Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309040 | AES94535.1 | 67.399 | 273 | 45 | 4 | 6 | 278 | 1 | 229 | 2.33e-116 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0309040 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070230 | Msa0309040 | 0.932521 | 7.515548e-95 | -8.615850e-47 |
| Msa0160900 | Msa0309040 | 0.896224 | 4.528740e-76 | -8.615850e-47 |
| Msa0270480 | Msa0309040 | 0.894740 | 1.856376e-75 | -8.615850e-47 |
| Msa0309040 | Msa0747180 | 0.937787 | 1.959928e-98 | -8.615850e-47 |
| Msa0309040 | Msa0875920 | 0.902717 | 7.283224e-79 | -8.615850e-47 |
| Msa0309040 | Msa1033330 | 0.873276 | 1.666887e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309040 | MtrunA17_Chr5g0401121 | 91.781 | 146 | 12 | 0 | 6 | 151 | 1 | 146 | 2.76e-96 | 280 |
| Msa0309040 | MtrunA17_Chr3g0082121 | 72.441 | 127 | 31 | 1 | 29 | 151 | 7 | 133 | 3.78e-55 | 189 |
| Msa0309040 | MtrunA17_Chr6g0458391 | 51.685 | 89 | 43 | 0 | 54 | 142 | 218 | 306 | 7.79e-24 | 101 |
| Msa0309040 | MtrunA17_Chr6g0458391 | 37.838 | 111 | 65 | 2 | 32 | 142 | 65 | 171 | 2.17e-15 | 76.3 |
| Msa0309040 | MtrunA17_Chr1g0203721 | 53.947 | 76 | 35 | 0 | 67 | 142 | 69 | 144 | 4.27e-22 | 96.3 |
| Msa0309040 | MtrunA17_Chr4g0033611 | 45.055 | 91 | 46 | 2 | 61 | 151 | 76 | 162 | 7.67e-17 | 78.2 |
| Msa0309040 | MtrunA17_Chr2g0329421 | 43.210 | 81 | 45 | 1 | 61 | 141 | 27 | 106 | 7.80e-16 | 74.7 |
| Msa0309040 | MtrunA17_Chr7g0258861 | 43.373 | 83 | 45 | 2 | 61 | 142 | 10 | 91 | 5.50e-11 | 62.0 |
| Msa0309040 | MtrunA17_Chr2g0324011 | 43.158 | 95 | 50 | 3 | 55 | 148 | 4 | 95 | 8.18e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0309040 | AT3G59470.3 | 46.914 | 81 | 42 | 1 | 61 | 141 | 70 | 149 | 5.16e-16 | 76.3 |
| Msa0309040 | AT3G59470.1 | 46.914 | 81 | 42 | 1 | 61 | 141 | 70 | 149 | 5.16e-16 | 76.3 |
| Msa0309040 | AT3G59470.2 | 46.914 | 81 | 42 | 1 | 61 | 141 | 82 | 161 | 6.48e-16 | 76.3 |
| Msa0309040 | AT3G07500.1 | 39.506 | 81 | 49 | 0 | 61 | 141 | 33 | 113 | 6.66e-11 | 61.2 |
Find 59 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGTCAGCTTCTGTTAA+AGG | 0.115830 | 2_4:-3481434 | None:intergenic |
| TCCAACTTGGCTTGAGAAAT+TGG | 0.177029 | 2_4:+3480949 | Msa0309040:CDS |
| TCCTAATCTCATTTGACATT+TGG | 0.288109 | 2_4:-3481478 | None:intergenic |
| CTACCATTGGAGCAAGCTTC+AGG | 0.308495 | 2_4:-3480267 | None:intergenic |
| GCTTGGAATGGAAGCCAATC+TGG | 0.361798 | 2_4:+3481356 | Msa0309040:CDS |
| TATAGTAGGAAATGTGGTTT+TGG | 0.369598 | 2_4:+3480647 | Msa0309040:CDS |
| GGTGAATGATATCGTGCAAC+AGG | 0.381657 | 2_4:+3480541 | Msa0309040:CDS |
