Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875920 | KEH15976.1 | 43.653 | 323 | 81 | 8 | 2 | 239 | 150 | 456 | 1.77e-59 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875920 | A0A072TFJ2 | 43.653 | 323 | 81 | 8 | 2 | 239 | 150 | 456 | 8.44e-60 | 209 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070230 | Msa0875920 | 0.855705 | 5.274291e-62 | -8.615850e-47 |
| Msa0747180 | Msa0875920 | 0.871872 | 4.908256e-67 | -8.615850e-47 |
| Msa0160900 | Msa0875920 | 0.846031 | 2.804317e-59 | -8.615850e-47 |
| Msa0270480 | Msa0875920 | 0.859874 | 3.058072e-63 | -8.615850e-47 |
| Msa0309040 | Msa0875920 | 0.902717 | 7.283224e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875920 | MtrunA17_Chr3g0082121 | 61.940 | 134 | 30 | 1 | 29 | 141 | 393 | 526 | 1.50e-41 | 153 |
| Msa0875920 | MtrunA17_Chr3g0082121 | 55.844 | 77 | 24 | 1 | 141 | 207 | 617 | 693 | 3.49e-18 | 85.5 |
| Msa0875920 | MtrunA17_Chr2g0324011 | 33.333 | 114 | 55 | 1 | 33 | 125 | 371 | 484 | 4.45e-14 | 72.8 |
| Msa0875920 | MtrunA17_Chr1g0203721 | 30.000 | 170 | 94 | 4 | 12 | 160 | 409 | 574 | 2.31e-13 | 70.9 |
| Msa0875920 | MtrunA17_Chr1g0164591 | 72.973 | 37 | 10 | 0 | 29 | 65 | 273 | 309 | 5.26e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 48 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGTCAGCTTCTGTTAA+AGG | 0.115830 | 6_1:-13045473 | None:intergenic |
| TCCAACTTGGCTTGAGAAAT+TGG | 0.175914 | 6_1:+13044972 | Msa0875920:CDS |
| TCCTAATCTCATTTGACATT+TGG | 0.277883 | 6_1:-13045517 | None:intergenic |
| ACAAATTCATGAAAATCTTT+TGG | 0.298226 | 6_1:-13043363 | None:intergenic |
| GTTGTATTGGCTGATGAATC+TGG | 0.356008 | 6_1:+13043333 | Msa0875920:CDS |
| GCTTGGAATGGAAGCCAATC+TGG | 0.361798 | 6_1:+13045395 | Msa0875920:CDS |
| GACATTCCTCATATTCATCT+TGG | 0.362108 | 6_1:-13044372 | None:intergenic |
| TCTTGGAGTGTAAACATTGC+CGG | 0.362313 | 6_1:-13044335 | None:intergenic |
| ATGAGACTCTTCATAAACTT+TGG | 0.394637 | 6_1:-13044773 | None:intergenic |
| TCCAAGCATGTATGCCATCA+TGG | 0.434387 | 6_1:-13045379 | None:intergenic |
| ATATGGAAGCCATGCTTTGA+TGG | 0.436030 | 6_1:+13045418 | Msa0875920:CDS |
| AATGGAAGCCAATCTGGATA+TGG | 0.437868 | 6_1:+13045401 | Msa0875920:CDS |
| TGTTTAAGAAATTTGAAAGA+AGG | 0.449252 | 6_1:+13044403 | Msa0875920:CDS |
| TCCAATTTCTCAAGCCAAGT+TGG | 0.453093 | 6_1:-13044973 | None:intergenic |
| TGTGTCTCATCATTGTTTGC+AGG | 0.459904 | 6_1:-13045148 | None:intergenic |
| AGAGCCGAGATTGCTTAGAT+AGG | 0.461774 | 6_1:+13044935 | Msa0875920:CDS |
| CATGGCTTCCATATCCAGAT+TGG | 0.462462 | 6_1:-13045409 | None:intergenic |
| GGTGTAGAAAATGGTTGTAT+TGG | 0.471535 | 6_1:+13043320 | None:intergenic |
| ATGGAAGTCTACATGAGATT+AGG | 0.477147 | 6_1:+13045492 | Msa0875920:CDS |
| GTTTAAGAAATTTGAAAGAA+GGG | 0.482494 | 6_1:+13044404 | Msa0875920:CDS |
| GGAATTCCAAGATGAATATG+AGG | 0.483458 | 6_1:+13044366 | Msa0875920:CDS |
| TCCAAATGTCAAATGAGATT+AGG | 0.485144 | 6_1:+13045516 | Msa0875920:CDS |
| CCCATGATGGCATACATGCT+TGG | 0.488076 | 6_1:+13045378 | Msa0875920:CDS |
| GTGGACACTGTTGATCTTGG+TGG | 0.493561 | 6_1:+13044898 | Msa0875920:CDS |
| GATGAGACACATGCTTTGAA+TGG | 0.506492 | 6_1:+13045160 | Msa0875920:CDS |
| TTGCCGGCTTGTACAAGCAT+AGG | 0.519591 | 6_1:-13044319 | None:intergenic |
| AGACACATGCTTTGAATGGA+AGG | 0.520202 | 6_1:+13045164 | Msa0875920:CDS |
| ATCCCTATGCTTGTACAAGC+CGG | 0.521377 | 6_1:+13044316 | Msa0875920:CDS |
| TAGTCCTATCTAAGCAATCT+CGG | 0.530700 | 6_1:-13044939 | None:intergenic |
| AATGTGGACACTGTTGATCT+TGG | 0.536764 | 6_1:+13044895 | Msa0875920:CDS |
| TGTATGCCATCATGGGTTGC+TGG | 0.540590 | 6_1:-13045371 | None:intergenic |
| CAATCTCCAGCAACCCATGA+TGG | 0.544924 | 6_1:+13045365 | Msa0875920:CDS |
