Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0070230 | XP_024629994.1 | 72.179 | 780 | 203 | 6 | 41 | 808 | 14 | 791 | 0.0 | 1160 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0070230 | sp|Q9SZL8|FRS5_ARATH | 34.231 | 631 | 403 | 7 | 74 | 695 | 73 | 700 | 1.83e-116 | 376 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0070230 | A0A3Q7Y261 | 76.754 | 727 | 165 | 3 | 43 | 768 | 1 | 724 | 0.0 | 1150 |
Gene ID | Type | Classification |
---|---|---|
Msa0070230 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0070230 | Msa0160900 | 0.922027 | 1.676097e-88 | -8.615850e-47 |
Msa0070230 | Msa0270480 | 0.865340 | 6.338040e-65 | -8.615850e-47 |
Msa0070230 | Msa0309040 | 0.932521 | 7.515548e-95 | -8.615850e-47 |
Msa0070230 | Msa0747180 | 0.905483 | 4.092726e-80 | -8.615850e-47 |
Msa0070230 | Msa0875920 | 0.855705 | 5.274291e-62 | -8.615850e-47 |
Msa0070230 | Msa1033330 | 0.856449 | 3.193621e-62 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0070230 | MtrunA17_Chr3g0082121 | 73.888 | 697 | 170 | 2 | 40 | 732 | 5 | 693 | 0.0 | 1068 |
Msa0070230 | MtrunA17_Chr1g0164591 | 76.508 | 315 | 66 | 1 | 152 | 466 | 1 | 307 | 7.61e-178 | 516 |
Msa0070230 | MtrunA17_Chr2g0324011 | 46.620 | 577 | 299 | 5 | 74 | 644 | 10 | 583 | 2.31e-176 | 523 |
Msa0070230 | MtrunA17_Chr1g0203721 | 40.031 | 637 | 373 | 5 | 80 | 709 | 69 | 703 | 2.59e-160 | 491 |
Msa0070230 | MtrunA17_Chr6g0458391 | 42.355 | 569 | 303 | 7 | 67 | 630 | 218 | 766 | 1.47e-157 | 480 |
Msa0070230 | MtrunA17_Chr6g0458391 | 34.161 | 161 | 101 | 3 | 45 | 205 | 65 | 220 | 3.80e-20 | 96.3 |
Msa0070230 | MtrunA17_Chr5g0448761 | 34.700 | 634 | 400 | 6 | 74 | 695 | 60 | 691 | 5.95e-125 | 396 |
Msa0070230 | MtrunA17_Chr1g0202341 | 35.714 | 616 | 366 | 11 | 74 | 670 | 47 | 651 | 7.92e-115 | 366 |
Msa0070230 | MtrunA17_Chr8g0363841 | 34.173 | 556 | 347 | 8 | 86 | 629 | 29 | 577 | 4.85e-107 | 345 |
Msa0070230 | MtrunA17_Chr5g0401121 | 92.593 | 162 | 12 | 0 | 19 | 180 | 1 | 162 | 2.38e-101 | 312 |
Msa0070230 | MtrunA17_Chr2g0287651 | 31.882 | 643 | 411 | 10 | 76 | 703 | 77 | 707 | 2.05e-97 | 325 |
Msa0070230 | MtrunA17_Chr1g0207551 | 31.208 | 596 | 393 | 8 | 74 | 663 | 34 | 618 | 1.30e-96 | 321 |
Msa0070230 | MtrunA17_Chr2g0329031 | 31.211 | 644 | 409 | 15 | 74 | 708 | 14 | 632 | 1.65e-93 | 311 |
Msa0070230 | MtrunA17_Chr3g0080351 | 31.184 | 667 | 407 | 16 | 74 | 720 | 76 | 710 | 6.48e-92 | 309 |
Msa0070230 | MtrunA17_Chr7g0258861 | 49.653 | 288 | 137 | 6 | 74 | 356 | 10 | 294 | 1.42e-80 | 263 |
Msa0070230 | MtrunA17_Chr2g0296781 | 31.826 | 575 | 350 | 18 | 78 | 629 | 1 | 556 | 1.18e-79 | 273 |
Msa0070230 | MtrunA17_Chr5g0440451 | 30.180 | 666 | 406 | 16 | 58 | 691 | 26 | 664 | 4.72e-79 | 275 |
Msa0070230 | MtrunA17_Chr3g0118611 | 33.747 | 483 | 298 | 10 | 253 | 725 | 122 | 592 | 7.88e-79 | 271 |
Msa0070230 | MtrunA17_Chr1g0203051 | 28.952 | 563 | 374 | 10 | 66 | 616 | 73 | 621 | 2.73e-77 | 264 |
Msa0070230 | MtrunA17_Chr1g0198761 | 30.973 | 565 | 372 | 11 | 80 | 630 | 53 | 613 | 5.72e-76 | 263 |
Msa0070230 | MtrunA17_Chr2g0276841 | 30.228 | 569 | 381 | 10 | 68 | 626 | 64 | 626 | 2.44e-75 | 260 |
Msa0070230 | MtrunA17_Chr5g0448511 | 32.035 | 462 | 299 | 5 | 258 | 713 | 22 | 474 | 3.10e-75 | 256 |
Msa0070230 | MtrunA17_Chr5g0441581 | 29.690 | 613 | 397 | 16 | 74 | 672 | 32 | 624 | 3.09e-74 | 257 |
Msa0070230 | MtrunA17_Chr2g0287061 | 30.864 | 567 | 337 | 15 | 74 | 631 | 183 | 703 | 5.62e-72 | 253 |
Msa0070230 | MtrunA17_Chr2g0294841 | 26.508 | 713 | 467 | 15 | 66 | 743 | 37 | 727 | 1.73e-70 | 248 |
Msa0070230 | MtrunA17_Chr2g0291581 | 29.630 | 594 | 370 | 14 | 59 | 632 | 59 | 624 | 7.74e-66 | 234 |
Msa0070230 | MtrunA17_Chr6g0477261 | 33.040 | 454 | 264 | 13 | 201 | 629 | 7 | 445 | 1.18e-65 | 233 |
Msa0070230 | MtrunA17_Chr2g0290391 | 28.431 | 612 | 395 | 13 | 39 | 630 | 26 | 614 | 1.42e-64 | 230 |
Msa0070230 | MtrunA17_Chr1g0149131 | 77.679 | 112 | 25 | 0 | 353 | 464 | 1 | 112 | 3.04e-59 | 197 |
Msa0070230 | MtrunA17_Chr1g0196541 | 28.174 | 575 | 365 | 15 | 78 | 626 | 1 | 553 | 5.16e-59 | 215 |
Msa0070230 | MtrunA17_Chr5g0431001 | 30.698 | 430 | 276 | 9 | 73 | 486 | 60 | 483 | 5.25e-52 | 190 |
Msa0070230 | MtrunA17_Chr2g0291591 | 27.975 | 479 | 320 | 9 | 78 | 547 | 68 | 530 | 1.79e-50 | 187 |
Msa0070230 | MtrunA17_Chr4g0033611 | 46.296 | 108 | 52 | 3 | 74 | 179 | 76 | 179 | 1.30e-20 | 92.4 |
Msa0070230 | MtrunA17_Chr2g0329421 | 41.379 | 116 | 58 | 4 | 74 | 183 | 27 | 138 | 2.46e-19 | 87.4 |
Msa0070230 | MtrunA17_Chr7g0238821 | 44.037 | 109 | 57 | 3 | 78 | 185 | 1 | 106 | 6.69e-17 | 77.4 |
Msa0070230 | MtrunA17_Chr2g0308841 | 21.875 | 224 | 168 | 3 | 414 | 631 | 7 | 229 | 9.32e-16 | 78.6 |
Msa0070230 | MtrunA17_Chr3g0078041 | 39.048 | 105 | 62 | 2 | 74 | 177 | 50 | 153 | 9.26e-14 | 71.6 |
Msa0070230 | MtrunA17_Chr7g0233911 | 37.143 | 105 | 62 | 3 | 74 | 176 | 34 | 136 | 3.12e-13 | 70.1 |
Msa0070230 | MtrunA17_Chr2g0329361 | 34.351 | 131 | 80 | 4 | 74 | 200 | 61 | 189 | 2.78e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0070230 | AT4G38180.1 | 34.231 | 631 | 403 | 7 | 74 | 695 | 73 | 700 | 1.86e-117 | 376 |
Msa0070230 | AT4G15090.1 | 31.731 | 624 | 412 | 7 | 74 | 691 | 51 | 666 | 2.07e-101 | 335 |
Msa0070230 | AT4G15090.5 | 31.731 | 624 | 412 | 7 | 74 | 691 | 51 | 666 | 2.07e-101 | 335 |
Msa0070230 | AT4G15090.3 | 31.731 | 624 | 412 | 7 | 74 | 691 | 51 | 666 | 2.07e-101 | 335 |
Msa0070230 | AT4G15090.2 | 31.731 | 624 | 412 | 7 | 74 | 691 | 51 | 666 | 2.07e-101 | 335 |
Msa0070230 | AT4G15090.4 | 31.731 | 624 | 412 | 7 | 74 | 691 | 51 | 666 | 2.07e-101 | 335 |
Msa0070230 | AT3G22170.2 | 32.528 | 621 | 358 | 12 | 78 | 674 | 74 | 657 | 2.62e-97 | 324 |
Msa0070230 | AT3G22170.1 | 32.528 | 621 | 358 | 12 | 78 | 674 | 74 | 657 | 2.62e-97 | 324 |
Msa0070230 | AT1G76320.3 | 31.648 | 613 | 398 | 12 | 78 | 686 | 1 | 596 | 9.48e-88 | 294 |
Msa0070230 | AT1G76320.2 | 31.648 | 613 | 398 | 12 | 78 | 686 | 1 | 596 | 1.70e-87 | 295 |
