AlfalfaGEDB | Msa0747180

M. sativa cultivar zhongmu-4 / Msa0747180

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747180	XP_024629994.1	66.914	810	214	7	23	796	14	805	0.0	1092

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747180	sp\|Q9SZL8\|FRS5_ARATH	33.594	640	405	9	56	685	73	702	7.65e-117	375

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747180	A0A3Q7Y261	73.453	727	160	4	25	721	1	724	0.0	1082

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0747180	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0070230	Msa0747180	0.905483	4.092726e-80	-8.615850e-47
Msa0160900	Msa0747180	0.893144	8.261668e-75	-8.615850e-47
Msa0270480	Msa0747180	0.970050	4.956320e-131	-8.615850e-47
Msa0309040	Msa0747180	0.937787	1.959928e-98	-8.615850e-47
Msa0747180	Msa0875920	0.871872	4.908256e-67	-8.615850e-47
Msa0747180	Msa1033330	0.841068	5.943919e-58	-8.615850e-47
Msa0747180	Msa1138300	0.805375	1.376039e-49	-8.615850e-47

Showing 1 to 7 of 7 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747180	MtrunA17_Chr3g0082121	71.019	697	161	3	22	685	5	693	0.0	1008
Msa0747180	MtrunA17_Chr1g0164591	76.190	315	67	1	134	448	1	307	3.64e-179	516
Msa0747180	MtrunA17_Chr2g0324011	46.246	586	292	6	50	622	4	579	1.57e-175	518
Msa0747180	MtrunA17_Chr6g0458391	42.004	569	305	7	49	612	218	766	4.14e-157	476
Msa0747180	MtrunA17_Chr6g0458391	34.161	161	101	3	27	187	65	220	2.44e-20	96.7
Msa0747180	MtrunA17_Chr1g0203721	38.012	684	372	10	24	662	27	703	2.63e-152	468
Msa0747180	MtrunA17_Chr5g0448761	35.511	597	364	8	56	640	60	647	1.79e-122	387
Msa0747180	MtrunA17_Chr1g0202341	36.427	571	340	9	56	611	47	609	4.92e-114	362
Msa0747180	MtrunA17_Chr8g0363841	34.532	556	345	8	68	611	29	577	1.54e-109	349
Msa0747180	MtrunA17_Chr5g0401121	93.210	162	11	0	1	162	1	162	5.01e-103	314

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0747180	AT4G38180.1	33.594	640	405	9	56	685	73	702	7.78e-118	375
Msa0747180	AT4G15090.1	32.270	564	373	6	56	613	51	611	2.13e-95	316
Msa0747180	AT4G15090.5	32.270	564	373	6	56	613	51	611	2.13e-95	316
Msa0747180	AT4G15090.3	32.270	564	373	6	56	613	51	611	2.13e-95	316
Msa0747180	AT4G15090.2	32.270	564	373	6	56	613	51	611	2.13e-95	316
Msa0747180	AT4G15090.4	32.270	564	373	6	56	613	51	611	2.13e-95	316
Msa0747180	AT3G22170.2	32.056	574	347	9	56	611	70	618	5.72e-88	296
Msa0747180	AT3G22170.1	32.056	574	347	9	56	611	70	618	5.72e-88	296
Msa0747180	AT2G27110.2	31.542	577	352	12	56	623	49	591	5.50e-82	280
Msa0747180	AT2G27110.1	31.542	577	352	12	56	623	49	591	5.50e-82	280

Showing 1 to 10 of 55 entries

Previous1 2 3 4 5 6Next

Find 133 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTACCGGTGCCCAG+AGG	0.742952	5_1:-70823812	None:intergenic
AAAATTTGTGTGCTCCAAAG+AGG	0.589431	5_1:+70824195	Msa0747180:CDS
AAAGAGTTGTCAACGGAAAG+CGG	0.589356	5_1:+70825331	Msa0747180:CDS
AAATAAGAATTATCGTCCGT+TGG	0.526037	5_1:+70824762	Msa0747180:CDS
AAATTTGTGTGCTCCAAAGA+GGG	0.614397	5_1:+70824196	Msa0747180:CDS
AACAGATCAAGATGCAGCAA+TGG	0.573110	5_1:+70824927	Msa0747180:CDS
AACAGGATGTTTAGCACGTA+TGG	0.468473	5_1:+70824276	Msa0747180:CDS
AACGTTGGCCAAGAGATGCA+AGG	0.619456	5_1:+70825706	Msa0747180:CDS
AATAAGAATTATCGTCCGTT+GGG	0.484650	5_1:+70824763	Msa0747180:CDS
AATGAGTATAGTAGGAAATG+TGG	0.549866	5_1:+70824112	Msa0747180:CDS

