AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0860510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860510 MtrunA17_Chr5g0439641 85.526 456 65 1 1 456 1 455 0.0 812
Msa0860510 MtrunA17_Chr5g0439721 64.680 453 144 6 1 453 1 437 0.0 595
Msa0860510 MtrunA17_Chr5g0440401 63.514 222 81 0 235 456 1 222 7.81e-101 300
Msa0860510 MtrunA17_Chr5g0439681 74.194 186 47 1 271 455 130 315 3.37e-94 287
Msa0860510 MtrunA17_Chr5g0439661 67.188 192 62 1 5 196 1 191 4.63e-90 272
Msa0860510 MtrunA17_Chr5g0401791 33.974 468 276 13 6 453 77 531 4.88e-75 244
Msa0860510 MtrunA17_Chr8g0354871 50.000 240 95 4 230 454 158 387 3.58e-70 227
Msa0860510 MtrunA17_Chr8g0354871 56.716 67 13 2 124 190 1 51 3.85e-11 64.7
Msa0860510 MtrunA17_Chr5g0440391 73.109 119 30 2 1 119 1 117 1.90e-55 180
Msa0860510 MtrunA17_Chr8g0335021 28.821 458 263 15 30 451 25 455 1.52e-45 164
Msa0860510 MtrunA17_Chr7g0265891 29.206 428 268 12 34 452 53 454 3.67e-45 163
Msa0860510 MtrunA17_Chr8g0334971 28.795 448 268 13 18 441 14 434 4.06e-44 160
Msa0860510 MtrunA17_Chr8g0335061 27.171 449 276 14 25 449 20 441 5.80e-43 157
Msa0860510 MtrunA17_Chr2g0300311 29.638 469 247 17 7 445 30 445 3.54e-41 153
Msa0860510 MtrunA17_Chr6g0452601 25.858 437 286 12 27 453 15 423 1.52e-40 150
Msa0860510 MtrunA17_Chr6g0457371 27.830 424 262 14 34 453 27 410 1.56e-40 149
Msa0860510 MtrunA17_Chr2g0297831 29.095 464 255 19 7 445 47 461 4.07e-40 150
Msa0860510 MtrunA17_Chr6g0452611 28.029 421 267 10 30 448 22 408 2.03e-39 146
Msa0860510 MtrunA17_Chr6g0452551 26.478 423 270 12 30 448 23 408 2.30e-39 146
Msa0860510 MtrunA17_Chr8g0334951 26.667 435 269 12 25 439 22 426 1.34e-38 145
Msa0860510 MtrunA17_Chr7g0238511 29.691 421 242 17 49 448 46 433 3.74e-38 144
Msa0860510 MtrunA17_Chr6g0452561 25.754 431 272 11 34 448 27 425 5.55e-37 140
Msa0860510 MtrunA17_Chr6g0452531 25.747 435 283 11 27 454 15 416 2.82e-36 138
Msa0860510 MtrunA17_Chr6g0452161 27.842 431 272 12 34 455 27 427 5.37e-36 137
Msa0860510 MtrunA17_Chr6g0452501 25.754 431 285 9 25 453 18 415 7.81e-36 137
Msa0860510 MtrunA17_Chr8g0354881 61.616 99 37 1 4 102 13 110 8.23e-36 128
Msa0860510 MtrunA17_Chr7g0238111 28.261 460 258 18 23 455 21 435 3.55e-35 135
Msa0860510 MtrunA17_Chr6g0452591 25.696 467 282 14 1 453 30 445 5.32e-35 135
Msa0860510 MtrunA17_Chr8g0352511 28.166 458 264 19 32 444 29 466 5.75e-35 135
Msa0860510 MtrunA17_Chr8g0335011 24.528 477 296 11 25 448 29 494 3.01e-34 134
Msa0860510 MtrunA17_Chr7g0238231 27.371 464 253 13 49 449 46 488 3.83e-34 133
Msa0860510 MtrunA17_Chr8g0334911 26.218 431 266 14 29 437 25 425 1.61e-33 130
Msa0860510 MtrunA17_Chr8g0335071 25.991 454 275 16 33 454 38 462 1.79e-33 131
Msa0860510 MtrunA17_Chr6g0452571 29.275 345 197 11 120 455 49 355 2.82e-33 129
Msa0860510 MtrunA17_Chr3g0138001 26.813 455 289 13 12 454 4 426 3.86e-33 131
Msa0860510 MtrunA17_Chr8g0354591 27.155 464 259 19 32 447 24 456 4.50e-33 130
Msa0860510 MtrunA17_Chr7g0238241 28.894 443 249 13 49 448 45 464 1.57e-31 125
Msa0860510 MtrunA17_Chr7g0238131 27.586 435 250 17 54 447 1 411 7.87e-31 123
Msa0860510 MtrunA17_Chr7g0238101 28.041 485 252 19 28 447 23 475 1.22e-30 123
Msa0860510 MtrunA17_Chr5g0439691 56.250 112 38 2 165 276 2 102 1.02e-29 111
Msa0860510 MtrunA17_Chr7g0238211 38.333 180 101 4 277 449 5 181 1.41e-29 114
Msa0860510 MtrunA17_Chr8g0354581 26.940 464 267 19 32 447 24 463 6.53e-29 118
Msa0860510 MtrunA17_Chr7g0238251 25.918 490 262 14 31 449 29 488 3.32e-28 116
Msa0860510 MtrunA17_Chr2g0296801 31.579 171 116 1 276 445 175 345 4.23e-27 111
Msa0860510 MtrunA17_Chr6g0452541 33.333 189 123 3 268 453 51 239 6.70e-27 108
Msa0860510 MtrunA17_Chr7g0218171 32.584 178 118 2 278 453 125 302 1.11e-26 109
Msa0860510 MtrunA17_Chr7g0238051 34.359 195 115 4 258 447 175 361 1.95e-26 109
Msa0860510 MtrunA17_Chr7g0238091 36.158 177 105 5 277 447 41 215 7.34e-26 105
Msa0860510 MtrunA17_Chr8g0352491 34.884 172 93 5 291 444 10 180 4.10e-24 99.0
Msa0860510 MtrunA17_Chr7g0238191 26.419 458 268 16 23 448 16 436 2.59e-23 102
Msa0860510 MtrunA17_Chr7g0238181 27.434 339 202 11 124 455 57 358 2.87e-23 100
Msa0860510 MtrunA17_Chr1g0170351 25.200 500 251 24 30 453 25 477 4.72e-23 101
Msa0860510 MtrunA17_Chr7g0238141 25.935 428 261 11 49 448 45 444 7.97e-23 100
Msa0860510 MtrunA17_Chr7g0238171 35.227 176 107 4 277 447 342 515 8.19e-23 101
Msa0860510 MtrunA17_Chr7g0232521 36.416 173 104 3 277 444 42 213 1.44e-21 92.8
Msa0860510 MtrunA17_Chr2g0297821 32.044 181 114 5 275 447 1 180 1.66e-21 91.7
Msa0860510 MtrunA17_Chr7g0238081 33.898 177 103 4 277 448 5 172 2.86e-21 90.9
Msa0860510 MtrunA17_Chr3g0118601 30.588 170 114 3 278 444 277 445 1.14e-20 94.4
Msa0860510 MtrunA17_Chr8g0354621 35.135 148 81 3 314 447 4 150 1.48e-20 88.2
Msa0860510 MtrunA17_Chr7g0238281 34.091 176 109 4 277 447 6 179 1.00e-17 80.9
Msa0860510 MtrunA17_Chr4g0002901 30.097 206 126 8 260 454 361 559 5.60e-17 83.6
Msa0860510 MtrunA17_Chr4g0002901 30.909 165 104 6 33 192 43 202 4.64e-11 65.1
Msa0860510 MtrunA17_Chr4g0002911 29.557 203 125 8 263 454 362 557 9.37e-16 79.7