| ATAATGTTTCTAAAGACTCA+TGG | 0.548211 | 6_1:+13044044 | Msa0875920:CDS |
| CCAAGCATGTATGCCATCAT+GGG | 0.548509 | 6_1:-13045378 | None:intergenic |
| ACTCATTATTCCGCTTTCCG+TGG | 0.552034 | 6_1:-13044240 | None:intergenic |
| CACTTTGAAAGATTTGTCCA+CGG | 0.553473 | 6_1:+13044223 | Msa0875920:CDS |
| AAAGATTTGTCCACGGAAAG+CGG | 0.558162 | 6_1:+13044230 | Msa0875920:CDS |
| TGGACACTGTTGATCTTGGT+GGG | 0.560318 | 6_1:+13044899 | Msa0875920:CDS |
| TTGCTCAATTTAACTGCTCG+AGG | 0.564353 | 6_1:-13044712 | None:intergenic |
| TGCCGGCTTGTACAAGCATA+GGG | 0.574909 | 6_1:-13044318 | None:intergenic |
| GTGCGAAAGACTTTCACTGC+AGG | 0.578283 | 6_1:+13044112 | Msa0875920:CDS |
| TTTGAGATGCCATCAAAGCA+TGG | 0.583887 | 6_1:-13045427 | None:intergenic |
| GATGGCATACATGCTTGGAA+TGG | 0.609086 | 6_1:+13045383 | Msa0875920:CDS |
| CCTTTAACAGAAGCTGACAA+TGG | 0.612454 | 6_1:+13045473 | Msa0875920:CDS |
| GAATTTGTGTCAAAACAAGC+TGG | 0.617409 | 6_1:+13043378 | Msa0875920:CDS |
| GCTGGTGGAATAAACACTGT+TGG | 0.638577 | 6_1:+13043396 | Msa0875920:CDS |
| TTTGTGTCAAAACAAGCTGG+TGG | 0.647892 | 6_1:+13043381 | Msa0875920:CDS |
| GGACACTGTTGATCTTGGTG+GGG | 0.681245 | 6_1:+13044900 | Msa0875920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATTCATGAAAATCTTT+TGG | - | chr6_1:13043366-13043385 | None:intergenic | 20.0% |
| !!! | AGCAAATAACAAACATATTT+TGG | + | chr6_1:13043565-13043584 | Msa0875920:intron | 20.0% |
| !!! | GCAAATAACAAACATATTTT+GGG | + | chr6_1:13043566-13043585 | Msa0875920:intron | 20.0% |
| !! | ATAAATGATTATGAGTACTT+TGG | + | chr6_1:13043603-13043622 | Msa0875920:intron | 20.0% |
| !!! | ATCTTTTTCATTTTCAATCT+TGG | - | chr6_1:13044298-13044317 | None:intergenic | 20.0% |
| !! | TGTTTAAGAAATTTGAAAGA+AGG | + | chr6_1:13044403-13044422 | Msa0875920:CDS | 20.0% |
| !! | GTTTAAGAAATTTGAAAGAA+GGG | + | chr6_1:13044404-13044423 | Msa0875920:CDS | 20.0% |
| !! | TACAAATTATGATAACAACA+AGG | + | chr6_1:13044438-13044457 | Msa0875920:intron | 20.0% |
| !! | ATCAATTGCAAATGAAAAAA+AGG | + | chr6_1:13044867-13044886 | Msa0875920:intron | 20.0% |
| !!! | ACAAATTCATGAAAATCTTT+TGG | - | chr6_1:13043366-13043385 | None:intergenic | 20.0% |
| !!! | AGCAAATAACAAACATATTT+TGG | + | chr6_1:13043565-13043584 | Msa0875920:intron | 20.0% |
| !!! | GCAAATAACAAACATATTTT+GGG | + | chr6_1:13043566-13043585 | Msa0875920:intron | 20.0% |
| !! | ATAAATGATTATGAGTACTT+TGG | + | chr6_1:13043603-13043622 | Msa0875920:intron | 20.0% |
| !!! | ATCTTTTTCATTTTCAATCT+TGG | - | chr6_1:13044298-13044317 | None:intergenic | 20.0% |
| !! | TGTTTAAGAAATTTGAAAGA+AGG | + | chr6_1:13044403-13044422 | Msa0875920:CDS | 20.0% |
| !! | GTTTAAGAAATTTGAAAGAA+GGG | + | chr6_1:13044404-13044423 | Msa0875920:CDS | 20.0% |
| !! | TACAAATTATGATAACAACA+AGG | + | chr6_1:13044438-13044457 | Msa0875920:intron | 20.0% |
| !! | ATCAATTGCAAATGAAAAAA+AGG | + | chr6_1:13044867-13044886 | Msa0875920:intron | 20.0% |
| ! | TGAAACTCATAAAAGAATGA+AGG | - | chr6_1:13043531-13043550 | None:intergenic | 25.0% |
| !! | ATTCTTTTATGAGTTTCAGA+TGG | + | chr6_1:13043533-13043552 | Msa0875920:intron | 25.0% |
| ! | ATCATTTATCATTTGTGCAT+CGG | - | chr6_1:13043592-13043611 | None:intergenic | 25.0% |
| !! | ATTCTTATTTGTCTTGAATG+TGG | - | chr6_1:13043649-13043668 | None:intergenic | 25.0% |
| ! | AAATAAGAATTATCGTCCAT+TGG | + | chr6_1:13043659-13043678 | Msa0875920:intron | 25.0% |
| ! | AATAAGAATTATCGTCCATT+GGG | + | chr6_1:13043660-13043679 | Msa0875920:intron | 25.0% |
| ! | ACAGACAAACAATTGTTTAT+GGG | + | chr6_1:13043706-13043725 | Msa0875920:intron | 25.0% |
| ! | CAAATAACCATTGAAAAGAA+GGG | - | chr6_1:13043758-13043777 | None:intergenic | 25.0% |
| ! | TCAAATAACCATTGAAAAGA+AGG | - | chr6_1:13043759-13043778 | None:intergenic | 25.0% |