| TCACCATTCATCACCACCTC+TGG | 0.385515 | 2_4:+3480321 | Msa0309040:CDS |
| ATTTCACTTGATCGGAAGAT+TGG | 0.399360 | 2_4:+3480830 | Msa0309040:CDS |
| GACACCGCGTCTACCCTCTT+TGG | 0.402002 | 2_4:-3480738 | None:intergenic |
| TAATGTACCACACTTGGAAA+TGG | 0.424296 | 2_4:+3480583 | Msa0309040:CDS |
| TCCAAGCATGTATGCCATCA+TGG | 0.434387 | 2_4:-3481340 | None:intergenic |
| ATATGGAAGCCATGCTTTGA+TGG | 0.436030 | 2_4:+3481379 | Msa0309040:CDS |
| TACACCTTCAACCATTGGAT+TGG | 0.436578 | 2_4:-3480510 | None:intergenic |
| AATGGAAGCCAATCTGGATA+TGG | 0.437868 | 2_4:+3481362 | Msa0309040:CDS |
| ACGTGTGTCGTTTCTACCAT+TGG | 0.448381 | 2_4:-3480280 | None:intergenic |
| TCCAATTTCTCAAGCCAAGT+TGG | 0.453093 | 2_4:-3480950 | None:intergenic |
| TGTGTACCATCATTGTTTGC+AGG | 0.460822 | 2_4:-3481125 | None:intergenic |
| GGACTTTGAGTCTGAGGCCT+TGG | 0.461262 | 2_4:+3480604 | Msa0309040:CDS |
| AGAGCCGAGATTGCTTAGAT+AGG | 0.461774 | 2_4:+3480912 | Msa0309040:CDS |
| CATGGCTTCCATATCCAGAT+TGG | 0.462462 | 2_4:-3481370 | None:intergenic |
| AACAGGATGTTTAGCACGTA+TGG | 0.468473 | 2_4:+3480805 | Msa0309040:CDS |
| ATGGAAGTCTACATGAGATT+AGG | 0.477147 | 2_4:+3481453 | Msa0309040:CDS |
| TCCAAATGTCAAATGAGATT+AGG | 0.485144 | 2_4:+3481477 | Msa0309040:CDS |
| CCCATGATGGCATACATGCT+TGG | 0.488076 | 2_4:+3481339 | Msa0309040:CDS |
| GTGGACACTGTTGATCTTGG+TGG | 0.493561 | 2_4:+3480875 | Msa0309040:CDS |
| GATGGTACACATGCTTTGAA+TGG | 0.516924 | 2_4:+3481137 | Msa0309040:CDS |
| AGACCTGAAGCTTGCTCCAA+TGG | 0.521133 | 2_4:+3480264 | None:intergenic |
| CACCATTCATCACCACCTCT+GGG | 0.529997 | 2_4:+3480322 | Msa0309040:CDS |
| TAGTCCTATCTAAGCAATCT+CGG | 0.530700 | 2_4:-3480916 | None:intergenic |
| ACATCCAATCCAATGGTTGA+AGG | 0.531051 | 2_4:+3480506 | Msa0309040:CDS |
| GTATGGTTATTTCACTTGAT+CGG | 0.532614 | 2_4:+3480822 | Msa0309040:CDS |
| GCTCGAGCAGAAACTAGAAC+AGG | 0.536024 | 2_4:+3480788 | Msa0309040:CDS |
| AATGTGGACACTGTTGATCT+TGG | 0.536764 | 2_4:+3480872 | Msa0309040:CDS |
| CAATCTCCTGCAAACAATGA+TGG | 0.539918 | 2_4:+3481119 | Msa0309040:CDS |
| TGTATGCCATCATGGGTTGC+TGG | 0.540590 | 2_4:-3481332 | None:intergenic |
| ACGTGATTACTTAACAAAAG+AGG | 0.543276 | 2_4:+3480766 | Msa0309040:CDS |
| CAATCTCCAGCAACCCATGA+TGG | 0.544924 | 2_4:+3481326 | Msa0309040:CDS |
| TGCCCAGAGGTGGTGATGAA+TGG | 0.545146 | 2_4:-3480324 | None:intergenic |
| GTACACATGCTTTGAATGGA+AGG | 0.545764 | 2_4:+3481141 | Msa0309040:CDS |
| CCAAGCATGTATGCCATCAT+GGG | 0.548509 | 2_4:-3481339 | None:intergenic |
| AATGAGTATAGTAGGAAATG+TGG | 0.549866 | 2_4:+3480641 | Msa0309040:CDS |
| TGGACACTGTTGATCTTGGT+GGG | 0.560318 | 2_4:+3480876 | Msa0309040:CDS |
