AlfalfaGEDB | Msa0043960

M. sativa cultivar zhongmu-4 / Msa0043960

KEGG: K02639
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00111.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0043960	sp\|P27788\|FER3_MAIZE	65.132	152	50	3	11	159	1	152	4.59e-61	188

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0043960	0.809274	2.051429e-50	-8.615850e-47
Msa0008850	Msa0043960	-0.805443	1.331949e-49	-8.615850e-47
Msa0039380	Msa0043960	0.808367	3.207057e-50	-8.615850e-47
Msa0043960	Msa0044050	0.988304	1.692690e-173	-8.615850e-47
Msa0043960	Msa0047470	-0.819580	1.077982e-52	-8.615850e-47
Msa0043960	Msa0057740	-0.823513	1.330144e-53	-8.615850e-47
Msa0043960	Msa0090620	0.994519	6.377742e-208	-8.615850e-47
Msa0043960	Msa0103060	-0.831726	1.417341e-55	-8.615850e-47
Msa0043960	Msa0116950	-0.807342	5.296178e-50	-8.615850e-47
Msa0043960	Msa0129270	0.822953	1.797858e-53	-8.615850e-47
Msa0043960	Msa0183800	0.994117	1.050839e-204	-8.615850e-47
Msa0043960	Msa0185330	0.802481	5.497098e-49	-8.615850e-47
Msa0043960	Msa0185390	-0.817638	2.972979e-52	-8.615850e-47
Msa0043960	Msa0216560	-0.863536	2.321383e-64	-8.615850e-47
Msa0043960	Msa0222070	-0.816474	5.428719e-52	-8.615850e-47
Msa0043960	Msa0222120	-0.817179	3.770556e-52	-8.615850e-47
Msa0043960	Msa0223100	-0.833332	5.667023e-56	-8.615850e-47
Msa0043960	Msa0223290	-0.816725	4.769684e-52	-8.615850e-47
Msa0043960	Msa0223380	-0.818064	2.381807e-52	-8.615850e-47
Msa0043960	Msa0226290	-0.809886	1.516194e-50	-8.615850e-47
Msa0043960	Msa0227290	-0.811606	6.435662e-51	-8.615850e-47
Msa0043960	Msa0251150	-0.807632	4.598192e-50	-8.615850e-47
Msa0043960	Msa0256170	-0.804880	1.746658e-49	-8.615850e-47
Msa0043960	Msa0256430	-0.815961	7.066990e-52	-8.615850e-47
Msa0043960	Msa0259330	-0.806572	7.708818e-50	-8.615850e-47
Msa0043960	Msa0263620	-0.813382	2.633191e-51	-8.615850e-47
Msa0043960	Msa0265210	-0.815315	9.844832e-52	-8.615850e-47
Msa0043960	Msa0295840	-0.842062	3.251243e-58	-8.615850e-47
Msa0043960	Msa0301460	-0.812872	3.406935e-51	-8.615850e-47
Msa0043960	Msa0302650	-0.804115	2.522293e-49	-8.615850e-47
Msa0043960	Msa0336270	-0.820793	5.683762e-53	-8.615850e-47
Msa0043960	Msa0339870	-0.821545	3.813374e-53	-8.615850e-47
Msa0043960	Msa0380430	-0.817830	2.690523e-52	-8.615850e-47
Msa0043960	Msa0389830	-0.800599	1.336023e-48	-8.615850e-47
Msa0043960	Msa0417150	-0.812755	3.614178e-51	-8.615850e-47
Msa0043960	Msa0421100	-0.810179	1.310708e-50	-8.615850e-47
Msa0043960	Msa0421800	-0.831096	2.025427e-55	-8.615850e-47
Msa0043960	Msa0427590	-0.817022	4.091316e-52	-8.615850e-47
Msa0043960	Msa0434630	-0.805681	1.187297e-49	-8.615850e-47
Msa0043960	Msa0456480	-0.826100	3.264334e-54	-8.615850e-47
Msa0043960	Msa0459120	-0.809242	2.084259e-50	-8.615850e-47
Msa0043960	Msa0463540	-0.819494	1.127589e-52	-8.615850e-47
Msa0043960	Msa0466830	-0.810235	1.274742e-50	-8.615850e-47
Msa0043960	Msa0467800	-0.817057	4.017354e-52	-8.615850e-47
Msa0043960	Msa0467880	-0.811501	6.782495e-51	-8.615850e-47
Msa0043960	Msa0482020	-0.804804	1.812200e-49	-8.615850e-47
Msa0043960	Msa0488850	-0.801957	7.045227e-49	-8.615850e-47
Msa0043960	Msa0505660	-0.801159	1.027156e-48	-8.615850e-47
Msa0043960	Msa0513660	-0.800476	1.415442e-48	-8.615850e-47
Msa0043960	Msa0514260	-0.834430	3.010833e-56	-8.615850e-47
Msa0043960	Msa0518160	-0.807017	6.206713e-50	-8.615850e-47
Msa0043960	Msa0542040	-0.813565	2.399723e-51	-8.615850e-47
Msa0043960	Msa0552580	-0.805594	1.237722e-49	-8.615850e-47
Msa0043960	Msa0553520	-0.804697	1.907152e-49	-8.615850e-47
Msa0043960	Msa0558890	-0.810748	9.879099e-51	-8.615850e-47
Msa0043960	Msa0560180	-0.805095	1.575090e-49	-8.615850e-47
Msa0043960	Msa0575990	0.828423	9.064404e-55	-8.615850e-47
Msa0043960	Msa0576100	0.829151	6.042652e-55	-8.615850e-47
Msa0043960	Msa0583930	-0.801180	1.016605e-48	-8.615850e-47
Msa0043960	Msa0606140	-0.817656	2.944717e-52	-8.615850e-47
Msa0043960	Msa0653710	-0.800635	1.314181e-48	-8.615850e-47
Msa0043960	Msa0698900	-0.804397	2.203600e-49	-8.615850e-47
Msa0043960	Msa0716600	0.850424	1.713470e-60	-8.615850e-47
Msa0043960	Msa0721150	-0.814871	1.235252e-51	-8.615850e-47
Msa0043960	Msa0724580	-0.825766	3.919793e-54	-8.615850e-47
Msa0043960	Msa0730180	-0.807279	5.463709e-50	-8.615850e-47