Msa0860510 MtrunA17_Chr4g0002911 30.556 216 129 7 33 240 43 245 3.97e-13 71.2
Msa0860510 MtrunA17_Chr7g0242181 29.500 200 100 8 7 188 17 193 3.00e-13 71.6
Msa0860510 MtrunA17_Chr4g0006121 25.000 256 136 9 234 448 66 306 1.48e-12 68.2
Msa0860510 MtrunA17_Chr7g0242151 29.341 167 100 5 30 188 27 183 1.81e-12 69.3
Msa0860510 MtrunA17_Chr4g0002861 29.000 200 134 5 259 452 360 557 1.88e-12 69.3
Msa0860510 MtrunA17_Chr4g0002861 29.224 219 130 9 33 241 43 246 4.80e-12 68.2
Msa0860510 MtrunA17_Chr7g0242071 28.994 169 94 4 30 188 27 179 3.98e-12 68.2
Msa0860510 MtrunA17_Chr7g0220521 26.842 190 132 4 259 444 350 536 5.58e-12 67.8
Msa0860510 MtrunA17_Chr7g0220521 28.571 168 110 5 33 195 42 204 5.46e-11 64.7
Msa0860510 MtrunA17_Chr3g0091831 22.222 396 248 16 23 386 34 401 3.63e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860510 AT3G50120.1 35.747 442 254 12 29 453 100 528 1.24e-83 267
Msa0860510 AT3G50170.1 35.000 460 265 13 9 453 96 536 2.33e-81 261
Msa0860510 AT3G50140.1 32.684 462 282 11 5 453 91 536 4.45e-80 258
Msa0860510 AT3G50150.1 35.227 440 250 10 29 453 87 506 1.45e-79 256
Msa0860510 AT3G50160.1 33.929 448 264 11 7 453 82 498 3.12e-78 252
Msa0860510 AT3G50180.1 32.473 465 268 11 1 452 153 584 5.33e-73 241
Msa0860510 AT3G50130.1 33.406 458 272 15 9 452 122 560 2.67e-71 236
Msa0860510 AT3G50190.1 29.890 455 279 12 5 455 74 492 2.61e-63 213
Msa0860510 AT4G31980.1 32.220 419 244 12 31 445 292 674 2.72e-55 195
Msa0860510 AT2G36430.1 30.986 426 267 10 33 454 46 448 1.77e-52 183
Msa0860510 AT3G47250.3 29.501 461 291 16 8 453 36 477 6.10e-52 182
Msa0860510 AT3G47250.2 29.501 461 291 16 8 453 36 477 6.10e-52 182
Msa0860510 AT3G47250.1 29.501 461 291 16 8 453 36 477 6.10e-52 182
Msa0860510 AT5G22540.1 29.754 447 279 14 16 453 15 435 2.98e-51 179
Msa0860510 AT3G47200.1 29.530 447 278 16 20 451 34 458 8.89e-46 166
Msa0860510 AT3G47200.2 29.530 447 278 16 20 451 34 458 8.89e-46 166
Msa0860510 AT5G11290.2 28.571 413 263 11 34 445 35 416 4.74e-44 160
Msa0860510 AT5G22550.2 27.623 467 266 15 34 453 46 487 1.19e-43 160
Msa0860510 AT3G50140.2 30.383 339 207 11 7 333 93 414 8.17e-43 156
Msa0860510 AT3G44710.1 28.395 486 277 19 20 453 35 501 1.10e-42 158
Msa0860510 AT3G50170.2 32.817 323 184 12 9 317 96 399 3.35e-41 152
Msa0860510 AT3G50150.2 29.570 372 209 12 6 351 66 410 2.39e-38 145
Msa0860510 AT5G22560.1 25.620 484 278 15 34 453 49 514 5.38e-38 145
Msa0860510 AT3G50190.4 29.846 325 191 11 7 331 76 363 4.38e-37 140
Msa0860510 AT3G50190.3 29.846 325 191 11 7 331 76 363 4.38e-37 140
Msa0860510 AT3G50190.2 30.323 310 180 10 7 316 76 349 6.74e-37 139
Msa0860510 AT3G47210.1 27.869 427 273 14 9 430 70 466 1.03e-36 140
Msa0860510 AT2G28580.6 27.650 434 270 12 34 450 43 449 1.35e-35 137
Msa0860510 AT2G28580.1 27.650 434 270 12 34 450 111 517 2.91e-35 137
Msa0860510 AT2G28580.2 27.650 434 270 12 34 450 125 531 3.42e-35 137
Msa0860510 AT2G28580.4 27.488 422 269 12 34 450 125 514 1.69e-34 135
Msa0860510 AT2G28580.5 27.488 422 269 12 34 450 111 500 1.90e-34 135
Msa0860510 AT2G44930.1 27.815 453 260 18 34 455 86 502 3.90e-34 134
Msa0860510 AT5G11290.1 27.321 377 243 10 70 445 1 347 8.65e-33 127
Msa0860510 AT5G22550.1 25.054 463 234 14 34 453 46 438 8.93e-33 129
Msa0860510 AT1G67150.4 25.740 439 270 16 30 450 4 404 5.19e-30 121
Msa0860510 AT1G67150.1 25.740 439 270 16 30 450 4 404 5.19e-30 121
Msa0860510 AT1G67150.2 25.508 443 270 16 30 450 4 408 2.21e-29 119
Msa0860510 AT2G28580.3 26.542 373 230 12 34 388 125 471 1.05e-23 103
Msa0860510 AT1G65985.1 23.904 456 253 16 27 426 9 426 8.51e-23 100
Msa0860510 AT1G65985.2 23.904 456 253 16 27 426 9 426 8.51e-23 100
Msa0860510 AT1G67150.3 23.516 438 238 14 30 450 4 361 7.06e-22 97.1
Msa0860510 AT3G60470.1 33.146 178 117 2 278 454 364 540 4.68e-20 93.2
Msa0860510 AT3G02645.1 27.011 174 123 2 258 427 325 498 1.92e-15 79.0
Msa0860510 AT3G44695.1 23.497 183 136 3 275 453 27 209 3.05e-12 66.2

Find 95 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATCATTTCAATGAATTT+TGG 0.154210 5_4:-59276367 None:intergenic
GGGGAAATGTATGCATATTT+TGG 0.178569 5_4:+59277583 Msa0860510:CDS
TTTGGTCCTTATTACCATTA+TGG 0.187428 5_4:+59276178 Msa0860510:CDS
TCTTGATGGTTGTTTCATTT+TGG 0.199274 5_4:+59276390 Msa0860510:CDS
CTTGGGGTTTGAAGGCATTT+TGG 0.201739 5_4:-59276147 None:intergenic
ACAAGTCACTTGATCCAATT+TGG 0.235857 5_4:+59276332 Msa0860510:CDS
GGAGGAGAATTTAAAGCTTA+TGG 0.239916 5_4:+59276201 Msa0860510:CDS
GGTGTGTTGTTTGTCCAAAT+TGG 0.287142 5_4:-59276346 None:intergenic
GTTCAAATGCAATGAGATTA+AGG 0.289752 5_4:-59277856 None:intergenic
TGTACTGTCATCTAATTTCA+TGG 0.291456 5_4:-59277822 None:intergenic
TTGGTCCTTATTACCATTAT+GGG 0.293233 5_4:+59276179 Msa0860510:CDS
TCCTCCCCATAATGGTAATA+AGG 0.297104 5_4:-59276184 None:intergenic
GCGATCCATGGAAATTTCTT+TGG 0.298736 5_4:-59278038 None:intergenic
TGCTCAATTGTTCAACTCAT+TGG 0.355403 5_4:+59278015 Msa0860510:CDS
CATTCCCAAGAGCATTGATT+AGG 0.356438 5_4:-59277982 None:intergenic
TCCTTCTCATGAGCTATTGT+AGG 0.360207 5_4:-59276070 None:intergenic
