGGCGTAAATTGA+AGG + chr1_4:72793722-72793741 Msa0183800:intron 35.0%
AATGGCGTAAATTGAAGGTA+AGG + chr1_4:72793727-72793746 Msa0183800:intron 35.0%
AGAACAAGGATGGTTTAGTA+GGG + chr1_4:72793804-72793823 Msa0183800:intron 35.0%
!! CCAGTCAAAAAAAGTACCAT+AGG - chr1_4:72793981-72794000 None:intergenic 35.0%
!!! CCTATGGTACTTTTTTTGAC+TGG + chr1_4:72793978-72793997 Msa0183800:intron 35.0%
! ATGTATTTTACCGATACTGC+TGG + chr1_4:72794029-72794048 Msa0183800:intron 35.0%
CAAAAAAACACCAGCAGTAT+CGG - chr1_4:72794042-72794061 None:intergenic 35.0%
AAGATACAACTTCTGACAAC+CGG + chr1_4:72794181-72794200 Msa0183800:intron 35.0%
! TTTTCCCTTTTATCCACTTC+AGG - chr1_4:72794220-72794239 None:intergenic 35.0%
!! TTCTTGTGTTTTGTTATGGC+TGG + chr1_4:72794556-72794575 Msa0183800:intron 35.0%
! TATGGCTGGATTTGCTTATT+TGG + chr1_4:72794570-72794589 Msa0183800:intron 35.0%
! ATGGCTGGATTTGCTTATTT+GGG + chr1_4:72794571-72794590 Msa0183800:intron 35.0%
GAAAAACTTGTGTAGGATTG+TGG + chr1_4:72794602-72794621 Msa0183800:intron 35.0%
TAAATAACCTCCAAAACGGA+TGG - chr1_4:72794727-72794746 None:intergenic 35.0%
CTTTCAACAGCTTCATTGTA+CGG + chr1_4:72794967-72794986 Msa0183800:CDS 35.0%
TTCACAGATCTCAAACTTGA+TGG - chr1_4:72795033-72795052 None:intergenic 35.0%
TACTGTGATTTACACACACA+AGG + chr1_4:72795362-72795381 Msa0183800:CDS 35.0%
ACACATAGTCAAAACATGCA+CGG - chr1_4:72795431-72795450 None:intergenic 35.0%
TGGTTGTTGTGAAACTATGT+TGG + chr1_4:72795459-72795478 Msa0183800:three_prime_UTR 35.0%
GTTGCCAGTTGTTAATGATA+TGG + chr1_4:72795612-72795631 Msa0183800:three_prime_UTR 35.0%
CACACCATATCATTAACAAC+TGG - chr1_4:72795619-72795638 None:intergenic 35.0%
! TCCCTTTTATCTTCACTGTG+AGG + chr1_4:72793659-72793678 Msa0183800:intron 40.0%
ATCTTCACTGTGAGGTTTGT+AGG + chr1_4:72793667-72793686 Msa0183800:intron 40.0%
TCTTCACTGTGAGGTTTGTA+GGG + chr1_4:72793668-72793687 Msa0183800:intron 40.0%
CAAGTGGTTCATAGAGAACA+AGG + chr1_4:72793790-72793809 Msa0183800:intron 40.0%
TGGTTCATAGAGAACAAGGA+TGG + chr1_4:72793794-72793813 Msa0183800:intron 40.0%
GAGAACAAGGATGGTTTAGT+AGG + chr1_4:72793803-72793822 Msa0183800:intron 40.0%
GAACAAGGATGGTTTAGTAG+GGG + chr1_4:72793805-72793824 Msa0183800:intron 40.0%
AGTAGGGGAAGAGATAAACA+AGG + chr1_4:72793820-72793839 Msa0183800:intron 40.0%
AGAGATAAACAAGGAGGGAT+TGG + chr1_4:72793829-72793848 Msa0183800:intron 40.0%