| !! | ATAATGTTTCTAAAGACTCA+TGG | + | chr6_1:13044044-13044063 | Msa0875920:CDS | 25.0% |
| ! | CCTTGAATCGAAAAATATTA+TGG | - | chr6_1:13044072-13044091 | None:intergenic | 25.0% |
| !!! | CCATAATATTTTTCGATTCA+AGG | + | chr6_1:13044069-13044088 | Msa0875920:CDS | 25.0% |
| !!! | TTTTTCGATTCAAGGAAAAA+TGG | + | chr6_1:13044077-13044096 | Msa0875920:CDS | 25.0% |
| !! | TTTTCGATTCAAGGAAAAAT+GGG | + | chr6_1:13044078-13044097 | Msa0875920:CDS | 25.0% |
| ! | AGCAATATATACTAAAACGT+TGG | + | chr6_1:13044590-13044609 | Msa0875920:intron | 25.0% |
| ! | GATGTAATCAAAATTGGAAA+GGG | + | chr6_1:13044632-13044651 | Msa0875920:intron | 25.0% |
| ! | ATGTAATCAAAATTGGAAAG+GGG | + | chr6_1:13044633-13044652 | Msa0875920:intron | 25.0% |
| ! | TGGATAAAAAGAGACAAAAA+TGG | + | chr6_1:13044992-13045011 | Msa0875920:CDS | 25.0% |
| ! | GACTAAGAGAAAGAAAAAAT+TGG | + | chr6_1:13045023-13045042 | Msa0875920:CDS | 25.0% |
| !!! | TGTTACTTTTACTACTATGT+AGG | + | chr6_1:13045117-13045136 | Msa0875920:intron | 25.0% |
| ! | AAGGAAGAGAAAGAAAAAAT+TGG | + | chr6_1:13045183-13045202 | Msa0875920:CDS | 25.0% |
| ! | CACATGTTAAAAAGAAAGTA+TGG | - | chr6_1:13045058-13045077 | None:intergenic | 25.0% |
| !! | TGTTACTTCTACTATTATGT+AGG | + | chr6_1:13045340-13045359 | Msa0875920:intron | 25.0% |
| ! | TGAAACTCATAAAAGAATGA+AGG | - | chr6_1:13043531-13043550 | None:intergenic | 25.0% |
| !! | ATTCTTTTATGAGTTTCAGA+TGG | + | chr6_1:13043533-13043552 | Msa0875920:intron | 25.0% |
| ! | ATCATTTATCATTTGTGCAT+CGG | - | chr6_1:13043592-13043611 | None:intergenic | 25.0% |
| !! | ATTCTTATTTGTCTTGAATG+TGG | - | chr6_1:13043649-13043668 | None:intergenic | 25.0% |
| ! | AAATAAGAATTATCGTCCAT+TGG | + | chr6_1:13043659-13043678 | Msa0875920:intron | 25.0% |
| ! | AATAAGAATTATCGTCCATT+GGG | + | chr6_1:13043660-13043679 | Msa0875920:intron | 25.0% |
| ! | ACAGACAAACAATTGTTTAT+GGG | + | chr6_1:13043706-13043725 | Msa0875920:intron | 25.0% |
| ! | CAAATAACCATTGAAAAGAA+GGG | - | chr6_1:13043758-13043777 | None:intergenic | 25.0% |
| ! | TCAAATAACCATTGAAAAGA+AGG | - | chr6_1:13043759-13043778 | None:intergenic | 25.0% |
| !! | ATAATGTTTCTAAAGACTCA+TGG | + | chr6_1:13044044-13044063 | Msa0875920:CDS | 25.0% |
| ! | CCTTGAATCGAAAAATATTA+TGG | - | chr6_1:13044072-13044091 | None:intergenic | 25.0% |
| !!! | CCATAATATTTTTCGATTCA+AGG | + | chr6_1:13044069-13044088 | Msa0875920:CDS | 25.0% |
| !!! | TTTTTCGATTCAAGGAAAAA+TGG | + | chr6_1:13044077-13044096 | Msa0875920:CDS | 25.0% |
| !! | TTTTCGATTCAAGGAAAAAT+GGG | + | chr6_1:13044078-13044097 | Msa0875920:CDS | 25.0% |
| ! | AGCAATATATACTAAAACGT+TGG | + | chr6_1:13044590-13044609 | Msa0875920:intron | 25.0% |
| ! | GATGTAATCAAAATTGGAAA+GGG | + | chr6_1:13044632-13044651 | Msa0875920:intron | 25.0% |
| ! | ATGTAATCAAAATTGGAAAG+GGG | + | chr6_1:13044633-13044652 | Msa0875920:intron | 25.0% |
| ! | TGGATAAAAAGAGACAAAAA+TGG | + | chr6_1:13044992-13045011 | Msa0875920:CDS | 25.0% |
| ! | GACTAAGAGAAAGAAAAAAT+TGG | + | chr6_1:13045023-13045042 | Msa0875920:CDS | 25.0% |
| !!! | TGTTACTTTTACTACTATGT+AGG | + | chr6_1:13045117-13045136 | Msa0875920:intron | 25.0% |
| ! | AAGGAAGAGAAAGAAAAAAT+TGG | + | chr6_1:13045183-13045202 | Msa0875920:CDS | 25.0% |
| ! | CACATGTTAAAAAGAAAGTA+TGG | - | chr6_1:13045058-13045077 | None:intergenic | 25.0% |
| !! | TGTTACTTCTACTATTATGT+AGG | + | chr6_1:13045340-13045359 | Msa0875920:intron | 25.0% |
| CATAAACAATTGTTTGTCTG+TGG | - | chr6_1:13043707-13043726 | None:intergenic | 30.0% | |
| CACAGACAAACAATTGTTTA+TGG | + | chr6_1:13043705-13043724 | Msa0875920:intron | 30.0% | |
| CAGACAAACAATTGTTTATG+GGG | + | chr6_1:13043707-13043726 | Msa0875920:intron | 30.0% | |
| ! | AAACAATCCCTTCTTTTCAA+TGG | + | chr6_1:13043748-13043767 | Msa0875920:intron | 30.0% |