AGCATGTCACGCTTTATATA+TGG 0.364935 5_4:-59276505 None:intergenic
ATTGAAATGATGATTCTTGA+TGG 0.377780 5_4:+59276376 Msa0860510:CDS
GTACGAGTCTCTCAACTCTT+TGG 0.379734 5_4:-59276311 None:intergenic
TTAAATTCTCCTCCCCATAA+TGG 0.380138 5_4:-59276192 None:intergenic
CGTTGGAATAACAACTCAAT+AGG 0.398267 5_4:-59276274 None:intergenic
AAACCCCAAGCAATTTCCTT+TGG 0.409307 5_4:+59276160 Msa0860510:CDS
AAGAAGAAAATCGAAGAGTT+GGG 0.409513 5_4:+59277563 Msa0860510:CDS
GAGGGTACTTTGTAAATTGA+AGG 0.411214 5_4:-59276106 None:intergenic
AAGGAGGTATCCTTCATGAT+TGG 0.412501 5_4:-59277536 None:intergenic
GGAAATTGCTTGGGGTTTGA+AGG 0.414602 5_4:-59276155 None:intergenic
TGAAGCTTACTCCAGCCTCT+TGG 0.417799 5_4:-59277736 None:intergenic
AGGACCAAAGGAAATTGCTT+GGG 0.418110 5_4:-59276164 None:intergenic
GGGATCCTAATCAATGCTCT+TGG 0.431163 5_4:+59277977 Msa0860510:CDS
ATCCCACTTCGACTGAGAAA+TGG 0.438339 5_4:-59277959 None:intergenic
CAAGAAGAAAATCGAAGAGT+TGG 0.442960 5_4:+59277562 Msa0860510:CDS
GATCGAAGGAAACGTCTTGG+AGG 0.445532 5_4:-59277778 None:intergenic
AGCTCATGAGAAGGAACAAT+GGG 0.450143 5_4:+59276078 Msa0860510:CDS
GAATAACAGTAAGAGCAAAA+AGG 0.453820 5_4:-59278195 None:intergenic
TCATTCTTATCATAGTCAAT+CGG 0.460865 5_4:-59276445 None:intergenic
CATTCTTATCATAGTCAATC+GGG 0.465502 5_4:-59276444 None:intergenic
TTCATGATTGGGAATGGCCA+TGG 0.466871 5_4:-59277524 None:intergenic
GCAATGGAGCTCCAAGAGGC+TGG 0.474190 5_4:+59277725 Msa0860510:CDS
AGGAGGTATCCTTCATGATT+GGG 0.478474 5_4:-59277535 None:intergenic
CTGTCATCTAATTTCATGGC+CGG 0.481878 5_4:-59277818 None:intergenic
GATAAGAATGATCATGTGTT+TGG 0.482566 5_4:+59276457 Msa0860510:CDS
AATGTATGAAGAACCGTCAT+AGG 0.496770 5_4:-59276547 None:intergenic
AGCTGGTCAATACTATCAAA+AGG 0.496857 5_4:+59278231 Msa0860510:CDS
GGATCCTAATCAATGCTCTT+GGG 0.503806 5_4:+59277978 Msa0860510:CDS
TGGCCACTTGATTCAAGCGT+TGG 0.507528 5_4:-59276291 None:intergenic
GAACGTCTCCACGTTGGAGC+TGG 0.513702 5_4:+59277875 Msa0860510:CDS
AAGTTCTCCATCGCGATCCA+TGG 0.513748 5_4:-59278050 None:intergenic
TCATAAAATTTCTTAACCCA+TGG 0.516784 5_4:+59277507 Msa0860510:CDS
AAGGACCAAAGGAAATTGCT+TGG 0.525829 5_4:-59276165 None:intergenic
GATCATGTGTTTGGTGAACA+TGG 0.539005 5_4:+59276466 Msa0860510:CDS
CTCGATCGAAGGAAACGTCT+TGG 0.541118 5_4:-59277781 None:intergenic
TCATGATTGGGAATGGCCAT+GGG 0.543094 5_4:-59277523 None:intergenic
GTAGAAAACCCTGGAAAAGT+TGG 0.544452 5_4:+59278104 Msa0860510:CDS
TGGTCCTTATTACCATTATG+GGG 0.545288 5_4:+59276180 Msa0860510:CDS
TTATCTTATTCGATCTGCAA+TGG 0.546155 5_4:+59277709 Msa0860510:CDS
GTCCAACTCCGTGACTTGTG+AGG 0.551771 5_4:-59276125 None:intergenic
ATTGGCCAAAGAAATTTCCA+TGG 0.557444 5_4:+59278033 Msa0860510:CDS
CACCATCATCGACACTGCTA+AGG 0.559015 5_4:+59277931 Msa0860510:CDS
TGTCATCTAATTTCATGGCC+GGG 0.559673 5_4:-59277817 None:intergenic
ATCCTTAGCAGTGTCGATGA+TGG 0.562676 5_4:-59277933 None:intergenic
ATTCCAACGCTTGAATCAAG+TGG 0.566802 5_4:+59276288 Msa0860510:CDS
TCGAGGTGTTCTTAGACTCC+CGG 0.578966 5_4:+59277799 Msa0860510:CDS
GTATCCTTCATGATTGGGAA+TGG 0.579571 5_4:-59277530 None:intergenic
TTCCATTTCTCAGTCGAAGT+GGG 0.580235 5_4:+59277957 Msa0860510:CDS
CAAAGTACCCTCACAAGTCA+CGG 0.580405 5_4:+59276117 Msa0860510:CDS
ATTCAGACTATATACACAGC+TGG 0.584635 5_4:+59278214 Msa0860510:CDS
ACCCTCACAAGTCACGGAGT+TGG 0.588381 5_4:+59276123 Msa0860510:CDS
GGACCAAAGGAAATTGCTTG+GGG 0.594003 5_4:-59276163 None:intergenic
TCCAACTCCGTGACTTGTGA+GGG 0.598517 5_4:-59276124 None:intergenic
AGAAGAAAATCGAAGAGTTG+GGG 0.601535 5_4:+59277564 Msa0860510:CDS
TAGCTCATGAGAAGGAACAA+TGG 0.605621 5_4:+59276077 Msa0860510:CDS
TCTAAGAACACCTCGATCGA+AGG 0.606026 5_4:-59277792 None:intergenic
GTTCCATTTCTCAGTCGAAG+TGG 0.609730 5_4:+59277956 Msa0860510:CDS
ATAATGGTAATAAGGACCAA+AGG 0.614397 5_4:-59276176 None:intergenic
TCCTTATTACCATTATGGGG+AGG 0.615898 5_4:+59276183 Msa0860510:CDS
ATGGCCATTCCCAATCATGA+AGG 0.618512 5_4:+59277526 Msa0860510:CDS
CAAGACGTTTCCTTCGATCG+AGG 0.619027 5_4:+59277782 Msa0860510:CDS
GCTTCAAGAAAAGCGAAACA+AGG 0.619990 5_4:+59277753 Msa0860510:CDS
TCCTACAATAGCTCATGAGA+AGG 0.627480 5_4:+59276069 Msa0860510:CDS
GAAATTTCCATGGATCGCGA+TGG 0.630278 5_4:+59278043 Msa0860510:CDS
GCATTTGAACGTCTCCACGT+TGG 0.633567 5_4:+59277869 Msa0860510:CDS
ACATGGAGTTAGAAATCAAG+TGG 0.634087 5_4:+59276011 None:intergenic
AATGAAGAGATGAAGAACAA+TGG 0.634106 5_4:+59276046 Msa0860510:CDS
AGCACTACTGTAGAAAACCC+TGG 0.644845 5_4:+59278095 Msa0860510:CDS
ATGGAGAACTTGAGATGGTG+AGG 0.645009 5_4:+59278062 Msa0860510:CDS
TGAGAATCAGATACCTATGA+CGG 0.647100 5_4:+59276534 Msa0860510:CDS
ATCTGCAATGGAGCTCCAAG+AGG 0.651366 5_4:+59277721 Msa0860510:CDS
TCGCGATGGAGAACTTGAGA+TGG 0.652534 5_4:+59278057 Msa0860510:CDS
GTTTGAAATCAACATTGTGG+AGG 0.654113 5_4:+59276576 Msa0860510:CDS
ACAAGAGACACCATAGCCCA+AGG 0.660534 5_4:-59278160 None:intergenic
CCACGTTGGAGCTGGTAACG+AGG 0.664570 5_4:+59277883 Msa0860510:CDS
ATCATGTGTTTGGTGAACAT+GGG 0.674935 5_4:+59276467 Msa0860510:CDS
TGAGTTTGAAATCAACATTG+TGG 0.693644 5_4:+59276573 Msa0860510:CDS
TGGAGAACTTGAGATGGTGA+GGG 0.695825 5_4:+59278063 Msa0860510:CDS
