Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270480 | AES94535.1 | 67.399 | 273 | 45 | 4 | 1 | 273 | 1 | 229 | 9.36e-117 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270480 | G7K2I4 | 67.399 | 273 | 45 | 4 | 1 | 273 | 1 | 229 | 4.47e-117 | 346 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0270480 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070230 | Msa0270480 | 0.865340 | 6.338040e-65 | -8.615850e-47 |
| Msa0160900 | Msa0270480 | 0.861537 | 9.568294e-64 | -8.615850e-47 |
| Msa0270480 | Msa0309040 | 0.894740 | 1.856376e-75 | -8.615850e-47 |
| Msa0270480 | Msa0747180 | 0.970050 | 4.956320e-131 | -8.615850e-47 |
| Msa0270480 | Msa0875920 | 0.859874 | 3.058072e-63 | -8.615850e-47 |
| Msa0270480 | Msa1033330 | 0.803102 | 4.090999e-49 | -8.615850e-47 |
| Msa0270480 | Msa1138300 | 0.802042 | 6.767102e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270480 | MtrunA17_Chr5g0401121 | 92.466 | 146 | 11 | 0 | 1 | 146 | 1 | 146 | 5.50e-97 | 282 |
| Msa0270480 | MtrunA17_Chr3g0082121 | 72.441 | 127 | 31 | 1 | 24 | 146 | 7 | 133 | 1.69e-55 | 190 |
| Msa0270480 | MtrunA17_Chr6g0458391 | 50.562 | 89 | 44 | 0 | 49 | 137 | 218 | 306 | 3.81e-23 | 99.0 |
| Msa0270480 | MtrunA17_Chr6g0458391 | 37.838 | 111 | 65 | 2 | 27 | 137 | 65 | 171 | 4.43e-15 | 75.1 |
| Msa0270480 | MtrunA17_Chr1g0203721 | 53.947 | 76 | 35 | 0 | 62 | 137 | 69 | 144 | 4.52e-22 | 95.9 |
| Msa0270480 | MtrunA17_Chr4g0033611 | 45.055 | 91 | 46 | 2 | 56 | 146 | 76 | 162 | 7.69e-17 | 78.2 |
| Msa0270480 | MtrunA17_Chr2g0329421 | 43.210 | 81 | 45 | 1 | 56 | 136 | 27 | 106 | 7.71e-16 | 74.7 |
| Msa0270480 | MtrunA17_Chr7g0258861 | 43.373 | 83 | 45 | 2 | 56 | 137 | 10 | 91 | 5.35e-11 | 62.0 |
| Msa0270480 | MtrunA17_Chr2g0324011 | 43.820 | 89 | 46 | 3 | 56 | 143 | 10 | 95 | 8.10e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270480 | AT3G59470.3 | 46.914 | 81 | 42 | 1 | 56 | 136 | 70 | 149 | 4.42e-16 | 76.3 |
| Msa0270480 | AT3G59470.1 | 46.914 | 81 | 42 | 1 | 56 | 136 | 70 | 149 | 4.42e-16 | 76.3 |
| Msa0270480 | AT3G59470.2 | 46.914 | 81 | 42 | 1 | 56 | 136 | 82 | 161 | 5.39e-16 | 76.3 |
| Msa0270480 | AT3G07500.1 | 39.506 | 81 | 49 | 0 | 56 | 136 | 33 | 113 | 5.75e-11 | 61.2 |
Find 57 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGTTAGCTTCTGTTAA+AGG | 0.143654 | 2_3:+1709605 | None:intergenic |
| TCCAACTTGGCTTGAGAAAT+TGG | 0.175914 | 2_3:-1710094 | Msa0270480:CDS |
| TCCTAATCTCATTTGACATT+TGG | 0.288109 | 2_3:+1709561 | None:intergenic |
| GCTTGGAATGGAAGCCAATC+TGG | 0.361798 | 2_3:-1709683 | Msa0270480:CDS |