| TGTTAGTAATGTACCACACT+TGG | 0.560348 | 2_4:+3480577 | Msa0309040:CDS |
| ATCTTACCGGTGCCCAGAGG+TGG | 0.565589 | 2_4:-3480334 | None:intergenic |
| GGAAATGGACTTTGAGTCTG+AGG | 0.567953 | 2_4:+3480598 | Msa0309040:CDS |
| ATTATAAAATTCATATGCCA+AGG | 0.568982 | 2_4:-3480621 | None:intergenic |
| TTTGAGATGCCATCAAAGCA+TGG | 0.583887 | 2_4:-3481388 | None:intergenic |
| AAAATTTGTGTGCTCCAAAG+AGG | 0.589431 | 2_4:+3480724 | Msa0309040:CDS |
| TCATCACCACCTCTGGGCAC+CGG | 0.597509 | 2_4:+3480328 | Msa0309040:CDS |
| GATGGCATACATGCTTGGAA+TGG | 0.609086 | 2_4:+3481344 | Msa0309040:CDS |
| CCTTTAACAGAAGCTGACAA+TGG | 0.612454 | 2_4:+3481434 | Msa0309040:CDS |
| GAATATTACATCCAATCCAA+TGG | 0.614280 | 2_4:+3480499 | Msa0309040:CDS |
| AAATTTGTGTGCTCCAAAGA+GGG | 0.614397 | 2_4:+3480725 | Msa0309040:CDS |
| TCAAAGTCCATTTCCAAGTG+TGG | 0.632466 | 2_4:-3480590 | None:intergenic |
| TGCTCCAAAGAGGGTAGACG+CGG | 0.660484 | 2_4:+3480734 | Msa0309040:CDS |
| GTGAATGATATCGTGCAACA+GGG | 0.667513 | 2_4:+3480542 | Msa0309040:CDS |
| GGACACTGTTGATCTTGGTG+GGG | 0.681245 | 2_4:+3480877 | Msa0309040:CDS |
| AAAATCTTACCGGTGCCCAG+AGG | 0.742952 | 2_4:-3480337 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATAATGAGTATAGT+AGG | + | chr2_4:3480633-3480652 | Msa0309040:CDS | 15.0% |
| !!! | AATTTTATAATGAGTATAGT+AGG | + | chr2_4:3480633-3480652 | Msa0309040:CDS | 15.0% |
| !!! | CATGAATATTTGAAAGTATT+TGG | + | chr2_4:3480391-3480410 | Msa0309040:intron | 20.0% |
| !! | TATTCACATTATCTAGAAAA+TGG | - | chr2_4:3480484-3480503 | None:intergenic | 20.0% |
| !! | ATTATAAAATTCATATGCCA+AGG | - | chr2_4:3480624-3480643 | None:intergenic | 20.0% |
| !!! | CATGAATATTTGAAAGTATT+TGG | + | chr2_4:3480391-3480410 | Msa0309040:intron | 20.0% |
| !! | TATTCACATTATCTAGAAAA+TGG | - | chr2_4:3480484-3480503 | None:intergenic | 20.0% |
| !! | ATTATAAAATTCATATGCCA+AGG | - | chr2_4:3480624-3480643 | None:intergenic | 20.0% |
| !!! | TTTTATTTGCATATTCTCGA+CGG | - | chr2_4:3480676-3480695 | None:intergenic | 25.0% |
| ! | GCAAATAAAAGCAAAAAAGA+TGG | + | chr2_4:3480686-3480705 | Msa0309040:CDS | 25.0% |
| ! | GAAGATTGGAAATGAAAAAA+AGG | + | chr2_4:3480844-3480863 | Msa0309040:CDS | 25.0% |
| ! | TGGATAAAAAGAGACAAAAA+AGG | + | chr2_4:3480969-3480988 | Msa0309040:CDS | 25.0% |
| ! | GACTAAGAGAAAGAAAAAAT+TGG | + | chr2_4:3481000-3481019 | Msa0309040:CDS | 25.0% |
| !!! | TGTTACTTTTACTACTATGT+AGG | + | chr2_4:3481094-3481113 | Msa0309040:intron | 25.0% |
| ! | AAGGAAGAGAAAGAAAAAAT+TGG | + | chr2_4:3481160-3481179 | Msa0309040:CDS | 25.0% |