CCTCGTTACCAGCTCCAACG+TGG 0.696903 5_4:-59277883 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAATAGGAAAAATAA+TGG - chr5_4:59277384-59277403 None:intergenic 10.0%
!! TAATTAAATAGGAAAAATAA+TGG - chr5_4:59277384-59277403 None:intergenic 10.0%
!! ATAATGAAACTTTATAATCT+AGG - chr5_4:59276675-59276694 None:intergenic 15.0%
!! TCTAATCTTTAAATACAAAA+TGG - chr5_4:59276765-59276784 None:intergenic 15.0%
!! AGCTATAAACATAATTAAAT+AGG - chr5_4:59277395-59277414 None:intergenic 15.0%
!!! AAGAAATTTGTTAAATTTTG+AGG + chr5_4:59277673-59277692 Msa0860510:CDS 15.0%
!!! AACATCTTTTATATGTTTTA+TGG + chr5_4:59277907-59277926 Msa0860510:CDS 15.0%
!! ATAATGAAACTTTATAATCT+AGG - chr5_4:59276675-59276694 None:intergenic 15.0%
!! TCTAATCTTTAAATACAAAA+TGG - chr5_4:59276765-59276784 None:intergenic 15.0%
!! AGCTATAAACATAATTAAAT+AGG - chr5_4:59277395-59277414 None:intergenic 15.0%
!!! AAGAAATTTGTTAAATTTTG+AGG + chr5_4:59277673-59277692 Msa0860510:CDS 15.0%
!!! AACATCTTTTATATGTTTTA+TGG + chr5_4:59277907-59277926 Msa0860510:CDS 15.0%
!!! TCTCTTTAAAAAATGAAGAA+GGG - chr5_4:59276245-59276264 None:intergenic 20.0%
!!! ATCTCTTTAAAAAATGAAGA+AGG - chr5_4:59276246-59276265 None:intergenic 20.0%
!!! ATCATCATTTCAATGAATTT+TGG - chr5_4:59276370-59276389 None:intergenic 20.0%
!!! GTAATTGATTTGTAAAATGT+TGG - chr5_4:59276643-59276662 None:intergenic 20.0%
!! AATAATGTATATTGTCAACT+AGG + chr5_4:59277000-59277019 Msa0860510:intron 20.0%
!!! AGTAGTACAATCTTTTTTTT+TGG - chr5_4:59277192-59277211 None:intergenic 20.0%
!!! CAATTTTATATGAAACATAC+AGG + chr5_4:59277454-59277473 Msa0860510:intron 20.0%
!!! TTTCTTTTTGATTCTTTTAG+CGG - chr5_4:59277659-59277678 None:intergenic 20.0%
!!! TCTCTTTAAAAAATGAAGAA+GGG - chr5_4:59276245-59276264 None:intergenic 20.0%
!!! ATCTCTTTAAAAAATGAAGA+AGG - chr5_4:59276246-59276265 None:intergenic 20.0%
!!! ATCATCATTTCAATGAATTT+TGG - chr5_4:59276370-59276389 None:intergenic 20.0%
!!! GTAATTGATTTGTAAAATGT+TGG - chr5_4:59276643-59276662 None:intergenic 20.0%
!! AATAATGTATATTGTCAACT+AGG + chr5_4:59277000-59277019 Msa0860510:intron 20.0%
!!! AGTAGTACAATCTTTTTTTT+TGG - chr5_4:59277192-59277211 None:intergenic 20.0%
!!! CAATTTTATATGAAACATAC+AGG + chr5_4:59277454-59277473 Msa0860510:intron 20.0%
!!! TTTCTTTTTGATTCTTTTAG+CGG - chr5_4:59277659-59277678 None:intergenic 20.0%
!!! CTTCATTTTTTAAAGAGATG+TGG + chr5_4:59276247-59276266 Msa0860510:CDS 25.0%
! ATTGAAATGATGATTCTTGA+TGG + chr5_4:59276376-59276395 Msa0860510:CDS 25.0%
!!! TTTCATTTTGGAGATTTTGA+GGG + chr5_4:59276402-59276421 Msa0860510:CDS 25.0%
! TCATTCTTATCATAGTCAAT+CGG - chr5_4:59276448-59276467 None:intergenic 25.0%
! CAAAGATAAAACATATGCAT+TGG - chr5_4:59276839-59276858 None:intergenic 25.0%
! AATATCATGTAAGATGTTGT+TGG - chr5_4:59276931-59276950 None:intergenic 25.0%
! TGTGAATGAGTAGAAAAATA+TGG + chr5_4:59276960-59276979 Msa0860510:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr5_4:59277146-59277165 None:intergenic 25.0%
! CATTCATTTAATGATGTATG+TGG + chr5_4:59277072-59277091 Msa0860510:intron 25.0%
! CATTCATTTAATGATGTATG+TGG - chr5_4:59277072-59277091 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr5_4:59277146-59277165 Msa0860510:intron 25.0%
! CCTTGAGTATAAAAATTCAA+AGG - chr5_4:59277338-59277357 None:intergenic 25.0%
!! CCTTTGAATTTTTATACTCA+AGG + chr5_4:59277335-59277354 Msa0860510:intron 25.0%
!! TAGAAAAATGTTGTGTTGAT+TGG + chr5_4:59277416-59277435 Msa0860510:intron 25.0%
! TCATAAAATTTCTTAACCCA+TGG + chr5_4:59277507-59277526 Msa0860510:CDS 25.0%
!! TACAGAAAAAGTATGATACA+AGG + chr5_4:59277611-59277630 Msa0860510:CDS 25.0%
!!! TTCTTTTTGATTCTTTTAGC+GGG - chr5_4:59277658-59277677 None:intergenic 25.0%
!!! CACTTATTTTAGAAATCCTT+GGG + chr5_4:59278144-59278163 Msa0860510:CDS 25.0%
!!! CTTCATTTTTTAAAGAGATG+TGG + chr5_4:59276247-59276266 Msa0860510:CDS 25.0%
! ATTGAAATGATGATTCTTGA+TGG + chr5_4:59276376-59276395 Msa0860510:CDS 25.0%
!!! TTTCATTTTGGAGATTTTGA+GGG + chr5_4:59276402-59276421 Msa0860510:CDS 25.0%
! TCATTCTTATCATAGTCAAT+CGG - chr5_4:59276448-59276467 None:intergenic 25.0%
! CAAAGATAAAACATATGCAT+TGG - chr5_4:59276839-59276858 None:intergenic 25.0%
! AATATCATGTAAGATGTTGT+TGG - chr5_4:59276931-59276950 None:intergenic 25.0%
! TGTGAATGAGTAGAAAAATA+TGG + chr5_4:59276960-59276979 Msa0860510:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr5_4:59277146-59277165 None:intergenic 25.0%
! CATTCATTTAATGATGTATG+TGG + chr5_4:59277072-59277091 Msa0860510:intron 25.0%
! CATTCATTTAATGATGTATG+TGG - chr5_4:59277072-59277091 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr5_4:59277146-59277165 Msa0860510:intron 25.0%
! CCTTGAGTATAAAAATTCAA+AGG - chr5_4:59277338-59277357 None:intergenic 25.0%
!! CCTTTGAATTTTTATACTCA+AGG + chr5_4:59277335-59277354 Msa0860510:intron 25.0%
!! TAGAAAAATGTTGTGTTGAT+TGG + chr5_4:59277416-59277435 Msa0860510:intron 25.0%
! TCATAAAATTTCTTAACCCA+TGG + chr5_4:59277507-59277526 Msa0860510:CDS 25.0%
!! TACAGAAAAAGTATGATACA+AGG + chr5_4:59277611-59277630 Msa0860510:CDS 25.0%
!!! TTCTTTTTGATTCTTTTAGC+GGG - chr5_4:59277658-59277677 None:intergenic 25.0%
!!! CACTTATTTTAGAAATCCTT+GGG + chr5_4:59278144-59278163 Msa0860510:CDS 25.0%