| ! | TGATCTGTTAGAATGGTTTT+AGG | - | chr6_1:13043813-13043832 | None:intergenic | 30.0% |
| ! | TTACACTCCAAGAATTTTTG+AGG | + | chr6_1:13044345-13044364 | Msa0875920:CDS | 30.0% |
| TGGAATTCCTCAAAAATTCT+TGG | - | chr6_1:13044355-13044374 | None:intergenic | 30.0% | |
| ATTATGATAACAACAAGGAG+CGG | + | chr6_1:13044443-13044462 | Msa0875920:intron | 30.0% | |
| !! | CGTTTTAGTATATATTGCTG+AGG | - | chr6_1:13044589-13044608 | None:intergenic | 30.0% |
| GGATGTAATCAAAATTGGAA+AGG | + | chr6_1:13044631-13044650 | Msa0875920:intron | 30.0% | |
| ATGAGACTCTTCATAAACTT+TGG | - | chr6_1:13044776-13044795 | None:intergenic | 30.0% | |
| ! | TATGCTGACTAAAAAGTCTA+TGG | + | chr6_1:13044810-13044829 | Msa0875920:CDS | 30.0% |
| TGAAAAAAAGGATCAGAATG+TGG | + | chr6_1:13044879-13044898 | Msa0875920:intron | 30.0% | |
| GCTTAGATAGGACTAAAAAA+AGG | + | chr6_1:13044947-13044966 | Msa0875920:CDS | 30.0% | |
| GATAGCAGTACTAAAATTCT+AGG | - | chr6_1:13045081-13045100 | None:intergenic | 30.0% | |
| TCCAAATGTCAAATGAGATT+AGG | + | chr6_1:13045516-13045535 | Msa0875920:CDS | 30.0% | |
| TCCTAATCTCATTTGACATT+TGG | - | chr6_1:13045520-13045539 | None:intergenic | 30.0% | |
| CATAAACAATTGTTTGTCTG+TGG | - | chr6_1:13043707-13043726 | None:intergenic | 30.0% | |
| CACAGACAAACAATTGTTTA+TGG | + | chr6_1:13043705-13043724 | Msa0875920:intron | 30.0% | |
| CAGACAAACAATTGTTTATG+GGG | + | chr6_1:13043707-13043726 | Msa0875920:intron | 30.0% | |
| ! | AAACAATCCCTTCTTTTCAA+TGG | + | chr6_1:13043748-13043767 | Msa0875920:intron | 30.0% |
| ! | TGATCTGTTAGAATGGTTTT+AGG | - | chr6_1:13043813-13043832 | None:intergenic | 30.0% |
| ! | TTACACTCCAAGAATTTTTG+AGG | + | chr6_1:13044345-13044364 | Msa0875920:CDS | 30.0% |
| TGGAATTCCTCAAAAATTCT+TGG | - | chr6_1:13044355-13044374 | None:intergenic | 30.0% | |
| ATTATGATAACAACAAGGAG+CGG | + | chr6_1:13044443-13044462 | Msa0875920:intron | 30.0% | |
| !! | CGTTTTAGTATATATTGCTG+AGG | - | chr6_1:13044589-13044608 | None:intergenic | 30.0% |
| GGATGTAATCAAAATTGGAA+AGG | + | chr6_1:13044631-13044650 | Msa0875920:intron | 30.0% | |
| ATGAGACTCTTCATAAACTT+TGG | - | chr6_1:13044776-13044795 | None:intergenic | 30.0% | |
| ! | TATGCTGACTAAAAAGTCTA+TGG | + | chr6_1:13044810-13044829 | Msa0875920:CDS | 30.0% |
| TGAAAAAAAGGATCAGAATG+TGG | + | chr6_1:13044879-13044898 | Msa0875920:intron | 30.0% | |
| GCTTAGATAGGACTAAAAAA+AGG | + | chr6_1:13044947-13044966 | Msa0875920:CDS | 30.0% | |
| GATAGCAGTACTAAAATTCT+AGG | - | chr6_1:13045081-13045100 | None:intergenic | 30.0% | |
| TCCAAATGTCAAATGAGATT+AGG | + | chr6_1:13045516-13045535 | Msa0875920:CDS | 30.0% | |
| TCCTAATCTCATTTGACATT+TGG | - | chr6_1:13045520-13045539 | None:intergenic | 30.0% | |
| GAATTTGTGTCAAAACAAGC+TGG | + | chr6_1:13043378-13043397 | Msa0875920:CDS | 35.0% | |
| TAGTGCGAAGCAAATTTCTA+TGG | - | chr6_1:13043437-13043456 | None:intergenic | 35.0% | |
| ! | GAAATTTGCTTCGCACTAAA+AGG | + | chr6_1:13043439-13043458 | Msa0875920:intron | 35.0% |
| TTGTTTGTCTGTGGCTATTA+AGG | - | chr6_1:13043698-13043717 | None:intergenic | 35.0% | |
| TGAAACCTTTCTCAAAGCAA+TGG | + | chr6_1:13043776-13043795 | Msa0875920:intron | 35.0% | |
| GAAACCTTTCTCAAAGCAAT+GGG | + | chr6_1:13043777-13043796 | Msa0875920:intron | 35.0% | |
| TGCATCTTGATCTGTTAGAA+TGG | - | chr6_1:13043820-13043839 | None:intergenic | 35.0% | |
| GTCATGCTAGAAACATTTCA+TGG | + | chr6_1:13043864-13043883 | Msa0875920:intron | 35.0% | |
| TAGATGATTCACATGCCTTA+GGG | - | chr6_1:13043919-13043938 | None:intergenic | 35.0% | |
| ATAGATGATTCACATGCCTT+AGG | - | chr6_1:13043920-13043939 | None:intergenic | 35.0% | |
| !! | GAGGAAGAAGAATTTTTGAG+TGG | + | chr6_1:13043998-13044017 | Msa0875920:intron | 35.0% |