Msa0043960	Msa0736930	-0.800041	1.735568e-48	-8.615850e-47
Msa0043960	Msa0739610	-0.824419	8.157205e-54	-8.615850e-47
Msa0043960	Msa0757990	0.829561	4.804891e-55	-8.615850e-47
Msa0043960	Msa0761760	-0.818312	2.093059e-52	-8.615850e-47
Msa0043960	Msa0793060	-0.826742	2.295525e-54	-8.615850e-47
Msa0043960	Msa0804060	-0.805138	1.542855e-49	-8.615850e-47
Msa0043960	Msa0812450	-0.810409	1.169660e-50	-8.615850e-47
Msa0043960	Msa0842240	-0.821185	4.618195e-53	-8.615850e-47
Msa0043960	Msa0859300	-0.809487	1.846671e-50	-8.615850e-47
Msa0043960	Msa0900320	-0.811776	5.910236e-51	-8.615850e-47
Msa0043960	Msa0934830	-0.809079	2.258863e-50	-8.615850e-47
Msa0043960	Msa0967450	-0.805975	1.029760e-49	-8.615850e-47
Msa0043960	Msa0971860	-0.817752	2.801917e-52	-8.615850e-47
Msa0043960	Msa0975970	-0.812821	3.495401e-51	-8.615850e-47
Msa0043960	Msa0978000	-0.802741	4.858770e-49	-8.615850e-47
Msa0043960	Msa0992590	-0.802298	5.995952e-49	-8.615850e-47
Msa0043960	Msa1000470	-0.810808	9.589030e-51	-8.615850e-47
Msa0043960	Msa1002040	-0.813110	3.020980e-51	-8.615850e-47
Msa0043960	Msa1015060	-0.800371	1.487448e-48	-8.615850e-47
Msa0043960	Msa1016110	-0.828122	1.071317e-54	-8.615850e-47
Msa0043960	Msa1033160	-0.802245	6.146940e-49	-8.615850e-47
Msa0043960	Msa1037060	0.813148	2.964068e-51	-8.615850e-47
Msa0043960	Msa1070900	-0.803436	3.489515e-49	-8.615850e-47
Msa0043960	Msa1077940	0.809753	1.619471e-50	-8.615850e-47
Msa0043960	Msa1081850	-0.817772	2.773268e-52	-8.615850e-47
Msa0043960	Msa1083730	0.800521	1.386056e-48	-8.615850e-47
Msa0043960	Msa1085590	0.809440	1.890287e-50	-8.615850e-47
Msa0043960	Msa1102180	-0.804013	2.648749e-49	-8.615850e-47
Msa0043960	Msa1102200	-0.809639	1.713141e-50	-8.615850e-47
Msa0043960	Msa1126340	0.800894	1.163239e-48	-8.615850e-47
Msa0043960	Msa1138600	-0.831212	1.896692e-55	-8.615850e-47
Msa0043960	Msa1157920	-0.836530	8.864786e-57	-8.615850e-47
Msa0043960	Msa1161160	-0.814954	1.183916e-51	-8.615850e-47
Msa0043960	Msa1164800	0.821158	4.684922e-53	-8.615850e-47
Msa0043960	Msa1175590	-0.805082	1.585095e-49	-8.615850e-47
Msa0043960	Msa1214900	-0.838160	3.392165e-57	-8.615850e-47
Msa0043960	Msa1215210	-0.810698	1.012688e-50	-8.615850e-47
Msa0043960	Msa1215530	-0.803779	2.962366e-49	-8.615850e-47
Msa0043960	Msa1219780	0.821894	3.168129e-53	-8.615850e-47
Msa0043960	Msa1235770	-0.803638	3.168529e-49	-8.615850e-47
Msa0043960	Msa1248400	-0.800773	1.231716e-48	-8.615850e-47
Msa0043960	Msa1258100	-0.851785	7.075544e-61	-8.615850e-47
Msa0043960	Msa1266710	0.819776	9.725017e-53	-8.615850e-47
Msa0043960	Msa1284390	-0.815658	8.259542e-52	-8.615850e-47
Msa0043960	Msa1286910	-0.802507	5.428885e-49	-8.615850e-47
Msa0043960	Msa1298740	-0.845454	4.019663e-59	-8.615850e-47
Msa0043960	Msa1306720	0.817870	2.634699e-52	-8.615850e-47
Msa0043960	Msa1335500	0.826038	3.378010e-54	-8.615850e-47
Msa0043960	Msa1349360	-0.801160	1.026320e-48	-8.615850e-47
Msa0043960	Msa1352290	-0.805334	1.403880e-49	-8.615850e-47
Msa0043960	Msa1367940	-0.809334	1.992018e-50	-8.615850e-47
Msa0043960	Msa1368180	-0.828168	1.044343e-54	-8.615850e-47
Msa0043960	Msa1368730	-0.812163	4.868454e-51	-8.615850e-47
Msa0043960	Msa1374810	-0.805118	1.557423e-49	-8.615850e-47
Msa0043960	Msa1381130	-0.811513	6.743507e-51	-8.615850e-47
Msa0043960	Msa1385580	-0.808945	2.413268e-50	-8.615850e-47
Msa0043960	Msa1407210	0.815732	7.949857e-52	-8.615850e-47
Msa0043960	Msa1423550	-0.810080	1.376871e-50	-8.615850e-47
Msa0043960	Msa1435910	-0.801751	7.766844e-49	-8.615850e-47
Msa0043960	Msa1440180	-0.805977	1.028572e-49	-8.615850e-47
Msa0043960	Msa1442220	0.802678	5.005951e-49	-8.615850e-47
Msa0043960	Msa1449740	-0.804508	2.088804e-49	-8.615850e-47
Msa0043960	Msa1450130	0.812004	5.271815e-51	-8.615850e-47
Msa0043960	Msa1451840	-0.801866	7.356263e-49	-8.615850e-47
Msa0043960	Msa1458920	-0.803450	3.466023e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0043960	MtrunA17_Chr1g0210631	94.969	159	8	0	1	159	60	218	6.83e-110	311
Msa0043960	MtrunA17_Chr1g0210661	90.196	153	15	0	6	158	1	153	7.88e-101	286
Msa0043960	MtrunA17_Chr2g0321501	72.727	132	35	1	29	159	24	155	2.19e-67	201
Msa0043960	MtrunA17_Chr4g0026331	65.385	156	48	3	6	159	4	155	7.21e-66	197
Msa0043960	MtrunA17_Chr2g0277481	55.102	147	60	3	17	158	3	148	5.66e-50	157