AATGAAGAGATGAAGAACAA+TGG + chr5_4:59276046-59276065 Msa0860510:CDS 30.0%
ATAATGGTAATAAGGACCAA+AGG - chr5_4:59276179-59276198 None:intergenic 30.0%
TTTGGTCCTTATTACCATTA+TGG + chr5_4:59276178-59276197 Msa0860510:CDS 30.0%
TTGGTCCTTATTACCATTAT+GGG + chr5_4:59276179-59276198 Msa0860510:CDS 30.0%
!! TCTTGATGGTTGTTTCATTT+TGG + chr5_4:59276390-59276409 Msa0860510:CDS 30.0%
!! GTTTCATTTTGGAGATTTTG+AGG + chr5_4:59276401-59276420 Msa0860510:CDS 30.0%
CATTCTTATCATAGTCAATC+GGG - chr5_4:59276447-59276466 None:intergenic 30.0%
GATAAGAATGATCATGTGTT+TGG + chr5_4:59276457-59276476 Msa0860510:CDS 30.0%
! TGAGTTTGAAATCAACATTG+TGG + chr5_4:59276573-59276592 Msa0860510:CDS 30.0%
! ACTTTATAATCTAGGACGAA+CGG - chr5_4:59276667-59276686 None:intergenic 30.0%
AAAGGAAAAATTGTGTCTCA+AGG - chr5_4:59277320-59277339 None:intergenic 30.0%
! TTCGATTTTCTTCTTGAACA+AGG - chr5_4:59277558-59277577 None:intergenic 30.0%
AAGAAGAAAATCGAAGAGTT+GGG + chr5_4:59277563-59277582 Msa0860510:CDS 30.0%
!! TCTTTTTGATTCTTTTAGCG+GGG - chr5_4:59277657-59277676 None:intergenic 30.0%
TTATCTTATTCGATCTGCAA+TGG + chr5_4:59277709-59277728 Msa0860510:CDS 30.0%
TGTACTGTCATCTAATTTCA+TGG - chr5_4:59277825-59277844 None:intergenic 30.0%
GTTCAAATGCAATGAGATTA+AGG - chr5_4:59277859-59277878 None:intergenic 30.0%
!!! GCACTTATTTTAGAAATCCT+TGG + chr5_4:59278143-59278162 Msa0860510:CDS 30.0%
GAATAACAGTAAGAGCAAAA+AGG - chr5_4:59278198-59278217 None:intergenic 30.0%
AATGAAGAGATGAAGAACAA+TGG + chr5_4:59276046-59276065 Msa0860510:CDS 30.0%
ATAATGGTAATAAGGACCAA+AGG - chr5_4:59276179-59276198 None:intergenic 30.0%
TTTGGTCCTTATTACCATTA+TGG + chr5_4:59276178-59276197 Msa0860510:CDS 30.0%
TTGGTCCTTATTACCATTAT+GGG + chr5_4:59276179-59276198 Msa0860510:CDS 30.0%
!! TCTTGATGGTTGTTTCATTT+TGG + chr5_4:59276390-59276409 Msa0860510:CDS 30.0%
!! GTTTCATTTTGGAGATTTTG+AGG + chr5_4:59276401-59276420 Msa0860510:CDS 30.0%
CATTCTTATCATAGTCAATC+GGG - chr5_4:59276447-59276466 None:intergenic 30.0%
GATAAGAATGATCATGTGTT+TGG + chr5_4:59276457-59276476 Msa0860510:CDS 30.0%
! TGAGTTTGAAATCAACATTG+TGG + chr5_4:59276573-59276592 Msa0860510:CDS 30.0%
! ACTTTATAATCTAGGACGAA+CGG - chr5_4:59276667-59276686 None:intergenic 30.0%
AAAGGAAAAATTGTGTCTCA+AGG - chr5_4:59277320-59277339 None:intergenic 30.0%
! TTCGATTTTCTTCTTGAACA+AGG - chr5_4:59277558-59277577 None:intergenic 30.0%
AAGAAGAAAATCGAAGAGTT+GGG + chr5_4:59277563-59277582 Msa0860510:CDS 30.0%
!! TCTTTTTGATTCTTTTAGCG+GGG - chr5_4:59277657-59277676 None:intergenic 30.0%
TTATCTTATTCGATCTGCAA+TGG + chr5_4:59277709-59277728 Msa0860510:CDS 30.0%
TGTACTGTCATCTAATTTCA+TGG - chr5_4:59277825-59277844 None:intergenic 30.0%
GTTCAAATGCAATGAGATTA+AGG - chr5_4:59277859-59277878 None:intergenic 30.0%
!!! GCACTTATTTTAGAAATCCT+TGG + chr5_4:59278143-59278162 Msa0860510:CDS 30.0%
GAATAACAGTAAGAGCAAAA+AGG - chr5_4:59278198-59278217 None:intergenic 30.0%
!! GAGGGTACTTTGTAAATTGA+AGG - chr5_4:59276109-59276128 None:intergenic 35.0%
TGGTCCTTATTACCATTATG+GGG + chr5_4:59276180-59276199 Msa0860510:CDS 35.0%
TTAAATTCTCCTCCCCATAA+TGG - chr5_4:59276195-59276214 None:intergenic 35.0%
! GGAGGAGAATTTAAAGCTTA+TGG + chr5_4:59276201-59276220 Msa0860510:CDS 35.0%
CGTTGGAATAACAACTCAAT+AGG - chr5_4:59276277-59276296 None:intergenic 35.0%
ACAAGTCACTTGATCCAATT+TGG + chr5_4:59276332-59276351 Msa0860510:CDS 35.0%
! ATCATGTGTTTGGTGAACAT+GGG + chr5_4:59276467-59276486 Msa0860510:CDS 35.0%
AGCATGTCACGCTTTATATA+TGG - chr5_4:59276508-59276527 None:intergenic 35.0%
TGAGAATCAGATACCTATGA+CGG + chr5_4:59276534-59276553 Msa0860510:CDS 35.0%
AATGTATGAAGAACCGTCAT+AGG - chr5_4:59276550-59276569 None:intergenic 35.0%
! GTTTGAAATCAACATTGTGG+AGG + chr5_4:59276576-59276595 Msa0860510:CDS 35.0%
TCAACTAGGTCATCTATTGA+GGG - chr5_4:59276802-59276821 None:intergenic 35.0%
! ATATGCATTGGTACATGTGT+CGG - chr5_4:59276827-59276846 None:intergenic 35.0%
! GATTTTCTTCTTGAACAAGG+AGG - chr5_4:59277555-59277574 None:intergenic 35.0%
CAAGAAGAAAATCGAAGAGT+TGG + chr5_4:59277562-59277581 Msa0860510:CDS 35.0%
AGAAGAAAATCGAAGAGTTG+GGG + chr5_4:59277564-59277583 Msa0860510:CDS 35.0%
! GGGGAAATGTATGCATATTT+TGG + chr5_4:59277583-59277602 Msa0860510:CDS 35.0%
!! CTTTTTGATTCTTTTAGCGG+GGG - chr5_4:59277656-59277675 None:intergenic 35.0%
TGCTCAATTGTTCAACTCAT+TGG + chr5_4:59278015-59278034 Msa0860510:CDS 35.0%
ATTGGCCAAAGAAATTTCCA+TGG + chr5_4:59278033-59278052 Msa0860510:CDS 35.0%
!! TTTTAGAAATCCTTGGGCTA+TGG + chr5_4:59278150-59278169 Msa0860510:CDS 35.0%
ATTCAGACTATATACACAGC+TGG + chr5_4:59278214-59278233 Msa0860510:CDS 35.0%
AGCTGGTCAATACTATCAAA+AGG + chr5_4:59278231-59278250 Msa0860510:CDS 35.0%
!! GAGGGTACTTTGTAAATTGA+AGG - chr5_4:59276109-59276128 None:intergenic 35.0%
TGGTCCTTATTACCATTATG+GGG + chr5_4:59276180-59276199 Msa0860510:CDS 35.0%
TTAAATTCTCCTCCCCATAA+TGG - chr5_4:59276195-59276214 None:intergenic 35.0%
! GGAGGAGAATTTAAAGCTTA+TGG + chr5_4:59276201-59276220 Msa0860510:CDS 35.0%
CGTTGGAATAACAACTCAAT+AGG - chr5_4:59276277-59276296 None:intergenic 35.0%
ACAAGTCACTTGATCCAATT+TGG + chr5_4:59276332-59276351 Msa0860510:CDS 35.0%