GAGATAAACAAGGAGGGATT+GGG + chr1_4:72793830-72793849 Msa0183800:intron 40.0%
ATTCAATGGTACACTGGTGA+GGG + chr1_4:72793919-72793938 Msa0183800:intron 40.0%
AGTGATGCAAAGAAAACCTG+AGG + chr1_4:72794337-72794356 Msa0183800:intron 40.0%
GTGATGCAAAGAAAACCTGA+GGG + chr1_4:72794338-72794357 Msa0183800:intron 40.0%
CATGCACAATGACTTACAAG+TGG - chr1_4:72794464-72794483 None:intergenic 40.0%
! TGGCTGGATTTGCTTATTTG+GGG + chr1_4:72794572-72794591 Msa0183800:intron 40.0%
! GTACTTGATTCCATCCGTTT+TGG + chr1_4:72794714-72794733 Msa0183800:intron 40.0%
TGAAGCTGTTGAAAGTCTCA+CGG - chr1_4:72794962-72794981 None:intergenic 40.0%
AATTCGTTCTCTGTTCCATC+TGG - chr1_4:72795138-72795157 None:intergenic 40.0%
CAGAATGTAAGAGTCATCAG+GGG - chr1_4:72795166-72795185 None:intergenic 40.0%
CCAGAATGTAAGAGTCATCA+GGG - chr1_4:72795167-72795186 None:intergenic 40.0%
TCCAGAATGTAAGAGTCATC+AGG - chr1_4:72795168-72795187 None:intergenic 40.0%
TGTGATTTACACACACAAGG+AGG + chr1_4:72795365-72795384 Msa0183800:CDS 40.0%
TTGACTATGTGTCATGTAGC+TGG + chr1_4:72795439-72795458 Msa0183800:three_prime_UTR 40.0%
! TCCCTTTTATCTTCACTGTG+AGG + chr1_4:72793659-72793678 Msa0183800:intron 40.0%
ATCTTCACTGTGAGGTTTGT+AGG + chr1_4:72793667-72793686 Msa0183800:intron 40.0%
TCTTCACTGTGAGGTTTGTA+GGG + chr1_4:72793668-72793687 Msa0183800:intron 40.0%
CAAGTGGTTCATAGAGAACA+AGG + chr1_4:72793790-72793809 Msa0183800:intron 40.0%
TGGTTCATAGAGAACAAGGA+TGG + chr1_4:72793794-72793813 Msa0183800:intron 40.0%
GAGAACAAGGATGGTTTAGT+AGG + chr1_4:72793803-72793822 Msa0183800:intron 40.0%
GAACAAGGATGGTTTAGTAG+GGG + chr1_4:72793805-72793824 Msa0183800:intron 40.0%
AGTAGGGGAAGAGATAAACA+AGG + chr1_4:72793820-72793839 Msa0183800:intron 40.0%
AGAGATAAACAAGGAGGGAT+TGG + chr1_4:72793829-72793848 Msa0183800:intron 40.0%
GAGATAAACAAGGAGGGATT+GGG + chr1_4:72793830-72793849 Msa0183800:intron 40.0%
ATTCAATGGTACACTGGTGA+GGG + chr1_4:72793919-72793938 Msa0183800:intron 40.0%
AGTGATGCAAAGAAAACCTG+AGG + chr1_4:72794337-72794356 Msa0183800:intron 40.0%
GTGATGCAAAGAAAACCTGA+GGG + chr1_4:72794338-72794357 Msa0183800:intron 40.0%
CATGCACAATGACTTACAAG+TGG - chr1_4:72794464-72794483 None:intergenic 40.0%
! TGGCTGGATTTGCTTATTTG+GGG + chr1_4:72794572-72794591 Msa0183800:intron 40.0%
! GTACTTGATTCCATCCGTTT+TGG + chr1_4:72794714-72794733 Msa0183800:intron 40.0%