Msa0043960	MtrunA17_Chr8g0380641	55.556	144	61	3	17	158	4	146	7.22e-50	157
Msa0043960	MtrunA17_Chr5g0394481	31.757	148	96	3	11	158	1	143	1.82e-19	79.7
Msa0043960	MtrunA17_Chr4g0054691	39.535	86	52	0	74	159	74	159	1.06e-18	78.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0043960	AT2G27510.1	60.000	155	56	3	11	159	1	155	2.73e-60	184
Msa0043960	AT1G60950.1	56.209	153	56	5	11	158	1	147	6.51e-50	157
Msa0043960	AT1G10960.1	58.915	129	47	3	35	158	20	147	6.27e-47	150
Msa0043960	AT5G10000.1	52.381	126	57	2	36	158	22	147	8.15e-40	132
Msa0043960	AT4G14890.1	44.554	101	53	3	58	158	47	144	7.59e-20	81.3
Msa0043960	AT1G32550.1	39.535	86	52	0	74	159	69	154	3.95e-18	77.4
Msa0043960	AT1G32550.2	37.255	102	45	3	74	159	69	167	8.37e-13	63.5

Find 40 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAAATCACAGTATCTGATTT+TGG	0.126493	1_1:-75445619	None:intergenic
TTCACAGATCTCAAACTTGA+TGG	0.324898	1_1:-75445298	None:intergenic
TTGTGCTGGCCAAGTGGTTA+CGG	0.329557	1_1:+75445516	Msa0043960:CDS
AAAGAAAGGAAACTTGTTAT+AGG	0.331567	1_1:+75445784	Msa0043960:three_prime_UTR
CCCTGATGACTCTTACATTC+TGG	0.354348	1_1:+75445432	Msa0043960:CDS
GCACCCGCTCTGCATGAATA+AGG	0.356204	1_1:-75445484	None:intergenic
GTTGCCAGTTGTTAATGATA+TGG	0.392583	1_1:+75445880	Msa0043960:three_prime_UTR
TGTGCTGGCCAAGTGGTTAC+GGG	0.411836	1_1:+75445517	Msa0043960:CDS
AAGAATGTGTCCAAAACATT+TGG	0.421132	1_1:+75445319	Msa0043960:CDS
AATTCGTTCTCTGTTCCATC+TGG	0.449513	1_1:-75445403	None:intergenic
TCCAGAATGTAAGAGTCATC+AGG	0.451621	1_1:-75445433	None:intergenic
TTGACTATGTGTCATGTAGC+TGG	0.452024	1_1:+75445707	Msa0043960:three_prime_UTR
CTTTCAACAGCTTCATTGTA+CGG	0.469663	1_1:+75445235	Msa0043960:CDS
CACACCATATCATTAACAAC+TGG	0.471108	1_1:-75445884	None:intergenic
CTGGATTCAGCTGAAGATGC+TGG	0.504908	1_1:+75445451	Msa0043960:CDS
GGTGCATGTTCTACTTGTGC+TGG	0.505031	1_1:+75445502	Msa0043960:CDS
GTATACAAAGTGAAACTGAT+TGG	0.509553	1_1:+75445379	Msa0043960:CDS
TAATGATATGGTGTGTAACT+TGG	0.510456	1_1:+75445892	Msa0043960:three_prime_UTR
CTACCTTATTCATGCAGAGC+GGG	0.513286	1_1:+75445481	Msa0043960:CDS
CGACAGAACCCGTAACCACT+TGG	0.534235	1_1:-75445525	None:intergenic
GTGAAACTGATTGGACCAGA+TGG	0.549003	1_1:+75445388	Msa0043960:CDS
TGTACGGAACAGTGCCCTCT+CGG	0.555453	1_1:+75445251	Msa0043960:CDS
CGATGAGCAGCAAATCGAGA+AGG	0.589494	1_1:+75445570	Msa0043960:CDS
CCAGAATGTAAGAGTCATCA+GGG	0.593554	1_1:-75445432	None:intergenic
TCTCACGGTGGACATATTCA+CGG	0.595716	1_1:-75445212	None:intergenic
ATCATTTAGAGTATCTGCAA+TGG	0.596293	1_1:+75445354	Msa0043960:CDS
TGGTTGTTGTGAAACTATGT+TGG	0.601901	1_1:+75445727	Msa0043960:three_prime_UTR
TTCTACTTGTGCTGGCCAAG+TGG	0.605670	1_1:+75445510	Msa0043960:CDS
TTCAGCTGAAGATGCTGGAG+TGG	0.623617	1_1:+75445456	Msa0043960:CDS
GATGAGCAGCAAATCGAGAA+GGG	0.629753	1_1:+75445571	Msa0043960:CDS
TACTGTGATTTACACACACA+AGG	0.647153	1_1:+75445630	Msa0043960:CDS
TCTCGATTTGCTGCTCATCG+AGG	0.652018	1_1:-75445567	None:intergenic
ACACATAGTCAAAACATGCA+CGG	0.652038	1_1:-75445696	None:intergenic
TGAAGCTGTTGAAAGTCTCA+CGG	0.659563	1_1:-75445227	None:intergenic
AGAGCACAAGATGTCCGAGA+GGG	0.687025	1_1:-75445265	None:intergenic
GCTACCTTATTCATGCAGAG+CGG	0.717700	1_1:+75445480	Msa0043960:CDS
TGTGATTTACACACACAAGG+AGG	0.721823	1_1:+75445633	Msa0043960:CDS
CAGAGCACAAGATGTCCGAG+AGG	0.730685	1_1:-75445266	None:intergenic
CAGAATGTAAGAGTCATCAG+GGG	0.754480	1_1:-75445431	None:intergenic
AGCTGTTGAAAGTCTCACGG+TGG	0.759008	1_1:-75445224	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTATTTTAATTGATTCAA+TGG	+	chr1_1:75444173-75444192	Msa0043960:intron	10.0%
!!!	AATTGTAAAACATTTTTATA+AGG	-	chr1_1:75444539-75444558	None:intergenic	10.0%
!!!	TTTTTTTTTTTTTTTTGGAA+TGG	-	chr1_1:75445032-75445051	None:intergenic	10.0%
!!!	ACAAGTTTTTTTTTTTTTTT+TGG	-	chr1_1:75445037-75445056	None:intergenic	10.0%
!!	AAAAAAAAAAAAAAAACTTG+TGG	+	chr1_1:75445036-75445055	Msa0043960:intron	10.0%
!!!	ATCTATATTTATTTTTATTC+AGG	+	chr1_1:75445175-75445194	Msa0043960:intron	10.0%
!!!	AATTATTTTAATTGATTCAA+TGG	+	chr1_1:75444173-75444192	Msa0043960:intron	10.0%
!!!	AATTGTAAAACATTTTTATA+AGG	-	chr1_1:75444539-75444558	None:intergenic	10.0%
!!!	TTTTTTTTTTTTTTTTGGAA+TGG	-	chr1_1:75445032-75445051	None:intergenic	10.0%
!!!	ACAAGTTTTTTTTTTTTTTT+TGG	-	chr1_1:75445037-75445056	None:intergenic	10.0%