! ATCATGTGTTTGGTGAACAT+GGG + chr5_4:59276467-59276486 Msa0860510:CDS 35.0%
AGCATGTCACGCTTTATATA+TGG - chr5_4:59276508-59276527 None:intergenic 35.0%
TGAGAATCAGATACCTATGA+CGG + chr5_4:59276534-59276553 Msa0860510:CDS 35.0%
AATGTATGAAGAACCGTCAT+AGG - chr5_4:59276550-59276569 None:intergenic 35.0%
! GTTTGAAATCAACATTGTGG+AGG + chr5_4:59276576-59276595 Msa0860510:CDS 35.0%
TCAACTAGGTCATCTATTGA+GGG - chr5_4:59276802-59276821 None:intergenic 35.0%
! ATATGCATTGGTACATGTGT+CGG - chr5_4:59276827-59276846 None:intergenic 35.0%
! GATTTTCTTCTTGAACAAGG+AGG - chr5_4:59277555-59277574 None:intergenic 35.0%
CAAGAAGAAAATCGAAGAGT+TGG + chr5_4:59277562-59277581 Msa0860510:CDS 35.0%
AGAAGAAAATCGAAGAGTTG+GGG + chr5_4:59277564-59277583 Msa0860510:CDS 35.0%
! GGGGAAATGTATGCATATTT+TGG + chr5_4:59277583-59277602 Msa0860510:CDS 35.0%
!! CTTTTTGATTCTTTTAGCGG+GGG - chr5_4:59277656-59277675 None:intergenic 35.0%
TGCTCAATTGTTCAACTCAT+TGG + chr5_4:59278015-59278034 Msa0860510:CDS 35.0%
ATTGGCCAAAGAAATTTCCA+TGG + chr5_4:59278033-59278052 Msa0860510:CDS 35.0%
!! TTTTAGAAATCCTTGGGCTA+TGG + chr5_4:59278150-59278169 Msa0860510:CDS 35.0%
ATTCAGACTATATACACAGC+TGG + chr5_4:59278214-59278233 Msa0860510:CDS 35.0%
AGCTGGTCAATACTATCAAA+AGG + chr5_4:59278231-59278250 Msa0860510:CDS 35.0%
TCCTACAATAGCTCATGAGA+AGG + chr5_4:59276069-59276088 Msa0860510:CDS 40.0%
TCCTTCTCATGAGCTATTGT+AGG - chr5_4:59276073-59276092 None:intergenic 40.0%
TAGCTCATGAGAAGGAACAA+TGG + chr5_4:59276077-59276096 Msa0860510:CDS 40.0%
AGCTCATGAGAAGGAACAAT+GGG + chr5_4:59276078-59276097 Msa0860510:CDS 40.0%
AAACCCCAAGCAATTTCCTT+TGG + chr5_4:59276160-59276179 Msa0860510:CDS 40.0%
AGGACCAAAGGAAATTGCTT+GGG - chr5_4:59276167-59276186 None:intergenic 40.0%
AAGGACCAAAGGAAATTGCT+TGG - chr5_4:59276168-59276187 None:intergenic 40.0%
TCCTTATTACCATTATGGGG+AGG + chr5_4:59276183-59276202 Msa0860510:CDS 40.0%
TCCTCCCCATAATGGTAATA+AGG - chr5_4:59276187-59276206 None:intergenic 40.0%
ATTCCAACGCTTGAATCAAG+TGG + chr5_4:59276288-59276307 Msa0860510:CDS 40.0%
!! GGTGTGTTGTTTGTCCAAAT+TGG - chr5_4:59276349-59276368 None:intergenic 40.0%
! GATCATGTGTTTGGTGAACA+TGG + chr5_4:59276466-59276485 Msa0860510:CDS 40.0%
GTCAACTAGGTCATCTATTG+AGG - chr5_4:59276803-59276822 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr5_4:59277150-59277169 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr5_4:59277149-59277168 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr5_4:59277149-59277168 Msa0860510:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr5_4:59277150-59277169 Msa0860510:intron 40.0%
TACAAAAGTAGTACACCCTC+CGG - chr5_4:59277168-59277187 None:intergenic 40.0%
GTATCCTTCATGATTGGGAA+TGG - chr5_4:59277533-59277552 None:intergenic 40.0%
!! AGGAGGTATCCTTCATGATT+GGG - chr5_4:59277538-59277557 None:intergenic 40.0%
!! AAGGAGGTATCCTTCATGAT+TGG - chr5_4:59277539-59277558 None:intergenic 40.0%
GCTTCAAGAAAAGCGAAACA+AGG + chr5_4:59277753-59277772 Msa0860510:CDS 40.0%
TGTCATCTAATTTCATGGCC+GGG - chr5_4:59277820-59277839 None:intergenic 40.0%
CTGTCATCTAATTTCATGGC+CGG - chr5_4:59277821-59277840 None:intergenic 40.0%
TTCCATTTCTCAGTCGAAGT+GGG + chr5_4:59277957-59277976 Msa0860510:CDS 40.0%
GGATCCTAATCAATGCTCTT+GGG + chr5_4:59277978-59277997 Msa0860510:CDS 40.0%
!! CATTCCCAAGAGCATTGATT+AGG - chr5_4:59277985-59278004 None:intergenic 40.0%
GCGATCCATGGAAATTTCTT+TGG - chr5_4:59278041-59278060 None:intergenic 40.0%
GTAGAAAACCCTGGAAAAGT+TGG + chr5_4:59278104-59278123 Msa0860510:CDS 40.0%
TCCTACAATAGCTCATGAGA+AGG + chr5_4:59276069-59276088 Msa0860510:CDS 40.0%
TCCTTCTCATGAGCTATTGT+AGG - chr5_4:59276073-59276092 None:intergenic 40.0%
TAGCTCATGAGAAGGAACAA+TGG + chr5_4:59276077-59276096 Msa0860510:CDS 40.0%
AGCTCATGAGAAGGAACAAT+GGG + chr5_4:59276078-59276097 Msa0860510:CDS 40.0%
AAACCCCAAGCAATTTCCTT+TGG + chr5_4:59276160-59276179 Msa0860510:CDS 40.0%
AGGACCAAAGGAAATTGCTT+GGG - chr5_4:59276167-59276186 None:intergenic 40.0%
AAGGACCAAAGGAAATTGCT+TGG - chr5_4:59276168-59276187 None:intergenic 40.0%
TCCTTATTACCATTATGGGG+AGG + chr5_4:59276183-59276202 Msa0860510:CDS 40.0%
TCCTCCCCATAATGGTAATA+AGG - chr5_4:59276187-59276206 None:intergenic 40.0%
ATTCCAACGCTTGAATCAAG+TGG + chr5_4:59276288-59276307 Msa0860510:CDS 40.0%
!! GGTGTGTTGTTTGTCCAAAT+TGG - chr5_4:59276349-59276368 None:intergenic 40.0%
! GATCATGTGTTTGGTGAACA+TGG + chr5_4:59276466-59276485 Msa0860510:CDS 40.0%
GTCAACTAGGTCATCTATTG+AGG - chr5_4:59276803-59276822 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr5_4:59277150-59277169 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr5_4:59277149-59277168 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr5_4:59277149-59277168 Msa0860510:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr5_4:59277150-59277169 Msa0860510:intron 40.0%
TACAAAAGTAGTACACCCTC+CGG - chr5_4:59277168-59277187 None:intergenic 40.0%
GTATCCTTCATGATTGGGAA+TGG - chr5_4:59277533-59277552 None:intergenic 40.0%
!! AGGAGGTATCCTTCATGATT+GGG - chr5_4:59277538-59277557 None:intergenic 40.0%
!! AAGGAGGTATCCTTCATGAT+TGG - chr5_4:59277539-59277558 None:intergenic 40.0%