| !!! | AGAATTTTTGAGTGGATGAG+AGG | + | chr6_1:13044006-13044025 | Msa0875920:intron | 35.0% |
| ATTCAAGGAAAAATGGGCAT+GGG | + | chr6_1:13044084-13044103 | Msa0875920:CDS | 35.0% | |
| ! | CACTTTGAAAGATTTGTCCA+CGG | + | chr6_1:13044223-13044242 | Msa0875920:CDS | 35.0% |
| GGAATTCCAAGATGAATATG+AGG | + | chr6_1:13044366-13044385 | Msa0875920:CDS | 35.0% | |
| GACATTCCTCATATTCATCT+TGG | - | chr6_1:13044375-13044394 | None:intergenic | 35.0% | |
| GATAGTAGTAGCGAATCATA+TGG | + | chr6_1:13044465-13044484 | Msa0875920:intron | 35.0% | |
| GGTTGGGATGTAATCAAAAT+TGG | + | chr6_1:13044626-13044645 | Msa0875920:intron | 35.0% | |
| GAAAGGGGAACATATTGAAT+TGG | + | chr6_1:13044648-13044667 | Msa0875920:intron | 35.0% | |
| CTGACTAAAAAGTCTATGGA+TGG | + | chr6_1:13044814-13044833 | Msa0875920:CDS | 35.0% | |
| TAGTCCTATCTAAGCAATCT+CGG | - | chr6_1:13044942-13044961 | None:intergenic | 35.0% | |
| !! | CTAAAAAAAGGCATCCAACT+TGG | + | chr6_1:13044959-13044978 | Msa0875920:CDS | 35.0% |
| ATGGAAGTCTACATGAGATT+AGG | + | chr6_1:13045492-13045511 | Msa0875920:CDS | 35.0% | |
| GAATTTGTGTCAAAACAAGC+TGG | + | chr6_1:13043378-13043397 | Msa0875920:CDS | 35.0% | |
| TAGTGCGAAGCAAATTTCTA+TGG | - | chr6_1:13043437-13043456 | None:intergenic | 35.0% | |
| ! | GAAATTTGCTTCGCACTAAA+AGG | + | chr6_1:13043439-13043458 | Msa0875920:intron | 35.0% |
| TTGTTTGTCTGTGGCTATTA+AGG | - | chr6_1:13043698-13043717 | None:intergenic | 35.0% | |
| TGAAACCTTTCTCAAAGCAA+TGG | + | chr6_1:13043776-13043795 | Msa0875920:intron | 35.0% | |
| GAAACCTTTCTCAAAGCAAT+GGG | + | chr6_1:13043777-13043796 | Msa0875920:intron | 35.0% | |
| TGCATCTTGATCTGTTAGAA+TGG | - | chr6_1:13043820-13043839 | None:intergenic | 35.0% | |
| GTCATGCTAGAAACATTTCA+TGG | + | chr6_1:13043864-13043883 | Msa0875920:intron | 35.0% | |
| TAGATGATTCACATGCCTTA+GGG | - | chr6_1:13043919-13043938 | None:intergenic | 35.0% | |
| ATAGATGATTCACATGCCTT+AGG | - | chr6_1:13043920-13043939 | None:intergenic | 35.0% | |
| !! | GAGGAAGAAGAATTTTTGAG+TGG | + | chr6_1:13043998-13044017 | Msa0875920:intron | 35.0% |
| !!! | AGAATTTTTGAGTGGATGAG+AGG | + | chr6_1:13044006-13044025 | Msa0875920:intron | 35.0% |
| ATTCAAGGAAAAATGGGCAT+GGG | + | chr6_1:13044084-13044103 | Msa0875920:CDS | 35.0% | |
| ! | CACTTTGAAAGATTTGTCCA+CGG | + | chr6_1:13044223-13044242 | Msa0875920:CDS | 35.0% |
| GGAATTCCAAGATGAATATG+AGG | + | chr6_1:13044366-13044385 | Msa0875920:CDS | 35.0% | |
| GACATTCCTCATATTCATCT+TGG | - | chr6_1:13044375-13044394 | None:intergenic | 35.0% | |
| GATAGTAGTAGCGAATCATA+TGG | + | chr6_1:13044465-13044484 | Msa0875920:intron | 35.0% | |
| GGTTGGGATGTAATCAAAAT+TGG | + | chr6_1:13044626-13044645 | Msa0875920:intron | 35.0% | |
| GAAAGGGGAACATATTGAAT+TGG | + | chr6_1:13044648-13044667 | Msa0875920:intron | 35.0% | |
| CTGACTAAAAAGTCTATGGA+TGG | + | chr6_1:13044814-13044833 | Msa0875920:CDS | 35.0% | |
| TAGTCCTATCTAAGCAATCT+CGG | - | chr6_1:13044942-13044961 | None:intergenic | 35.0% | |
| !! | CTAAAAAAAGGCATCCAACT+TGG | + | chr6_1:13044959-13044978 | Msa0875920:CDS | 35.0% |
| ATGGAAGTCTACATGAGATT+AGG | + | chr6_1:13045492-13045511 | Msa0875920:CDS | 35.0% | |
| !! | GTTGTATTGGCTGATGAATC+TGG | + | chr6_1:13043333-13043352 | Msa0875920:CDS | 40.0% |
| TTTGTGTCAAAACAAGCTGG+TGG | + | chr6_1:13043381-13043400 | Msa0875920:CDS | 40.0% | |
| CTAAAAGGAACCACTCACTA+AGG | + | chr6_1:13043454-13043473 | Msa0875920:intron | 40.0% | |
| TCACTAAGGTATGGTGAAGT+AGG | + | chr6_1:13043468-13043487 | Msa0875920:intron | 40.0% | |
| AACAGATCAAGATGCAGCAA+TGG | + | chr6_1:13043824-13043843 | Msa0875920:intron | 40.0% | |
| ! | CATTTCATGGATTGTGCACT+TGG | + | chr6_1:13043877-13043896 | Msa0875920:intron | 40.0% |
