AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1108560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108560 MtrunA17_Chr7g0242391 85.294 102 14 1 33 133 156 257 8.05e-60 185
Msa1108560 MtrunA17_Chr7g0242391 97.059 34 1 0 1 34 1 34 4.31e-17 74.7
Msa1108560 MtrunA17_Chr7g0242401 68.041 97 31 0 34 130 184 280 7.27e-46 150
Msa1108560 MtrunA17_Chr7g0242401 84.848 33 4 1 1 33 32 63 1.55e-11 60.1
Msa1108560 MtrunA17_Chr7g0242411 69.072 97 29 1 34 130 149 244 9.26e-44 143
Msa1108560 MtrunA17_Chr7g0242411 84.848 33 4 1 1 33 1 32 8.52e-12 60.5
Msa1108560 MtrunA17_Chr7g0242431 63.265 98 36 0 33 130 182 279 1.28e-41 139
Msa1108560 MtrunA17_Chr7g0242431 84.375 32 4 1 2 33 32 62 5.10e-11 58.5
Msa1108560 MtrunA17_Chr4g0006731 57.143 98 42 0 34 131 159 256 8.20e-38 129
Msa1108560 MtrunA17_Chr7g0242451 58.696 92 37 1 33 124 156 246 1.53e-37 127
Msa1108560 MtrunA17_Chr7g0242461 56.863 102 40 2 29 126 149 250 2.08e-36 125
Msa1108560 MtrunA17_Chr3g0113401 48.485 99 51 0 33 131 158 256 1.35e-30 110
Msa1108560 MtrunA17_Chr7g0242441 51.579 95 31 1 34 128 107 186 5.98e-29 103
Msa1108560 MtrunA17_Chr7g0242441 78.788 33 6 1 1 33 2 33 3.23e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108560 AT3G11210.1 47.475 99 52 0 33 131 158 256 1.02e-31 113
Msa1108560 AT2G38180.1 42.478 113 51 3 6 115 133 234 1.81e-25 98.2

Find 40 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACAATGCCAGTTGAATT+TGG 0.242127 7_3:-51511688 Msa1108560:CDS
GAACCAAACAACACAAATTT+AGG 0.285170 7_3:+51515299 None:intergenic
CAATCATTATGGTGAAGGTT+GGG 0.369849 7_3:-51515261 Msa1108560:CDS
GTCATGTGGGAATGGAATAT+TGG 0.373506 7_3:+51511609 None:intergenic
ACTGGAAACCAAGTCTATAT+TGG 0.384084 7_3:-51511711 Msa1108560:CDS
ATTGTTCAATACAATCATTA+TGG 0.393001 7_3:-51515272 Msa1108560:CDS
AGGCCTAAATTTGTGTTGTT+TGG 0.393187 7_3:-51515302 Msa1108560:CDS
CATTCCCACATGACGAGGAT+TGG 0.411555 7_3:-51511600 Msa1108560:CDS
ATTCCCACATGACGAGGATT+GGG 0.425826 7_3:-51511599 Msa1108560:CDS
GAATCTTCTCCAAATTCAAC+TGG 0.437465 7_3:+51511679 None:intergenic
TAATTCAGAGAAGAGAAGAT+TGG 0.466754 7_3:-51511925 Msa1108560:CDS
TCAGGATGAAGTGGATCATA+TGG 0.473741 7_3:+51511655 None:intergenic
TTAATAGTTGACGTTCCATC+AGG 0.477377 7_3:+51511637 None:intergenic
ACAATCATTATGGTGAAGGT+TGG 0.489722 7_3:-51515262 Msa1108560:CDS
CTCAGCTGAGGGGAGTGAAA+TGG 0.490236 7_3:-51511770 Msa1108560:CDS
AAATCAAGGCCATTGATTTG+TGG 0.494052 7_3:-51511952 Msa1108560:CDS
CAATCCTCGTCATGTGGGAA+TGG 0.494781 7_3:+51511601 None:intergenic
TTTACAGATGTGTGATGCTA+TGG 0.499622 7_3:-51511975 Msa1108560:intron
CACTCCCAATCCTCGTCATG+TGG 0.505983 7_3:+51511595 None:intergenic
TCAGAGAAGAGAAGATTGGA+AGG 0.506355 7_3:-51511921 Msa1108560:CDS
GGTGTCAAAGGAAATAATTA+AGG 0.512022 7_3:-51511749 Msa1108560:CDS
CAATACAATCATTATGGTGA+AGG 0.519514 7_3:-51515266 Msa1108560:CDS
GCTACTCTTGCTCACTTGTA+CGG 0.520179 7_3:-51515236 Msa1108560:CDS
TGCTCACTTGTACGGTCGTA+AGG 0.520953 7_3:-51515228 Msa1108560:intron
AATCATTATGGTGAAGGTTG+GGG 0.521403 7_3:-51515260 Msa1108560:CDS