Msa0070230 | AT1G76320.1 | 31.648 | 613 | 398 | 12 | 78 | 686 | 1 | 596 | 1.77e-87 | 295 |
Msa0070230 | AT1G76320.4 | 31.648 | 613 | 398 | 12 | 78 | 686 | 1 | 596 | 1.77e-87 | 295 |
Msa0070230 | AT2G27110.2 | 31.090 | 624 | 383 | 14 | 74 | 687 | 49 | 635 | 5.76e-85 | 291 |
Msa0070230 | AT2G27110.1 | 31.090 | 624 | 383 | 14 | 74 | 687 | 49 | 635 | 5.76e-85 | 291 |
Msa0070230 | AT3G06250.2 | 28.299 | 629 | 393 | 12 | 65 | 686 | 181 | 758 | 1.59e-75 | 263 |
Msa0070230 | AT3G06250.1 | 28.299 | 629 | 393 | 12 | 65 | 686 | 181 | 758 | 1.59e-75 | 263 |
Msa0070230 | AT3G06250.3 | 28.299 | 629 | 393 | 12 | 65 | 686 | 181 | 758 | 1.59e-75 | 263 |
Msa0070230 | AT5G18960.2 | 29.403 | 636 | 385 | 16 | 62 | 686 | 200 | 782 | 2.79e-74 | 259 |
Msa0070230 | AT5G18960.2 | 33.051 | 118 | 65 | 2 | 59 | 176 | 28 | 131 | 5.41e-11 | 67.0 |
Msa0070230 | AT5G18960.1 | 29.403 | 636 | 385 | 16 | 62 | 686 | 200 | 782 | 2.79e-74 | 259 |
Msa0070230 | AT5G18960.1 | 33.051 | 118 | 65 | 2 | 59 | 176 | 28 | 131 | 5.41e-11 | 67.0 |
Msa0070230 | AT2G32250.8 | 28.193 | 642 | 394 | 12 | 78 | 704 | 1 | 590 | 4.32e-74 | 259 |
Msa0070230 | AT2G32250.7 | 28.193 | 642 | 394 | 12 | 78 | 704 | 1 | 590 | 5.20e-74 | 258 |
Msa0070230 | AT2G32250.5 | 28.460 | 643 | 391 | 13 | 78 | 704 | 42 | 631 | 5.51e-74 | 258 |
Msa0070230 | AT2G32250.2 | 28.193 | 642 | 394 | 12 | 78 | 704 | 42 | 631 | 7.06e-74 | 259 |
Msa0070230 | AT2G32250.4 | 28.193 | 642 | 394 | 12 | 78 | 704 | 42 | 631 | 7.06e-74 | 259 |
Msa0070230 | AT2G32250.6 | 28.193 | 642 | 394 | 12 | 78 | 704 | 42 | 631 | 9.53e-74 | 259 |
Msa0070230 | AT2G32250.1 | 28.193 | 642 | 394 | 12 | 78 | 704 | 42 | 631 | 9.53e-74 | 259 |
Msa0070230 | AT2G32250.3 | 28.193 | 642 | 394 | 12 | 78 | 704 | 42 | 631 | 9.53e-74 | 259 |
Msa0070230 | AT1G10240.2 | 29.174 | 569 | 389 | 9 | 67 | 626 | 41 | 604 | 5.84e-73 | 254 |
Msa0070230 | AT1G10240.1 | 29.174 | 569 | 389 | 9 | 67 | 626 | 41 | 604 | 5.84e-73 | 254 |
Msa0070230 | AT2G27110.3 | 32.957 | 443 | 282 | 8 | 253 | 687 | 55 | 490 | 1.65e-72 | 253 |
Msa0070230 | AT4G19990.3 | 28.657 | 670 | 408 | 12 | 79 | 720 | 26 | 653 | 8.89e-65 | 232 |
Msa0070230 | AT4G19990.4 | 28.657 | 670 | 408 | 12 | 79 | 720 | 26 | 653 | 8.89e-65 | 232 |
Msa0070230 | AT4G19990.5 | 28.657 | 670 | 408 | 12 | 79 | 720 | 26 | 653 | 9.55e-65 | 232 |
Msa0070230 | AT4G19990.6 | 28.507 | 670 | 409 | 12 | 79 | 720 | 26 | 653 | 1.19e-64 | 232 |
Msa0070230 | AT4G19990.2 | 28.507 | 670 | 409 | 12 | 79 | 720 | 26 | 653 | 1.19e-64 | 232 |
Msa0070230 | AT4G19990.7 | 28.657 | 670 | 408 | 12 | 79 | 720 | 40 | 667 | 1.52e-64 | 232 |
Msa0070230 | AT4G38170.1 | 30.079 | 379 | 254 | 5 | 258 | 630 | 27 | 400 | 1.22e-60 | 216 |
Msa0070230 | AT1G80010.1 | 29.005 | 593 | 366 | 15 | 70 | 629 | 91 | 661 | 2.36e-59 | 216 |
Msa0070230 | AT5G28530.3 | 26.821 | 604 | 393 | 14 | 74 | 649 | 55 | 637 | 5.44e-59 | 214 |
Msa0070230 | AT5G28530.2 | 26.821 | 604 | 393 | 14 | 74 | 649 | 55 | 637 | 5.44e-59 | 214 |
Msa0070230 | AT5G28530.1 | 26.589 | 598 | 406 | 13 | 74 | 649 | 55 | 641 | 5.68e-59 | 214 |
Msa0070230 | AT1G52520.1 | 27.526 | 574 | 382 | 14 | 72 | 629 | 83 | 638 | 9.17e-58 | 211 |
Msa0070230 | AT4G19990.1 | 27.987 | 636 | 388 | 12 | 113 | 720 | 3 | 596 | 6.07e-57 | 209 |
Msa0070230 | AT5G28530.5 | 23.906 | 594 | 360 | 13 | 74 | 649 | 55 | 574 | 1.86e-40 | 159 |
Msa0070230 | AT5G28530.4 | 23.639 | 588 | 373 | 12 | 74 | 649 | 55 | 578 | 2.33e-40 | 159 |
Msa0070230 | AT3G59470.3 | 46.226 | 106 | 55 | 2 | 74 | 179 | 70 | 173 | 4.09e-21 | 94.4 |
Msa0070230 | AT3G59470.1 | 46.226 | 106 | 55 | 2 | 74 | 179 | 70 | 173 | 4.09e-21 | 94.4 |
Msa0070230 | AT3G59470.2 | 46.226 | 106 | 55 | 2 | 74 | 179 | 82 | 185 | 5.22e-21 | 94.4 |
Msa0070230 | AT3G07500.1 | 41.905 | 105 | 60 | 1 | 74 | 178 | 33 | 136 | 3.34e-15 | 76.3 |
Msa0070230 | AT2G43280.1 | 37.500 | 128 | 71 | 4 | 74 | 199 | 22 | 142 | 1.11e-13 | 71.2 |
Msa0070230 | AT4G12850.4 | 32.540 | 126 | 78 | 3 | 74 | 199 | 11 | 129 | 3.37e-12 | 65.5 |
Msa0070230 | AT2G43280.2 | 40.659 | 91 | 50 | 3 | 89 | 177 | 2 | 90 | 1.92e-11 | 63.9 |
Msa0070230 | AT4G12850.2 | 34.951 | 103 | 63 | 2 | 74 | 176 | 11 | 109 | 4.88e-11 | 62.0 |
Find 160 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCAAATAACAAACATATTT+TGG | 0.063618 | 1_2:+40223472 | Msa0070230:CDS |
CCATTGTCAGCTTCTGTTAA+AGG | 0.115830 | 1_2:-40225317 | None:intergenic |
TCCAACTTGGCTTGAGAAAT+TGG | 0.175914 | 1_2:+40224877 | Msa0070230:CDS |
CACAGACAAACAATTGTTTA+TGG | 0.199392 | 1_2:+40223612 | Msa0070230:CDS |
ATTCATCAGCCAATACAATT+TGG | 0.204201 | 1_2:-40223236 | None:intergenic |
TTGTTTGTCTGTGGCTATTA+AGG | 0.204260 | 1_2:-40223602 | None:intergenic |
GCACAAATGATAAATGATTA+TGG | 0.212778 | 1_2:+40223501 | Msa0070230:CDS |
CACAATCCATGAAATGTTTC+TGG | 0.237682 | 1_2:-40223777 | None:intergenic |
GAAATTTGCTTCGCACTAAA+AGG | 0.249768 | 1_2:+40223346 | Msa0070230:CDS |
GGTTGGGATGTAATCAAAAT+TGG | 0.250331 | 1_2:+40224531 | Msa0070230:CDS |
GATTGTGCACTTGGCATATA+AGG | 0.257928 | 1_2:+40223793 | Msa0070230:CDS |
ACAAATTCATGAAAATCTTT+TGG | 0.298226 | 1_2:-40223270 | None:intergenic |
CTACCATTGGAGCAAGCTTC+AGG | 0.308495 | 1_2:-40222546 | None:intergenic |
ATTGTATTGGCTGATGAATC+TGG | 0.322531 | 1_2:+40223240 | Msa0070230:CDS |
CATTTCATGGATTGTGCACT+TGG | 0.334162 | 1_2:+40223784 | Msa0070230:CDS |
TAGTGCGAAGCAAATTTCTA+TGG | 0.349224 | 1_2:-40223341 | None:intergenic |
GCTTGGAATGGAAGCCAATC+TGG | 0.361798 | 1_2:+40225239 | Msa0070230:CDS |
GACATTCCTCATATTCATCT+TGG | 0.362108 | 1_2:-40224277 | None:intergenic |
ACAGACAAACAATTGTTTAT+GGG | 0.367661 | 1_2:+40223613 | Msa0070230:CDS |
TATAGTAGGAAATGTGGTTT+TGG | 0.369598 | 1_2:+40222922 | Msa0070230:CDS |
CGTCCGTTGGGAGTATTTGT+TGG | 0.371935 | 1_2:+40223579 | Msa0070230:CDS |
CGCGACGGTGGCAGTGGCGG+AGG | 0.371954 | 1_2:+40225786 | Msa0070230:CDS |
TTCATCAGCCAATACAATTT+GGG | 0.375471 | 1_2:-40223235 | None:intergenic |