| ATTGTGCACTTGGCATACAA+GGG | + | chr6_1:13043887-13043906 | Msa0875920:intron | 40.0% | |
| ATACAAGGGAAAATGCCCTA+AGG | + | chr6_1:13043901-13043920 | Msa0875920:intron | 40.0% | |
| ! | ATGCATTGATCTACACGAAG+AGG | + | chr6_1:13043979-13043998 | Msa0875920:intron | 40.0% |
| GATTCAAGGAAAAATGGGCA+TGG | + | chr6_1:13044083-13044102 | Msa0875920:CDS | 40.0% | |
| AAAGATTTGTCCACGGAAAG+CGG | + | chr6_1:13044230-13044249 | Msa0875920:CDS | 40.0% | |
| TCTTGGAGTGTAAACATTGC+CGG | - | chr6_1:13044338-13044357 | None:intergenic | 40.0% | |
| ! | TGTCGAAAGTTTGAGACACA+TGG | + | chr6_1:13044508-13044527 | Msa0875920:intron | 40.0% |
| TTGCTCAATTTAACTGCTCG+AGG | - | chr6_1:13044715-13044734 | None:intergenic | 40.0% | |
| AATGTGGACACTGTTGATCT+TGG | + | chr6_1:13044895-13044914 | Msa0875920:CDS | 40.0% | |
| ! | TCCAACTTGGCTTGAGAAAT+TGG | + | chr6_1:13044972-13044991 | Msa0875920:CDS | 40.0% |
| TCCAATTTCTCAAGCCAAGT+TGG | - | chr6_1:13044976-13044995 | None:intergenic | 40.0% | |
| TGTGTCTCATCATTGTTTGC+AGG | - | chr6_1:13045151-13045170 | None:intergenic | 40.0% | |
| ! | GATGAGACACATGCTTTGAA+TGG | + | chr6_1:13045160-13045179 | Msa0875920:CDS | 40.0% |
| ! | AGACACATGCTTTGAATGGA+AGG | + | chr6_1:13045164-13045183 | Msa0875920:CDS | 40.0% |
| AATGGAAGCCAATCTGGATA+TGG | + | chr6_1:13045401-13045420 | Msa0875920:CDS | 40.0% | |
| ATATGGAAGCCATGCTTTGA+TGG | + | chr6_1:13045418-13045437 | Msa0875920:CDS | 40.0% | |
| ! | TTTGAGATGCCATCAAAGCA+TGG | - | chr6_1:13045430-13045449 | None:intergenic | 40.0% |
| CCATTGTCAGCTTCTGTTAA+AGG | - | chr6_1:13045476-13045495 | None:intergenic | 40.0% | |
| CCTTTAACAGAAGCTGACAA+TGG | + | chr6_1:13045473-13045492 | Msa0875920:CDS | 40.0% | |
| !! | GTTGTATTGGCTGATGAATC+TGG | + | chr6_1:13043333-13043352 | Msa0875920:CDS | 40.0% |
| TTTGTGTCAAAACAAGCTGG+TGG | + | chr6_1:13043381-13043400 | Msa0875920:CDS | 40.0% | |
| CTAAAAGGAACCACTCACTA+AGG | + | chr6_1:13043454-13043473 | Msa0875920:intron | 40.0% | |
| TCACTAAGGTATGGTGAAGT+AGG | + | chr6_1:13043468-13043487 | Msa0875920:intron | 40.0% | |
| AACAGATCAAGATGCAGCAA+TGG | + | chr6_1:13043824-13043843 | Msa0875920:intron | 40.0% | |
| ! | CATTTCATGGATTGTGCACT+TGG | + | chr6_1:13043877-13043896 | Msa0875920:intron | 40.0% |
| ATTGTGCACTTGGCATACAA+GGG | + | chr6_1:13043887-13043906 | Msa0875920:intron | 40.0% | |
| ATACAAGGGAAAATGCCCTA+AGG | + | chr6_1:13043901-13043920 | Msa0875920:intron | 40.0% | |
| ! | ATGCATTGATCTACACGAAG+AGG | + | chr6_1:13043979-13043998 | Msa0875920:intron | 40.0% |
| GATTCAAGGAAAAATGGGCA+TGG | + | chr6_1:13044083-13044102 | Msa0875920:CDS | 40.0% | |
| AAAGATTTGTCCACGGAAAG+CGG | + | chr6_1:13044230-13044249 | Msa0875920:CDS | 40.0% | |
| TCTTGGAGTGTAAACATTGC+CGG | - | chr6_1:13044338-13044357 | None:intergenic | 40.0% | |
| ! | TGTCGAAAGTTTGAGACACA+TGG | + | chr6_1:13044508-13044527 | Msa0875920:intron | 40.0% |
| TTGCTCAATTTAACTGCTCG+AGG | - | chr6_1:13044715-13044734 | None:intergenic | 40.0% | |
| AATGTGGACACTGTTGATCT+TGG | + | chr6_1:13044895-13044914 | Msa0875920:CDS | 40.0% | |
| ! | TCCAACTTGGCTTGAGAAAT+TGG | + | chr6_1:13044972-13044991 | Msa0875920:CDS | 40.0% |
| TCCAATTTCTCAAGCCAAGT+TGG | - | chr6_1:13044976-13044995 | None:intergenic | 40.0% | |
| TGTGTCTCATCATTGTTTGC+AGG | - | chr6_1:13045151-13045170 | None:intergenic | 40.0% | |
| ! | GATGAGACACATGCTTTGAA+TGG | + | chr6_1:13045160-13045179 | Msa0875920:CDS | 40.0% |
| ! | AGACACATGCTTTGAATGGA+AGG | + | chr6_1:13045164-13045183 | Msa0875920:CDS | 40.0% |
| AATGGAAGCCAATCTGGATA+TGG | + | chr6_1:13045401-13045420 | Msa0875920:CDS | 40.0% | |
| ATATGGAAGCCATGCTTTGA+TGG | + | chr6_1:13045418-13045437 | Msa0875920:CDS | 40.0% | |