| ! | CACATGTTAAAAAGAAAGTA+TGG | - | chr2_4:3481035-3481054 | None:intergenic | 25.0% |
| !! | TGTTACTTCTACTATTATGT+AGG | + | chr2_4:3481301-3481320 | Msa0309040:intron | 25.0% |
| !!! | TTTTATTTGCATATTCTCGA+CGG | - | chr2_4:3480676-3480695 | None:intergenic | 25.0% |
| ! | GCAAATAAAAGCAAAAAAGA+TGG | + | chr2_4:3480686-3480705 | Msa0309040:CDS | 25.0% |
| ! | GAAGATTGGAAATGAAAAAA+AGG | + | chr2_4:3480844-3480863 | Msa0309040:CDS | 25.0% |
| ! | TGGATAAAAAGAGACAAAAA+AGG | + | chr2_4:3480969-3480988 | Msa0309040:CDS | 25.0% |
| ! | GACTAAGAGAAAGAAAAAAT+TGG | + | chr2_4:3481000-3481019 | Msa0309040:CDS | 25.0% |
| !!! | TGTTACTTTTACTACTATGT+AGG | + | chr2_4:3481094-3481113 | Msa0309040:intron | 25.0% |
| ! | AAGGAAGAGAAAGAAAAAAT+TGG | + | chr2_4:3481160-3481179 | Msa0309040:CDS | 25.0% |
| ! | CACATGTTAAAAAGAAAGTA+TGG | - | chr2_4:3481035-3481054 | None:intergenic | 25.0% |
| !! | TGTTACTTCTACTATTATGT+AGG | + | chr2_4:3481301-3481320 | Msa0309040:intron | 25.0% |
| GACAAAGAACAAAATCTTAC+CGG | - | chr2_4:3480350-3480369 | None:intergenic | 30.0% | |
| GAATATTACATCCAATCCAA+TGG | + | chr2_4:3480499-3480518 | Msa0309040:CDS | 30.0% | |
| AATGAGTATAGTAGGAAATG+TGG | + | chr2_4:3480641-3480660 | Msa0309040:CDS | 30.0% | |
| ! | TATAGTAGGAAATGTGGTTT+TGG | + | chr2_4:3480647-3480666 | Msa0309040:CDS | 30.0% |
| ACGTGATTACTTAACAAAAG+AGG | + | chr2_4:3480766-3480785 | Msa0309040:CDS | 30.0% | |
| ! | GTATGGTTATTTCACTTGAT+CGG | + | chr2_4:3480822-3480841 | Msa0309040:CDS | 30.0% |
| TGAAAAAAAGGATCAGAATG+TGG | + | chr2_4:3480856-3480875 | Msa0309040:CDS | 30.0% | |
| GCTTAGATAGGACTAAAAAA+AGG | + | chr2_4:3480924-3480943 | Msa0309040:CDS | 30.0% | |
| !! | CTAAAAAAAGGTATCCAACT+TGG | + | chr2_4:3480936-3480955 | Msa0309040:CDS | 30.0% |
| GATAGCAGTACTAAAATTCT+AGG | - | chr2_4:3481058-3481077 | None:intergenic | 30.0% | |
| TCCAAATGTCAAATGAGATT+AGG | + | chr2_4:3481477-3481496 | Msa0309040:CDS | 30.0% | |
| TCCTAATCTCATTTGACATT+TGG | - | chr2_4:3481481-3481500 | None:intergenic | 30.0% | |
| GACAAAGAACAAAATCTTAC+CGG | - | chr2_4:3480350-3480369 | None:intergenic | 30.0% | |
| GAATATTACATCCAATCCAA+TGG | + | chr2_4:3480499-3480518 | Msa0309040:CDS | 30.0% | |
| AATGAGTATAGTAGGAAATG+TGG | + | chr2_4:3480641-3480660 | Msa0309040:CDS | 30.0% | |
| ! | TATAGTAGGAAATGTGGTTT+TGG | + | chr2_4:3480647-3480666 | Msa0309040:CDS | 30.0% |
| ACGTGATTACTTAACAAAAG+AGG | + | chr2_4:3480766-3480785 | Msa0309040:CDS | 30.0% | |
| ! | GTATGGTTATTTCACTTGAT+CGG | + | chr2_4:3480822-3480841 | Msa0309040:CDS | 30.0% |
| TGAAAAAAAGGATCAGAATG+TGG | + | chr2_4:3480856-3480875 | Msa0309040:CDS | 30.0% | |