GAAAGGGGAACATATTGAAT+TGG | 0.379587 | 1_2:+40224553 | Msa0070230:CDS |
TCAAATAACCATTGAAAAGA+AGG | 0.380370 | 1_2:-40223663 | None:intergenic |
GGTGAATGATATCGTGCAAC+AGG | 0.381657 | 1_2:+40222816 | Msa0070230:CDS |
TCACCATTCATCACCACCTC+TGG | 0.385515 | 1_2:+40222600 | Msa0070230:CDS |
GAACGAGAAAGGGCAGATTT+AGG | 0.389727 | 1_2:+40225709 | Msa0070230:CDS |
GCCCCGCTGTTCAGCTGACT+TGG | 0.391248 | 1_2:+40220875 | Msa0070230:CDS |
CCCACCCATTGCTTTGAGAA+AGG | 0.392844 | 1_2:-40223688 | None:intergenic |
ATGAGACTCTTCATAAACTT+TGG | 0.394637 | 1_2:-40224678 | None:intergenic |
ATTTCACTTGATCGGAAGAT+TGG | 0.399360 | 1_2:+40223105 | Msa0070230:CDS |
GTCATGCCAGAAACATTTCA+TGG | 0.400517 | 1_2:+40223771 | Msa0070230:CDS |
GACACCGCGTCTACCCTCTT+TGG | 0.402002 | 1_2:-40223013 | None:intergenic |
CACAAATGATAAATGATTAT+GGG | 0.407470 | 1_2:+40223502 | Msa0070230:CDS |
TGCCAAGTCAGCTGAACAGC+GGG | 0.415382 | 1_2:-40220877 | None:intergenic |
TTAGAAAACATGAACGAGAA+AGG | 0.427796 | 1_2:+40225698 | Msa0070230:intron |
TAATGTACCACACTTGGAAA+TGG | 0.430430 | 1_2:+40222858 | Msa0070230:CDS |
TCTTGGAGTGTAAACATTGT+CGG | 0.432000 | 1_2:-40224240 | None:intergenic |
GTCAGCTGAACAGCGGGGCC+AGG | 0.432324 | 1_2:-40220871 | None:intergenic |
TCCAAGCATGTATGCCATCA+TGG | 0.434387 | 1_2:-40225223 | None:intergenic |
ATATGGAAGCCATGCTTTGA+TGG | 0.436030 | 1_2:+40225262 | Msa0070230:CDS |
TACACCTTCAACCATTGGAT+TGG | 0.436578 | 1_2:-40222785 | None:intergenic |
AATGGAAGCCAATCTGGATA+TGG | 0.437868 | 1_2:+40225245 | Msa0070230:CDS |
TAAATGATTCACATGCCTTA+AGG | 0.440417 | 1_2:-40223823 | None:intergenic |
ATCATTTATCATTTGTGCAT+CGG | 0.444064 | 1_2:-40223496 | None:intergenic |
ACGTGTGTCGTTTCTACCAT+TGG | 0.448381 | 1_2:-40222559 | None:intergenic |
TCCAATTTCTCAAGCCAAGT+TGG | 0.453093 | 1_2:-40224878 | None:intergenic |
TATGGTGTTGGCTTCTAGAA+AGG | 0.456254 | 1_2:+40225746 | Msa0070230:CDS |
GAAACCTTTCTCAAAGCAAT+GGG | 0.457265 | 1_2:+40223684 | Msa0070230:CDS |
TGTGTACCATCATTGTTTGC+AGG | 0.460822 | 1_2:-40225053 | None:intergenic |
AGAGCCGAGATTGCTTAGAT+AGG | 0.461774 | 1_2:+40224840 | Msa0070230:CDS |
CATGGCTTCCATATCCAGAT+TGG | 0.462462 | 1_2:-40225253 | None:intergenic |
AACAGGATGTTTAGCACGTA+TGG | 0.468473 | 1_2:+40223080 | Msa0070230:CDS |
TGCATCTTGATCTGTTAGAA+TGG | 0.469730 | 1_2:-40223724 | None:intergenic |
GGAGTTTGAGTCTGAGGCCT+TGG | 0.475074 | 1_2:+40222879 | Msa0070230:CDS |
TGAAACCTTTCTCAAAGCAA+TGG | 0.476564 | 1_2:+40223683 | Msa0070230:CDS |
ATGGAAGTCTACATGAGATT+AGG | 0.477147 | 1_2:+40225336 | Msa0070230:CDS |
TAGAAAACATGAACGAGAAA+GGG | 0.477194 | 1_2:+40225699 | Msa0070230:intron |
ATAAATGATTATGGGTACTT+TGG | 0.482723 | 1_2:+40223510 | Msa0070230:CDS |
GGAATTCCAAGATGAATATG+AGG | 0.483458 | 1_2:+40224271 | Msa0070230:CDS |
AATAAGAATTATCGTCCGTT+GGG | 0.484650 | 1_2:+40223567 | Msa0070230:CDS |
AAGAGGCGCGACGGTGGCAG+TGG | 0.486772 | 1_2:+40225780 | Msa0070230:CDS |
CCCATGATGGCATACATGCT+TGG | 0.488076 | 1_2:+40225222 | Msa0070230:CDS |
GTGGACACTGTTGATCTTGG+TGG | 0.493561 | 1_2:+40224803 | Msa0070230:CDS |
AGGCGCGACGGTGGCAGTGG+CGG | 0.494164 | 1_2:+40225783 | Msa0070230:CDS |
TTTGCTTTGAGATGCGGCGA+CGG | 0.494801 | 1_2:+40225811 | Msa0070230:CDS |
CAAATAACCATTGAAAAGAA+GGG | 0.495588 | 1_2:-40223662 | None:intergenic |
ACAAGCATCCCAAATTGTAT+TGG | 0.495869 | 1_2:+40223227 | Msa0070230:CDS |
GATGTAATCAAAATTGGAAA+GGG | 0.496181 | 1_2:+40224537 | Msa0070230:CDS |
TCACTAAGGTATGGTGAAGT+AGG | 0.507546 | 1_2:+40223375 | Msa0070230:CDS |
GCGACGGTGGCAGTGGCGGA+GGG | 0.509515 | 1_2:+40225787 | Msa0070230:CDS |
TCTATGGATGGAGAGTCAAT+TGG | 0.511024 | 1_2:+40224731 | Msa0070230:CDS |
GATGGTACACATGCTTTGAA+TGG | 0.516924 | 1_2:+40225065 | Msa0070230:CDS |
TTGTCGGCTTGTACAAGCAT+AGG | 0.519591 | 1_2:-40224224 | None:intergenic |
AGACCTGAAGCTTGCTCCAA+TGG | 0.521133 | 1_2:+40222543 | Msa0070230:intron |
ATTGTGCACTTGGCATATAA+GGG | 0.522000 | 1_2:+40223794 | Msa0070230:CDS |
ATCATATAAACATACTCAGC+TGG | 0.522562 | 1_2:-40223177 | None:intergenic |
GATAGTAGTAGCGAATCATA+TGG | 0.523742 | 1_2:+40224370 | Msa0070230:CDS |
TTGGACAAGAGATGCAAGGT+TGG | 0.524873 | 1_2:+40224514 | Msa0070230:CDS |
CATACTCAGCTGGCAGAAGA+AGG | 0.525063 | 1_2:-40223167 | None:intergenic |
GAGGGCTTTGCTTTGAGATG+CGG | 0.525523 | 1_2:+40225805 | Msa0070230:CDS |
AAATAAGAATTATCGTCCGT+TGG | 0.526037 | 1_2:+40223566 | Msa0070230:CDS |
TGAAACTCATAAAAGAATGA+AGG | 0.528219 | 1_2:-40223435 | None:intergenic |
ATGGTGTTGGCTTCTAGAAA+GGG | 0.528676 | 1_2:+40225747 | Msa0070230:CDS |
GCTTTGAGATGCGGCGACGG+CGG | 0.528736 | 1_2:+40225814 | Msa0070230:CDS |
CACCATTCATCACCACCTCT+GGG | 0.529997 | 1_2:+40222601 | Msa0070230:CDS |
TGGACAAGAGATGCAAGGTT+GGG | 0.530700 | 1_2:+40224515 | Msa0070230:CDS |
TAGTCCTATCTAAGCAATCT+CGG | 0.530700 | 1_2:-40224844 | None:intergenic |
ACATCCAATCCAATGGTTGA+AGG | 0.531051 | 1_2:+40222781 | Msa0070230:CDS |
AATGAATATAGTAGGAAATG+TGG | 0.531225 | 1_2:+40222916 | Msa0070230:CDS |
GTATGGTTATTTCACTTGAT+CGG | 0.532614 | 1_2:+40223097 | Msa0070230:CDS |
TGCGGCGACGGCGGAAGTGA+CGG | 0.535449 | 1_2:+40225823 | Msa0070230:CDS |
GCTCGAGCAGAAACTAGAAC+AGG | 0.536024 | 1_2:+40223063 | Msa0070230:CDS |
AAATCTCCTGCAAACAATGA+TGG | 0.536617 | 1_2:+40225047 | Msa0070230:CDS |
AATGTGGACACTGTTGATCT+TGG | 0.536764 | 1_2:+40224800 | Msa0070230:CDS |
ATTATAAAATTCATATGCCA+AGG | 0.537166 | 1_2:-40222896 | None:intergenic |
TGTATGCCATCATGGGTTGC+TGG | 0.540590 | 1_2:-40225215 | None:intergenic |
TCAAGATGCAGCAATGGCTA+AGG | 0.541612 | 1_2:+40223737 | Msa0070230:CDS |
ACGTGATTACTTAACAAAAG+AGG | 0.543276 | 1_2:+40223041 | Msa0070230:CDS |
CTAAAAGGAACCACTCACTA+AGG | 0.543419 | 1_2:+40223361 | Msa0070230:CDS |
CAATCTCCAGCAACCCATGA+TGG | 0.544924 | 1_2:+40225209 | Msa0070230:CDS |
TGCCCAGAGGTGGTGATGAA+TGG | 0.545146 | 1_2:-40222603 | None:intergenic |
GTACACATGCTTTGAATGGA+AGG | 0.545764 | 1_2:+40225069 | Msa0070230:CDS |
CAGACAAACAATTGTTTATG+GGG | 0.545894 | 1_2:+40223614 | Msa0070230:CDS |