TGAAGCTGTTGAAAGTCTCA+CGG - chr1_4:72794962-72794981 None:intergenic 40.0%
AATTCGTTCTCTGTTCCATC+TGG - chr1_4:72795138-72795157 None:intergenic 40.0%
CAGAATGTAAGAGTCATCAG+GGG - chr1_4:72795166-72795185 None:intergenic 40.0%
CCAGAATGTAAGAGTCATCA+GGG - chr1_4:72795167-72795186 None:intergenic 40.0%
TCCAGAATGTAAGAGTCATC+AGG - chr1_4:72795168-72795187 None:intergenic 40.0%
TGTGATTTACACACACAAGG+AGG + chr1_4:72795365-72795384 Msa0183800:CDS 40.0%
TTGACTATGTGTCATGTAGC+TGG + chr1_4:72795439-72795458 Msa0183800:three_prime_UTR 40.0%
AGACATGTTGAGTCTGCAAG+TGG + chr1_4:72793774-72793793 Msa0183800:intron 45.0%
AGGGGAAGAGATAAACAAGG+AGG + chr1_4:72793823-72793842 Msa0183800:intron 45.0%
GGGGAAGAGATAAACAAGGA+GGG + chr1_4:72793824-72793843 Msa0183800:intron 45.0%
GATTCAATGGTACACTGGTG+AGG + chr1_4:72793918-72793937 Msa0183800:intron 45.0%
!! TTTTGACTGGGGTAGAAGAG+TGG + chr1_4:72793991-72794010 Msa0183800:intron 45.0%
TTCAGGAATTAGGGTGACTC+CGG - chr1_4:72794203-72794222 None:intergenic 45.0%
AGTCACCCTAATTCCTGAAG+TGG + chr1_4:72794204-72794223 Msa0183800:intron 45.0%
CTAAGCAATTTCGTACCCTC+AGG - chr1_4:72794356-72794375 None:intergenic 45.0%
! CTGAGGGTACGAAATTGCTT+AGG + chr1_4:72794354-72794373 Msa0183800:intron 45.0%
GTACAACATCCTTGAGCACA+AGG - chr1_4:72794698-72794717 None:intergenic 45.0%
! CTTGATTCCATCCGTTTTGG+AGG + chr1_4:72794717-72794736 Msa0183800:intron 45.0%
TCTCACGGTGGACATATTCA+CGG - chr1_4:72794947-72794966 None:intergenic 45.0%
GTGAAACTGATTGGACCAGA+TGG + chr1_4:72795120-72795139 Msa0183800:CDS 45.0%
CCCTGATGACTCTTACATTC+TGG + chr1_4:72795164-72795183 Msa0183800:CDS 45.0%
GCTACCTTATTCATGCAGAG+CGG + chr1_4:72795212-72795231 Msa0183800:CDS 45.0%
CTACCTTATTCATGCAGAGC+GGG + chr1_4:72795213-72795232 Msa0183800:CDS 45.0%
GATGAGCAGCAAATCGAGAA+GGG + chr1_4:72795303-72795322 Msa0183800:CDS 45.0%
AGACATGTTGAGTCTGCAAG+TGG + chr1_4:72793774-72793793 Msa0183800:intron 45.0%
AGGGGAAGAGATAAACAAGG+AGG + chr1_4:72793823-72793842 Msa0183800:intron 45.0%
GGGGAAGAGATAAACAAGGA+GGG + chr1_4:72793824-72793843 Msa0183800:intron 45.0%
GATTCAATGGTACACTGGTG+AGG + chr1_4:72793918-72793937 Msa0183800:intron 45.0%
!! TTTTGACTGGGGTAGAAGAG+TGG + chr1_4:72793991-72794010 Msa0183800:intron 45.0%
TTCAGGAATTAGGGTGACTC+CGG - chr1_4:72794203-72794222 None:intergenic 45.0%
AGTCACCCTAATTCCTGAAG+TGG + chr1_4:72794204-72794223 Msa0183800:intron 45.0%