| ! | TTTGAGATGCCATCAAAGCA+TGG | - | chr6_1:13045430-13045449 | None:intergenic | 40.0% |
| CCATTGTCAGCTTCTGTTAA+AGG | - | chr6_1:13045476-13045495 | None:intergenic | 40.0% | |
| CCTTTAACAGAAGCTGACAA+TGG | + | chr6_1:13045473-13045492 | Msa0875920:CDS | 40.0% | |
| GCTGGTGGAATAAACACTGT+TGG | + | chr6_1:13043396-13043415 | Msa0875920:CDS | 45.0% | |
| AGGAACCACTCACTAAGGTA+TGG | + | chr6_1:13043459-13043478 | Msa0875920:intron | 45.0% | |
| CTTCACCATACCTTAGTGAG+TGG | - | chr6_1:13043467-13043486 | None:intergenic | 45.0% | |
| !! | CGTCCATTGGGAGTATTTGT+TGG | + | chr6_1:13043672-13043691 | Msa0875920:intron | 45.0% |
| AGGCCAACAAATACTCCCAA+TGG | - | chr6_1:13043678-13043697 | None:intergenic | 45.0% | |
| ACCTTTCTCAAAGCAATGGG+TGG | + | chr6_1:13043780-13043799 | Msa0875920:intron | 45.0% | |
| CCTTTCTCAAAGCAATGGGT+GGG | + | chr6_1:13043781-13043800 | Msa0875920:intron | 45.0% | |
| TCAAGATGCAGCAATGGCTA+AGG | + | chr6_1:13043830-13043849 | Msa0875920:intron | 45.0% | |
| GATTGTGCACTTGGCATACA+AGG | + | chr6_1:13043886-13043905 | Msa0875920:intron | 45.0% | |
| ACTCATTATTCCGCTTTCCG+TGG | - | chr6_1:13044243-13044262 | None:intergenic | 45.0% | |
| ATCCCTATGCTTGTACAAGC+CGG | + | chr6_1:13044316-13044335 | Msa0875920:CDS | 45.0% | |
| AACGTTGGACAAGAGATGCA+AGG | + | chr6_1:13044605-13044624 | Msa0875920:intron | 45.0% | |
| TTGGACAAGAGATGCAAGGT+TGG | + | chr6_1:13044609-13044628 | Msa0875920:intron | 45.0% | |
| TGGACAAGAGATGCAAGGTT+GGG | + | chr6_1:13044610-13044629 | Msa0875920:intron | 45.0% | |
| TGGACACTGTTGATCTTGGT+GGG | + | chr6_1:13044899-13044918 | Msa0875920:CDS | 45.0% | |
| AGAGCCGAGATTGCTTAGAT+AGG | + | chr6_1:13044935-13044954 | Msa0875920:CDS | 45.0% | |
| CCAAGCATGTATGCCATCAT+GGG | - | chr6_1:13045381-13045400 | None:intergenic | 45.0% | |
| TCCAAGCATGTATGCCATCA+TGG | - | chr6_1:13045382-13045401 | None:intergenic | 45.0% | |
| GATGGCATACATGCTTGGAA+TGG | + | chr6_1:13045383-13045402 | Msa0875920:CDS | 45.0% | |
| CATGGCTTCCATATCCAGAT+TGG | - | chr6_1:13045412-13045431 | None:intergenic | 45.0% | |
| GCTGGTGGAATAAACACTGT+TGG | + | chr6_1:13043396-13043415 | Msa0875920:CDS | 45.0% | |
| AGGAACCACTCACTAAGGTA+TGG | + | chr6_1:13043459-13043478 | Msa0875920:intron | 45.0% | |
| CTTCACCATACCTTAGTGAG+TGG | - | chr6_1:13043467-13043486 | None:intergenic | 45.0% | |
| !! | CGTCCATTGGGAGTATTTGT+TGG | + | chr6_1:13043672-13043691 | Msa0875920:intron | 45.0% |
| AGGCCAACAAATACTCCCAA+TGG | - | chr6_1:13043678-13043697 | None:intergenic | 45.0% | |
| ACCTTTCTCAAAGCAATGGG+TGG | + | chr6_1:13043780-13043799 | Msa0875920:intron | 45.0% | |
| CCTTTCTCAAAGCAATGGGT+GGG | + | chr6_1:13043781-13043800 | Msa0875920:intron | 45.0% | |
| TCAAGATGCAGCAATGGCTA+AGG | + | chr6_1:13043830-13043849 | Msa0875920:intron | 45.0% | |
| GATTGTGCACTTGGCATACA+AGG | + | chr6_1:13043886-13043905 | Msa0875920:intron | 45.0% | |
| ACTCATTATTCCGCTTTCCG+TGG | - | chr6_1:13044243-13044262 | None:intergenic | 45.0% | |
| ATCCCTATGCTTGTACAAGC+CGG | + | chr6_1:13044316-13044335 | Msa0875920:CDS | 45.0% | |
| AACGTTGGACAAGAGATGCA+AGG | + | chr6_1:13044605-13044624 | Msa0875920:intron | 45.0% | |
| TTGGACAAGAGATGCAAGGT+TGG | + | chr6_1:13044609-13044628 | Msa0875920:intron | 45.0% | |
| TGGACAAGAGATGCAAGGTT+GGG | + | chr6_1:13044610-13044629 | Msa0875920:intron | 45.0% | |
| TGGACACTGTTGATCTTGGT+GGG | + | chr6_1:13044899-13044918 | Msa0875920:CDS | 45.0% | |
| AGAGCCGAGATTGCTTAGAT+AGG | + | chr6_1:13044935-13044954 | Msa0875920:CDS | 45.0% | |
| CCAAGCATGTATGCCATCAT+GGG | - | chr6_1:13045381-13045400 | None:intergenic | 45.0% | |
| TCCAAGCATGTATGCCATCA+TGG | - | chr6_1:13045382-13045401 | None:intergenic | 45.0% | |
| GATGGCATACATGCTTGGAA+TGG | + | chr6_1:13045383-13045402 | Msa0875920:CDS | 45.0% | |