AATTAAAGACCACAAATCAA+TGG 0.527394 7_3:+51511943 None:intergenic
GGAGTTCATTTCTCAGCTGA+GGG 0.534812 7_3:-51511781 Msa1108560:CDS
AGGTCATCAAAGAAGCAGAC+TGG 0.550907 7_3:-51511729 Msa1108560:CDS
TATGATCCACTTCATCCTGA+TGG 0.553655 7_3:-51511652 Msa1108560:CDS
GACGTTCCATCAGGATGAAG+TGG 0.556264 7_3:+51511646 None:intergenic
TGGAGTTCATTTCTCAGCTG+AGG 0.567115 7_3:-51511782 Msa1108560:CDS
ATTGTCTTCCAATATAGACT+TGG 0.570415 7_3:+51511703 None:intergenic
GTGTGATGCTATGGAAATCA+AGG 0.573097 7_3:-51511966 Msa1108560:CDS
GGGGAGTGAAATGGTGTCAA+AGG 0.585018 7_3:-51511761 Msa1108560:CDS
CACATGACGAGGATTGGGAG+TGG 0.610871 7_3:-51511594 Msa1108560:CDS
ATAATGATTGTATTGAACAA+TGG 0.612955 7_3:+51515274 None:intergenic
ACATGACGAGGATTGGGAGT+GGG 0.614997 7_3:-51511593 Msa1108560:CDS
ACTCCCAATCCTCGTCATGT+GGG 0.618376 7_3:+51511596 None:intergenic
TATTCCATTCCCACATGACG+AGG 0.621980 7_3:-51511605 Msa1108560:CDS
GAGTTCATTTCTCAGCTGAG+GGG 0.683116 7_3:-51511780 Msa1108560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTTAAATAATTAAAA+GGG + chr7_3:51514548-51514567 None:intergenic 0.0%
!! AAAATATTTAAATAATTAAA+AGG + chr7_3:51514549-51514568 None:intergenic 0.0%
!! AATTATAACACTAATATAAA+TGG + chr7_3:51512025-51512044 None:intergenic 10.0%
!! ACTAAGTAAAAATAATAATT+TGG + chr7_3:51512381-51512400 None:intergenic 10.0%
!!! ATATTTTCTTCAAAAAAAAA+AGG + chr7_3:51512638-51512657 None:intergenic 10.0%
!!! TTTTAATATTAAAAAAGTGT+GGG + chr7_3:51514148-51514167 None:intergenic 10.0%
!!! TTTTTAATATTAAAAAAGTG+TGG + chr7_3:51514149-51514168 None:intergenic 10.0%
!! TTATATAATACATAAAAGTT+AGG + chr7_3:51514815-51514834 None:intergenic 10.0%
!!! AGATATACAATAATTTTATG+TGG - chr7_3:51513180-51513199 Msa1108560:intron 15.0%
!!! ATTTTTTTTACCTCAAATAT+TGG + chr7_3:51513290-51513309 None:intergenic 15.0%
!!! AATAAGATTTTGTTAAAGTA+AGG - chr7_3:51514454-51514473 Msa1108560:intron 15.0%
!!! NNNNNNAGATGAAATTTGTT+AGG - chr7_3:51514688-51514707 Msa1108560:intron 15.0%
!! CGTAACAAAATTAATAAATA+AGG - chr7_3:51514774-51514793 Msa1108560:intron 15.0%
!! ATTTCAATCATTTAATTAAG+TGG - chr7_3:51515069-51515088 Msa1108560:intron 15.0%
!! ATAATGATTGTATTGAACAA+TGG + chr7_3:51511622-51511641 None:intergenic 20.0%
!! ATTGTTCAATACAATCATTA+TGG - chr7_3:51511621-51511640 Msa1108560:CDS 20.0%
!!! AAAGTACTTATTAAAAGAGA+TGG + chr7_3:51511724-51511743 None:intergenic 20.0%
!! ACACACAATTATAAGATATT+GGG + chr7_3:51511850-51511869 None:intergenic 20.0%
!! TTACTATATCAATGATCTTA+CGG - chr7_3:51512659-51512678 Msa1108560:intron 20.0%
!!! ACAATAATTTTATGTGGTTT+CGG - chr7_3:51513186-51513205 Msa1108560:intron 20.0%
!!! CTTTTTCAACTACAATAATT+TGG + chr7_3:51513222-51513241 None:intergenic 20.0%
!! TCTTAATTGTCATTATCATA+TGG + chr7_3:51513322-51513341 None:intergenic 20.0%
!!! ATGATAATGACAATTAAGAT+AGG - chr7_3:51513323-51513342 Msa1108560:intron 20.0%
!!! GAAGATTATATTGATTTACA+TGG + chr7_3:51513661-51513680 None:intergenic 20.0%
!!! TATCTCAATTTTTTAGTCAA+TGG + chr7_3:51513704-51513723 None:intergenic 20.0%
!! AAAAAGTGAAATTAAGCTTA+CGG - chr7_3:51513764-51513783 Msa1108560:intron 20.0%