!!	AAAAAAAAAAAAAAAACTTG+TGG	+	chr1_1:75445036-75445055	Msa0043960:intron	10.0%
!!!	ATCTATATTTATTTTTATTC+AGG	+	chr1_1:75445175-75445194	Msa0043960:intron	10.0%
!!	ATAAATATCATTATGATGAT+GGG	+	chr1_1:75444706-75444725	Msa0043960:intron	15.0%
!!!	TTTTCTATAATTACTATTAC+TGG	+	chr1_1:75445818-75445837	Msa0043960:three_prime_UTR	15.0%
!!	ATAAATATCATTATGATGAT+GGG	+	chr1_1:75444706-75444725	Msa0043960:intron	15.0%
!!!	TTTTCTATAATTACTATTAC+TGG	+	chr1_1:75445818-75445837	Msa0043960:three_prime_UTR	15.0%
!!	AATAACATAGGTTATAAACT+TGG	-	chr1_1:75444214-75444233	None:intergenic	20.0%
!!!	TGGTGTTTTTTTGTTTTTTT+TGG	+	chr1_1:75444317-75444336	Msa0043960:intron	20.0%
!!!	TGTAAAACATTTTTATAAGG+AGG	-	chr1_1:75444536-75444555	None:intergenic	20.0%
!!	CATAAATATCATTATGATGA+TGG	+	chr1_1:75444705-75444724	Msa0043960:intron	20.0%
!!	TATATAAATAACCTCCAAAA+CGG	-	chr1_1:75444999-75445018	None:intergenic	20.0%
!!!	TCATTTTAGGAAATAAAGAA+AGG	+	chr1_1:75445770-75445789	Msa0043960:three_prime_UTR	20.0%
!!	AATAACATAGGTTATAAACT+TGG	-	chr1_1:75444214-75444233	None:intergenic	20.0%
!!!	TGGTGTTTTTTTGTTTTTTT+TGG	+	chr1_1:75444317-75444336	Msa0043960:intron	20.0%
!!!	TGTAAAACATTTTTATAAGG+AGG	-	chr1_1:75444536-75444555	None:intergenic	20.0%
!!	CATAAATATCATTATGATGA+TGG	+	chr1_1:75444705-75444724	Msa0043960:intron	20.0%
!!	TATATAAATAACCTCCAAAA+CGG	-	chr1_1:75444999-75445018	None:intergenic	20.0%
!!!	TCATTTTAGGAAATAAAGAA+AGG	+	chr1_1:75445770-75445789	Msa0043960:three_prime_UTR	20.0%
!	GTGAATCAATCATTTGATTA+TGG	+	chr1_1:75443820-75443839	Msa0043960:intron	25.0%
!	TCATTTGATTATGGAAATGA+TGG	+	chr1_1:75443829-75443848	Msa0043960:intron	25.0%
!!!	TCGTCGTAGTTTTTTATATA+AGG	+	chr1_1:75443864-75443883	Msa0043960:intron	25.0%
!	TAGAAAAAGAGATAAGACAA+TGG	+	chr1_1:75443977-75443996	Msa0043960:intron	25.0%
!	ATGAGAGAATGAAATAACAT+AGG	-	chr1_1:75444226-75444245	None:intergenic	25.0%
!	GTAAAAATACAGTATAGCTA+AGG	-	chr1_1:75444390-75444409	None:intergenic	25.0%
!	AATCAGATAAGTACCAAATA+CGG	-	chr1_1:75444414-75444433	None:intergenic	25.0%
!	TGTATCTTATTAACAATCAC+TGG	-	chr1_1:75444437-75444456	None:intergenic	25.0%
!!!	AACTTTTTTGTCAACTTCTA+CGG	-	chr1_1:75444562-75444581	None:intergenic	25.0%
!	GTTAATACTTAAAGCTAAGT+AGG	+	chr1_1:75444579-75444598	Msa0043960:intron	25.0%
!	AAAGGCAATTTAAAGAATCA+AGG	-	chr1_1:75444767-75444786	None:intergenic	25.0%
!	AAAGAAATCATGTGTATCAA+AGG	-	chr1_1:75444785-75444804	None:intergenic	25.0%
!!!	TCTATTCTTGTGTTTTGTTA+TGG	+	chr1_1:75444820-75444839	Msa0043960:intron	25.0%
!	ATCAAAAGAAAAACTTGTGT+AGG	+	chr1_1:75444863-75444882	Msa0043960:intron	25.0%
!!	TTTTATCCTCTATGTGTATT+TGG	+	chr1_1:75444898-75444917	Msa0043960:intron	25.0%
!	TAAAAACCAAATACACATAG+AGG	-	chr1_1:75444907-75444926	None:intergenic	25.0%
!	AATTTCTTGTAAGAACTTTC+AGG	+	chr1_1:75445064-75445083	Msa0043960:intron	25.0%
!	ATTTCTTGTAAGAACTTTCA+GGG	+	chr1_1:75445065-75445084	Msa0043960:intron	25.0%
!!!	AGATTTTAGTCCAAATGTTT+TGG	-	chr1_1:75445332-75445351	None:intergenic	25.0%
!!	AAATCACAGTATCTGATTTT+GGG	-	chr1_1:75445621-75445640	None:intergenic	25.0%
!!	TAAATCACAGTATCTGATTT+TGG	-	chr1_1:75445622-75445641	None:intergenic	25.0%
!!	GTAACTTACTGAATCATTTT+AGG	+	chr1_1:75445757-75445776	Msa0043960:three_prime_UTR	25.0%
!!!	AAAGAAAGGAAACTTGTTAT+AGG	+	chr1_1:75445784-75445803	Msa0043960:three_prime_UTR	25.0%
!	GTGAATCAATCATTTGATTA+TGG	+	chr1_1:75443820-75443839	Msa0043960:intron	25.0%
!	TCATTTGATTATGGAAATGA+TGG	+	chr1_1:75443829-75443848	Msa0043960:intron	25.0%
!!!	TCGTCGTAGTTTTTTATATA+AGG	+	chr1_1:75443864-75443883	Msa0043960:intron	25.0%
!	TAGAAAAAGAGATAAGACAA+TGG	+	chr1_1:75443977-75443996	Msa0043960:intron	25.0%
!	ATGAGAGAATGAAATAACAT+AGG	-	chr1_1:75444226-75444245	None:intergenic	25.0%
!	GTAAAAATACAGTATAGCTA+AGG	-	chr1_1:75444390-75444409	None:intergenic	25.0%
!	AATCAGATAAGTACCAAATA+CGG	-	chr1_1:75444414-75444433	None:intergenic	25.0%
!	TGTATCTTATTAACAATCAC+TGG	-	chr1_1:75444437-75444456	None:intergenic	25.0%
!!!	AACTTTTTTGTCAACTTCTA+CGG	-	chr1_1:75444562-75444581	None:intergenic	25.0%
!	GTTAATACTTAAAGCTAAGT+AGG	+	chr1_1:75444579-75444598	Msa0043960:intron	25.0%
!	AAAGGCAATTTAAAGAATCA+AGG	-	chr1_1:75444767-75444786	None:intergenic	25.0%
!	AAAGAAATCATGTGTATCAA+AGG	-	chr1_1:75444785-75444804	None:intergenic	25.0%
!!!	TCTATTCTTGTGTTTTGTTA+TGG	+	chr1_1:75444820-75444839	Msa0043960:intron	25.0%