AGCAATATATACTAAAACGT+TGG | 0.545983 | 1_2:+40224495 | Msa0070230:CDS |
ATAATGTTTCTAAAGACTCA+TGG | 0.548211 | 1_2:+40223949 | Msa0070230:CDS |
CCAAGCATGTATGCCATCAT+GGG | 0.548509 | 1_2:-40225222 | None:intergenic |
GGAAATGGAGTTTGAGTCTG+AGG | 0.549669 | 1_2:+40222873 | Msa0070230:CDS |
ACCTTTCTCAAAGCAATGGG+TGG | 0.552305 | 1_2:+40223687 | Msa0070230:CDS |
GGATGTAATCAAAATTGGAA+AGG | 0.552421 | 1_2:+40224536 | Msa0070230:CDS |
TCGGAAGATTGGAAAATACA+AGG | 0.556421 | 1_2:+40223116 | Msa0070230:CDS |
TCTTAGTAATGTACCACACT+TGG | 0.558175 | 1_2:+40222852 | Msa0070230:CDS |
TGGACACTGTTGATCTTGGT+GGG | 0.560318 | 1_2:+40224804 | Msa0070230:CDS |
GCTGTTCAGCTGACTTGGCA+TGG | 0.563167 | 1_2:+40220880 | Msa0070230:CDS |
TTGCTCAATTTAACTGCTCG+AGG | 0.564353 | 1_2:-40224617 | None:intergenic |
TAGGTCGTCACAGTAACATA+TGG | 0.564923 | 1_2:+40225728 | Msa0070230:CDS |
ATCTTACCGGTGCCCAGAGG+TGG | 0.565589 | 1_2:-40222613 | None:intergenic |
ATATAAGGGAAAATGCCTTA+AGG | 0.566279 | 1_2:+40223808 | Msa0070230:CDS |
AACAGATCAAGATGCAGCAA+TGG | 0.573110 | 1_2:+40223731 | Msa0070230:CDS |
ATTCTTATTTGTCTTGAATG+TGG | 0.574010 | 1_2:-40223553 | None:intergenic |
AGGAACCACTCACTAAGGTA+TGG | 0.576328 | 1_2:+40223366 | Msa0070230:CDS |
GTGCGAAAGACTTTCACTGC+AGG | 0.578283 | 1_2:+40224017 | Msa0070230:CDS |
TGTCGAAAGTTTGAGACACA+TGG | 0.578537 | 1_2:+40224413 | Msa0070230:CDS |
TTTGAGATGCCATCAAAGCA+TGG | 0.583887 | 1_2:-40225271 | None:intergenic |
CATAAACAATTGTTTGTCTG+TGG | 0.584673 | 1_2:-40223611 | None:intergenic |
TGTCGGCTTGTACAAGCATA+GGG | 0.586633 | 1_2:-40224223 | None:intergenic |
AAAGAGTTGTCAACGGAAAG+CGG | 0.589356 | 1_2:+40224135 | Msa0070230:CDS |
AAAATTTGTGTGCTCCAAAG+AGG | 0.589431 | 1_2:+40222999 | Msa0070230:CDS |
TCATCACCACCTCTGGGCAC+CGG | 0.597509 | 1_2:+40222607 | Msa0070230:CDS |
TGTTGGCTTCTAGAAAGGGT+AGG | 0.602571 | 1_2:+40225751 | Msa0070230:CDS |
GATGGCATACATGCTTGGAA+TGG | 0.609086 | 1_2:+40225227 | Msa0070230:CDS |
CACTTTGAAAGAGTTGTCAA+CGG | 0.610932 | 1_2:+40224128 | Msa0070230:CDS |
CCTTTAACAGAAGCTGACAA+TGG | 0.612454 | 1_2:+40225317 | Msa0070230:CDS |
CCTTTCTCAAAGCAATGGGT+GGG | 0.612770 | 1_2:+40223688 | Msa0070230:CDS |
GTCACAGTAACATATGGTGT+TGG | 0.612986 | 1_2:+40225734 | Msa0070230:CDS |
ATGTAATCAAAATTGGAAAG+GGG | 0.613707 | 1_2:+40224538 | Msa0070230:CDS |
ATGCATTGATCTACACGAAG+AGG | 0.614015 | 1_2:+40223884 | Msa0070230:CDS |
GAATATTACATCCAATCCAA+TGG | 0.614280 | 1_2:+40222774 | Msa0070230:CDS |
AAATTTGTGTGCTCCAAAGA+GGG | 0.614397 | 1_2:+40223000 | Msa0070230:CDS |
GAATTTGTGTCAAAACAAGC+TGG | 0.617409 | 1_2:+40223285 | Msa0070230:CDS |
CAAGGTTATTGACTTTGTAG+CGG | 0.620198 | 1_2:+40223134 | Msa0070230:CDS |
CTTCACCATACCTTAGTGAG+TGG | 0.628280 | 1_2:-40223371 | None:intergenic |
AACGTTGGACAAGAGATGCA+AGG | 0.629157 | 1_2:+40224510 | Msa0070230:CDS |
AGGTTTGCAAAGAGGCGCGA+CGG | 0.630884 | 1_2:+40225771 | Msa0070230:CDS |
TACAAATTATGATAACAGCA+AGG | 0.637062 | 1_2:+40224343 | Msa0070230:CDS |
GAAAGGGTAGGTTTGCAAAG+AGG | 0.637487 | 1_2:+40225763 | Msa0070230:CDS |
GCTGGTGGAATAAACACTGT+TGG | 0.638577 | 1_2:+40223303 | Msa0070230:CDS |
TTTGCAAAGAGGCGCGACGG+TGG | 0.639189 | 1_2:+40225774 | Msa0070230:CDS |
TCAAACTCCATTTCCAAGTG+TGG | 0.642402 | 1_2:-40222865 | None:intergenic |
TTTGTGTCAAAACAAGCTGG+TGG | 0.647892 | 1_2:+40223288 | Msa0070230:CDS |
AGGCCAACAAATACTCCCAA+CGG | 0.650363 | 1_2:-40223582 | None:intergenic |
TGCTCCAAAGAGGGTAGACG+CGG | 0.660484 | 1_2:+40223009 | Msa0070230:CDS |
GTGAATGATATCGTGCAACA+GGG | 0.667513 | 1_2:+40222817 | Msa0070230:CDS |
ATGCCAAGTCAGCTGAACAG+CGG | 0.668455 | 1_2:-40220878 | None:intergenic |
GGCGACGGCGGAAGTGACGG+AGG | 0.681192 | 1_2:+40225826 | Msa0070230:CDS |
GGACACTGTTGATCTTGGTG+GGG | 0.681245 | 1_2:+40224805 | Msa0070230:CDS |
ATTATGATAACAGCAAGGAG+CGG | 0.694152 | 1_2:+40224348 | Msa0070230:CDS |
GCCAAGTCAGCTGAACAGCG+GGG | 0.718283 | 1_2:-40220876 | None:intergenic |
AAAATCTTACCGGTGCCCAG+AGG | 0.742952 | 1_2:-40222616 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATATATATATTTTTTTTTA+AGG | - | chr1_2:40221945-40221964 | None:intergenic | 0.0% |
!!! | ATTTTTATTTTTTAATTACG+TGG | - | chr1_2:40220967-40220986 | None:intergenic | 10.0% |
!!! | TATAATTTTCAGATATTTTT+CGG | - | chr1_2:40221171-40221190 | None:intergenic | 10.0% |
!! | CTGAAAATTATAAAAAATTT+CGG | + | chr1_2:40221179-40221198 | Msa0070230:intron | 10.0% |
!!! | TTATTTTCAGAAAATATAAT+TGG | - | chr1_2:40221280-40221299 | None:intergenic | 10.0% |
!!! | AAATTTATTTTCAGATTTTT+CGG | + | chr1_2:40221488-40221507 | Msa0070230:intron | 10.0% |
!!! | AAATTTATTTTCAGATTTTT+CGG | + | chr1_2:40221488-40221507 | Msa0070230:intron | 10.0% |
!!! | AAATTTATTTTCAGATTTTT+CGG | + | chr1_2:40221488-40221507 | Msa0070230:intron | 10.0% |
!!! | AAAAAAAATTTGTTTGAAAA+TGG | - | chr1_2:40221838-40221857 | None:intergenic | 10.0% |
!!! | AATTTTATAATGAATATAGT+AGG | + | chr1_2:40222908-40222927 | Msa0070230:CDS | 10.0% |
!!! | AAATTTCTTTTCAGATTTTT+CGG | - | chr1_2:40221089-40221108 | None:intergenic | 15.0% |
!!! | TTACAATTTTCAGATTTTTT+TGG | + | chr1_2:40221620-40221639 | Msa0070230:intron | 15.0% |
!!! | TCAAACAAATTTTTTTTTAC+AGG | + | chr1_2:40221841-40221860 | Msa0070230:intron | 15.0% |
!!! | CAAACAAATTTTTTTTTACA+GGG | + | chr1_2:40221842-40221861 | Msa0070230:intron | 15.0% |
!!! | AATTCAAACTTTTTTTTTAC+AGG | + | chr1_2:40221869-40221888 | Msa0070230:intron | 15.0% |
!!! | ATTCAAACTTTTTTTTTACA+GGG | + | chr1_2:40221870-40221889 | Msa0070230:intron | 15.0% |
!!! | TATGCTTTTTTTTTATGATA+TGG | - | chr1_2:40222080-40222099 | None:intergenic | 15.0% |
!! | TGTTTAAAAAATTTGAAAGA+AGG | + | chr1_2:40224308-40224327 | Msa0070230:CDS | 15.0% |
!! | GTTTAAAAAATTTGAAAGAA+GGG | + | chr1_2:40224309-40224328 | Msa0070230:CDS | 15.0% |
!! | AACAGTGAATTTAGAAATAT+AGG | + | chr1_2:40222125-40222144 | Msa0070230:intron | 20.0% |
!!! | CATGAATATTTGAAAGTATT+TGG | + | chr1_2:40222670-40222689 | Msa0070230:intron | 20.0% |
!! | TATTCACATTATCTAGAAAA+TGG | - | chr1_2:40222759-40222778 | None:intergenic | 20.0% |