!! AGTCTTAAACATATAAGATT+TGG - chr7_3:51514033-51514052 Msa1108560:intron 20.0%
!!! TATAAGATTTGGTACTTATT+AGG - chr7_3:51514044-51514063 Msa1108560:intron 20.0%
!!! TCATTTTTAGGTACATAAAT+GGG + chr7_3:51514317-51514336 None:intergenic 20.0%
!! AATCATTTAATTAAGTGGTT+TGG - chr7_3:51515074-51515093 Msa1108560:intron 20.0%
! CACACACAATTATAAGATAT+TGG + chr7_3:51511851-51511870 None:intergenic 25.0%
! TTCTTTAAGCCACAAATAAA+AGG - chr7_3:51511924-51511943 Msa1108560:CDS 25.0%
!! TAACATCACCCTAATAATTT+TGG + chr7_3:51512195-51512214 None:intergenic 25.0%
! TACTATATCAATGATCTTAC+GGG - chr7_3:51512660-51512679 Msa1108560:intron 25.0%
!! ACGGGTTAAAGATTATTTAT+TGG - chr7_3:51512678-51512697 Msa1108560:intron 25.0%
! AACAAAACTTATCAAAGTCT+AGG - chr7_3:51512785-51512804 Msa1108560:intron 25.0%
!! AAGTCTAGGTATACTATTTT+AGG - chr7_3:51512799-51512818 Msa1108560:intron 25.0%
! AAAAATAGCAAACCAATTGT+AGG - chr7_3:51512971-51512990 Msa1108560:intron 25.0%
! GAATTTATCTGTCAATCATT+AGG - chr7_3:51513066-51513085 Msa1108560:intron 25.0%
! GAACATTGCTAATTATCTAA+AGG + chr7_3:51513378-51513397 None:intergenic 25.0%
! AGGAATACATAGAAAATATG+AGG + chr7_3:51513400-51513419 None:intergenic 25.0%
! TATATTGATCTTGCTGAATA+AGG + chr7_3:51513626-51513645 None:intergenic 25.0%
!!! ACGGTAAAATATTATTTCTG+AGG - chr7_3:51513783-51513802 Msa1108560:intron 25.0%
!!! ATATTATTTCTGAGGAAAGA+AGG - chr7_3:51513791-51513810 Msa1108560:intron 25.0%
! TTAAAACCTCTAATCTTAAG+TGG - chr7_3:51514120-51514139 Msa1108560:intron 25.0%
! TAAAACCTCTAATCTTAAGT+GGG - chr7_3:51514121-51514140 Msa1108560:intron 25.0%
!! AGTTATTGATAGTTGATTAG+TGG - chr7_3:51514189-51514208 Msa1108560:intron 25.0%
! TAAGAAATTTGTATGAGATC+TGG - chr7_3:51514220-51514239 Msa1108560:intron 25.0%
!!! CTCATTTTTAGGTACATAAA+TGG + chr7_3:51514318-51514337 None:intergenic 25.0%
!!! CAATAGAGATACTCATTTTT+AGG + chr7_3:51514329-51514348 None:intergenic 25.0%
! AAAAATGAGTATCTCTATTG+TGG - chr7_3:51514329-51514348 Msa1108560:intron 25.0%
! CACAATTTATTATTTCGTCA+AGG + chr7_3:51514525-51514544 None:intergenic 25.0%
! AATTAAAGACCACAAATCAA+TGG + chr7_3:51514953-51514972 None:intergenic 25.0%
!!! ATTTAATTAAGTGGTTTGGT+TGG - chr7_3:51515078-51515097 Msa1108560:intron 25.0%
GAACCAAACAACACAAATTT+AGG + chr7_3:51511597-51511616 None:intergenic 30.0%
CAATACAATCATTATGGTGA+AGG - chr7_3:51511627-51511646 Msa1108560:CDS 30.0%
!! TGTTCATTGCCTTTTATTTG+TGG + chr7_3:51511936-51511955 None:intergenic 30.0%
AGTAGACACTAAAGAATACA+AGG + chr7_3:51512103-51512122 None:intergenic 30.0%
ACATGTTAAGGAATCCAAAA+TGG - chr7_3:51512232-51512251 Msa1108560:intron 30.0%
CATGTTAAGGAATCCAAAAT+GGG - chr7_3:51512233-51512252 Msa1108560:intron 30.0%
CAAGAGGATAAGAATGAAAT+TGG + chr7_3:51512615-51512634 None:intergenic 30.0%
CTTCAAAAAAAAAAGGCAAG+AGG + chr7_3:51512631-51512650 None:intergenic 30.0%
CAACATGTAATACCTACAAT+TGG + chr7_3:51512986-51513005 None:intergenic 30.0%
! TAATTTTATGTGGTTTCGGA+AGG - chr7_3:51513190-51513209 Msa1108560:intron 30.0%