| TATAGTAGGAAATGTGGTTT+TGG | 0.369598 | 2_3:-1710396 | Msa0270480:CDS |
| GGTGAATGATATCGTGCAAC+AGG | 0.381657 | 2_3:-1710502 | Msa0270480:CDS |
| TCACCATTCATCACCACCTC+TGG | 0.385515 | 2_3:-1710722 | Msa0270480:CDS |
| ATTTCACTTGATCGGAAGAT+TGG | 0.399360 | 2_3:-1710213 | Msa0270480:CDS |
| GACACCGCGTCTACCCTCTT+TGG | 0.402002 | 2_3:+1710305 | None:intergenic |
| TAATGTACCACACTTGGAAA+TGG | 0.424296 | 2_3:-1710460 | Msa0270480:CDS |
| TCCAAGCATGTATGCCATCA+TGG | 0.434387 | 2_3:+1709699 | None:intergenic |
| ATATGGAAGCCATGCTTTGA+TGG | 0.436030 | 2_3:-1709660 | Msa0270480:CDS |
| TACACCTTCAACCATTGGAT+TGG | 0.436578 | 2_3:+1710533 | None:intergenic |
| AATGGAAGCCAATCTGGATA+TGG | 0.437868 | 2_3:-1709677 | Msa0270480:CDS |
| ACGTGTGTCGTTTCTACCAT+TGG | 0.448381 | 2_3:+1710763 | None:intergenic |
| TCCAATTTCTCAAGCCAAGT+TGG | 0.453093 | 2_3:+1710093 | None:intergenic |
| TGTGTACCATCATTGTTTGC+AGG | 0.460822 | 2_3:+1709918 | None:intergenic |
| GGACTTTGAGTCTGAGGCCT+TGG | 0.461262 | 2_3:-1710439 | Msa0270480:CDS |
| AGAGCCGAGATTGCTTAGAT+AGG | 0.461774 | 2_3:-1710131 | Msa0270480:CDS |
| CATGGCTTCCATATCCAGAT+TGG | 0.462462 | 2_3:+1709669 | None:intergenic |
| ATGGAAGTCTACATGAGATT+AGG | 0.464776 | 2_3:-1709586 | Msa0270480:CDS |
| AACAGGATGTTTAGCACGTA+TGG | 0.468473 | 2_3:-1710238 | Msa0270480:CDS |
| TCCAAATGTCAAATGAGATT+AGG | 0.485144 | 2_3:-1709562 | Msa0270480:CDS |
| CCCATGATGGCATACATGCT+TGG | 0.488076 | 2_3:-1709700 | Msa0270480:CDS |
| GTGGACACTGTTGATCTTGG+TGG | 0.493561 | 2_3:-1710168 | Msa0270480:CDS |
| GATGGTACACATGCTTTGAA+TGG | 0.516924 | 2_3:-1709906 | Msa0270480:CDS |
| CACCATTCATCACCACCTCT+GGG | 0.529997 | 2_3:-1710721 | Msa0270480:CDS |
| TAGTCCTATCTAAGCAATCT+CGG | 0.530700 | 2_3:+1710127 | None:intergenic |
| ACATCCAATCCAATGGTTGA+AGG | 0.531051 | 2_3:-1710537 | Msa0270480:CDS |
| TGTTAGTAATGTACCACACT+TGG | 0.532268 | 2_3:-1710466 | Msa0270480:CDS |
| GTATGGTTATTTCACTTGAT+CGG | 0.532614 | 2_3:-1710221 | Msa0270480:CDS |
| GCTCGAGCAGAAACTAGAAC+AGG | 0.536024 | 2_3:-1710255 | Msa0270480:CDS |
| AATGTGGACACTGTTGATCT+TGG | 0.536764 | 2_3:-1710171 | Msa0270480:CDS |
| CAATCTCCTGCAAACAATGA+TGG | 0.539918 | 2_3:-1709924 | Msa0270480:CDS |
| TGTATGCCATCATGGGTTGC+TGG | 0.540590 | 2_3:+1709707 | None:intergenic |
| ACGTGATTACTTAACAAAAG+AGG | 0.543276 | 2_3:-1710277 | Msa0270480:CDS |
| CAATCTCCAGCAACCCATGA+TGG | 0.544924 | 2_3:-1709713 | Msa0270480:CDS |
| TGCCCAGAGGTGGTGATGAA+TGG | 0.545146 | 2_3:+1710719 | None:intergenic |
| GTACACATGCTTTGAATGGA+AGG | 0.545764 | 2_3:-1709902 | Msa0270480:CDS |
| CCAAGCATGTATGCCATCAT+GGG | 0.548509 | 2_3:+1709700 | None:intergenic |