| GCTTAGATAGGACTAAAAAA+AGG | + | chr2_4:3480924-3480943 | Msa0309040:CDS | 30.0% | |
| !! | CTAAAAAAAGGTATCCAACT+TGG | + | chr2_4:3480936-3480955 | Msa0309040:CDS | 30.0% |
| GATAGCAGTACTAAAATTCT+AGG | - | chr2_4:3481058-3481077 | None:intergenic | 30.0% | |
| TCCAAATGTCAAATGAGATT+AGG | + | chr2_4:3481477-3481496 | Msa0309040:CDS | 30.0% | |
| TCCTAATCTCATTTGACATT+TGG | - | chr2_4:3481481-3481500 | None:intergenic | 30.0% | |
| ! | TTTTCTACACCTTCAACCAT+TGG | - | chr2_4:3480518-3480537 | None:intergenic | 35.0% |
| ! | GGTTGAAGGTGTAGAAAAAT+TGG | + | chr2_4:3480520-3480539 | Msa0309040:CDS | 35.0% |
| TGTTAGTAATGTACCACACT+TGG | + | chr2_4:3480577-3480596 | Msa0309040:CDS | 35.0% | |
| TAATGTACCACACTTGGAAA+TGG | + | chr2_4:3480583-3480602 | Msa0309040:CDS | 35.0% | |
| AAAATTTGTGTGCTCCAAAG+AGG | + | chr2_4:3480724-3480743 | Msa0309040:CDS | 35.0% | |
| AAATTTGTGTGCTCCAAAGA+GGG | + | chr2_4:3480725-3480744 | Msa0309040:CDS | 35.0% | |
| ATTTCACTTGATCGGAAGAT+TGG | + | chr2_4:3480830-3480849 | Msa0309040:CDS | 35.0% | |
| TAGTCCTATCTAAGCAATCT+CGG | - | chr2_4:3480919-3480938 | None:intergenic | 35.0% | |
| ATGGAAGTCTACATGAGATT+AGG | + | chr2_4:3481453-3481472 | Msa0309040:CDS | 35.0% | |
| ! | TTTTCTACACCTTCAACCAT+TGG | - | chr2_4:3480518-3480537 | None:intergenic | 35.0% |
| ! | GGTTGAAGGTGTAGAAAAAT+TGG | + | chr2_4:3480520-3480539 | Msa0309040:CDS | 35.0% |
| TGTTAGTAATGTACCACACT+TGG | + | chr2_4:3480577-3480596 | Msa0309040:CDS | 35.0% | |
| TAATGTACCACACTTGGAAA+TGG | + | chr2_4:3480583-3480602 | Msa0309040:CDS | 35.0% | |
| AAAATTTGTGTGCTCCAAAG+AGG | + | chr2_4:3480724-3480743 | Msa0309040:CDS | 35.0% | |
| AAATTTGTGTGCTCCAAAGA+GGG | + | chr2_4:3480725-3480744 | Msa0309040:CDS | 35.0% | |
| ATTTCACTTGATCGGAAGAT+TGG | + | chr2_4:3480830-3480849 | Msa0309040:CDS | 35.0% | |
| TAGTCCTATCTAAGCAATCT+CGG | - | chr2_4:3480919-3480938 | None:intergenic | 35.0% | |
| ATGGAAGTCTACATGAGATT+AGG | + | chr2_4:3481453-3481472 | Msa0309040:CDS | 35.0% | |
| ACATCCAATCCAATGGTTGA+AGG | + | chr2_4:3480506-3480525 | Msa0309040:CDS | 40.0% | |
| TACACCTTCAACCATTGGAT+TGG | - | chr2_4:3480513-3480532 | None:intergenic | 40.0% | |
| GTGAATGATATCGTGCAACA+GGG | + | chr2_4:3480542-3480561 | Msa0309040:CDS | 40.0% | |
| TCAAAGTCCATTTCCAAGTG+TGG | - | chr2_4:3480593-3480612 | None:intergenic | 40.0% | |
| AACAGGATGTTTAGCACGTA+TGG | + | chr2_4:3480805-3480824 | Msa0309040:CDS | 40.0% | |
| AATGTGGACACTGTTGATCT+TGG | + | chr2_4:3480872-3480891 | Msa0309040:CDS | 40.0% | |
| ! | TCCAACTTGGCTTGAGAAAT+TGG | + | chr2_4:3480949-3480968 | Msa0309040:CDS | 40.0% |