!	ATCAAAAGAAAAACTTGTGT+AGG	+	chr1_1:75444863-75444882	Msa0043960:intron	25.0%
!!	TTTTATCCTCTATGTGTATT+TGG	+	chr1_1:75444898-75444917	Msa0043960:intron	25.0%
!	TAAAAACCAAATACACATAG+AGG	-	chr1_1:75444907-75444926	None:intergenic	25.0%
!	AATTTCTTGTAAGAACTTTC+AGG	+	chr1_1:75445064-75445083	Msa0043960:intron	25.0%
!	ATTTCTTGTAAGAACTTTCA+GGG	+	chr1_1:75445065-75445084	Msa0043960:intron	25.0%
!!!	AGATTTTAGTCCAAATGTTT+TGG	-	chr1_1:75445332-75445351	None:intergenic	25.0%
!!	AAATCACAGTATCTGATTTT+GGG	-	chr1_1:75445621-75445640	None:intergenic	25.0%
!!	TAAATCACAGTATCTGATTT+TGG	-	chr1_1:75445622-75445641	None:intergenic	25.0%
!!	GTAACTTACTGAATCATTTT+AGG	+	chr1_1:75445757-75445776	Msa0043960:three_prime_UTR	25.0%
!!!	AAAGAAAGGAAACTTGTTAT+AGG	+	chr1_1:75445784-75445803	Msa0043960:three_prime_UTR	25.0%
	AAGATAAAAGGGAAATGGAA+AGG	-	chr1_1:75443920-75443939	None:intergenic	30.0%
!	TAATTGATTCAATGGTACAC+TGG	+	chr1_1:75444181-75444200	Msa0043960:intron	30.0%
	TATTTCATTCTCTCATCCTA+TGG	+	chr1_1:75444230-75444249	Msa0043960:intron	30.0%
!!!	CTATGGTACTTTTTTTGACT+GGG	+	chr1_1:75444247-75444266	Msa0043960:intron	30.0%
!!!	TATGGTACTTTTTTTGACTG+GGG	+	chr1_1:75444248-75444267	Msa0043960:intron	30.0%
!!	CTGTATTTTTACACCGTATT+TGG	+	chr1_1:75444398-75444417	Msa0043960:intron	30.0%
	TTTATCCACTTCAGGAATTA+GGG	-	chr1_1:75444480-75444499	None:intergenic	30.0%
!	TTTTATCCACTTCAGGAATT+AGG	-	chr1_1:75444481-75444500	None:intergenic	30.0%
	TAATTCCTGAAGTGGATAAA+AGG	+	chr1_1:75444480-75444499	Msa0043960:intron	30.0%
	AATTCCTGAAGTGGATAAAA+GGG	+	chr1_1:75444481-75444500	Msa0043960:intron	30.0%
	TTTCTTGTAAGAACTTTCAG+GGG	+	chr1_1:75445066-75445085	Msa0043960:intron	30.0%
	AAGAATGTGTCCAAAACATT+TGG	+	chr1_1:75445319-75445338	Msa0043960:CDS	30.0%
!	ATCATTTAGAGTATCTGCAA+TGG	+	chr1_1:75445354-75445373	Msa0043960:CDS	30.0%
	GTATACAAAGTGAAACTGAT+TGG	+	chr1_1:75445379-75445398	Msa0043960:CDS	30.0%
	TAATGATATGGTGTGTAACT+TGG	+	chr1_1:75445892-75445911	Msa0043960:three_prime_UTR	30.0%
!	AATGATTGATTCACTTTCCA+TGG	-	chr1_1:75443814-75443833	None:intergenic	30.0%
	AAGATAAAAGGGAAATGGAA+AGG	-	chr1_1:75443920-75443939	None:intergenic	30.0%
!	TAATTGATTCAATGGTACAC+TGG	+	chr1_1:75444181-75444200	Msa0043960:intron	30.0%
	TATTTCATTCTCTCATCCTA+TGG	+	chr1_1:75444230-75444249	Msa0043960:intron	30.0%
!!!	CTATGGTACTTTTTTTGACT+GGG	+	chr1_1:75444247-75444266	Msa0043960:intron	30.0%
!!!	TATGGTACTTTTTTTGACTG+GGG	+	chr1_1:75444248-75444267	Msa0043960:intron	30.0%
!!	CTGTATTTTTACACCGTATT+TGG	+	chr1_1:75444398-75444417	Msa0043960:intron	30.0%
	TTTATCCACTTCAGGAATTA+GGG	-	chr1_1:75444480-75444499	None:intergenic	30.0%
!	TTTTATCCACTTCAGGAATT+AGG	-	chr1_1:75444481-75444500	None:intergenic	30.0%
	TAATTCCTGAAGTGGATAAA+AGG	+	chr1_1:75444480-75444499	Msa0043960:intron	30.0%
	AATTCCTGAAGTGGATAAAA+GGG	+	chr1_1:75444481-75444500	Msa0043960:intron	30.0%
	TTTCTTGTAAGAACTTTCAG+GGG	+	chr1_1:75445066-75445085	Msa0043960:intron	30.0%
	AAGAATGTGTCCAAAACATT+TGG	+	chr1_1:75445319-75445338	Msa0043960:CDS	30.0%
!	ATCATTTAGAGTATCTGCAA+TGG	+	chr1_1:75445354-75445373	Msa0043960:CDS	30.0%
	GTATACAAAGTGAAACTGAT+TGG	+	chr1_1:75445379-75445398	Msa0043960:CDS	30.0%
	TAATGATATGGTGTGTAACT+TGG	+	chr1_1:75445892-75445911	Msa0043960:three_prime_UTR	30.0%
	CAGTGAAGATAAAAGGGAAA+TGG	-	chr1_1:75443925-75443944	None:intergenic	35.0%
	ACCTCACAGTGAAGATAAAA+GGG	-	chr1_1:75443931-75443950	None:intergenic	35.0%
	AACCTCACAGTGAAGATAAA+AGG	-	chr1_1:75443932-75443951	None:intergenic	35.0%
	AAGACAATGGCGTAAATTGA+AGG	+	chr1_1:75443990-75444009	Msa0043960:intron	35.0%
	AATGGCGTAAATTGAAGGTA+AGG	+	chr1_1:75443995-75444014	Msa0043960:intron	35.0%
	AGAACAAGGATGGTTTAGTA+GGG	+	chr1_1:75444072-75444091	Msa0043960:intron	35.0%
!!	CCAGTCAAAAAAAGTACCAT+AGG	-	chr1_1:75444249-75444268	None:intergenic	35.0%
!!!	CCTATGGTACTTTTTTTGAC+TGG	+	chr1_1:75444246-75444265	Msa0043960:intron	35.0%
!	ATGTATTTTACCGATACTGC+TGG	+	chr1_1:75444297-75444316	Msa0043960:intron	35.0%
	CAAAAAAACACCAGCAGTAT+CGG	-	chr1_1:75444310-75444329	None:intergenic	35.0%
	AAGATACAACTTCTGACAAC+CGG	+	chr1_1:75444449-75444468	Msa0043960:intron	35.0%
!	TTTTCCCTTTTATCCACTTC+AGG	-	chr1_1:75444488-75444507	None:intergenic	35.0%
!!	TTCTTGTGTTTTGTTATGGC+TGG	+	chr1_1:75444824-75444843	Msa0043960:intron	35.0%