| AATGAGTATAGTAGGAAATG+TGG | 0.549866 | 2_3:-1710402 | Msa0270480:CDS |
| TGGACACTGTTGATCTTGGT+GGG | 0.560318 | 2_3:-1710167 | Msa0270480:CDS |
| ATCTTACCGGTGCCCAGAGG+TGG | 0.565589 | 2_3:+1710709 | None:intergenic |
| GGAAATGGACTTTGAGTCTG+AGG | 0.567953 | 2_3:-1710445 | Msa0270480:CDS |
| ATTATAAAATTCATATGCCA+AGG | 0.568982 | 2_3:+1710422 | None:intergenic |
| TTTGAGATGCCATCAAAGCA+TGG | 0.583887 | 2_3:+1709651 | None:intergenic |
| AAAATTTGTGTGCTCCAAAG+AGG | 0.589431 | 2_3:-1710319 | Msa0270480:CDS |
| TCATCACCACCTCTGGGCAC+CGG | 0.597509 | 2_3:-1710715 | Msa0270480:intron |
| GATGGCATACATGCTTGGAA+TGG | 0.609086 | 2_3:-1709695 | Msa0270480:CDS |
| CCTTTAACAGAAGCTAACAA+TGG | 0.614189 | 2_3:-1709605 | Msa0270480:CDS |
| GAATATTACATCCAATCCAA+TGG | 0.614280 | 2_3:-1710544 | Msa0270480:CDS |
| AAATTTGTGTGCTCCAAAGA+GGG | 0.614397 | 2_3:-1710318 | Msa0270480:CDS |
| TCAAAGTCCATTTCCAAGTG+TGG | 0.632466 | 2_3:+1710453 | None:intergenic |
| TGCTCCAAAGAGGGTAGACG+CGG | 0.660484 | 2_3:-1710309 | Msa0270480:CDS |
| GTGAATGATATCGTGCAACA+GGG | 0.667513 | 2_3:-1710501 | Msa0270480:CDS |
| GGACACTGTTGATCTTGGTG+GGG | 0.681245 | 2_3:-1710166 | Msa0270480:CDS |
| AAAATCTTACCGGTGCCCAG+AGG | 0.742952 | 2_3:+1710706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATAATGAGTATAGT+AGG | - | chr2_3:1709906-1709925 | Msa0270480:CDS | 15.0% |
| !!! | AATTTTATAATGAGTATAGT+AGG | - | chr2_3:1709906-1709925 | Msa0270480:CDS | 15.0% |
| !!! | CATGAATATTTGAAAGTATT+TGG | - | chr2_3:1709664-1709683 | Msa0270480:CDS | 20.0% |
| !! | TATTCACATTATCTAGAAAA+TGG | + | chr2_3:1709757-1709776 | None:intergenic | 20.0% |
| !! | ATTATAAAATTCATATGCCA+AGG | + | chr2_3:1709897-1709916 | None:intergenic | 20.0% |
| !!! | CATGAATATTTGAAAGTATT+TGG | - | chr2_3:1709664-1709683 | Msa0270480:CDS | 20.0% |
| !! | TATTCACATTATCTAGAAAA+TGG | + | chr2_3:1709757-1709776 | None:intergenic | 20.0% |
| !! | ATTATAAAATTCATATGCCA+AGG | + | chr2_3:1709897-1709916 | None:intergenic | 20.0% |
| !!! | TTTTATTTGCATATTCTCGA+CGG | + | chr2_3:1709949-1709968 | None:intergenic | 25.0% |
| ! | GCAAATAAAAGCAAAAAAGA+TGG | - | chr2_3:1709959-1709978 | Msa0270480:intron | 25.0% |
| ! | GAAGATTGGAAATGAAAAAA+AGG | - | chr2_3:1710117-1710136 | Msa0270480:CDS | 25.0% |
| ! | TGGATAAAAAGAGACAAAAA+AGG | - | chr2_3:1710242-1710261 | Msa0270480:CDS | 25.0% |
| ! | GACTAAGAGAAAGAAAAAAT+TGG | - | chr2_3:1710273-1710292 | Msa0270480:CDS | 25.0% |
| ! | GATAGCAATACTAAAATTCT+AGG | + | chr2_3:1710331-1710350 | None:intergenic | 25.0% |
| !!! | TGTTACTTTTACTACTATGT+AGG | - | chr2_3:1710367-1710386 | Msa0270480:CDS | 25.0% |