| TCCAATTTCTCAAGCCAAGT+TGG | - | chr2_4:3480953-3480972 | None:intergenic | 40.0% | |
| CAATCTCCTGCAAACAATGA+TGG | + | chr2_4:3481119-3481138 | Msa0309040:CDS | 40.0% | |
| TGTGTACCATCATTGTTTGC+AGG | - | chr2_4:3481128-3481147 | None:intergenic | 40.0% | |
| ! | GATGGTACACATGCTTTGAA+TGG | + | chr2_4:3481137-3481156 | Msa0309040:CDS | 40.0% |
| ! | GTACACATGCTTTGAATGGA+AGG | + | chr2_4:3481141-3481160 | Msa0309040:CDS | 40.0% |
| AATGGAAGCCAATCTGGATA+TGG | + | chr2_4:3481362-3481381 | Msa0309040:CDS | 40.0% | |
| ATATGGAAGCCATGCTTTGA+TGG | + | chr2_4:3481379-3481398 | Msa0309040:CDS | 40.0% | |
| ! | TTTGAGATGCCATCAAAGCA+TGG | - | chr2_4:3481391-3481410 | None:intergenic | 40.0% |
| CCATTGTCAGCTTCTGTTAA+AGG | - | chr2_4:3481437-3481456 | None:intergenic | 40.0% | |
| CCTTTAACAGAAGCTGACAA+TGG | + | chr2_4:3481434-3481453 | Msa0309040:CDS | 40.0% | |
| ACATCCAATCCAATGGTTGA+AGG | + | chr2_4:3480506-3480525 | Msa0309040:CDS | 40.0% | |
| TACACCTTCAACCATTGGAT+TGG | - | chr2_4:3480513-3480532 | None:intergenic | 40.0% | |
| GTGAATGATATCGTGCAACA+GGG | + | chr2_4:3480542-3480561 | Msa0309040:CDS | 40.0% | |
| TCAAAGTCCATTTCCAAGTG+TGG | - | chr2_4:3480593-3480612 | None:intergenic | 40.0% | |
| AACAGGATGTTTAGCACGTA+TGG | + | chr2_4:3480805-3480824 | Msa0309040:CDS | 40.0% | |
| AATGTGGACACTGTTGATCT+TGG | + | chr2_4:3480872-3480891 | Msa0309040:CDS | 40.0% | |
| ! | TCCAACTTGGCTTGAGAAAT+TGG | + | chr2_4:3480949-3480968 | Msa0309040:CDS | 40.0% |
| TCCAATTTCTCAAGCCAAGT+TGG | - | chr2_4:3480953-3480972 | None:intergenic | 40.0% | |
| CAATCTCCTGCAAACAATGA+TGG | + | chr2_4:3481119-3481138 | Msa0309040:CDS | 40.0% | |
| TGTGTACCATCATTGTTTGC+AGG | - | chr2_4:3481128-3481147 | None:intergenic | 40.0% | |
| ! | GATGGTACACATGCTTTGAA+TGG | + | chr2_4:3481137-3481156 | Msa0309040:CDS | 40.0% |
| ! | GTACACATGCTTTGAATGGA+AGG | + | chr2_4:3481141-3481160 | Msa0309040:CDS | 40.0% |
| AATGGAAGCCAATCTGGATA+TGG | + | chr2_4:3481362-3481381 | Msa0309040:CDS | 40.0% | |
| ATATGGAAGCCATGCTTTGA+TGG | + | chr2_4:3481379-3481398 | Msa0309040:CDS | 40.0% | |
| ! | TTTGAGATGCCATCAAAGCA+TGG | - | chr2_4:3481391-3481410 | None:intergenic | 40.0% |
| CCATTGTCAGCTTCTGTTAA+AGG | - | chr2_4:3481437-3481456 | None:intergenic | 40.0% | |
| CCTTTAACAGAAGCTGACAA+TGG | + | chr2_4:3481434-3481453 | Msa0309040:CDS | 40.0% | |
| !! | ACGTGTGTCGTTTCTACCAT+TGG | - | chr2_4:3480283-3480302 | None:intergenic | 45.0% |
| GGTGAATGATATCGTGCAAC+AGG | + | chr2_4:3480541-3480560 | Msa0309040:CDS | 45.0% | |
| ! | GGAAATGGACTTTGAGTCTG+AGG | + | chr2_4:3480598-3480617 | Msa0309040:CDS | 45.0% |