| CATGGCTTCCATATCCAGAT+TGG | - | chr6_1:13045412-13045431 | None:intergenic | 45.0% | |
| !! | CCCACCCATTGCTTTGAGAA+AGG | - | chr6_1:13043784-13043803 | None:intergenic | 50.0% |
| GTGCGAAAGACTTTCACTGC+AGG | + | chr6_1:13044112-13044131 | Msa0875920:CDS | 50.0% | |
| !! | TGCCGGCTTGTACAAGCATA+GGG | - | chr6_1:13044321-13044340 | None:intergenic | 50.0% |
| !! | TTGCCGGCTTGTACAAGCAT+AGG | - | chr6_1:13044322-13044341 | None:intergenic | 50.0% |
| GTGGACACTGTTGATCTTGG+TGG | + | chr6_1:13044898-13044917 | Msa0875920:CDS | 50.0% | |
| GGACACTGTTGATCTTGGTG+GGG | + | chr6_1:13044900-13044919 | Msa0875920:CDS | 50.0% | |
| CAATCTCCAGCAACCCATGA+TGG | + | chr6_1:13045365-13045384 | Msa0875920:CDS | 50.0% | |
| ! | TGTATGCCATCATGGGTTGC+TGG | - | chr6_1:13045374-13045393 | None:intergenic | 50.0% |
| CCCATGATGGCATACATGCT+TGG | + | chr6_1:13045378-13045397 | Msa0875920:CDS | 50.0% | |
| GCTTGGAATGGAAGCCAATC+TGG | + | chr6_1:13045395-13045414 | Msa0875920:CDS | 50.0% | |
| !! | CCCACCCATTGCTTTGAGAA+AGG | - | chr6_1:13043784-13043803 | None:intergenic | 50.0% |
| GTGCGAAAGACTTTCACTGC+AGG | + | chr6_1:13044112-13044131 | Msa0875920:CDS | 50.0% | |
| !! | TGCCGGCTTGTACAAGCATA+GGG | - | chr6_1:13044321-13044340 | None:intergenic | 50.0% |
| !! | TTGCCGGCTTGTACAAGCAT+AGG | - | chr6_1:13044322-13044341 | None:intergenic | 50.0% |
| GTGGACACTGTTGATCTTGG+TGG | + | chr6_1:13044898-13044917 | Msa0875920:CDS | 50.0% | |
| GGACACTGTTGATCTTGGTG+GGG | + | chr6_1:13044900-13044919 | Msa0875920:CDS | 50.0% | |
| CAATCTCCAGCAACCCATGA+TGG | + | chr6_1:13045365-13045384 | Msa0875920:CDS | 50.0% | |
| ! | TGTATGCCATCATGGGTTGC+TGG | - | chr6_1:13045374-13045393 | None:intergenic | 50.0% |
| CCCATGATGGCATACATGCT+TGG | + | chr6_1:13045378-13045397 | Msa0875920:CDS | 50.0% | |
| GCTTGGAATGGAAGCCAATC+TGG | + | chr6_1:13045395-13045414 | Msa0875920:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 13043330 | 13045544 | 13043330 | ID=Msa0875920;Name=Msa0875920 |
| chr6_1 | mRNA | 13043330 | 13045544 | 13043330 | ID=Msa0875920-mRNA-1;Parent=Msa0875920;Name=Msa0875920-mRNA-1;_AED=0.28;_eAED=0.34;_QI=0|0|0|0.85|0.33|0.28|7|0|325 |
| chr6_1 | exon | 13043330 | 13043417 | 13043330 | ID=Msa0875920-mRNA-1:exon:3862;Parent=Msa0875920-mRNA-1 |
| chr6_1 | exon | 13044038 | 13044133 | 13044038 | ID=Msa0875920-mRNA-1:exon:3863;Parent=Msa0875920-mRNA-1 |
| chr6_1 | exon | 13044197 | 13044432 | 13044197 | ID=Msa0875920-mRNA-1:exon:3864;Parent=Msa0875920-mRNA-1 |
| chr6_1 | exon | 13044706 | 13044858 | 13044706 | ID=Msa0875920-mRNA-1:exon:3865;Parent=Msa0875920-mRNA-1 |
| chr6_1 | exon | 13044889 | 13045044 | 13044889 | ID=Msa0875920-mRNA-1:exon:3866;Parent=Msa0875920-mRNA-1 |
| chr6_1 | exon | 13045139 | 13045204 | 13045139 | ID=Msa0875920-mRNA-1:exon:3867;Parent=Msa0875920-mRNA-1 |
| chr6_1 | exon | 13045362 | 13045544 | 13045362 | ID=Msa0875920-mRNA-1:exon:3868;Parent=Msa0875920-mRNA-1 |
| chr6_1 | CDS | 13043330 | 13043417 | 13043330 | ID=Msa0875920-mRNA-1:cds;Parent=Msa0875920-mRNA-1 |
| chr6_1 | CDS | 13044038 | 13044133 | 13044038 | ID=Msa0875920-mRNA-1:cds;Parent=Msa0875920-mRNA-1 |
| chr6_1 | CDS | 13044197 | 13044432 | 13044197 | ID=Msa0875920-mRNA-1:cds;Parent=Msa0875920-mRNA-1 |
| chr6_1 | CDS | 13044706 | 13044858 | 13044706 | ID=Msa0875920-mRNA-1:cds;Parent=Msa0875920-mRNA-1 |
| chr6_1 | CDS | 13044889 | 13045044 | 13044889 | ID=Msa0875920-mRNA-1:cds;Parent=Msa0875920-mRNA-1 |
| chr6_1 | CDS | 13045139 | 13045204 | 13045139 | ID=Msa0875920-mRNA-1:cds;Parent=Msa0875920-mRNA-1 |
| chr6_1 | CDS | 13045362 | 13045544 | 13045362 | ID=Msa0875920-mRNA-1:cds;Parent=Msa0875920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