!	TATGGCTGGATTTGCTTATT+TGG	+	chr1_1:75444838-75444857	Msa0043960:intron	35.0%
!	ATGGCTGGATTTGCTTATTT+GGG	+	chr1_1:75444839-75444858	Msa0043960:intron	35.0%
	GAAAAACTTGTGTAGGATTG+TGG	+	chr1_1:75444870-75444889	Msa0043960:intron	35.0%
	TAAATAACCTCCAAAACGGA+TGG	-	chr1_1:75444995-75445014	None:intergenic	35.0%
	CTTTCAACAGCTTCATTGTA+CGG	+	chr1_1:75445235-75445254	Msa0043960:CDS	35.0%
	TTCACAGATCTCAAACTTGA+TGG	-	chr1_1:75445301-75445320	None:intergenic	35.0%
	TACTGTGATTTACACACACA+AGG	+	chr1_1:75445630-75445649	Msa0043960:CDS	35.0%
	ACACATAGTCAAAACATGCA+CGG	-	chr1_1:75445699-75445718	None:intergenic	35.0%
	TGGTTGTTGTGAAACTATGT+TGG	+	chr1_1:75445727-75445746	Msa0043960:three_prime_UTR	35.0%
	GTTGCCAGTTGTTAATGATA+TGG	+	chr1_1:75445880-75445899	Msa0043960:three_prime_UTR	35.0%
	CACACCATATCATTAACAAC+TGG	-	chr1_1:75445887-75445906	None:intergenic	35.0%
	CAGTGAAGATAAAAGGGAAA+TGG	-	chr1_1:75443925-75443944	None:intergenic	35.0%
	ACCTCACAGTGAAGATAAAA+GGG	-	chr1_1:75443931-75443950	None:intergenic	35.0%
	AACCTCACAGTGAAGATAAA+AGG	-	chr1_1:75443932-75443951	None:intergenic	35.0%
	AAGACAATGGCGTAAATTGA+AGG	+	chr1_1:75443990-75444009	Msa0043960:intron	35.0%
	AATGGCGTAAATTGAAGGTA+AGG	+	chr1_1:75443995-75444014	Msa0043960:intron	35.0%
	AGAACAAGGATGGTTTAGTA+GGG	+	chr1_1:75444072-75444091	Msa0043960:intron	35.0%
!!	CCAGTCAAAAAAAGTACCAT+AGG	-	chr1_1:75444249-75444268	None:intergenic	35.0%
!!!	CCTATGGTACTTTTTTTGAC+TGG	+	chr1_1:75444246-75444265	Msa0043960:intron	35.0%
!	ATGTATTTTACCGATACTGC+TGG	+	chr1_1:75444297-75444316	Msa0043960:intron	35.0%
	CAAAAAAACACCAGCAGTAT+CGG	-	chr1_1:75444310-75444329	None:intergenic	35.0%
	AAGATACAACTTCTGACAAC+CGG	+	chr1_1:75444449-75444468	Msa0043960:intron	35.0%
!	TTTTCCCTTTTATCCACTTC+AGG	-	chr1_1:75444488-75444507	None:intergenic	35.0%
!!	TTCTTGTGTTTTGTTATGGC+TGG	+	chr1_1:75444824-75444843	Msa0043960:intron	35.0%
!	TATGGCTGGATTTGCTTATT+TGG	+	chr1_1:75444838-75444857	Msa0043960:intron	35.0%
!	ATGGCTGGATTTGCTTATTT+GGG	+	chr1_1:75444839-75444858	Msa0043960:intron	35.0%
	GAAAAACTTGTGTAGGATTG+TGG	+	chr1_1:75444870-75444889	Msa0043960:intron	35.0%
	TAAATAACCTCCAAAACGGA+TGG	-	chr1_1:75444995-75445014	None:intergenic	35.0%
	CTTTCAACAGCTTCATTGTA+CGG	+	chr1_1:75445235-75445254	Msa0043960:CDS	35.0%
	TTCACAGATCTCAAACTTGA+TGG	-	chr1_1:75445301-75445320	None:intergenic	35.0%
	TACTGTGATTTACACACACA+AGG	+	chr1_1:75445630-75445649	Msa0043960:CDS	35.0%
	ACACATAGTCAAAACATGCA+CGG	-	chr1_1:75445699-75445718	None:intergenic	35.0%
	TGGTTGTTGTGAAACTATGT+TGG	+	chr1_1:75445727-75445746	Msa0043960:three_prime_UTR	35.0%
	GTTGCCAGTTGTTAATGATA+TGG	+	chr1_1:75445880-75445899	Msa0043960:three_prime_UTR	35.0%
	CACACCATATCATTAACAAC+TGG	-	chr1_1:75445887-75445906	None:intergenic	35.0%
!	TCCCTTTTATCTTCACTGTG+AGG	+	chr1_1:75443927-75443946	Msa0043960:intron	40.0%
	ATCTTCACTGTGAGGTTTGT+AGG	+	chr1_1:75443935-75443954	Msa0043960:intron	40.0%
	TCTTCACTGTGAGGTTTGTA+GGG	+	chr1_1:75443936-75443955	Msa0043960:intron	40.0%
	CAAGTGGTTCATAGAGAACA+AGG	+	chr1_1:75444058-75444077	Msa0043960:intron	40.0%
	TGGTTCATAGAGAACAAGGA+TGG	+	chr1_1:75444062-75444081	Msa0043960:intron	40.0%
	GAGAACAAGGATGGTTTAGT+AGG	+	chr1_1:75444071-75444090	Msa0043960:intron	40.0%
	GAACAAGGATGGTTTAGTAG+GGG	+	chr1_1:75444073-75444092	Msa0043960:intron	40.0%
	AGTAGGGGAAGAGATAAACA+AGG	+	chr1_1:75444088-75444107	Msa0043960:intron	40.0%
	AGAGATAAACAAGGAGGGAT+TGG	+	chr1_1:75444097-75444116	Msa0043960:intron	40.0%
	GAGATAAACAAGGAGGGATT+GGG	+	chr1_1:75444098-75444117	Msa0043960:intron	40.0%
	ATTCAATGGTACACTGGTGA+GGG	+	chr1_1:75444187-75444206	Msa0043960:intron	40.0%
	AGTGATGCAAAGAAAACCTG+AGG	+	chr1_1:75444605-75444624	Msa0043960:intron	40.0%
	GTGATGCAAAGAAAACCTGA+GGG	+	chr1_1:75444606-75444625	Msa0043960:intron	40.0%
	CATGCACAATGACTTACAAG+TGG	-	chr1_1:75444732-75444751	None:intergenic	40.0%
!	TGGCTGGATTTGCTTATTTG+GGG	+	chr1_1:75444840-75444859	Msa0043960:intron	40.0%
!	GTACTTGATTCCATCCGTTT+TGG	+	chr1_1:75444982-75445001	Msa0043960:intron	40.0%
	TGAAGCTGTTGAAAGTCTCA+CGG	-	chr1_1:75445230-75445249	None:intergenic	40.0%
	AATTCGTTCTCTGTTCCATC+TGG	-	chr1_1:75445406-75445425	None:intergenic	40.0%
	CAGAATGTAAGAGTCATCAG+GGG	-	chr1_1:75445434-75445453	None:intergenic	40.0%
	CCAGAATGTAAGAGTCATCA+GGG	-	chr1_1:75445435-75445454	None:intergenic	40.0%