CTAAGCAATTTCGTACCCTC+AGG - chr1_4:72794356-72794375 None:intergenic 45.0%
! CTGAGGGTACGAAATTGCTT+AGG + chr1_4:72794354-72794373 Msa0183800:intron 45.0%
GTACAACATCCTTGAGCACA+AGG - chr1_4:72794698-72794717 None:intergenic 45.0%
! CTTGATTCCATCCGTTTTGG+AGG + chr1_4:72794717-72794736 Msa0183800:intron 45.0%
TCTCACGGTGGACATATTCA+CGG - chr1_4:72794947-72794966 None:intergenic 45.0%
GTGAAACTGATTGGACCAGA+TGG + chr1_4:72795120-72795139 Msa0183800:CDS 45.0%
CCCTGATGACTCTTACATTC+TGG + chr1_4:72795164-72795183 Msa0183800:CDS 45.0%
GCTACCTTATTCATGCAGAG+CGG + chr1_4:72795212-72795231 Msa0183800:CDS 45.0%
CTACCTTATTCATGCAGAGC+GGG + chr1_4:72795213-72795232 Msa0183800:CDS 45.0%
GATGAGCAGCAAATCGAGAA+GGG + chr1_4:72795303-72795322 Msa0183800:CDS 45.0%
AACAAGGAGGGATTGGGTGA+AGG + chr1_4:72793836-72793855 Msa0183800:intron 50.0%
TCGAGTACTCCTTGTGCTCA+AGG + chr1_4:72794686-72794705 Msa0183800:intron 50.0%
AGCTGTTGAAAGTCTCACGG+TGG - chr1_4:72794959-72794978 None:intergenic 50.0%
AGAGCACAAGATGTCCGAGA+GGG - chr1_4:72795000-72795019 None:intergenic 50.0%
CTGGATTCAGCTGAAGATGC+TGG + chr1_4:72795183-72795202 Msa0183800:CDS 50.0%
TTCAGCTGAAGATGCTGGAG+TGG + chr1_4:72795188-72795207 Msa0183800:CDS 50.0%
GGTGCATGTTCTACTTGTGC+TGG + chr1_4:72795234-72795253 Msa0183800:CDS 50.0%
! TTCTACTTGTGCTGGCCAAG+TGG + chr1_4:72795242-72795261 Msa0183800:CDS 50.0%
! TTGTGCTGGCCAAGTGGTTA+CGG + chr1_4:72795248-72795267 Msa0183800:CDS 50.0%
!! TCTCGATTTGCTGCTCATCG+AGG - chr1_4:72795302-72795321 None:intergenic 50.0%
CGATGAGCAGCAAATCGAGA+AGG + chr1_4:72795302-72795321 Msa0183800:CDS 50.0%
AACAAGGAGGGATTGGGTGA+AGG + chr1_4:72793836-72793855 Msa0183800:intron 50.0%
TCGAGTACTCCTTGTGCTCA+AGG + chr1_4:72794686-72794705 Msa0183800:intron 50.0%
AGCTGTTGAAAGTCTCACGG+TGG - chr1_4:72794959-72794978 None:intergenic 50.0%
AGAGCACAAGATGTCCGAGA+GGG - chr1_4:72795000-72795019 None:intergenic 50.0%
CTGGATTCAGCTGAAGATGC+TGG + chr1_4:72795183-72795202 Msa0183800:CDS 50.0%
TTCAGCTGAAGATGCTGGAG+TGG + chr1_4:72795188-72795207 Msa0183800:CDS 50.0%
GGTGCATGTTCTACTTGTGC+TGG + chr1_4:72795234-72795253 Msa0183800:CDS 50.0%
! TTCTACTTGTGCTGGCCAAG+TGG + chr1_4:72795242-72795261 Msa0183800:CDS 50.0%
! TTGTGCTGGCCAAGTGGTTA+CGG + chr1_4:72795248-72795267 Msa0183800:CDS 50.0%