! TTTTCTATGTATTCCTCCAA+TGG - chr7_3:51513404-51513423 Msa1108560:intron 30.0%
ATCCCTAAAAAATTTGCACA+TGG - chr7_3:51513724-51513743 Msa1108560:intron 30.0%
!!! GTCCATGTGCAAATTTTTTA+GGG + chr7_3:51513729-51513748 None:intergenic 30.0%
!!! TGTCCATGTGCAAATTTTTT+AGG + chr7_3:51513730-51513749 None:intergenic 30.0%
AATCGGATATTCAATACCTT+AGG - chr7_3:51513845-51513864 Msa1108560:intron 30.0%
! TGTGGATGATATTTTTCCTA+AGG + chr7_3:51513864-51513883 None:intergenic 30.0%
!!! TGTAGGTTGATGTAATTTTG+CGG + chr7_3:51513925-51513944 None:intergenic 30.0%
AACCTACATCAAATCAATGT+TGG - chr7_3:51513937-51513956 Msa1108560:intron 30.0%
ACCTACATCAAATCAATGTT+GGG - chr7_3:51513938-51513957 Msa1108560:intron 30.0%
TACTTATTAGGTACCTTCAT+TGG - chr7_3:51514056-51514075 Msa1108560:intron 30.0%
ACTTATTAGGTACCTTCATT+GGG - chr7_3:51514057-51514076 Msa1108560:intron 30.0%
AATTTGTATGAGATCTGGAT+TGG - chr7_3:51514225-51514244 Msa1108560:intron 30.0%
TTCATATATACAAGACAGCA+GGG - chr7_3:51514477-51514496 Msa1108560:intron 30.0%
AACCTAATAAAGCAAATGAG+CGG - chr7_3:51514724-51514743 Msa1108560:intron 30.0%
AATGAATCCAGTGATGAATT+TGG - chr7_3:51514847-51514866 Msa1108560:intron 30.0%
ATGAATCCAGTGATGAATTT+GGG - chr7_3:51514848-51514867 Msa1108560:intron 30.0%
ATGAATTTGGGAAAGCAATA+AGG - chr7_3:51514860-51514879 Msa1108560:intron 30.0%
TAATTCAGAGAAGAGAAGAT+TGG - chr7_3:51514968-51514987 Msa1108560:intron 30.0%
GGTGTCAAAGGAAATAATTA+AGG - chr7_3:51515144-51515163 Msa1108560:intron 30.0%
ATTGTCTTCCAATATAGACT+TGG + chr7_3:51515193-51515212 None:intergenic 30.0%
! AGGCCTAAATTTGTGTTGTT+TGG - chr7_3:51511591-51511610 Msa1108560:CDS 35.0%
ACAATCATTATGGTGAAGGT+TGG - chr7_3:51511631-51511650 Msa1108560:CDS 35.0%
CAATCATTATGGTGAAGGTT+GGG - chr7_3:51511632-51511651 Msa1108560:CDS 35.0%
AATCATTATGGTGAAGGTTG+GGG - chr7_3:51511633-51511652 Msa1108560:CDS 35.0%
AAAAGAGATGGACGTTACTA+CGG + chr7_3:51511712-51511731 None:intergenic 35.0%
GCTAACTCAACTTGAAATCT+CGG - chr7_3:51511791-51511810 Msa1108560:intron 35.0%
TGAAATCTCGGTATTTACGT+TGG - chr7_3:51511803-51511822 Msa1108560:intron 35.0%
TTGTGTGTGTGAGATTTAAG+TGG - chr7_3:51511862-51511881 Msa1108560:intron 35.0%
GAATACAAGGTACAATTCAG+AGG + chr7_3:51512090-51512109 None:intergenic 35.0%
!! TTAGGGGCACCAAAATTATT+AGG - chr7_3:51512183-51512202 Msa1108560:intron 35.0%
!! TAGGGGCACCAAAATTATTA+GGG - chr7_3:51512184-51512203 Msa1108560:intron 35.0%
TGATGTTAACTTATGCCCTA+AGG - chr7_3:51512207-51512226 Msa1108560:intron 35.0%
GATGTTAACTTATGCCCTAA+GGG - chr7_3:51512208-51512227 Msa1108560:intron 35.0%
! CAATGCAAAATTGCCCATTT+TGG + chr7_3:51512249-51512268 None:intergenic 35.0%
! CAAAATGGGCAATTTTGCAT+TGG - chr7_3:51512247-51512266 Msa1108560:intron 35.0%
! GGTTTTCTCGACTATAATAG+AGG + chr7_3:51512704-51512723 None:intergenic 35.0%
AGGAATATAAGTCGAGTCTT+CGG - chr7_3:51513042-51513061 Msa1108560:intron 35.0%
TTCGACTACACCAATATTTG+AGG - chr7_3:51513277-51513296 Msa1108560:intron 35.0%
TAGAGATGACCAATATCACA+AGG - chr7_3:51513532-51513551 Msa1108560:intron 35.0%
AGAGATGACCAATATCACAA+GGG - chr7_3:51513533-51513552 Msa1108560:intron 35.0%