	TCCAGAATGTAAGAGTCATC+AGG	-	chr1_1:75445436-75445455	None:intergenic	40.0%
	TGTGATTTACACACACAAGG+AGG	+	chr1_1:75445633-75445652	Msa0043960:CDS	40.0%
	TTGACTATGTGTCATGTAGC+TGG	+	chr1_1:75445707-75445726	Msa0043960:three_prime_UTR	40.0%
!	TCCCTTTTATCTTCACTGTG+AGG	+	chr1_1:75443927-75443946	Msa0043960:intron	40.0%
	ATCTTCACTGTGAGGTTTGT+AGG	+	chr1_1:75443935-75443954	Msa0043960:intron	40.0%
	TCTTCACTGTGAGGTTTGTA+GGG	+	chr1_1:75443936-75443955	Msa0043960:intron	40.0%
	CAAGTGGTTCATAGAGAACA+AGG	+	chr1_1:75444058-75444077	Msa0043960:intron	40.0%
	TGGTTCATAGAGAACAAGGA+TGG	+	chr1_1:75444062-75444081	Msa0043960:intron	40.0%
	GAGAACAAGGATGGTTTAGT+AGG	+	chr1_1:75444071-75444090	Msa0043960:intron	40.0%
	GAACAAGGATGGTTTAGTAG+GGG	+	chr1_1:75444073-75444092	Msa0043960:intron	40.0%
	AGTAGGGGAAGAGATAAACA+AGG	+	chr1_1:75444088-75444107	Msa0043960:intron	40.0%
	AGAGATAAACAAGGAGGGAT+TGG	+	chr1_1:75444097-75444116	Msa0043960:intron	40.0%
	GAGATAAACAAGGAGGGATT+GGG	+	chr1_1:75444098-75444117	Msa0043960:intron	40.0%
	ATTCAATGGTACACTGGTGA+GGG	+	chr1_1:75444187-75444206	Msa0043960:intron	40.0%
	AGTGATGCAAAGAAAACCTG+AGG	+	chr1_1:75444605-75444624	Msa0043960:intron	40.0%
	GTGATGCAAAGAAAACCTGA+GGG	+	chr1_1:75444606-75444625	Msa0043960:intron	40.0%
	CATGCACAATGACTTACAAG+TGG	-	chr1_1:75444732-75444751	None:intergenic	40.0%
!	TGGCTGGATTTGCTTATTTG+GGG	+	chr1_1:75444840-75444859	Msa0043960:intron	40.0%
!	GTACTTGATTCCATCCGTTT+TGG	+	chr1_1:75444982-75445001	Msa0043960:intron	40.0%
	TGAAGCTGTTGAAAGTCTCA+CGG	-	chr1_1:75445230-75445249	None:intergenic	40.0%
	AATTCGTTCTCTGTTCCATC+TGG	-	chr1_1:75445406-75445425	None:intergenic	40.0%
	CAGAATGTAAGAGTCATCAG+GGG	-	chr1_1:75445434-75445453	None:intergenic	40.0%
	CCAGAATGTAAGAGTCATCA+GGG	-	chr1_1:75445435-75445454	None:intergenic	40.0%
	TCCAGAATGTAAGAGTCATC+AGG	-	chr1_1:75445436-75445455	None:intergenic	40.0%
	TGTGATTTACACACACAAGG+AGG	+	chr1_1:75445633-75445652	Msa0043960:CDS	40.0%
	TTGACTATGTGTCATGTAGC+TGG	+	chr1_1:75445707-75445726	Msa0043960:three_prime_UTR	40.0%
	AGACATGTTGAGTCTGCAAG+TGG	+	chr1_1:75444042-75444061	Msa0043960:intron	45.0%
	AGGGGAAGAGATAAACAAGG+AGG	+	chr1_1:75444091-75444110	Msa0043960:intron	45.0%
	GGGGAAGAGATAAACAAGGA+GGG	+	chr1_1:75444092-75444111	Msa0043960:intron	45.0%
	GATTCAATGGTACACTGGTG+AGG	+	chr1_1:75444186-75444205	Msa0043960:intron	45.0%
!!	TTTTGACTGGGGTAGAAGAG+TGG	+	chr1_1:75444259-75444278	Msa0043960:intron	45.0%
	TTCAGGAATTAGGGTGACTC+CGG	-	chr1_1:75444471-75444490	None:intergenic	45.0%
	AGTCACCCTAATTCCTGAAG+TGG	+	chr1_1:75444472-75444491	Msa0043960:intron	45.0%
	CTAAGCAATTTCGTACCCTC+AGG	-	chr1_1:75444624-75444643	None:intergenic	45.0%
!	CTGAGGGTACGAAATTGCTT+AGG	+	chr1_1:75444622-75444641	Msa0043960:intron	45.0%
	GTACAACATCCTTGAGCACA+AGG	-	chr1_1:75444966-75444985	None:intergenic	45.0%
!	CTTGATTCCATCCGTTTTGG+AGG	+	chr1_1:75444985-75445004	Msa0043960:intron	45.0%
	TCTCACGGTGGACATATTCA+CGG	-	chr1_1:75445215-75445234	None:intergenic	45.0%
	GTGAAACTGATTGGACCAGA+TGG	+	chr1_1:75445388-75445407	Msa0043960:CDS	45.0%
	CCCTGATGACTCTTACATTC+TGG	+	chr1_1:75445432-75445451	Msa0043960:CDS	45.0%
	GCTACCTTATTCATGCAGAG+CGG	+	chr1_1:75445480-75445499	Msa0043960:CDS	45.0%
	CTACCTTATTCATGCAGAGC+GGG	+	chr1_1:75445481-75445500	Msa0043960:CDS	45.0%
	GATGAGCAGCAAATCGAGAA+GGG	+	chr1_1:75445571-75445590	Msa0043960:CDS	45.0%
	AGACATGTTGAGTCTGCAAG+TGG	+	chr1_1:75444042-75444061	Msa0043960:intron	45.0%
	AGGGGAAGAGATAAACAAGG+AGG	+	chr1_1:75444091-75444110	Msa0043960:intron	45.0%
	GGGGAAGAGATAAACAAGGA+GGG	+	chr1_1:75444092-75444111	Msa0043960:intron	45.0%
	GATTCAATGGTACACTGGTG+AGG	+	chr1_1:75444186-75444205	Msa0043960:intron	45.0%
!!	TTTTGACTGGGGTAGAAGAG+TGG	+	chr1_1:75444259-75444278	Msa0043960:intron	45.0%
	TTCAGGAATTAGGGTGACTC+CGG	-	chr1_1:75444471-75444490	None:intergenic	45.0%
	AGTCACCCTAATTCCTGAAG+TGG	+	chr1_1:75444472-75444491	Msa0043960:intron	45.0%
	CTAAGCAATTTCGTACCCTC+AGG	-	chr1_1:75444624-75444643	None:intergenic	45.0%
!	CTGAGGGTACGAAATTGCTT+AGG	+	chr1_1:75444622-75444641	Msa0043960:intron	45.0%
	GTACAACATCCTTGAGCACA+AGG	-	chr1_1:75444966-75444985	None:intergenic	45.0%
!	CTTGATTCCATCCGTTTTGG+AGG	+	chr1_1:75444985-75445004	Msa0043960:intron	45.0%
	TCTCACGGTGGACATATTCA+CGG	-	chr1_1:75445215-75445234	None:intergenic	45.0%