!! TCTCGATTTGCTGCTCATCG+AGG - chr1_4:72795302-72795321 None:intergenic 50.0%
CGATGAGCAGCAAATCGAGA+AGG + chr1_4:72795302-72795321 Msa0183800:CDS 50.0%
TGTACGGAACAGTGCCCTCT+CGG + chr1_4:72794983-72795002 Msa0183800:CDS 55.0%
CAGAGCACAAGATGTCCGAG+AGG - chr1_4:72795001-72795020 None:intergenic 55.0%
GCACCCGCTCTGCATGAATA+AGG - chr1_4:72795219-72795238 None:intergenic 55.0%
! TGTGCTGGCCAAGTGGTTAC+GGG + chr1_4:72795249-72795268 Msa0183800:CDS 55.0%
CGACAGAACCCGTAACCACT+TGG - chr1_4:72795260-72795279 None:intergenic 55.0%
TGTACGGAACAGTGCCCTCT+CGG + chr1_4:72794983-72795002 Msa0183800:CDS 55.0%
CAGAGCACAAGATGTCCGAG+AGG - chr1_4:72795001-72795020 None:intergenic 55.0%
GCACCCGCTCTGCATGAATA+AGG - chr1_4:72795219-72795238 None:intergenic 55.0%
! TGTGCTGGCCAAGTGGTTAC+GGG + chr1_4:72795249-72795268 Msa0183800:CDS 55.0%
CGACAGAACCCGTAACCACT+TGG - chr1_4:72795260-72795279 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 72793545 72795652 72793545 ID=Msa0183800;Name=Msa0183800
chr1_4 mRNA 72793545 72795652 72793545 ID=Msa0183800-mRNA-1;Parent=Msa0183800;Name=Msa0183800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0.5|0.5|1|1|2|251|159
chr1_4 exon 72793545 72793551 72793545 ID=Msa0183800-mRNA-1:exon:24699;Parent=Msa0183800-mRNA-1
chr1_4 exon 72794929 72795652 72794929 ID=Msa0183800-mRNA-1:exon:24700;Parent=Msa0183800-mRNA-1
chr1_4 CDS 72793545 72793551 72793545 ID=Msa0183800-mRNA-1:cds;Parent=Msa0183800-mRNA-1
chr1_4 CDS 72794929 72795401 72794929 ID=Msa0183800-mRNA-1:cds;Parent=Msa0183800-mRNA-1
chr1_4 three_prime_UTR 72795402 72795652 72795402 ID=Msa0183800-mRNA-1:three_prime_utr;Parent=Msa0183800-mRNA-1
Gene Sequence

>Msa0183800

ATGGAAAGTATAAAAATGTCAGCCGTGAATATGTCCACCGTGAGACTTTCAACAGCTTCATTGTACGGAACAGTGCCCTCTCGGACATCTTGTGCTCTGATGAAGAGTCCATCAAGTTTGAGATCTGTGAAGAATGTGTCCAAAACATTTGGACTAAAATCTTCATCATTTAGAGTATCTGCAATGGCAGTATACAAAGTGAAACTGATTGGACCAGATGGAACAGAGAACGAATTTGATGCCCCTGATGACTCTTACATTCTGGATTCAGCTGAAGATGCTGGAGTGGAGCTACCTTATTCATGCAGAGCGGGTGCATGTTCTACTTGTGCTGGCCAAGTGGTTACGGGTTCTGTCGATCAGTCTGATCAATCTTTCCTCGATGAGCAGCAAATCGAGAAGGGTTATCTTCTCACTTGTGTCTCATACCCAAAATCAGATACTGTGATTTACACACACAAGGAGGAAGAACTCTACTAA

Protein sequence

>Msa0183800

MESIKMSAVNMSTVRLSTASLYGTVPSRTSCALMKSPSSLRSVKNVSKTFGLKSSSFRVSAMAVYKVKLIGPDGTENEFDAPDDSYILDSAEDAGVELPYSCRAGACSTCAGQVVTGSVDQSDQSFLDEQQIEKGYLLTCVSYPKSDTVIYTHKEEELY*