!! | ATTATAAAATTCATATGCCA+AGG | - | chr1_2:40222899-40222918 | None:intergenic | 20.0% |
!!! | ACAAATTCATGAAAATCTTT+TGG | - | chr1_2:40223273-40223292 | None:intergenic | 20.0% |
!!! | AGCAAATAACAAACATATTT+TGG | + | chr1_2:40223472-40223491 | Msa0070230:CDS | 20.0% |
!!! | GCAAATAACAAACATATTTT+GGG | + | chr1_2:40223473-40223492 | Msa0070230:CDS | 20.0% |
!! | CACAAATGATAAATGATTAT+GGG | + | chr1_2:40223502-40223521 | Msa0070230:CDS | 20.0% |
!!! | ATCTTTTTCATTTTCAATCT+TGG | - | chr1_2:40224203-40224222 | None:intergenic | 20.0% |
!! | ATCAATTGCAAATGAAAAAA+AGG | + | chr1_2:40224772-40224791 | Msa0070230:CDS | 20.0% |
!!! | ACATTACTACTTTTTCTATT+AGG | + | chr1_2:40225417-40225436 | Msa0070230:intron | 20.0% |
!!! | CATTACTACTTTTTCTATTA+GGG | + | chr1_2:40225418-40225437 | Msa0070230:intron | 20.0% |
!!! | ATTACTACTTTTTCTATTAG+GGG | + | chr1_2:40225419-40225438 | Msa0070230:intron | 20.0% |
!!! | CACTTTGTATTTTATTTTAC+TGG | - | chr1_2:40225574-40225593 | None:intergenic | 20.0% |
!! | AATTGTTCATATCAATTTAG+AGG | - | chr1_2:40225601-40225620 | None:intergenic | 20.0% |
! | AAAATGTCTTGGATCAAATT+TGG | - | chr1_2:40221986-40222005 | None:intergenic | 25.0% |
!!! | ATCCAAGACATTTTTTAAGT+GGG | + | chr1_2:40221992-40222011 | Msa0070230:intron | 25.0% |
! | AGGAATTAGAATCACAAATA+AGG | + | chr1_2:40222145-40222164 | Msa0070230:intron | 25.0% |
! | GGAATTAGAATCACAAATAA+GGG | + | chr1_2:40222146-40222165 | Msa0070230:intron | 25.0% |
! | GAATTAGAATCACAAATAAG+GGG | + | chr1_2:40222147-40222166 | Msa0070230:intron | 25.0% |
! | GATCTCAATTTCTTAAGAAA+TGG | - | chr1_2:40222185-40222204 | None:intergenic | 25.0% |
! | AGAAGAGAATATGAAGAAAA+CGG | + | chr1_2:40222312-40222331 | Msa0070230:intron | 25.0% |
! | AATGAATATAGTAGGAAATG+TGG | + | chr1_2:40222916-40222935 | Msa0070230:CDS | 25.0% |
!!! | TTTTATTTGCATATTCTCGA+CGG | - | chr1_2:40222951-40222970 | None:intergenic | 25.0% |
! | GCAAATAAAAGCAAAAAAGA+TGG | + | chr1_2:40222961-40222980 | Msa0070230:CDS | 25.0% |
! | TGAAACTCATAAAAGAATGA+AGG | - | chr1_2:40223438-40223457 | None:intergenic | 25.0% |
!! | ATTCTTTTATGAGTTTCAGA+TGG | + | chr1_2:40223440-40223459 | Msa0070230:CDS | 25.0% |
! | ATCATTTATCATTTGTGCAT+CGG | - | chr1_2:40223499-40223518 | None:intergenic | 25.0% |
! | GCACAAATGATAAATGATTA+TGG | + | chr1_2:40223501-40223520 | Msa0070230:CDS | 25.0% |
! | ATAAATGATTATGGGTACTT+TGG | + | chr1_2:40223510-40223529 | Msa0070230:CDS | 25.0% |
!! | ATTCTTATTTGTCTTGAATG+TGG | - | chr1_2:40223556-40223575 | None:intergenic | 25.0% |
! | ACAGACAAACAATTGTTTAT+GGG | + | chr1_2:40223613-40223632 | Msa0070230:CDS | 25.0% |
! | CAAATAACCATTGAAAAGAA+GGG | - | chr1_2:40223665-40223684 | None:intergenic | 25.0% |
! | TCAAATAACCATTGAAAAGA+AGG | - | chr1_2:40223666-40223685 | None:intergenic | 25.0% |
!! | ATAATGTTTCTAAAGACTCA+TGG | + | chr1_2:40223949-40223968 | Msa0070230:CDS | 25.0% |
! | CCTTGAATCGAAAAATATTA+TGG | - | chr1_2:40223977-40223996 | None:intergenic | 25.0% |
!!! | CCATAATATTTTTCGATTCA+AGG | + | chr1_2:40223974-40223993 | Msa0070230:CDS | 25.0% |
!!! | TTTTTCGATTCAAGGAAAAA+TGG | + | chr1_2:40223982-40224001 | Msa0070230:CDS | 25.0% |
!! | TTTTCGATTCAAGGAAAAAT+GGG | + | chr1_2:40223983-40224002 | Msa0070230:CDS | 25.0% |
! | TACAAATTATGATAACAGCA+AGG | + | chr1_2:40224343-40224362 | Msa0070230:CDS | 25.0% |
! | AGCAATATATACTAAAACGT+TGG | + | chr1_2:40224495-40224514 | Msa0070230:CDS | 25.0% |
! | GATGTAATCAAAATTGGAAA+GGG | + | chr1_2:40224537-40224556 | Msa0070230:CDS | 25.0% |
! | ATGTAATCAAAATTGGAAAG+GGG | + | chr1_2:40224538-40224557 | Msa0070230:CDS | 25.0% |
! | TGGATAAAAAGAGACAAAAA+AGG | + | chr1_2:40224897-40224916 | Msa0070230:CDS | 25.0% |
! | GACTAAGAGAAAGAAAAAAT+TGG | + | chr1_2:40224928-40224947 | Msa0070230:CDS | 25.0% |
!!! | TGTTACTTTTACTACTATGT+AGG | + | chr1_2:40225022-40225041 | Msa0070230:intron | 25.0% |
! | AAGGAAGAGAAAGAAAAAAT+TGG | + | chr1_2:40225088-40225107 | Msa0070230:CDS | 25.0% |
! | CACATGTTAAAAAGAAAGTA+TGG | - | chr1_2:40224963-40224982 | None:intergenic | 25.0% |
!! | TGTTACTTCTACTATTATGT+AGG | + | chr1_2:40225184-40225203 | Msa0070230:intron | 25.0% |
! | TGATCAACAAAATGCAATAT+AGG | - | chr1_2:40225446-40225465 | None:intergenic | 25.0% |
!!! | CATTTTGTTGATCACTTTTT+GGG | + | chr1_2:40225452-40225471 | Msa0070230:intron | 25.0% |
TCAAAACACGTCTATATTAC+AGG | + | chr1_2:40221900-40221919 | Msa0070230:intron | 30.0% | |
CAAAACACGTCTATATTACA+GGG | + | chr1_2:40221901-40221920 | Msa0070230:intron | 30.0% | |
!!! | GATCCAAGACATTTTTTAAG+TGG | + | chr1_2:40221991-40222010 | Msa0070230:intron | 30.0% |
AACCCACTTAAAAAATGTCT+TGG | - | chr1_2:40221997-40222016 | None:intergenic | 30.0% | |
CAATTTCTTAAGAAATGGAG+AGG | - | chr1_2:40222180-40222199 | None:intergenic | 30.0% | |
TTAAAATGAATCTCAGCCAT+TGG | - | chr1_2:40222253-40222272 | None:intergenic | 30.0% | |
AAAGTGAAACCAAATGATGA+TGG | - | chr1_2:40222434-40222453 | None:intergenic | 30.0% | |
GACAAAGAACAAAATCTTAC+CGG | - | chr1_2:40222629-40222648 | None:intergenic | 30.0% | |
GAATATTACATCCAATCCAA+TGG | + | chr1_2:40222774-40222793 | Msa0070230:CDS | 30.0% | |
! | TATAGTAGGAAATGTGGTTT+TGG | + | chr1_2:40222922-40222941 | Msa0070230:CDS | 30.0% |
ACGTGATTACTTAACAAAAG+AGG | + | chr1_2:40223041-40223060 | Msa0070230:CDS | 30.0% | |
! | GTATGGTTATTTCACTTGAT+CGG | + | chr1_2:40223097-40223116 | Msa0070230:CDS | 30.0% |
ATCATATAAACATACTCAGC+TGG | - | chr1_2:40223180-40223199 | None:intergenic | 30.0% | |
TTCATCAGCCAATACAATTT+GGG | - | chr1_2:40223238-40223257 | None:intergenic | 30.0% | |
ATTCATCAGCCAATACAATT+TGG | - | chr1_2:40223239-40223258 | None:intergenic | 30.0% | |
AAATAAGAATTATCGTCCGT+TGG | + | chr1_2:40223566-40223585 | Msa0070230:CDS | 30.0% | |
AATAAGAATTATCGTCCGTT+GGG | + | chr1_2:40223567-40223586 | Msa0070230:CDS | 30.0% | |
CATAAACAATTGTTTGTCTG+TGG | - | chr1_2:40223614-40223633 | None:intergenic | 30.0% | |