GCTTCAAGAAAAGCGAAACA+AGG + chr5_4:59277753-59277772 Msa0860510:CDS 40.0%
TGTCATCTAATTTCATGGCC+GGG - chr5_4:59277820-59277839 None:intergenic 40.0%
CTGTCATCTAATTTCATGGC+CGG - chr5_4:59277821-59277840 None:intergenic 40.0%
TTCCATTTCTCAGTCGAAGT+GGG + chr5_4:59277957-59277976 Msa0860510:CDS 40.0%
GGATCCTAATCAATGCTCTT+GGG + chr5_4:59277978-59277997 Msa0860510:CDS 40.0%
!! CATTCCCAAGAGCATTGATT+AGG - chr5_4:59277985-59278004 None:intergenic 40.0%
GCGATCCATGGAAATTTCTT+TGG - chr5_4:59278041-59278060 None:intergenic 40.0%
GTAGAAAACCCTGGAAAAGT+TGG + chr5_4:59278104-59278123 Msa0860510:CDS 40.0%
! CAAAGTACCCTCACAAGTCA+CGG + chr5_4:59276117-59276136 Msa0860510:CDS 45.0%
!!! CTTGGGGTTTGAAGGCATTT+TGG - chr5_4:59276150-59276169 None:intergenic 45.0%
GGAAATTGCTTGGGGTTTGA+AGG - chr5_4:59276158-59276177 None:intergenic 45.0%
GGACCAAAGGAAATTGCTTG+GGG - chr5_4:59276166-59276185 None:intergenic 45.0%
GTACGAGTCTCTCAACTCTT+TGG - chr5_4:59276314-59276333 None:intergenic 45.0%
CTAGGTCATCTATTGAGGGA+CGG - chr5_4:59276798-59276817 None:intergenic 45.0%
TACATGTGTCGGAGTCAACT+AGG - chr5_4:59276816-59276835 None:intergenic 45.0%
TCATGATTGGGAATGGCCAT+GGG - chr5_4:59277526-59277545 None:intergenic 45.0%
TTCATGATTGGGAATGGCCA+TGG - chr5_4:59277527-59277546 None:intergenic 45.0%
ATGGCCATTCCCAATCATGA+AGG + chr5_4:59277526-59277545 Msa0860510:CDS 45.0%
!!! ATTCTTTTAGCGGGGGTGTT+GGG - chr5_4:59277649-59277668 None:intergenic 45.0%
TCTAAGAACACCTCGATCGA+AGG - chr5_4:59277795-59277814 None:intergenic 45.0%
!! ATCCTTAGCAGTGTCGATGA+TGG - chr5_4:59277936-59277955 None:intergenic 45.0%
GTTCCATTTCTCAGTCGAAG+TGG + chr5_4:59277956-59277975 Msa0860510:CDS 45.0%
ATCCCACTTCGACTGAGAAA+TGG - chr5_4:59277962-59277981 None:intergenic 45.0%
GGGATCCTAATCAATGCTCT+TGG + chr5_4:59277977-59277996 Msa0860510:CDS 45.0%
GAAATTTCCATGGATCGCGA+TGG + chr5_4:59278043-59278062 Msa0860510:CDS 45.0%
ATGGAGAACTTGAGATGGTG+AGG + chr5_4:59278062-59278081 Msa0860510:CDS 45.0%
TGGAGAACTTGAGATGGTGA+GGG + chr5_4:59278063-59278082 Msa0860510:CDS 45.0%
AGCACTACTGTAGAAAACCC+TGG + chr5_4:59278095-59278114 Msa0860510:CDS 45.0%
! CAAAGTACCCTCACAAGTCA+CGG + chr5_4:59276117-59276136 Msa0860510:CDS 45.0%
!!! CTTGGGGTTTGAAGGCATTT+TGG - chr5_4:59276150-59276169 None:intergenic 45.0%
GGAAATTGCTTGGGGTTTGA+AGG - chr5_4:59276158-59276177 None:intergenic 45.0%
GGACCAAAGGAAATTGCTTG+GGG - chr5_4:59276166-59276185 None:intergenic 45.0%
GTACGAGTCTCTCAACTCTT+TGG - chr5_4:59276314-59276333 None:intergenic 45.0%
CTAGGTCATCTATTGAGGGA+CGG - chr5_4:59276798-59276817 None:intergenic 45.0%
TACATGTGTCGGAGTCAACT+AGG - chr5_4:59276816-59276835 None:intergenic 45.0%
TCATGATTGGGAATGGCCAT+GGG - chr5_4:59277526-59277545 None:intergenic 45.0%
TTCATGATTGGGAATGGCCA+TGG - chr5_4:59277527-59277546 None:intergenic 45.0%
ATGGCCATTCCCAATCATGA+AGG + chr5_4:59277526-59277545 Msa0860510:CDS 45.0%
!!! ATTCTTTTAGCGGGGGTGTT+GGG - chr5_4:59277649-59277668 None:intergenic 45.0%
TCTAAGAACACCTCGATCGA+AGG - chr5_4:59277795-59277814 None:intergenic 45.0%
!! ATCCTTAGCAGTGTCGATGA+TGG - chr5_4:59277936-59277955 None:intergenic 45.0%
GTTCCATTTCTCAGTCGAAG+TGG + chr5_4:59277956-59277975 Msa0860510:CDS 45.0%
ATCCCACTTCGACTGAGAAA+TGG - chr5_4:59277962-59277981 None:intergenic 45.0%
GGGATCCTAATCAATGCTCT+TGG + chr5_4:59277977-59277996 Msa0860510:CDS 45.0%
GAAATTTCCATGGATCGCGA+TGG + chr5_4:59278043-59278062 Msa0860510:CDS 45.0%
ATGGAGAACTTGAGATGGTG+AGG + chr5_4:59278062-59278081 Msa0860510:CDS 45.0%
TGGAGAACTTGAGATGGTGA+GGG + chr5_4:59278063-59278082 Msa0860510:CDS 45.0%
AGCACTACTGTAGAAAACCC+TGG + chr5_4:59278095-59278114 Msa0860510:CDS 45.0%
! TCCAACTCCGTGACTTGTGA+GGG - chr5_4:59276127-59276146 None:intergenic 50.0%
TGGCCACTTGATTCAAGCGT+TGG - chr5_4:59276294-59276313 None:intergenic 50.0%
GTCATCTATTGAGGGACGGA+GGG - chr5_4:59276794-59276813 None:intergenic 50.0%
CAACTAGGTTGTACACCCTC+CGG + chr5_4:59277015-59277034 Msa0860510:intron 50.0%
!! GATTCTTTTAGCGGGGGTGT+TGG - chr5_4:59277650-59277669 None:intergenic 50.0%
ATCTGCAATGGAGCTCCAAG+AGG + chr5_4:59277721-59277740 Msa0860510:CDS 50.0%
TGAAGCTTACTCCAGCCTCT+TGG - chr5_4:59277739-59277758 None:intergenic 50.0%
GATCGAAGGAAACGTCTTGG+AGG - chr5_4:59277781-59277800 None:intergenic 50.0%
CTCGATCGAAGGAAACGTCT+TGG - chr5_4:59277784-59277803 None:intergenic 50.0%
CAAGACGTTTCCTTCGATCG+AGG + chr5_4:59277782-59277801 Msa0860510:CDS 50.0%
! TCGAGGTGTTCTTAGACTCC+CGG + chr5_4:59277799-59277818 Msa0860510:CDS 50.0%
GCATTTGAACGTCTCCACGT+TGG + chr5_4:59277869-59277888 Msa0860510:CDS 50.0%
CACCATCATCGACACTGCTA+AGG + chr5_4:59277931-59277950 Msa0860510:CDS 50.0%
AAGTTCTCCATCGCGATCCA+TGG - chr5_4:59278053-59278072 None:intergenic 50.0%
TCGCGATGGAGAACTTGAGA+TGG + chr5_4:59278057-59278076 Msa0860510:CDS 50.0%
! CTTGCACGCCAACTTTTCCA+GGG - chr5_4:59278115-59278134 None:intergenic 50.0%
! ACTTGCACGCCAACTTTTCC+AGG - chr5_4:59278116-59278135 None:intergenic 50.0%
ACAAGAGACACCATAGCCCA+AGG - chr5_4:59278163-59278182 None:intergenic 50.0%
! TCCAACTCCGTGACTTGTGA+GGG - chr5_4:59276127-59276146 None:intergenic 50.0%