ATGATTGACCCTTGTGATAT+TGG + chr7_3:51513544-51513563 None:intergenic 35.0%
!! TACAAGAAGAGTACCACAAT+CGG - chr7_3:51513828-51513847 Msa1108560:intron 35.0%
!! AGGTATTGAATATCCGATTG+TGG + chr7_3:51513844-51513863 None:intergenic 35.0%
!!! TAGGTTGATGTAATTTTGCG+GGG + chr7_3:51513923-51513942 None:intergenic 35.0%
!!! GTAGGTTGATGTAATTTTGC+GGG + chr7_3:51513924-51513943 None:intergenic 35.0%
!! ACCCAACATTGATTTGATGT+AGG + chr7_3:51513942-51513961 None:intergenic 35.0%
CTTATTAGGTACCTTCATTG+GGG - chr7_3:51514058-51514077 Msa1108560:intron 35.0%
! ACAATTTTTCTCCCCAATGA+AGG + chr7_3:51514072-51514091 None:intergenic 35.0%
TCATTGGGGAGAAAAATTGT+TGG - chr7_3:51514072-51514091 Msa1108560:intron 35.0%
CATTGGGGAGAAAAATTGTT+GGG - chr7_3:51514073-51514092 Msa1108560:intron 35.0%
ATTGGGGAGAAAAATTGTTG+GGG - chr7_3:51514074-51514093 Msa1108560:intron 35.0%
GTTCATATATACAAGACAGC+AGG - chr7_3:51514476-51514495 Msa1108560:intron 35.0%
CAAGGACACCAAAAATCTTA+GGG + chr7_3:51514507-51514526 None:intergenic 35.0%
TCAAGGACACCAAAAATCTT+AGG + chr7_3:51514508-51514527 None:intergenic 35.0%
ACCTAATAAAGCAAATGAGC+GGG - chr7_3:51514725-51514744 Msa1108560:intron 35.0%
CAAATGAGCGGGAAAAAATT+AGG - chr7_3:51514736-51514755 Msa1108560:intron 35.0%
TTTACAGATGTGTGATGCTA+TGG - chr7_3:51514918-51514937 Msa1108560:intron 35.0%
!! AAATCAAGGCCATTGATTTG+TGG - chr7_3:51514941-51514960 Msa1108560:intron 35.0%
ACTGGAAACCAAGTCTATAT+TGG - chr7_3:51515182-51515201 Msa1108560:intron 35.0%
AAGACAATGCCAGTTGAATT+TGG - chr7_3:51515205-51515224 Msa1108560:intron 35.0%
GAATCTTCTCCAAATTCAAC+TGG + chr7_3:51515217-51515236 None:intergenic 35.0%
TTAATAGTTGACGTTCCATC+AGG + chr7_3:51515259-51515278 None:intergenic 35.0%
GACGTTACTACGGTTTAAAG+AGG + chr7_3:51511702-51511721 None:intergenic 40.0%
GCTAAGTATAGATCCCTTTG+TGG - chr7_3:51511759-51511778 Msa1108560:CDS 40.0%
!! TCAAGTTGAGTTAGCCCTTA+CGG + chr7_3:51511786-51511805 None:intergenic 40.0%
!! GTGGTGTTTGTTTTCGTCTA+CGG - chr7_3:51511881-51511900 Msa1108560:intron 40.0%
TGTTAATGAAGTTCGACCAG+TGG - chr7_3:51511965-51511984 Msa1108560:CDS 40.0%
TTTAGTGTCTACTGTCTTGC+AGG - chr7_3:51512110-51512129 Msa1108560:intron 40.0%
TTAGTGTCTACTGTCTTGCA+GGG - chr7_3:51512111-51512130 Msa1108560:intron 40.0%
!!! TTTTGGTGCCCCTAAAAAAG+TGG + chr7_3:51512178-51512197 None:intergenic 40.0%
TTCCTTAACATGTGCCCTTA+GGG + chr7_3:51512225-51512244 None:intergenic 40.0%
ATTCCTTAACATGTGCCCTT+AGG + chr7_3:51512226-51512245 None:intergenic 40.0%
!! ATGTTAACTTGTGCCCTCAA+GGG + chr7_3:51512355-51512374 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr7_3:51512356-51512375 None:intergenic 40.0%
ATCAGTGACGAGCAAATAGA+AGG + chr7_3:51513009-51513028 None:intergenic 40.0%
TTCTATTTGCTCGTCACTGA+TGG - chr7_3:51513008-51513027 Msa1108560:intron 40.0%
TCTATTTGCTCGTCACTGAT+GGG - chr7_3:51513009-51513028 Msa1108560:intron 40.0%
TATTCCTCCAATGGAACATG+AGG - chr7_3:51513413-51513432 Msa1108560:intron 40.0%
TTAGCGATTGTGTACTTTGG+TGG + chr7_3:51513476-51513495 None:intergenic 40.0%