| ! | AAGGAAGAGAAAGAAAAAAT+TGG | - | chr2_3:1710433-1710452 | Msa0270480:CDS | 25.0% |
| !! | TGTTACTTCTACTATTATGT+AGG | - | chr2_3:1710578-1710597 | Msa0270480:intron | 25.0% |
| !!! | TTTTATTTGCATATTCTCGA+CGG | + | chr2_3:1709949-1709968 | None:intergenic | 25.0% |
| ! | GCAAATAAAAGCAAAAAAGA+TGG | - | chr2_3:1709959-1709978 | Msa0270480:intron | 25.0% |
| ! | GAAGATTGGAAATGAAAAAA+AGG | - | chr2_3:1710117-1710136 | Msa0270480:CDS | 25.0% |
| ! | TGGATAAAAAGAGACAAAAA+AGG | - | chr2_3:1710242-1710261 | Msa0270480:CDS | 25.0% |
| ! | GACTAAGAGAAAGAAAAAAT+TGG | - | chr2_3:1710273-1710292 | Msa0270480:CDS | 25.0% |
| ! | GATAGCAATACTAAAATTCT+AGG | + | chr2_3:1710331-1710350 | None:intergenic | 25.0% |
| !!! | TGTTACTTTTACTACTATGT+AGG | - | chr2_3:1710367-1710386 | Msa0270480:CDS | 25.0% |
| ! | AAGGAAGAGAAAGAAAAAAT+TGG | - | chr2_3:1710433-1710452 | Msa0270480:CDS | 25.0% |
| !! | TGTTACTTCTACTATTATGT+AGG | - | chr2_3:1710578-1710597 | Msa0270480:intron | 25.0% |
| GACAAAGAACAAAATCTTAC+CGG | + | chr2_3:1709623-1709642 | None:intergenic | 30.0% | |
| GAATATTACATCCAATCCAA+TGG | - | chr2_3:1709772-1709791 | Msa0270480:intron | 30.0% | |
| AATGAGTATAGTAGGAAATG+TGG | - | chr2_3:1709914-1709933 | Msa0270480:CDS | 30.0% | |
| ! | TATAGTAGGAAATGTGGTTT+TGG | - | chr2_3:1709920-1709939 | Msa0270480:CDS | 30.0% |
| ACGTGATTACTTAACAAAAG+AGG | - | chr2_3:1710039-1710058 | Msa0270480:intron | 30.0% | |
| ! | GTATGGTTATTTCACTTGAT+CGG | - | chr2_3:1710095-1710114 | Msa0270480:CDS | 30.0% |
| TGAAAAAAAGGATCAGAATG+TGG | - | chr2_3:1710129-1710148 | Msa0270480:CDS | 30.0% | |
| GCTTAGATAGGACTAAAAAA+AGG | - | chr2_3:1710197-1710216 | Msa0270480:CDS | 30.0% | |
| CACACGTTAAAAAGAAAGTA+TGG | + | chr2_3:1710468-1710487 | None:intergenic | 30.0% | |
| TCCAAATGTCAAATGAGATT+AGG | - | chr2_3:1710754-1710773 | Msa0270480:CDS | 30.0% | |
| TCCTAATCTCATTTGACATT+TGG | + | chr2_3:1710758-1710777 | None:intergenic | 30.0% | |
| GACAAAGAACAAAATCTTAC+CGG | + | chr2_3:1709623-1709642 | None:intergenic | 30.0% | |
| GAATATTACATCCAATCCAA+TGG | - | chr2_3:1709772-1709791 | Msa0270480:intron | 30.0% | |
| AATGAGTATAGTAGGAAATG+TGG | - | chr2_3:1709914-1709933 | Msa0270480:CDS | 30.0% | |
| ! | TATAGTAGGAAATGTGGTTT+TGG | - | chr2_3:1709920-1709939 | Msa0270480:CDS | 30.0% |
| ACGTGATTACTTAACAAAAG+AGG | - | chr2_3:1710039-1710058 | Msa0270480:intron | 30.0% | |
| ! | GTATGGTTATTTCACTTGAT+CGG | - | chr2_3:1710095-1710114 | Msa0270480:CDS | 30.0% |
| TGAAAAAAAGGATCAGAATG+TGG | - | chr2_3:1710129-1710148 | Msa0270480:CDS | 30.0% | |