TGGCCACTTGATTCAAGCGT+TGG - chr5_4:59276294-59276313 None:intergenic 50.0%
GTCATCTATTGAGGGACGGA+GGG - chr5_4:59276794-59276813 None:intergenic 50.0%
CAACTAGGTTGTACACCCTC+CGG + chr5_4:59277015-59277034 Msa0860510:intron 50.0%
!! GATTCTTTTAGCGGGGGTGT+TGG - chr5_4:59277650-59277669 None:intergenic 50.0%
ATCTGCAATGGAGCTCCAAG+AGG + chr5_4:59277721-59277740 Msa0860510:CDS 50.0%
TGAAGCTTACTCCAGCCTCT+TGG - chr5_4:59277739-59277758 None:intergenic 50.0%
GATCGAAGGAAACGTCTTGG+AGG - chr5_4:59277781-59277800 None:intergenic 50.0%
CTCGATCGAAGGAAACGTCT+TGG - chr5_4:59277784-59277803 None:intergenic 50.0%
CAAGACGTTTCCTTCGATCG+AGG + chr5_4:59277782-59277801 Msa0860510:CDS 50.0%
! TCGAGGTGTTCTTAGACTCC+CGG + chr5_4:59277799-59277818 Msa0860510:CDS 50.0%
GCATTTGAACGTCTCCACGT+TGG + chr5_4:59277869-59277888 Msa0860510:CDS 50.0%
CACCATCATCGACACTGCTA+AGG + chr5_4:59277931-59277950 Msa0860510:CDS 50.0%
AAGTTCTCCATCGCGATCCA+TGG - chr5_4:59278053-59278072 None:intergenic 50.0%
TCGCGATGGAGAACTTGAGA+TGG + chr5_4:59278057-59278076 Msa0860510:CDS 50.0%
! CTTGCACGCCAACTTTTCCA+GGG - chr5_4:59278115-59278134 None:intergenic 50.0%
! ACTTGCACGCCAACTTTTCC+AGG - chr5_4:59278116-59278135 None:intergenic 50.0%
ACAAGAGACACCATAGCCCA+AGG - chr5_4:59278163-59278182 None:intergenic 50.0%
ACCCTCACAAGTCACGGAGT+TGG + chr5_4:59276123-59276142 Msa0860510:CDS 55.0%
! GTCCAACTCCGTGACTTGTG+AGG - chr5_4:59276128-59276147 None:intergenic 55.0%
GGTCATCTATTGAGGGACGG+AGG - chr5_4:59276795-59276814 None:intergenic 55.0%
ACCCTCACAAGTCACGGAGT+TGG + chr5_4:59276123-59276142 Msa0860510:CDS 55.0%
! GTCCAACTCCGTGACTTGTG+AGG - chr5_4:59276128-59276147 None:intergenic 55.0%
GGTCATCTATTGAGGGACGG+AGG - chr5_4:59276795-59276814 None:intergenic 55.0%
!!! CTTTTAGCGGGGGTGTTGGG+TGG - chr5_4:59277646-59277665 None:intergenic 60.0%
GCAATGGAGCTCCAAGAGGC+TGG + chr5_4:59277725-59277744 Msa0860510:CDS 60.0%
GAACGTCTCCACGTTGGAGC+TGG + chr5_4:59277875-59277894 Msa0860510:CDS 60.0%
CCTCGTTACCAGCTCCAACG+TGG - chr5_4:59277886-59277905 None:intergenic 60.0%
! CCACGTTGGAGCTGGTAACG+AGG + chr5_4:59277883-59277902 Msa0860510:CDS 60.0%
!!! CTTTTAGCGGGGGTGTTGGG+TGG - chr5_4:59277646-59277665 None:intergenic 60.0%
GCAATGGAGCTCCAAGAGGC+TGG + chr5_4:59277725-59277744 Msa0860510:CDS 60.0%
GAACGTCTCCACGTTGGAGC+TGG + chr5_4:59277875-59277894 Msa0860510:CDS 60.0%
CCTCGTTACCAGCTCCAACG+TGG - chr5_4:59277886-59277905 None:intergenic 60.0%
! CCACGTTGGAGCTGGTAACG+AGG + chr5_4:59277883-59277902 Msa0860510:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 59276013 59278261 59276013 ID=Msa0860510;Name=Msa0860510
chr5_4 mRNA 59276013 59278261 59276013 ID=Msa0860510-mRNA-1;Parent=Msa0860510;Name=Msa0860510-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|456
chr5_4 exon 59276013 59276597 59276013 ID=Msa0860510-mRNA-1:exon:18120;Parent=Msa0860510-mRNA-1
chr5_4 exon 59277476 59278261 59277476 ID=Msa0860510-mRNA-1:exon:18121;Parent=Msa0860510-mRNA-1
chr5_4 CDS 59276013 59276597 59276013 ID=Msa0860510-mRNA-1:cds;Parent=Msa0860510-mRNA-1
chr5_4 CDS 59277476 59278261 59277476 ID=Msa0860510-mRNA-1:cds;Parent=Msa0860510-mRNA-1
Gene Sequence

>Msa0860510

ATGGAGTTAGAAATCAAGTGGCTTGATCAAATCAATGAAGAGATGAAGAACAATGGTCCTACAATAGCTCATGAGAAGGAACAATGGGAGAAGCCTTCAATTTACAAAGTACCCTCACAAGTCACGGAGTTGGACCAAAATGCCTTCAAACCCCAAGCAATTTCCTTTGGTCCTTATTACCATTATGGGGAGGAGAATTTAAAGCTTATGGAAAAGCACAAGCATCGAGCCCTTCTTCATTTTTTAAAGAGATGTGGAAAGCCTATTGAGTTGTTATTCCAACGCTTGAATCAAGTGGCCAAAGAGTTGAGAGACTCGTACAAGTCACTTGATCCAATTTGGACAAACAACACACCAAAATTCATTGAAATGATGATTCTTGATGGTTGTTTCATTTTGGAGATTTTGAGGGTGAATAATGAATGTGAAATCCCGATTGACTATGATAAGAATGATCATGTGTTTGGTGAACATGGGAGACTTTATCTTACGCCATATATAAAGCGTGACATGCTTATACTTGAGAATCAGATACCTATGACGGTTCTTCATACATTGAATGAGTTTGAAATCAACATTGTGGAGGAAGATCATCATGATTCATTAAACGAGAAAATCATAAAATTTCTTAACCCATGGCCATTCCCAATCATGAAGGATACCTCCTTGTTCAAGAAGAAAATCGAAGAGTTGGGGAAATGTATGCATATTTTGGACTTGTACAGAAAAAGTATGATACAAGGAAAAGCAAGCCACCCAACACCCCCGCTAAAAGAATCAAAAAGAAATTTGTTAAATTTTGAGGAACTAGACGAAGATTATCTTATTCGATCTGCAATGGAGCTCCAAGAGGCTGGAGTAAGCTTCAAGAAAAGCGAAACAAGGAGCCTCCAAGACGTTTCCTTCGATCGAGGTGTTCTTAGACTCCCGGCCATGAAATTAGATGACAGTACAAAATACATTTTCCTTAATCTCATTGCATTTGAACGTCTCCACGTTGGAGCTGGTAACGAGGTAACATCTTTTATATGTTTTATGGACACCATCATCGACACTGCTAAGGATGTTCCATTTCTCAGTCGAAGTGGGATCCTAATCAATGCTCTTGGGAATGATAAACTTGTTGCTCAATTGTTCAACTCATTGGCCAAAGAAATTTCCATGGATCGCGATGGAGAACTTGAGATGGTGAGGGTGCGTATGAAGCACTACTGTAGAAAACCCTGGAAAAGTTGGCGTGCAAGTCTCATTCGCACTTATTTTAGAAATCCTTGGGCTATGGTGTCTCTTGTTGTTGCTTTCTTCCTTTTTGCTCTTACTGTTATTCAGACTATATACACAGCTGGTCAATACTATCAAAAGGACTGCTAG
Protein sequence

>Msa0860510

MELEIKWLDQINEEMKNNGPTIAHEKEQWEKPSIYKVPSQVTELDQNAFKPQAISFGPYYHYGEENLKLMEKHKHRALLHFLKRCGKPIELLFQRLNQVAKELRDSYKSLDPIWTNNTPKFIEMMILDGCFILEILRVNNECEIPIDYDKNDHVFGEHGRLYLTPYIKRDMLILENQIPMTVLHTLNEFEINIVEEDHHDSLNEKIIKFLNPWPFPIMKDTSLFKKKIEELGKCMHILDLYRKSMIQGKASHPTPPLKESKRNLLNFEELDEDYLIRSAMELQEAGVSFKKSETRSLQDVSFDRGVLRLPAMKLDDSTKYIFLNLIAFERLHVGAGNEVTSFICFMDTIIDTAKDVPFLSRSGILINALGNDKLVAQLFNSLAKEISMDRDGELEMVRVRMKHYCRKPWKSWRASLIRTYFRNPWAMVSLVVAFFLFALTVIQTIYTAGQYYQKDC*