GCATTAGCGATTGTGTACTT+TGG + chr7_3:51513479-51513498 None:intergenic 40.0%
AAGTACACAATCGCTAATGC+TGG - chr7_3:51513479-51513498 Msa1108560:intron 40.0%
!!! AGAGGTTTTAAGTAAGACCC+CGG + chr7_3:51514111-51514130 None:intergenic 40.0%
! TTGTATGAGATCTGGATTGG+AGG - chr7_3:51514228-51514247 Msa1108560:intron 40.0%
! TGTATGAGATCTGGATTGGA+GGG - chr7_3:51514229-51514248 Msa1108560:intron 40.0%
TTCTCTTTCTCAACGAGCAT+TGG + chr7_3:51514389-51514408 None:intergenic 40.0%
GAAACATGTAACTTCATGCC+AGG - chr7_3:51514406-51514425 Msa1108560:intron 40.0%
TTCATTGAGACAAGGCTAGA+AGG - chr7_3:51514429-51514448 Msa1108560:intron 40.0%
TCATTGAGACAAGGCTAGAA+GGG - chr7_3:51514430-51514449 Msa1108560:intron 40.0%
TATATACAAGACAGCAGGGT+CGG - chr7_3:51514481-51514500 Msa1108560:intron 40.0%
! TCCCGCTCATTTGCTTTATT+AGG + chr7_3:51514729-51514748 None:intergenic 40.0%
TGCTTTCCCAAATTCATCAC+TGG + chr7_3:51514857-51514876 None:intergenic 40.0%
GTGTGATGCTATGGAAATCA+AGG - chr7_3:51514927-51514946 Msa1108560:intron 40.0%
TCAGAGAAGAGAAGATTGGA+AGG - chr7_3:51514972-51514991 Msa1108560:intron 40.0%
! GTTTGGTTGGTTCTTAGTGA+TGG - chr7_3:51515091-51515110 Msa1108560:intron 40.0%
TCAGGATGAAGTGGATCATA+TGG + chr7_3:51515241-51515260 None:intergenic 40.0%
TATGATCCACTTCATCCTGA+TGG - chr7_3:51515241-51515260 Msa1108560:CDS 40.0%
GTCATGTGGGAATGGAATAT+TGG + chr7_3:51515287-51515306 None:intergenic 40.0%
GCTACTCTTGCTCACTTGTA+CGG - chr7_3:51511657-51511676 Msa1108560:CDS 45.0%
TACGGACAAGAAATCTCAGC+AGG - chr7_3:51511899-51511918 Msa1108560:intron 45.0%
TAGTGTCTACTGTCTTGCAG+GGG - chr7_3:51512112-51512131 Msa1108560:intron 45.0%
TTCCTTAACATGTGCCCTTG+AGG - chr7_3:51512338-51512357 Msa1108560:intron 45.0%
TCCTTAACATGTGCCCTTGA+GGG - chr7_3:51512339-51512358 Msa1108560:intron 45.0%
TCTTGGTCCTCATGTTCCAT+TGG + chr7_3:51513423-51513442 None:intergenic 45.0%
TCTCATCTTCCACATCCAAG+TGG + chr7_3:51513446-51513465 None:intergenic 45.0%
! GATACGCTGGTTGGAATTCA+AGG + chr7_3:51513901-51513920 None:intergenic 45.0%
CCTATTGTGAATGCTCTTGC+GGG + chr7_3:51514011-51514030 None:intergenic 45.0%
CCCTATTGTGAATGCTCTTG+CGG + chr7_3:51514012-51514031 None:intergenic 45.0%
!! CCGCAAGAGCATTCACAATA+GGG - chr7_3:51514009-51514028 Msa1108560:intron 45.0%
!! CGCAAGAGCATTCACAATAG+GGG - chr7_3:51514010-51514029 Msa1108560:intron 45.0%
! TGTTGGGGTCTTATAAGACC+CGG - chr7_3:51514089-51514108 Msa1108560:intron 45.0%
!!! GAGGTTTTAAGTAAGACCCC+GGG + chr7_3:51514110-51514129 None:intergenic 45.0%
TGGGTCCCACTTAAGATTAG+AGG + chr7_3:51514129-51514148 None:intergenic 45.0%
ATGCCAGGTTCATTGAGACA+AGG - chr7_3:51514421-51514440 Msa1108560:intron 45.0%
!! TAGCCTTGTCTCAATGAACC+TGG + chr7_3:51514427-51514446 None:intergenic 45.0%
TGGAGTTCATTTCTCAGCTG+AGG - chr7_3:51515111-51515130 Msa1108560:intron 45.0%
GGAGTTCATTTCTCAGCTGA+GGG - chr7_3:51515112-51515131 Msa1108560:intron 45.0%
GAGTTCATTTCTCAGCTGAG+GGG - chr7_3:51515113-51515132 Msa1108560:intron 45.0%
AGGTCATCAAAGAAGCAGAC+TGG - chr7_3:51515164-51515183 Msa1108560:intron 45.0%