| GCTTAGATAGGACTAAAAAA+AGG | - | chr2_3:1710197-1710216 | Msa0270480:CDS | 30.0% | |
| CACACGTTAAAAAGAAAGTA+TGG | + | chr2_3:1710468-1710487 | None:intergenic | 30.0% | |
| TCCAAATGTCAAATGAGATT+AGG | - | chr2_3:1710754-1710773 | Msa0270480:CDS | 30.0% | |
| TCCTAATCTCATTTGACATT+TGG | + | chr2_3:1710758-1710777 | None:intergenic | 30.0% | |
| ! | TTTTCTACACCTTCAACCAT+TGG | + | chr2_3:1709791-1709810 | None:intergenic | 35.0% |
| ! | GGTTGAAGGTGTAGAAAAAT+TGG | - | chr2_3:1709793-1709812 | Msa0270480:intron | 35.0% |
| TGTTAGTAATGTACCACACT+TGG | - | chr2_3:1709850-1709869 | Msa0270480:intron | 35.0% | |
| TAATGTACCACACTTGGAAA+TGG | - | chr2_3:1709856-1709875 | Msa0270480:intron | 35.0% | |
| AAAATTTGTGTGCTCCAAAG+AGG | - | chr2_3:1709997-1710016 | Msa0270480:intron | 35.0% | |
| AAATTTGTGTGCTCCAAAGA+GGG | - | chr2_3:1709998-1710017 | Msa0270480:intron | 35.0% | |
| ATTTCACTTGATCGGAAGAT+TGG | - | chr2_3:1710103-1710122 | Msa0270480:CDS | 35.0% | |
| TAGTCCTATCTAAGCAATCT+CGG | + | chr2_3:1710192-1710211 | None:intergenic | 35.0% | |
| !! | CTAAAAAAAGGCATCCAACT+TGG | - | chr2_3:1710209-1710228 | Msa0270480:CDS | 35.0% |
| ! | CCATTGTTAGCTTCTGTTAA+AGG | + | chr2_3:1710714-1710733 | None:intergenic | 35.0% |
| CCTTTAACAGAAGCTAACAA+TGG | - | chr2_3:1710711-1710730 | Msa0270480:intron | 35.0% | |
| ATGGAAGTCTACATGAGATT+AGG | - | chr2_3:1710730-1710749 | Msa0270480:CDS | 35.0% | |
| ! | TTTTCTACACCTTCAACCAT+TGG | + | chr2_3:1709791-1709810 | None:intergenic | 35.0% |
| ! | GGTTGAAGGTGTAGAAAAAT+TGG | - | chr2_3:1709793-1709812 | Msa0270480:intron | 35.0% |
| TGTTAGTAATGTACCACACT+TGG | - | chr2_3:1709850-1709869 | Msa0270480:intron | 35.0% | |
| TAATGTACCACACTTGGAAA+TGG | - | chr2_3:1709856-1709875 | Msa0270480:intron | 35.0% | |
| AAAATTTGTGTGCTCCAAAG+AGG | - | chr2_3:1709997-1710016 | Msa0270480:intron | 35.0% | |
| AAATTTGTGTGCTCCAAAGA+GGG | - | chr2_3:1709998-1710017 | Msa0270480:intron | 35.0% | |
| ATTTCACTTGATCGGAAGAT+TGG | - | chr2_3:1710103-1710122 | Msa0270480:CDS | 35.0% | |
| TAGTCCTATCTAAGCAATCT+CGG | + | chr2_3:1710192-1710211 | None:intergenic | 35.0% | |
| !! | CTAAAAAAAGGCATCCAACT+TGG | - | chr2_3:1710209-1710228 | Msa0270480:CDS | 35.0% |
| ! | CCATTGTTAGCTTCTGTTAA+AGG | + | chr2_3:1710714-1710733 | None:intergenic | 35.0% |
| CCTTTAACAGAAGCTAACAA+TGG | - | chr2_3:1710711-1710730 | Msa0270480:intron | 35.0% | |
| ATGGAAGTCTACATGAGATT+AGG | - | chr2_3:1710730-1710749 | Msa0270480:CDS | 35.0% | |
| ACATCCAATCCAATGGTTGA+AGG | - | chr2_3:1709779-1709798 | Msa0270480:intron | 40.0% | |
| TACACCTTCAACCATTGGAT+TGG | + | chr2_3:1709786-1709805 | None:intergenic | 40.0% | |