CACAGACAAACAATTGTTTA+TGG | + | chr1_2:40223612-40223631 | Msa0070230:CDS | 30.0% | |
CAGACAAACAATTGTTTATG+GGG | + | chr1_2:40223614-40223633 | Msa0070230:CDS | 30.0% | |
! | AAACAATCCCTTCTTTTCAA+TGG | + | chr1_2:40223655-40223674 | Msa0070230:CDS | 30.0% |
! | TGATCTGTTAGAATGGTTTT+AGG | - | chr1_2:40223720-40223739 | None:intergenic | 30.0% |
ATATAAGGGAAAATGCCTTA+AGG | + | chr1_2:40223808-40223827 | Msa0070230:CDS | 30.0% | |
TAAATGATTCACATGCCTTA+AGG | - | chr1_2:40223826-40223845 | None:intergenic | 30.0% | |
!!! | AAGAAGAATTTTTGAGTGGA+TGG | + | chr1_2:40223907-40223926 | Msa0070230:CDS | 30.0% |
!!! | AGAAGAATTTTTGAGTGGAT+GGG | + | chr1_2:40223908-40223927 | Msa0070230:CDS | 30.0% |
! | TTACACTCCAAGAATTTTTG+AGG | + | chr1_2:40224250-40224269 | Msa0070230:CDS | 30.0% |
TGGAATTCCTCAAAAATTCT+TGG | - | chr1_2:40224260-40224279 | None:intergenic | 30.0% | |
!! | CGTTTTAGTATATATTGCTG+AGG | - | chr1_2:40224494-40224513 | None:intergenic | 30.0% |
GGATGTAATCAAAATTGGAA+AGG | + | chr1_2:40224536-40224555 | Msa0070230:CDS | 30.0% | |
ATGAGACTCTTCATAAACTT+TGG | - | chr1_2:40224681-40224700 | None:intergenic | 30.0% | |
! | TATGCTGACTAAAAAGTCTA+TGG | + | chr1_2:40224715-40224734 | Msa0070230:CDS | 30.0% |
TGAAAAAAAGGATCAGAATG+TGG | + | chr1_2:40224784-40224803 | Msa0070230:CDS | 30.0% | |
GCTTAGATAGGACTAAAAAA+AGG | + | chr1_2:40224852-40224871 | Msa0070230:CDS | 30.0% | |
GATAGCAGTACTAAAATTCT+AGG | - | chr1_2:40224986-40225005 | None:intergenic | 30.0% | |
TCCAAATGTCAAATGAGATT+AGG | + | chr1_2:40225360-40225379 | Msa0070230:intron | 30.0% | |
TCCTAATCTCATTTGACATT+TGG | - | chr1_2:40225364-40225383 | None:intergenic | 30.0% | |
AGATTAGGATCTAACACAAT+TGG | + | chr1_2:40225375-40225394 | Msa0070230:intron | 30.0% | |
GATTAGGATCTAACACAATT+GGG | + | chr1_2:40225376-40225395 | Msa0070230:intron | 30.0% | |
!! | GCATTTTGTTGATCACTTTT+TGG | + | chr1_2:40225451-40225470 | Msa0070230:intron | 30.0% |
TCATAATTTGAGCAAGACTT+TGG | - | chr1_2:40225516-40225535 | None:intergenic | 30.0% | |
ACAATTGAACATGTATGCAA+AGG | + | chr1_2:40225615-40225634 | Msa0070230:intron | 30.0% | |
ATTGAAGAATTAGAATGCCA+AGG | + | chr1_2:40225649-40225668 | Msa0070230:intron | 30.0% | |
TTGAAGAATTAGAATGCCAA+GGG | + | chr1_2:40225650-40225669 | Msa0070230:intron | 30.0% | |
AAAAGACAACAAAGACATGA+AGG | - | chr1_2:40225680-40225699 | None:intergenic | 30.0% | |
TTAGAAAACATGAACGAGAA+AGG | + | chr1_2:40225698-40225717 | Msa0070230:intron | 30.0% | |
TAGAAAACATGAACGAGAAA+GGG | + | chr1_2:40225699-40225718 | Msa0070230:intron | 30.0% | |
ATTTGTTTGAAAATGGTCCC+TGG | - | chr1_2:40221831-40221850 | None:intergenic | 35.0% | |
!! | AACTAAGTTGATGACATGGA+AGG | - | chr1_2:40222036-40222055 | None:intergenic | 35.0% |
TATGGTCTGAACCAATACTA+TGG | + | chr1_2:40222372-40222391 | Msa0070230:intron | 35.0% | |
TGTGACTTACCATCATCATT+TGG | + | chr1_2:40222422-40222441 | Msa0070230:intron | 35.0% | |
! | TTTTCTACACCTTCAACCAT+TGG | - | chr1_2:40222793-40222812 | None:intergenic | 35.0% |
! | GGTTGAAGGTGTAGAAAAAT+TGG | + | chr1_2:40222795-40222814 | Msa0070230:CDS | 35.0% |
TCTTAGTAATGTACCACACT+TGG | + | chr1_2:40222852-40222871 | Msa0070230:CDS | 35.0% | |
TAATGTACCACACTTGGAAA+TGG | + | chr1_2:40222858-40222877 | Msa0070230:CDS | 35.0% | |
AAAATTTGTGTGCTCCAAAG+AGG | + | chr1_2:40222999-40223018 | Msa0070230:CDS | 35.0% | |
AAATTTGTGTGCTCCAAAGA+GGG | + | chr1_2:40223000-40223019 | Msa0070230:CDS | 35.0% | |
ATTTCACTTGATCGGAAGAT+TGG | + | chr1_2:40223105-40223124 | Msa0070230:CDS | 35.0% | |
TCGGAAGATTGGAAAATACA+AGG | + | chr1_2:40223116-40223135 | Msa0070230:CDS | 35.0% | |
!! | CAAGGTTATTGACTTTGTAG+CGG | + | chr1_2:40223134-40223153 | Msa0070230:CDS | 35.0% |
ACAAGCATCCCAAATTGTAT+TGG | + | chr1_2:40223227-40223246 | Msa0070230:CDS | 35.0% | |
!! | ATTGTATTGGCTGATGAATC+TGG | + | chr1_2:40223240-40223259 | Msa0070230:CDS | 35.0% |
GAATTTGTGTCAAAACAAGC+TGG | + | chr1_2:40223285-40223304 | Msa0070230:CDS | 35.0% | |
TAGTGCGAAGCAAATTTCTA+TGG | - | chr1_2:40223344-40223363 | None:intergenic | 35.0% | |
! | GAAATTTGCTTCGCACTAAA+AGG | + | chr1_2:40223346-40223365 | Msa0070230:CDS | 35.0% |
TTGTTTGTCTGTGGCTATTA+AGG | - | chr1_2:40223605-40223624 | None:intergenic | 35.0% | |
TGAAACCTTTCTCAAAGCAA+TGG | + | chr1_2:40223683-40223702 | Msa0070230:CDS | 35.0% | |
GAAACCTTTCTCAAAGCAAT+GGG | + | chr1_2:40223684-40223703 | Msa0070230:CDS | 35.0% | |
TGCATCTTGATCTGTTAGAA+TGG | - | chr1_2:40223727-40223746 | None:intergenic | 35.0% | |
CACAATCCATGAAATGTTTC+TGG | - | chr1_2:40223780-40223799 | None:intergenic | 35.0% | |
ATTGTGCACTTGGCATATAA+GGG | + | chr1_2:40223794-40223813 | Msa0070230:CDS | 35.0% | |
!! | GAGGAAGAAGAATTTTTGAG+TGG | + | chr1_2:40223903-40223922 | Msa0070230:CDS | 35.0% |
ATTCAAGGAAAAATGGGCAT+GGG | + | chr1_2:40223989-40224008 | Msa0070230:CDS | 35.0% | |
! | CACTTTGAAAGAGTTGTCAA+CGG | + | chr1_2:40224128-40224147 | Msa0070230:CDS | 35.0% |
TCTTGGAGTGTAAACATTGT+CGG | - | chr1_2:40224243-40224262 | None:intergenic | 35.0% | |
GGAATTCCAAGATGAATATG+AGG | + | chr1_2:40224271-40224290 | Msa0070230:CDS | 35.0% | |
GACATTCCTCATATTCATCT+TGG | - | chr1_2:40224280-40224299 | None:intergenic | 35.0% | |
ATTATGATAACAGCAAGGAG+CGG | + | chr1_2:40224348-40224367 | Msa0070230:CDS | 35.0% | |
GATAGTAGTAGCGAATCATA+TGG | + | chr1_2:40224370-40224389 | Msa0070230:CDS | 35.0% | |
GGTTGGGATGTAATCAAAAT+TGG | + | chr1_2:40224531-40224550 | Msa0070230:CDS | 35.0% | |
GAAAGGGGAACATATTGAAT+TGG | + | chr1_2:40224553-40224572 | Msa0070230:CDS | 35.0% | |
CTGACTAAAAAGTCTATGGA+TGG | + | chr1_2:40224719-40224738 | Msa0070230:CDS | 35.0% | |
TAGTCCTATCTAAGCAATCT+CGG | - | chr1_2:40224847-40224866 | None:intergenic | 35.0% | |
!! | CTAAAAAAAGGCATCCAACT+TGG | + | chr1_2:40224864-40224883 | Msa0070230:CDS | 35.0% |
AAATCTCCTGCAAACAATGA+TGG | + | chr1_2:40225047-40225066 | Msa0070230:CDS | 35.0% | |
ATGGAAGTCTACATGAGATT+AGG | + | chr1_2:40225336-40225355 | Msa0070230:CDS | 35.0% | |