Showing 1 to 10 of 133 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GACAAAGAACAAAATCTTAC+CGG	-	chr5_1:70823825-70823844	None:intergenic	30.0%
GAATATTACATCCAATCCAA+TGG	+	chr5_1:70823970-70823989	Msa0747180:CDS	30.0%
AATGAGTATAGTAGGAAATG+TGG	+	chr5_1:70824112-70824131	Msa0747180:CDS	30.0%
ACGTGATTACTTAACAAAAG+AGG	+	chr5_1:70824237-70824256	Msa0747180:CDS	30.0%
ATCATATAAACATACTCAGC+TGG	-	chr5_1:70824376-70824395	None:intergenic	30.0%
TTCATCAGCCAATACAATTT+GGG	-	chr5_1:70824434-70824453	None:intergenic	30.0%
ATTCATCAGCCAATACAATT+TGG	-	chr5_1:70824435-70824454	None:intergenic	30.0%
AAATAAGAATTATCGTCCGT+TGG	+	chr5_1:70824762-70824781	Msa0747180:CDS	30.0%
AATAAGAATTATCGTCCGTT+GGG	+	chr5_1:70824763-70824782	Msa0747180:CDS	30.0%
CATAAACAATTGTTTGTCTG+TGG	-	chr5_1:70824810-70824829	None:intergenic	30.0%

Showing 1 to 10 of 175 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	70823758	70826623	70823758	ID=Msa0747180;Name=Msa0747180
chr5_1	mRNA	70823758	70826623	70823758	ID=Msa0747180-mRNA-1;Parent=Msa0747180;Name=Msa0747180-mRNA-1;_AED=0.24;_eAED=0.32;_QI=0\|0\|0\|0.8\|1\|1\|5\|0\|803
chr5_1	exon	70823758	70823824	70823758	ID=Msa0747180-mRNA-1:exon:20890;Parent=Msa0747180-mRNA-1
chr5_1	exon	70823963	70825735	70823963	ID=Msa0747180-mRNA-1:exon:20891;Parent=Msa0747180-mRNA-1
chr5_1	exon	70825822	70826144	70825822	ID=Msa0747180-mRNA-1:exon:20892;Parent=Msa0747180-mRNA-1
chr5_1	exon	70826239	70826304	70826239	ID=Msa0747180-mRNA-1:exon:20893;Parent=Msa0747180-mRNA-1
chr5_1	exon	70826441	70826623	70826441	ID=Msa0747180-mRNA-1:exon:20894;Parent=Msa0747180-mRNA-1
chr5_1	CDS	70823758	70823824	70823758	ID=Msa0747180-mRNA-1:cds;Parent=Msa0747180-mRNA-1
chr5_1	CDS	70823963	70825735	70823963	ID=Msa0747180-mRNA-1:cds;Parent=Msa0747180-mRNA-1
chr5_1	CDS	70825822	70826144	70825822	ID=Msa0747180-mRNA-1:cds;Parent=Msa0747180-mRNA-1
chr5_1	CDS	70826239	70826304	70826239	ID=Msa0747180-mRNA-1:cds;Parent=Msa0747180-mRNA-1
chr5_1	CDS	70826441	70826623	70826441	ID=Msa0747180-mRNA-1:cds;Parent=Msa0747180-mRNA-1