| GTGAATGATATCGTGCAACA+GGG | - | chr2_3:1709815-1709834 | Msa0270480:intron | 40.0% | |
| TCAAAGTCCATTTCCAAGTG+TGG | + | chr2_3:1709866-1709885 | None:intergenic | 40.0% | |
| AACAGGATGTTTAGCACGTA+TGG | - | chr2_3:1710078-1710097 | Msa0270480:CDS | 40.0% | |
| AATGTGGACACTGTTGATCT+TGG | - | chr2_3:1710145-1710164 | Msa0270480:CDS | 40.0% | |
| ! | TCCAACTTGGCTTGAGAAAT+TGG | - | chr2_3:1710222-1710241 | Msa0270480:CDS | 40.0% |
| TCCAATTTCTCAAGCCAAGT+TGG | + | chr2_3:1710226-1710245 | None:intergenic | 40.0% | |
| CAATCTCCTGCAAACAATGA+TGG | - | chr2_3:1710392-1710411 | Msa0270480:CDS | 40.0% | |
| TGTGTACCATCATTGTTTGC+AGG | + | chr2_3:1710401-1710420 | None:intergenic | 40.0% | |
| ! | GATGGTACACATGCTTTGAA+TGG | - | chr2_3:1710410-1710429 | Msa0270480:CDS | 40.0% |
| ! | GTACACATGCTTTGAATGGA+AGG | - | chr2_3:1710414-1710433 | Msa0270480:CDS | 40.0% |
| AATGGAAGCCAATCTGGATA+TGG | - | chr2_3:1710639-1710658 | Msa0270480:intron | 40.0% | |
| ATATGGAAGCCATGCTTTGA+TGG | - | chr2_3:1710656-1710675 | Msa0270480:intron | 40.0% | |
| ! | TTTGAGATGCCATCAAAGCA+TGG | + | chr2_3:1710668-1710687 | None:intergenic | 40.0% |
| ACATCCAATCCAATGGTTGA+AGG | - | chr2_3:1709779-1709798 | Msa0270480:intron | 40.0% | |
| TACACCTTCAACCATTGGAT+TGG | + | chr2_3:1709786-1709805 | None:intergenic | 40.0% | |
| GTGAATGATATCGTGCAACA+GGG | - | chr2_3:1709815-1709834 | Msa0270480:intron | 40.0% | |
| TCAAAGTCCATTTCCAAGTG+TGG | + | chr2_3:1709866-1709885 | None:intergenic | 40.0% | |
| AACAGGATGTTTAGCACGTA+TGG | - | chr2_3:1710078-1710097 | Msa0270480:CDS | 40.0% | |
| AATGTGGACACTGTTGATCT+TGG | - | chr2_3:1710145-1710164 | Msa0270480:CDS | 40.0% | |
| ! | TCCAACTTGGCTTGAGAAAT+TGG | - | chr2_3:1710222-1710241 | Msa0270480:CDS | 40.0% |
| TCCAATTTCTCAAGCCAAGT+TGG | + | chr2_3:1710226-1710245 | None:intergenic | 40.0% | |
| CAATCTCCTGCAAACAATGA+TGG | - | chr2_3:1710392-1710411 | Msa0270480:CDS | 40.0% | |
| TGTGTACCATCATTGTTTGC+AGG | + | chr2_3:1710401-1710420 | None:intergenic | 40.0% | |
| ! | GATGGTACACATGCTTTGAA+TGG | - | chr2_3:1710410-1710429 | Msa0270480:CDS | 40.0% |
| ! | GTACACATGCTTTGAATGGA+AGG | - | chr2_3:1710414-1710433 | Msa0270480:CDS | 40.0% |
| AATGGAAGCCAATCTGGATA+TGG | - | chr2_3:1710639-1710658 | Msa0270480:intron | 40.0% | |
| ATATGGAAGCCATGCTTTGA+TGG | - | chr2_3:1710656-1710675 | Msa0270480:intron | 40.0% | |
| ! | TTTGAGATGCCATCAAAGCA+TGG | + | chr2_3:1710668-1710687 | None:intergenic | 40.0% |
| GGTGAATGATATCGTGCAAC+AGG | - | chr2_3:1709814-1709833 | Msa0270480:intron | 45.0% | |