| TGGACACTGTTGATCTTGGT+GGG | + | chr2_4:3480876-3480895 | Msa0309040:CDS | 45.0% | |
| AGAGCCGAGATTGCTTAGAT+AGG | + | chr2_4:3480912-3480931 | Msa0309040:CDS | 45.0% | |
| CCAAGCATGTATGCCATCAT+GGG | - | chr2_4:3481342-3481361 | None:intergenic | 45.0% | |
| TCCAAGCATGTATGCCATCA+TGG | - | chr2_4:3481343-3481362 | None:intergenic | 45.0% | |
| GATGGCATACATGCTTGGAA+TGG | + | chr2_4:3481344-3481363 | Msa0309040:CDS | 45.0% | |
| CATGGCTTCCATATCCAGAT+TGG | - | chr2_4:3481373-3481392 | None:intergenic | 45.0% | |
| !! | ACGTGTGTCGTTTCTACCAT+TGG | - | chr2_4:3480283-3480302 | None:intergenic | 45.0% |
| GGTGAATGATATCGTGCAAC+AGG | + | chr2_4:3480541-3480560 | Msa0309040:CDS | 45.0% | |
| ! | GGAAATGGACTTTGAGTCTG+AGG | + | chr2_4:3480598-3480617 | Msa0309040:CDS | 45.0% |
| TGGACACTGTTGATCTTGGT+GGG | + | chr2_4:3480876-3480895 | Msa0309040:CDS | 45.0% | |
| AGAGCCGAGATTGCTTAGAT+AGG | + | chr2_4:3480912-3480931 | Msa0309040:CDS | 45.0% | |
| CCAAGCATGTATGCCATCAT+GGG | - | chr2_4:3481342-3481361 | None:intergenic | 45.0% | |
| TCCAAGCATGTATGCCATCA+TGG | - | chr2_4:3481343-3481362 | None:intergenic | 45.0% | |
| GATGGCATACATGCTTGGAA+TGG | + | chr2_4:3481344-3481363 | Msa0309040:CDS | 45.0% | |
| CATGGCTTCCATATCCAGAT+TGG | - | chr2_4:3481373-3481392 | None:intergenic | 45.0% | |
| TCACCATTCATCACCACCTC+TGG | + | chr2_4:3480321-3480340 | Msa0309040:CDS | 50.0% | |
| CACCATTCATCACCACCTCT+GGG | + | chr2_4:3480322-3480341 | Msa0309040:CDS | 50.0% | |
| AAAATCTTACCGGTGCCCAG+AGG | - | chr2_4:3480340-3480359 | None:intergenic | 50.0% | |
| GCTCGAGCAGAAACTAGAAC+AGG | + | chr2_4:3480788-3480807 | Msa0309040:CDS | 50.0% | |
| GTGGACACTGTTGATCTTGG+TGG | + | chr2_4:3480875-3480894 | Msa0309040:CDS | 50.0% | |
| GGACACTGTTGATCTTGGTG+GGG | + | chr2_4:3480877-3480896 | Msa0309040:CDS | 50.0% | |
| CAATCTCCAGCAACCCATGA+TGG | + | chr2_4:3481326-3481345 | Msa0309040:CDS | 50.0% | |
| ! | TGTATGCCATCATGGGTTGC+TGG | - | chr2_4:3481335-3481354 | None:intergenic | 50.0% |
| CCCATGATGGCATACATGCT+TGG | + | chr2_4:3481339-3481358 | Msa0309040:CDS | 50.0% | |
| GCTTGGAATGGAAGCCAATC+TGG | + | chr2_4:3481356-3481375 | Msa0309040:CDS | 50.0% | |
| TCACCATTCATCACCACCTC+TGG | + | chr2_4:3480321-3480340 | Msa0309040:CDS | 50.0% | |
| CACCATTCATCACCACCTCT+GGG | + | chr2_4:3480322-3480341 | Msa0309040:CDS | 50.0% | |
| AAAATCTTACCGGTGCCCAG+AGG | - | chr2_4:3480340-3480359 | None:intergenic | 50.0% | |
| GCTCGAGCAGAAACTAGAAC+AGG | + | chr2_4:3480788-3480807 | Msa0309040:CDS | 50.0% | |
| GTGGACACTGTTGATCTTGG+TGG | + | chr2_4:3480875-3480894 | Msa0309040:CDS | 50.0% | |