!! | TAAGTTGATGACATGGAAGG+AGG | - | chr1_2:40222033-40222052 | None:intergenic | 40.0% |
!! | TGGCAACTAAGTTGATGACA+TGG | - | chr1_2:40222040-40222059 | None:intergenic | 40.0% |
! | AAAAGCATAAACTGCGCAGT+TGG | + | chr1_2:40222091-40222110 | Msa0070230:intron | 40.0% |
GTGGCACATTAAAACTCCAA+TGG | + | chr1_2:40222234-40222253 | Msa0070230:intron | 40.0% | |
!! | TATTGGTTCAGACCATAGAG+AGG | - | chr1_2:40222369-40222388 | None:intergenic | 40.0% |
AAGTCACAGTAATGAGGAGA+AGG | - | chr1_2:40222410-40222429 | None:intergenic | 40.0% | |
GATGGTAAGTCACAGTAATG+AGG | - | chr1_2:40222416-40222435 | None:intergenic | 40.0% | |
AAATTCAGAATCGACGTCGT+CGG | - | chr1_2:40222497-40222516 | None:intergenic | 40.0% | |
GTCTACAATACAGTGGAACA+AGG | - | chr1_2:40222527-40222546 | None:intergenic | 40.0% | |
ACATCCAATCCAATGGTTGA+AGG | + | chr1_2:40222781-40222800 | Msa0070230:CDS | 40.0% | |
TACACCTTCAACCATTGGAT+TGG | - | chr1_2:40222788-40222807 | None:intergenic | 40.0% | |
GTGAATGATATCGTGCAACA+GGG | + | chr1_2:40222817-40222836 | Msa0070230:CDS | 40.0% | |
TCAAACTCCATTTCCAAGTG+TGG | - | chr1_2:40222868-40222887 | None:intergenic | 40.0% | |
AACAGGATGTTTAGCACGTA+TGG | + | chr1_2:40223080-40223099 | Msa0070230:CDS | 40.0% | |
TTTGTGTCAAAACAAGCTGG+TGG | + | chr1_2:40223288-40223307 | Msa0070230:CDS | 40.0% | |
CTAAAAGGAACCACTCACTA+AGG | + | chr1_2:40223361-40223380 | Msa0070230:CDS | 40.0% | |
TCACTAAGGTATGGTGAAGT+AGG | + | chr1_2:40223375-40223394 | Msa0070230:CDS | 40.0% | |
AACAGATCAAGATGCAGCAA+TGG | + | chr1_2:40223731-40223750 | Msa0070230:CDS | 40.0% | |
GTCATGCCAGAAACATTTCA+TGG | + | chr1_2:40223771-40223790 | Msa0070230:CDS | 40.0% | |
! | CATTTCATGGATTGTGCACT+TGG | + | chr1_2:40223784-40223803 | Msa0070230:CDS | 40.0% |
GATTGTGCACTTGGCATATA+AGG | + | chr1_2:40223793-40223812 | Msa0070230:CDS | 40.0% | |
! | ATGCATTGATCTACACGAAG+AGG | + | chr1_2:40223884-40223903 | Msa0070230:CDS | 40.0% |
!!! | AGAATTTTTGAGTGGATGGG+AGG | + | chr1_2:40223911-40223930 | Msa0070230:CDS | 40.0% |
GATTCAAGGAAAAATGGGCA+TGG | + | chr1_2:40223988-40224007 | Msa0070230:CDS | 40.0% | |
AAAGAGTTGTCAACGGAAAG+CGG | + | chr1_2:40224135-40224154 | Msa0070230:CDS | 40.0% | |
! | TGTCGAAAGTTTGAGACACA+TGG | + | chr1_2:40224413-40224432 | Msa0070230:CDS | 40.0% |
TTGCTCAATTTAACTGCTCG+AGG | - | chr1_2:40224620-40224639 | None:intergenic | 40.0% | |
TCTATGGATGGAGAGTCAAT+TGG | + | chr1_2:40224731-40224750 | Msa0070230:CDS | 40.0% | |
AATGTGGACACTGTTGATCT+TGG | + | chr1_2:40224800-40224819 | Msa0070230:CDS | 40.0% | |
! | TCCAACTTGGCTTGAGAAAT+TGG | + | chr1_2:40224877-40224896 | Msa0070230:CDS | 40.0% |
TCCAATTTCTCAAGCCAAGT+TGG | - | chr1_2:40224881-40224900 | None:intergenic | 40.0% | |
TGTGTACCATCATTGTTTGC+AGG | - | chr1_2:40225056-40225075 | None:intergenic | 40.0% | |
! | GATGGTACACATGCTTTGAA+TGG | + | chr1_2:40225065-40225084 | Msa0070230:CDS | 40.0% |
! | GTACACATGCTTTGAATGGA+AGG | + | chr1_2:40225069-40225088 | Msa0070230:CDS | 40.0% |
AATGGAAGCCAATCTGGATA+TGG | + | chr1_2:40225245-40225264 | Msa0070230:CDS | 40.0% | |
ATATGGAAGCCATGCTTTGA+TGG | + | chr1_2:40225262-40225281 | Msa0070230:CDS | 40.0% | |
! | TTTGAGATGCCATCAAAGCA+TGG | - | chr1_2:40225274-40225293 | None:intergenic | 40.0% |
CCATTGTCAGCTTCTGTTAA+AGG | - | chr1_2:40225320-40225339 | None:intergenic | 40.0% | |
CCTTTAACAGAAGCTGACAA+TGG | + | chr1_2:40225317-40225336 | Msa0070230:CDS | 40.0% | |
! | AAGACATGAAGGTTTTCCCT+TGG | - | chr1_2:40225669-40225688 | None:intergenic | 40.0% |
TAGGTCGTCACAGTAACATA+TGG | + | chr1_2:40225728-40225747 | Msa0070230:CDS | 40.0% | |
GTCACAGTAACATATGGTGT+TGG | + | chr1_2:40225734-40225753 | Msa0070230:CDS | 40.0% | |
!! | TATGGTGTTGGCTTCTAGAA+AGG | + | chr1_2:40225746-40225765 | Msa0070230:CDS | 40.0% |
!! | ATGGTGTTGGCTTCTAGAAA+GGG | + | chr1_2:40225747-40225766 | Msa0070230:CDS | 40.0% |
!!! | CAACTGACTTGGCATGGTTT+TGG | - | chr1_2:40221798-40221817 | None:intergenic | 45.0% |
!! | ACTGTTCAACTGACTTGGCA+TGG | - | chr1_2:40221804-40221823 | None:intergenic | 45.0% |
ATGCCAAGTCAGTTGAACAG+TGG | + | chr1_2:40221803-40221822 | Msa0070230:intron | 45.0% | |
TGCCAAGTCAGTTGAACAGT+GGG | + | chr1_2:40221804-40221823 | Msa0070230:intron | 45.0% | |
TGGCATGTGAGATGCTTATG+TGG | - | chr1_2:40222060-40222079 | None:intergenic | 45.0% | |
TTGAGTATGAGCTTGACACG+TGG | + | chr1_2:40222215-40222234 | Msa0070230:intron | 45.0% | |
TGAAGGAAGTGAAACGACGA+AGG | - | chr1_2:40222346-40222365 | None:intergenic | 45.0% | |
TCACTTCCTTCACCTCTCTA+TGG | + | chr1_2:40222354-40222373 | Msa0070230:intron | 45.0% | |
TTCAGACCATAGAGAGGTGA+AGG | - | chr1_2:40222363-40222382 | None:intergenic | 45.0% | |
GGTTGGGAACACCATAGTAT+TGG | - | chr1_2:40222386-40222405 | None:intergenic | 45.0% | |
GTAATGAGGAGAAGGAGGTT+GGG | - | chr1_2:40222402-40222421 | None:intergenic | 45.0% | |
AGTAATGAGGAGAAGGAGGT+TGG | - | chr1_2:40222403-40222422 | None:intergenic | 45.0% | |
TCACAGTAATGAGGAGAAGG+AGG | - | chr1_2:40222407-40222426 | None:intergenic | 45.0% | |
GCTTCAGGTCTACAATACAG+TGG | - | chr1_2:40222534-40222553 | None:intergenic | 45.0% | |
!! | ACGTGTGTCGTTTCTACCAT+TGG | - | chr1_2:40222562-40222581 | None:intergenic | 45.0% |
GGTGAATGATATCGTGCAAC+AGG | + | chr1_2:40222816-40222835 | Msa0070230:CDS | 45.0% | |
GGAAATGGAGTTTGAGTCTG+AGG | + | chr1_2:40222873-40222892 | Msa0070230:CDS | 45.0% | |
GCTGGTGGAATAAACACTGT+TGG | + | chr1_2:40223303-40223322 | Msa0070230:CDS | 45.0% | |
AGGAACCACTCACTAAGGTA+TGG | + | chr1_2:40223366-40223385 | Msa0070230:CDS | 45.0% | |
CTTCACCATACCTTAGTGAG+TGG | - | chr1_2:40223374-40223393 | None:intergenic | 45.0% | |
AGGCCAACAAATACTCCCAA+CGG | - | chr1_2:40223585-40223604 | None:intergenic | 45.0% | |
ACCTTTCTCAAAGCAATGGG+TGG | + | chr1_2:40223687-40223706 | Msa0070230:CDS | 45.0% | |
CCTTTCTCAAAGCAATGGGT+GGG | + | chr1_2:40223688-40223707 | Msa0070230:CDS | 45.0% | |
TCAAGATGCAGCAATGGCTA+AGG | + | chr1_2:40223737-40223756 | Msa0070230:CDS | 45.0% | |