Gene Sequence

>Msa0747180

ATGGTAGAAACGACACACGTAGAACATGATGCAAATCTTCACCATTCATCACCACCTCTGGGCACCGATAATGTGAATATTACATCCAATCCAATGGTTGAAGGTGTAGAAAAATTGGTGAATGATATCGTGCAACAGGGAAAAGAGAGTACTGTTAGTAATGTACCACACTTGGAAATGGAGTTTGAGTCTGAGGCCTTGGCATATGAATTTTATAATGAGTATAGTAGGAAATGTGGTTTTGGTATCCGTCGAGAATATGCAAATAAAAGCAAAAAAGATGGAGTTCTTACTTCAAGAAAATTTGTGTGCTCCAAAGAGGGTAGACGCGGTGTCGACAAACGTGATTACTTAACAAAAGAGGCTCGAGCAGAAACTAGAACAGGATGTTTAGCACGTATGGTTATTTCACTTGATCGGAAGATTGGAAAATACAAGGTTATTGACTTTGTAGCGGAACATAATCACCTTCTTCTGCCAGCTGAGTATGTTTATATGATTCGCTCTCATCGACACATATCTGAGTCACAAGCATCCCAAATTGTATTGGCTGATGAATCTGGATTGAAACCAAAAGATTTTCATGAATTTGTGTCAAAACAAGCTGGTGGAATAAACACTGTTGGTTACACAAGACAAGACCATAGAAATTTGCTTCGCACTAAAAGGAACCACTCACTAAGGTATGGTGAAGTAGGTGCATTACTAATACATTTCAAAAAGCAAAGTGAAAATCCTTCATTCTTTTATGAGTTTCAGATGGATGTTGAAGAGCAAATAACAAACATATTTTGGGCCGATGCACAAATGATAAATGATTATGGGTACTTTGGTGATGTTGTCATTTTTGACACCACATTCAAGACAAATAAGAATTATCGTCCGTTGGGAGTATTTGTTGGCCTTAATAGCCACAGACAAACAATTGTTTATGGGGCAGCATTGTTATATGATGAAACAATCCCTTCTTTTCAATGGTTATTTGAAACCTTTCTCAAAGCAATGGGTGGGAAAAAGCCTAAAACCATTCTAACAGATCAAGATGCAGCAATGGCTAAGGCTCTTTCTATAGTCATGCCAGAAACATTTCATGGATTGTGCACTTGGCATATAAGGGAAAATGCCCTAAGGCATGTGAATCATCTATATCAACAGAGCTCACAATTCTGCTCAGATTTTGAAGCATGCATTGATCTACACGAAGAGGAAGAAGAATTTTTGAGTGGATGGGAGGCTTTACTAGTTGAGCATAATGTTTCTAAAGACTCATGGCTCCATAATATTTTTCGATTCAAGGAAAAATGGGCATGGGCTTATGTGCGAAAGACTTTCACTGCAGGTATGAGATCTACTCAATTAAGTGAGAGTTTTAATGCTGATTTAAAAAATCATTTGAAGTCAGATTTAAATTTGATACAATTTTTCACACACTTTGAAAGAGTTGTCAACGGAAAGCGGAATAATGAGTCAGAAGCTGAATATGAGTCGAGACAAAAGTTGCCAAGATTGAAAATGAAAAAGATCCCTATGCTTGTACAAGCCGGCAATGTTTACACTACAAGAATTTTTGAGGAATTCCAAGATGAATATGAGGAATGTCAAGCTTCTTGTTTAAGAAATTTGAAAGAAGGGTCATATGTTGTTACAAATTATGATAACAGCAAGGAGCGGATAGTAGTAGCGAATCATATGGATAAAACAGTTGCTTGTGATTGTCGAAAGTTTGAGACACATGGAATCTTATGCAGTCATGCTTTGAAAGTTTTAGATTTTATGAATGTTAAGCTAATTCCTCAGCAATATATACTAAAACGTTGGCCAAGAGATGCAAGGTTGGGATTTAAATTGAGCAATAGAGCATCAGAATCTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCTCATAAAATAGTTGAAGATATGCTGACTAAAAAGTCTATGGATGGAGAGTCAATTGGAATGAGTCATGTGTCTATATCAATTGCAAATGAAAAAAAGGATCAGAATGTGGACACTGTTGATCTTGGTGGGGCAAAAGCAATAAAGAGCCGAGATTGCTTAGATAGGACTAAAAAAAGGCATCCAACTTGGCTTGAGAAATTGGATAAAAAGAGACAAAAAAGGCTATCACAGACTAAGAGAAAGAAAAAATTGGAACAATCTCCTGCAAACAATGATGGTACACATGCTTTGAATGGAAGGAAGAGAAAGAAAAAATTGGAACAATCTCCAGCAACCCATGATGGCATACATGCTTGGAATGGAAGCCAATCTGGATATGGAAGCCATGCTTTGATGGCATCTCAAACTGAGAATGCAAGTCGACATTTACCTTTAACAGAAGCTGACAATGGAAGTCTACATGAGATTAGGATCCAAATGTCAAATGAGATTAGGATCTAA

Protein sequence

>Msa0747180

MVETTHVEHDANLHHSSPPLGTDNVNITSNPMVEGVEKLVNDIVQQGKESTVSNVPHLEMEFESEALAYEFYNEYSRKCGFGIRREYANKSKKDGVLTSRKFVCSKEGRRGVDKRDYLTKEARAETRTGCLARMVISLDRKIGKYKVIDFVAEHNHLLLPAEYVYMIRSHRHISESQASQIVLADESGLKPKDFHEFVSKQAGGINTVGYTRQDHRNLLRTKRNHSLRYGEVGALLIHFKKQSENPSFFYEFQMDVEEQITNIFWADAQMINDYGYFGDVVIFDTTFKTNKNYRPLGVFVGLNSHRQTIVYGAALLYDETIPSFQWLFETFLKAMGGKKPKTILTDQDAAMAKALSIVMPETFHGLCTWHIRENALRHVNHLYQQSSQFCSDFEACIDLHEEEEEFLSGWEALLVEHNVSKDSWLHNIFRFKEKWAWAYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLIQFFTHFERVVNGKRNNESEAEYESRQKLPRLKMKKIPMLVQAGNVYTTRIFEEFQDEYEECQASCLRNLKEGSYVVTNYDNSKERIVVANHMDKTVACDCRKFETHGILCSHALKVLDFMNVKLIPQQYILKRWPRDARLGFKLSNRASESHETYTFLSKVYEESHKIVEDMLTKKSMDGESIGMSHVSISIANEKKDQNVDTVDLGGAKAIKSRDCLDRTKKRHPTWLEKLDKKRQKRLSQTKRKKKLEQSPANNDGTHALNGRKRKKKLEQSPATHDGIHAWNGSQSGYGSHALMASQTENASRHLPLTEADNGSLHEIRIQMSNEIRI*