| ! | GGAAATGGACTTTGAGTCTG+AGG | - | chr2_3:1709871-1709890 | Msa0270480:intron | 45.0% |
| TGGACACTGTTGATCTTGGT+GGG | - | chr2_3:1710149-1710168 | Msa0270480:CDS | 45.0% | |
| AGAGCCGAGATTGCTTAGAT+AGG | - | chr2_3:1710185-1710204 | Msa0270480:CDS | 45.0% | |
| CCAAGCATGTATGCCATCAT+GGG | + | chr2_3:1710619-1710638 | None:intergenic | 45.0% | |
| TCCAAGCATGTATGCCATCA+TGG | + | chr2_3:1710620-1710639 | None:intergenic | 45.0% | |
| GATGGCATACATGCTTGGAA+TGG | - | chr2_3:1710621-1710640 | Msa0270480:intron | 45.0% | |
| CATGGCTTCCATATCCAGAT+TGG | + | chr2_3:1710650-1710669 | None:intergenic | 45.0% | |
| GGTGAATGATATCGTGCAAC+AGG | - | chr2_3:1709814-1709833 | Msa0270480:intron | 45.0% | |
| ! | GGAAATGGACTTTGAGTCTG+AGG | - | chr2_3:1709871-1709890 | Msa0270480:intron | 45.0% |
| TGGACACTGTTGATCTTGGT+GGG | - | chr2_3:1710149-1710168 | Msa0270480:CDS | 45.0% | |
| AGAGCCGAGATTGCTTAGAT+AGG | - | chr2_3:1710185-1710204 | Msa0270480:CDS | 45.0% | |
| CCAAGCATGTATGCCATCAT+GGG | + | chr2_3:1710619-1710638 | None:intergenic | 45.0% | |
| TCCAAGCATGTATGCCATCA+TGG | + | chr2_3:1710620-1710639 | None:intergenic | 45.0% | |
| GATGGCATACATGCTTGGAA+TGG | - | chr2_3:1710621-1710640 | Msa0270480:intron | 45.0% | |
| CATGGCTTCCATATCCAGAT+TGG | + | chr2_3:1710650-1710669 | None:intergenic | 45.0% | |
| TCACCATTCATCACCACCTC+TGG | - | chr2_3:1709594-1709613 | Msa0270480:CDS | 50.0% | |
| CACCATTCATCACCACCTCT+GGG | - | chr2_3:1709595-1709614 | Msa0270480:CDS | 50.0% | |
| AAAATCTTACCGGTGCCCAG+AGG | + | chr2_3:1709613-1709632 | None:intergenic | 50.0% | |
| GCTCGAGCAGAAACTAGAAC+AGG | - | chr2_3:1710061-1710080 | Msa0270480:CDS | 50.0% | |
| GTGGACACTGTTGATCTTGG+TGG | - | chr2_3:1710148-1710167 | Msa0270480:CDS | 50.0% | |
| GGACACTGTTGATCTTGGTG+GGG | - | chr2_3:1710150-1710169 | Msa0270480:CDS | 50.0% | |
| CAATCTCCAGCAACCCATGA+TGG | - | chr2_3:1710603-1710622 | Msa0270480:intron | 50.0% | |
| ! | TGTATGCCATCATGGGTTGC+TGG | + | chr2_3:1710612-1710631 | None:intergenic | 50.0% |
| CCCATGATGGCATACATGCT+TGG | - | chr2_3:1710616-1710635 | Msa0270480:intron | 50.0% | |
| GCTTGGAATGGAAGCCAATC+TGG | - | chr2_3:1710633-1710652 | Msa0270480:intron | 50.0% | |
| TCACCATTCATCACCACCTC+TGG | - | chr2_3:1709594-1709613 | Msa0270480:CDS | 50.0% | |
| CACCATTCATCACCACCTCT+GGG | - | chr2_3:1709595-1709614 | Msa0270480:CDS | 50.0% | |
| AAAATCTTACCGGTGCCCAG+AGG | + | chr2_3:1709613-1709632 | None:intergenic | 50.0% | |
| GCTCGAGCAGAAACTAGAAC+AGG | - | chr2_3:1710061-1710080 | Msa0270480:CDS | 50.0% | |
| GTGGACACTGTTGATCTTGG+TGG | - | chr2_3:1710148-1710167 | Msa0270480:CDS | 50.0% | |