	GTGAAACTGATTGGACCAGA+TGG	+	chr1_1:75445388-75445407	Msa0043960:CDS	45.0%
	CCCTGATGACTCTTACATTC+TGG	+	chr1_1:75445432-75445451	Msa0043960:CDS	45.0%
	GCTACCTTATTCATGCAGAG+CGG	+	chr1_1:75445480-75445499	Msa0043960:CDS	45.0%
	CTACCTTATTCATGCAGAGC+GGG	+	chr1_1:75445481-75445500	Msa0043960:CDS	45.0%
	GATGAGCAGCAAATCGAGAA+GGG	+	chr1_1:75445571-75445590	Msa0043960:CDS	45.0%
	AACAAGGAGGGATTGGGTGA+AGG	+	chr1_1:75444104-75444123	Msa0043960:intron	50.0%
	TCGAGTACTCCTTGTGCTCA+AGG	+	chr1_1:75444954-75444973	Msa0043960:intron	50.0%
	AGCTGTTGAAAGTCTCACGG+TGG	-	chr1_1:75445227-75445246	None:intergenic	50.0%
	AGAGCACAAGATGTCCGAGA+GGG	-	chr1_1:75445268-75445287	None:intergenic	50.0%
	CTGGATTCAGCTGAAGATGC+TGG	+	chr1_1:75445451-75445470	Msa0043960:CDS	50.0%
	TTCAGCTGAAGATGCTGGAG+TGG	+	chr1_1:75445456-75445475	Msa0043960:CDS	50.0%
	GGTGCATGTTCTACTTGTGC+TGG	+	chr1_1:75445502-75445521	Msa0043960:CDS	50.0%
!	TTCTACTTGTGCTGGCCAAG+TGG	+	chr1_1:75445510-75445529	Msa0043960:CDS	50.0%
!	TTGTGCTGGCCAAGTGGTTA+CGG	+	chr1_1:75445516-75445535	Msa0043960:CDS	50.0%
!!	TCTCGATTTGCTGCTCATCG+AGG	-	chr1_1:75445570-75445589	None:intergenic	50.0%
	CGATGAGCAGCAAATCGAGA+AGG	+	chr1_1:75445570-75445589	Msa0043960:CDS	50.0%
	AACAAGGAGGGATTGGGTGA+AGG	+	chr1_1:75444104-75444123	Msa0043960:intron	50.0%
	TCGAGTACTCCTTGTGCTCA+AGG	+	chr1_1:75444954-75444973	Msa0043960:intron	50.0%
	AGCTGTTGAAAGTCTCACGG+TGG	-	chr1_1:75445227-75445246	None:intergenic	50.0%
	AGAGCACAAGATGTCCGAGA+GGG	-	chr1_1:75445268-75445287	None:intergenic	50.0%
	CTGGATTCAGCTGAAGATGC+TGG	+	chr1_1:75445451-75445470	Msa0043960:CDS	50.0%
	TTCAGCTGAAGATGCTGGAG+TGG	+	chr1_1:75445456-75445475	Msa0043960:CDS	50.0%
	GGTGCATGTTCTACTTGTGC+TGG	+	chr1_1:75445502-75445521	Msa0043960:CDS	50.0%
!	TTCTACTTGTGCTGGCCAAG+TGG	+	chr1_1:75445510-75445529	Msa0043960:CDS	50.0%
!	TTGTGCTGGCCAAGTGGTTA+CGG	+	chr1_1:75445516-75445535	Msa0043960:CDS	50.0%
!!	TCTCGATTTGCTGCTCATCG+AGG	-	chr1_1:75445570-75445589	None:intergenic	50.0%
	CGATGAGCAGCAAATCGAGA+AGG	+	chr1_1:75445570-75445589	Msa0043960:CDS	50.0%
	TGTACGGAACAGTGCCCTCT+CGG	+	chr1_1:75445251-75445270	Msa0043960:CDS	55.0%
	CAGAGCACAAGATGTCCGAG+AGG	-	chr1_1:75445269-75445288	None:intergenic	55.0%
	GCACCCGCTCTGCATGAATA+AGG	-	chr1_1:75445487-75445506	None:intergenic	55.0%
!	TGTGCTGGCCAAGTGGTTAC+GGG	+	chr1_1:75445517-75445536	Msa0043960:CDS	55.0%
	CGACAGAACCCGTAACCACT+TGG	-	chr1_1:75445528-75445547	None:intergenic	55.0%
	TGTACGGAACAGTGCCCTCT+CGG	+	chr1_1:75445251-75445270	Msa0043960:CDS	55.0%
	CAGAGCACAAGATGTCCGAG+AGG	-	chr1_1:75445269-75445288	None:intergenic	55.0%
	GCACCCGCTCTGCATGAATA+AGG	-	chr1_1:75445487-75445506	None:intergenic	55.0%
!	TGTGCTGGCCAAGTGGTTAC+GGG	+	chr1_1:75445517-75445536	Msa0043960:CDS	55.0%
	CGACAGAACCCGTAACCACT+TGG	-	chr1_1:75445528-75445547	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	75443813	75445920	75443813	ID=Msa0043960;Name=Msa0043960
chr1_1	mRNA	75443813	75445920	75443813	ID=Msa0043960-mRNA-1;Parent=Msa0043960;Name=Msa0043960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0\|0.5\|0.5\|1\|1\|2\|251\|159
chr1_1	exon	75443813	75443819	75443813	ID=Msa0043960-mRNA-1:exon:25428;Parent=Msa0043960-mRNA-1
chr1_1	exon	75445197	75445920	75445197	ID=Msa0043960-mRNA-1:exon:25429;Parent=Msa0043960-mRNA-1
chr1_1	CDS	75443813	75443819	75443813	ID=Msa0043960-mRNA-1:cds;Parent=Msa0043960-mRNA-1
chr1_1	CDS	75445197	75445669	75445197	ID=Msa0043960-mRNA-1:cds;Parent=Msa0043960-mRNA-1
chr1_1	three_prime_UTR	75445670	75445920	75445670	ID=Msa0043960-mRNA-1:three_prime_utr;Parent=Msa0043960-mRNA-1

Gene Sequence

>Msa0043960

ATGGAAAGTATAAAAATGTCAGCCGTGAATATGTCCACCGTGAGACTTTCAACAGCTTCATTGTACGGAACAGTGCCCTCTCGGACATCTTGTGCTCTGATGAAGAGTCCATCAAGTTTGAGATCTGTGAAGAATGTGTCCAAAACATTTGGACTAAAATCTTCATCATTTAGAGTATCTGCAATGGCAGTATACAAAGTGAAACTGATTGGACCAGATGGAACAGAGAACGAATTTGATGCCCCTGATGACTCTTACATTCTGGATTCAGCTGAAGATGCTGGAGTGGAGCTACCTTATTCATGCAGAGCGGGTGCATGTTCTACTTGTGCTGGCCAAGTGGTTACGGGTTCTGTCGATCAGTCTGATCAATCTTTCCTCGATGAGCAGCAAATCGAGAAGGGTTATCTTCTCACTTGTGTCTCATACCCAAAATCAGATACTGTGATTTACACACACAAGGAGGAAGAACTCTACTAA

Protein sequence

>Msa0043960

MESIKMSAVNMSTVRLSTASLYGTVPSRTSCALMKSPSSLRSVKNVSKTFGLKSSSFRVSAMAVYKVKLIGPDGTENEFDAPDDSYILDSAEDAGVELPYSCRAGACSTCAGQVVTGSVDQSDQSFLDEQQIEKGYLLTCVSYPKSDTVIYTHKEEELY*