| GGACACTGTTGATCTTGGTG+GGG | + | chr2_4:3480877-3480896 | Msa0309040:CDS | 50.0% | |
| CAATCTCCAGCAACCCATGA+TGG | + | chr2_4:3481326-3481345 | Msa0309040:CDS | 50.0% | |
| ! | TGTATGCCATCATGGGTTGC+TGG | - | chr2_4:3481335-3481354 | None:intergenic | 50.0% |
| CCCATGATGGCATACATGCT+TGG | + | chr2_4:3481339-3481358 | Msa0309040:CDS | 50.0% | |
| GCTTGGAATGGAAGCCAATC+TGG | + | chr2_4:3481356-3481375 | Msa0309040:CDS | 50.0% | |
| ! | TGCCCAGAGGTGGTGATGAA+TGG | - | chr2_4:3480327-3480346 | None:intergenic | 55.0% |
| ! | GGACTTTGAGTCTGAGGCCT+TGG | + | chr2_4:3480604-3480623 | Msa0309040:CDS | 55.0% |
| TGCTCCAAAGAGGGTAGACG+CGG | + | chr2_4:3480734-3480753 | Msa0309040:CDS | 55.0% | |
| ! | TGCCCAGAGGTGGTGATGAA+TGG | - | chr2_4:3480327-3480346 | None:intergenic | 55.0% |
| ! | GGACTTTGAGTCTGAGGCCT+TGG | + | chr2_4:3480604-3480623 | Msa0309040:CDS | 55.0% |
| TGCTCCAAAGAGGGTAGACG+CGG | + | chr2_4:3480734-3480753 | Msa0309040:CDS | 55.0% | |
| TCATCACCACCTCTGGGCAC+CGG | + | chr2_4:3480328-3480347 | Msa0309040:CDS | 60.0% | |
| ATCTTACCGGTGCCCAGAGG+TGG | - | chr2_4:3480337-3480356 | None:intergenic | 60.0% | |
| GACACCGCGTCTACCCTCTT+TGG | - | chr2_4:3480741-3480760 | None:intergenic | 60.0% | |
| TCATCACCACCTCTGGGCAC+CGG | + | chr2_4:3480328-3480347 | Msa0309040:CDS | 60.0% | |
| ATCTTACCGGTGCCCAGAGG+TGG | - | chr2_4:3480337-3480356 | None:intergenic | 60.0% | |
| GACACCGCGTCTACCCTCTT+TGG | - | chr2_4:3480741-3480760 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 3480268 | 3481505 | 3480268 | ID=Msa0309040;Name=Msa0309040 |
| chr2_4 | mRNA | 3480268 | 3481505 | 3480268 | ID=Msa0309040-mRNA-1;Parent=Msa0309040;Name=Msa0309040-mRNA-1;_AED=0.23;_eAED=0.27;_QI=0|0|0|0.75|1|0.75|4|0|286 |
| chr2_4 | exon | 3480268 | 3480349 | 3480268 | ID=Msa0309040-mRNA-1:exon:1027;Parent=Msa0309040-mRNA-1 |
| chr2_4 | exon | 3480492 | 3481021 | 3480492 | ID=Msa0309040-mRNA-1:exon:1028;Parent=Msa0309040-mRNA-1 |
| chr2_4 | exon | 3481116 | 3481181 | 3481116 | ID=Msa0309040-mRNA-1:exon:1029;Parent=Msa0309040-mRNA-1 |
| chr2_4 | exon | 3481323 | 3481505 | 3481323 | ID=Msa0309040-mRNA-1:exon:1030;Parent=Msa0309040-mRNA-1 |
| chr2_4 | CDS | 3480268 | 3480349 | 3480268 | ID=Msa0309040-mRNA-1:cds;Parent=Msa0309040-mRNA-1 |
| chr2_4 | CDS | 3480492 | 3481021 | 3480492 | ID=Msa0309040-mRNA-1:cds;Parent=Msa0309040-mRNA-1 |
| chr2_4 | CDS | 3481116 | 3481181 | 3481116 | ID=Msa0309040-mRNA-1:cds;Parent=Msa0309040-mRNA-1 |
| chr2_4 | CDS | 3481323 | 3481505 | 3481323 | ID=Msa0309040-mRNA-1:cds;Parent=Msa0309040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