| GGACACTGTTGATCTTGGTG+GGG | - | chr2_3:1710150-1710169 | Msa0270480:CDS | 50.0% | |
| CAATCTCCAGCAACCCATGA+TGG | - | chr2_3:1710603-1710622 | Msa0270480:intron | 50.0% | |
| ! | TGTATGCCATCATGGGTTGC+TGG | + | chr2_3:1710612-1710631 | None:intergenic | 50.0% |
| CCCATGATGGCATACATGCT+TGG | - | chr2_3:1710616-1710635 | Msa0270480:intron | 50.0% | |
| GCTTGGAATGGAAGCCAATC+TGG | - | chr2_3:1710633-1710652 | Msa0270480:intron | 50.0% | |
| ! | TGCCCAGAGGTGGTGATGAA+TGG | + | chr2_3:1709600-1709619 | None:intergenic | 55.0% |
| ! | GGACTTTGAGTCTGAGGCCT+TGG | - | chr2_3:1709877-1709896 | Msa0270480:intron | 55.0% |
| TGCTCCAAAGAGGGTAGACG+CGG | - | chr2_3:1710007-1710026 | Msa0270480:intron | 55.0% | |
| ! | TGCCCAGAGGTGGTGATGAA+TGG | + | chr2_3:1709600-1709619 | None:intergenic | 55.0% |
| ! | GGACTTTGAGTCTGAGGCCT+TGG | - | chr2_3:1709877-1709896 | Msa0270480:intron | 55.0% |
| TGCTCCAAAGAGGGTAGACG+CGG | - | chr2_3:1710007-1710026 | Msa0270480:intron | 55.0% | |
| TCATCACCACCTCTGGGCAC+CGG | - | chr2_3:1709601-1709620 | Msa0270480:CDS | 60.0% | |
| ATCTTACCGGTGCCCAGAGG+TGG | + | chr2_3:1709610-1709629 | None:intergenic | 60.0% | |
| GACACCGCGTCTACCCTCTT+TGG | + | chr2_3:1710014-1710033 | None:intergenic | 60.0% | |
| TCATCACCACCTCTGGGCAC+CGG | - | chr2_3:1709601-1709620 | Msa0270480:CDS | 60.0% | |
| ATCTTACCGGTGCCCAGAGG+TGG | + | chr2_3:1709610-1709629 | None:intergenic | 60.0% | |
| GACACCGCGTCTACCCTCTT+TGG | + | chr2_3:1710014-1710033 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 1709556 | 1710782 | 1709556 | ID=Msa0270480;Name=Msa0270480 |
| chr2_3 | mRNA | 1709556 | 1710782 | 1709556 | ID=Msa0270480-mRNA-1;Parent=Msa0270480;Name=Msa0270480-mRNA-1;_AED=0.23;_eAED=0.26;_QI=0|0|0|0.75|1|1|4|0|281 |
| chr2_3 | exon | 1710716 | 1710782 | 1710716 | ID=Msa0270480-mRNA-1:exon:838;Parent=Msa0270480-mRNA-1 |
| chr2_3 | exon | 1710044 | 1710573 | 1710044 | ID=Msa0270480-mRNA-1:exon:837;Parent=Msa0270480-mRNA-1 |
| chr2_3 | exon | 1709884 | 1709949 | 1709884 | ID=Msa0270480-mRNA-1:exon:836;Parent=Msa0270480-mRNA-1 |
| chr2_3 | exon | 1709556 | 1709738 | 1709556 | ID=Msa0270480-mRNA-1:exon:835;Parent=Msa0270480-mRNA-1 |
| chr2_3 | CDS | 1710716 | 1710782 | 1710716 | ID=Msa0270480-mRNA-1:cds;Parent=Msa0270480-mRNA-1 |
| chr2_3 | CDS | 1710044 | 1710573 | 1710044 | ID=Msa0270480-mRNA-1:cds;Parent=Msa0270480-mRNA-1 |
| chr2_3 | CDS | 1709884 | 1709949 | 1709884 | ID=Msa0270480-mRNA-1:cds;Parent=Msa0270480-mRNA-1 |
| chr2_3 | CDS | 1709556 | 1709738 | 1709556 | ID=Msa0270480-mRNA-1:cds;Parent=Msa0270480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