TATTCCATTCCCACATGACG+AGG - chr7_3:51515288-51515307 Msa1108560:CDS 45.0%
ATTCCCACATGACGAGGATT+GGG - chr7_3:51515294-51515313 Msa1108560:CDS 45.0%
!! TATTAAAAAATTAAAATGTA+AGG - chr7_3:51514160-51514179 Msa1108560:intron 5.0%
!! ATTAAAAAATTAAAATGTAA+GGG - chr7_3:51514161-51514180 Msa1108560:intron 5.0%
TGCTCACTTGTACGGTCGTA+AGG - chr7_3:51511665-51511684 Msa1108560:CDS 50.0%
AGATCCCTTTGTGGTCCGTA+AGG - chr7_3:51511768-51511787 Msa1108560:CDS 50.0%
GATCCCTTTGTGGTCCGTAA+GGG - chr7_3:51511769-51511788 Msa1108560:CDS 50.0%
TAGCCCTTACGGACCACAAA+GGG + chr7_3:51511775-51511794 None:intergenic 50.0%
TTAGCCCTTACGGACCACAA+AGG + chr7_3:51511776-51511795 None:intergenic 50.0%
CTACTTCTGCGACTATGGAG+CGG - chr7_3:51511991-51512010 Msa1108560:intron 50.0%
CCCTAAAAAAGTGGTGCCCT+GGG + chr7_3:51512169-51512188 None:intergenic 50.0%
!!! CCCAGGGCACCACTTTTTTA+GGG - chr7_3:51512166-51512185 Msa1108560:intron 50.0%
!!! CCAGGGCACCACTTTTTTAG+GGG - chr7_3:51512167-51512186 Msa1108560:intron 50.0%
! TGCCCTAAGGGCACATGTTA+AGG - chr7_3:51512220-51512239 Msa1108560:intron 50.0%
GCACGGGTCAAAAGTCTAGT+AGG - chr7_3:51512732-51512751 Msa1108560:intron 50.0%
ATTTGCTCGTCACTGATGGG+AGG - chr7_3:51513012-51513031 Msa1108560:intron 50.0%
TGGTCCTCATGTTCCATTGG+AGG + chr7_3:51513420-51513439 None:intergenic 50.0%
ACATGAGGACCAAGACCACT+TGG - chr7_3:51513428-51513447 Msa1108560:intron 50.0%
CTTCCACATCCAAGTGGTCT+TGG + chr7_3:51513440-51513459 None:intergenic 50.0%
TGGTTGCTCTCGTTGCTCAA+TGG - chr7_3:51513499-51513518 Msa1108560:intron 50.0%
AAGGCGTGGTCTACAAGTTG+TGG + chr7_3:51513882-51513901 None:intergenic 50.0%
! GTAATTTTGCGGGGATACGC+TGG + chr7_3:51513914-51513933 None:intergenic 50.0%
!! CCCGCAAGAGCATTCACAAT+AGG - chr7_3:51514008-51514027 Msa1108560:intron 50.0%
! GTTGGGGTCTTATAAGACCC+GGG - chr7_3:51514090-51514109 Msa1108560:intron 50.0%
! TTGGGGTCTTATAAGACCCG+GGG - chr7_3:51514091-51514110 Msa1108560:intron 50.0%
! AGGGTCGGCCCTAAGATTTT+TGG - chr7_3:51514496-51514515 Msa1108560:intron 50.0%
! GGGGAGTGAAATGGTGTCAA+AGG - chr7_3:51515132-51515151 Msa1108560:intron 50.0%
GACGTTCCATCAGGATGAAG+TGG + chr7_3:51515250-51515269 None:intergenic 50.0%
CAATCCTCGTCATGTGGGAA+TGG + chr7_3:51515295-51515314 None:intergenic 50.0%
CATTCCCACATGACGAGGAT+TGG - chr7_3:51515293-51515312 Msa1108560:CDS 50.0%
ACTCCCAATCCTCGTCATGT+GGG + chr7_3:51515300-51515319 None:intergenic 50.0%
ACATGACGAGGATTGGGAGT+GGG - chr7_3:51515300-51515319 Msa1108560:CDS 50.0%
GGTGCCTACTTCTGCGACTA+TGG - chr7_3:51511986-51512005 Msa1108560:intron 55.0%
CGCTCCATAGTCGCAGAAGT+AGG + chr7_3:51511993-51512012 None:intergenic 55.0%
TGTCTACTGTCTTGCAGGGG+TGG - chr7_3:51512115-51512134 Msa1108560:intron 55.0%
!!! GCCCAGGGCACCACTTTTTT+AGG - chr7_3:51512165-51512184 Msa1108560:intron 55.0%
CCCCTAAAAAAGTGGTGCCC+TGG + chr7_3:51512170-51512189 None:intergenic 55.0%
! GCCCTCAAGGGCACATGTTA+AGG + chr7_3:51512343-51512362 None:intergenic 55.0%
CACTGATGGGAGGACAACTG+AGG - chr7_3:51513022-51513041 Msa1108560:intron 55.0%
GGACCAAGACCACTTGGATG+TGG - chr7_3:51513434-51513453 Msa1108560:intron 55.0%
GCTGGTTGGAATTCAAGGCG+TGG + chr7_3:51513896-51513915 None:intergenic 55.0%
! TTTTGCGGGGATACGCTGGT+TGG + chr7_3:51513910-51513929 None:intergenic 55.0%
CTCAGCTGAGGGGAGTGAAA+TGG - chr7_3:51515123-51515142 Msa1108560:intron 55.0%
CACTCCCAATCCTCGTCATG+TGG + chr7_3:51515301-51515320 None:intergenic 55.0%
CACATGACGAGGATTGGGAG+TGG - chr7_3:51515299-51515318 Msa1108560:CDS 55.0%
GTCGCAGAAGTAGGCACCAC+TGG + chr7_3:51511984-51512003 None:intergenic 60.0%
GAGAAAACCCGTGCGACGCA+CGG - chr7_3:51512715-51512734 Msa1108560:intron 60.0%
AGAAAACCCGTGCGACGCAC+GGG - chr7_3:51512716-51512735 Msa1108560:intron 60.0%
! TTTTGACCCGTGCGTCGCAC+GGG + chr7_3:51512725-51512744 None:intergenic 60.0%
! CTTTTGACCCGTGCGTCGCA+CGG + chr7_3:51512726-51512745 None:intergenic 60.0%
TCTTGCAGGGGTGGCCCTGA+GGG - chr7_3:51512124-51512143 Msa1108560:intron 65.0%
GTCTTGCAGGGGTGGCCCTG+AGG - chr7_3:51512123-51512142 Msa1108560:intron 70.0%
TGGCCCTGAGGGCGAGCTCC+AGG - chr7_3:51512135-51512154 Msa1108560:intron 75.0%
GGCCCTGAGGGCGAGCTCCA+GGG - chr7_3:51512136-51512155 Msa1108560:intron 75.0%
GCCCTGAGGGCGAGCTCCAG+GGG - chr7_3:51512137-51512156 Msa1108560:intron 75.0%
GCCCCTGGAGCTCGCCCTCA+GGG + chr7_3:51512141-51512160 None:intergenic 75.0%
CTGAGGGCGAGCTCCAGGGG+CGG - chr7_3:51512140-51512159 Msa1108560:intron 75.0%
! CGCCCCTGGAGCTCGCCCTC+AGG + chr7_3:51512142-51512161 None:intergenic 80.0%
! AGCTCCAGGGGCGGCAGCCC+AGG - chr7_3:51512149-51512168 Msa1108560:intron 80.0%
! GCTCCAGGGGCGGCAGCCCA+GGG - chr7_3:51512150-51512169 Msa1108560:intron 80.0%
! GTGCCCTGGGCTGCCGCCCC+TGG + chr7_3:51512156-51512175 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 51511588 51515327 51511588 ID=Msa1108560;Name=Msa1108560
chr7_3 mRNA 51511588 51515327 51511588 ID=Msa1108560-mRNA-1;Parent=Msa1108560;Name=Msa1108560-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|133
chr7_3 exon 51515229 51515327 51515229 ID=Msa1108560-mRNA-1:exon:10666;Parent=Msa1108560-mRNA-1
chr7_3 exon 51511908 51511990 51511908 ID=Msa1108560-mRNA-1:exon:10665;Parent=Msa1108560-mRNA-1
chr7_3 exon 51511588 51511807 51511588 ID=Msa1108560-mRNA-1:exon:10664;Parent=Msa1108560-mRNA-1
chr7_3 CDS 51515229 51515327 51515229 ID=Msa1108560-mRNA-1:cds;Parent=Msa1108560-mRNA-1
chr7_3 CDS 51511908 51511990 51511908 ID=Msa1108560-mRNA-1:cds;Parent=Msa1108560-mRNA-1
chr7_3 CDS 51511588 51511807 51511588 ID=Msa1108560-mRNA-1:cds;Parent=Msa1108560-mRNA-1
Gene Sequence

>Msa1108560

ATGAGGCCTAAATTTGTGTTGTTTGGTTCTTCCATTGTTCAATACAATCATTATGGTGAAGGTTGGGGAGCTACTCTTGCTCACTTGTACGGTCGTAAGATGTGTGATGCTATGGAAATCAAGGCCATTGATTTGTGGTCTTTAATTCAGAGAAGAGAAGATTGGAAGGAAGTTTGCTTCATTGATGGAGTTCATTTCTCAGCTGAGGGGAGTGAAATGGTGTCAAAGGAAATAATTAAGGTCATCAAAGAAGCAGACTGGAAACCAAGTCTATATTGGAAGACAATGCCAGTTGAATTTGGAGAAGATTCACCATATGATCCACTTCATCCTGATGGAACGTCAACTATTAATATCTCCAATATTCCATTCCCACATGACGAGGATTGGGAGTGGGAGTAG

Protein sequence

>Msa1108560

MRPKFVLFGSSIVQYNHYGEGWGATLAHLYGRKMCDAMEIKAIDLWSLIQRREDWKEVCFIDGVHFSAEGSEMVSKEIIKVIKEADWKPSLYWKTMPVEFGEDSPYDPLHPDGTSTINISNIPFPHDEDWEWE*