!! | TGTCGGCTTGTACAAGCATA+GGG | - | chr1_2:40224226-40224245 | None:intergenic | 45.0% |
!! | TTGTCGGCTTGTACAAGCAT+AGG | - | chr1_2:40224227-40224246 | None:intergenic | 45.0% |
AACGTTGGACAAGAGATGCA+AGG | + | chr1_2:40224510-40224529 | Msa0070230:CDS | 45.0% | |
TTGGACAAGAGATGCAAGGT+TGG | + | chr1_2:40224514-40224533 | Msa0070230:CDS | 45.0% | |
TGGACAAGAGATGCAAGGTT+GGG | + | chr1_2:40224515-40224534 | Msa0070230:CDS | 45.0% | |
TGGACACTGTTGATCTTGGT+GGG | + | chr1_2:40224804-40224823 | Msa0070230:CDS | 45.0% | |
AGAGCCGAGATTGCTTAGAT+AGG | + | chr1_2:40224840-40224859 | Msa0070230:CDS | 45.0% | |
CCAAGCATGTATGCCATCAT+GGG | - | chr1_2:40225225-40225244 | None:intergenic | 45.0% | |
TCCAAGCATGTATGCCATCA+TGG | - | chr1_2:40225226-40225245 | None:intergenic | 45.0% | |
GATGGCATACATGCTTGGAA+TGG | + | chr1_2:40225227-40225246 | Msa0070230:CDS | 45.0% | |
CATGGCTTCCATATCCAGAT+TGG | - | chr1_2:40225256-40225275 | None:intergenic | 45.0% | |
GAACGAGAAAGGGCAGATTT+AGG | + | chr1_2:40225709-40225728 | Msa0070230:CDS | 45.0% | |
!! | TGTTGGCTTCTAGAAAGGGT+AGG | + | chr1_2:40225751-40225770 | Msa0070230:CDS | 45.0% |
GAAAGGGTAGGTTTGCAAAG+AGG | + | chr1_2:40225763-40225782 | Msa0070230:CDS | 45.0% | |
!!! | CAAAAAAATTAATTTTATAT+TGG | + | chr1_2:40221399-40221418 | Msa0070230:intron | 5.0% |
!!! | TTTTAAAATTTAATATTATG+TGG | + | chr1_2:40221717-40221736 | Msa0070230:intron | 5.0% |
ATGCCAAGTCAGCTGAACAG+CGG | - | chr1_2:40220881-40220900 | None:intergenic | 50.0% | |
! | ACTGTGCAACTTTTGCCACG+TGG | + | chr1_2:40220926-40220945 | Msa0070230:intron | 50.0% |
!!! | TTGGCATGGTTTTGGCCATG+TGG | - | chr1_2:40221790-40221809 | None:intergenic | 50.0% |
GCCAAGTCAGTTGAACAGTG+GGG | + | chr1_2:40221805-40221824 | Msa0070230:intron | 50.0% | |
TCGTTGCTTCACTTCTGCGT+TGG | + | chr1_2:40222458-40222477 | Msa0070230:intron | 50.0% | |
! | AGACCTGAAGCTTGCTCCAA+TGG | + | chr1_2:40222543-40222562 | Msa0070230:intron | 50.0% |
CTACCATTGGAGCAAGCTTC+AGG | - | chr1_2:40222549-40222568 | None:intergenic | 50.0% | |
TCACCATTCATCACCACCTC+TGG | + | chr1_2:40222600-40222619 | Msa0070230:CDS | 50.0% | |
CACCATTCATCACCACCTCT+GGG | + | chr1_2:40222601-40222620 | Msa0070230:CDS | 50.0% | |
AAAATCTTACCGGTGCCCAG+AGG | - | chr1_2:40222619-40222638 | None:intergenic | 50.0% | |
GCTCGAGCAGAAACTAGAAC+AGG | + | chr1_2:40223063-40223082 | Msa0070230:CDS | 50.0% | |
CATACTCAGCTGGCAGAAGA+AGG | - | chr1_2:40223170-40223189 | None:intergenic | 50.0% | |
!! | CGTCCGTTGGGAGTATTTGT+TGG | + | chr1_2:40223579-40223598 | Msa0070230:CDS | 50.0% |
!! | CCCACCCATTGCTTTGAGAA+AGG | - | chr1_2:40223691-40223710 | None:intergenic | 50.0% |
GTGCGAAAGACTTTCACTGC+AGG | + | chr1_2:40224017-40224036 | Msa0070230:CDS | 50.0% | |
GTGGACACTGTTGATCTTGG+TGG | + | chr1_2:40224803-40224822 | Msa0070230:CDS | 50.0% | |
GGACACTGTTGATCTTGGTG+GGG | + | chr1_2:40224805-40224824 | Msa0070230:CDS | 50.0% | |
CAATCTCCAGCAACCCATGA+TGG | + | chr1_2:40225209-40225228 | Msa0070230:CDS | 50.0% | |
! | TGTATGCCATCATGGGTTGC+TGG | - | chr1_2:40225218-40225237 | None:intergenic | 50.0% |
CCCATGATGGCATACATGCT+TGG | + | chr1_2:40225222-40225241 | Msa0070230:CDS | 50.0% | |
GCTTGGAATGGAAGCCAATC+TGG | + | chr1_2:40225239-40225258 | Msa0070230:CDS | 50.0% | |
!! | GAGGGCTTTGCTTTGAGATG+CGG | + | chr1_2:40225805-40225824 | Msa0070230:CDS | 50.0% |
!! | TTTGCTTTGAGATGCGGCGA+CGG | + | chr1_2:40225811-40225830 | Msa0070230:CDS | 50.0% |
TGCCAAGTCAGCTGAACAGC+GGG | - | chr1_2:40220880-40220899 | None:intergenic | 55.0% | |
!! | GCTGTTCAGCTGACTTGGCA+TGG | + | chr1_2:40220880-40220899 | Msa0070230:CDS | 55.0% |
TTGGCATGGTATTCGCCACG+TGG | + | chr1_2:40220894-40220913 | Msa0070230:intron | 55.0% | |
ACTGTGCAACTTTCGCCACG+TGG | - | chr1_2:40221758-40221777 | None:intergenic | 55.0% | |
CACAGTCAGCAACTGCCACA+TGG | + | chr1_2:40221772-40221791 | Msa0070230:intron | 55.0% | |
GCCCCACTGTTCAACTGACT+TGG | - | chr1_2:40221809-40221828 | None:intergenic | 55.0% | |
TCAGTTGAACAGTGGGGCCA+GGG | + | chr1_2:40221811-40221830 | Msa0070230:intron | 55.0% | |
TTCAGAATCGACGTCGTCGG+AGG | - | chr1_2:40222494-40222513 | None:intergenic | 55.0% | |
! | TGCCCAGAGGTGGTGATGAA+TGG | - | chr1_2:40222606-40222625 | None:intergenic | 55.0% |
! | GGAGTTTGAGTCTGAGGCCT+TGG | + | chr1_2:40222879-40222898 | Msa0070230:CDS | 55.0% |
TGCTCCAAAGAGGGTAGACG+CGG | + | chr1_2:40223009-40223028 | Msa0070230:CDS | 55.0% | |
! | AGGTTTGCAAAGAGGCGCGA+CGG | + | chr1_2:40225771-40225790 | Msa0070230:CDS | 55.0% |
GCCAAGTCAGCTGAACAGCG+GGG | - | chr1_2:40220879-40220898 | None:intergenic | 60.0% | |
CACAGTCAGCAACTGCCACG+TGG | - | chr1_2:40220912-40220931 | None:intergenic | 60.0% | |
GTCAGTTGAACAGTGGGGCC+AGG | + | chr1_2:40221810-40221829 | Msa0070230:intron | 60.0% | |
TCATCACCACCTCTGGGCAC+CGG | + | chr1_2:40222607-40222626 | Msa0070230:CDS | 60.0% | |
ATCTTACCGGTGCCCAGAGG+TGG | - | chr1_2:40222616-40222635 | None:intergenic | 60.0% | |
GACACCGCGTCTACCCTCTT+TGG | - | chr1_2:40223016-40223035 | None:intergenic | 60.0% | |
! | TTTGCAAAGAGGCGCGACGG+TGG | + | chr1_2:40225774-40225793 | Msa0070230:CDS | 60.0% |
GCCCCGCTGTTCAGCTGACT+TGG | + | chr1_2:40220875-40220894 | Msa0070230:CDS | 65.0% | |
!! | TTTGCCACGTGGCGCTGACG+TGG | + | chr1_2:40220937-40220956 | Msa0070230:intron | 65.0% |
!! | GCTTTGAGATGCGGCGACGG+CGG | + | chr1_2:40225814-40225833 | Msa0070230:CDS | 65.0% |
GTCAGCTGAACAGCGGGGCC+AGG | - | chr1_2:40220874-40220893 | None:intergenic | 70.0% | |
!! | TTCGCCACGTGGCGCTGACG+TGG | - | chr1_2:40221747-40221766 | None:intergenic | 70.0% |
! | AAGAGGCGCGACGGTGGCAG+TGG | + | chr1_2:40225780-40225799 | Msa0070230:CDS | 70.0% |
TGCGGCGACGGCGGAAGTGA+CGG | + | chr1_2:40225823-40225842 | Msa0070230:CDS | 70.0% | |
!! | GCCACGTGGCGCTGACGTGG+CGG | + | chr1_2:40220940-40220959 | Msa0070230:intron | 75.0% |
ACCGCCACGTCAGCGCCACG+TGG | - | chr1_2:40220944-40220963 | None:intergenic | 75.0% | |
CACGCCACGTCAGCGCCACG+TGG | + | chr1_2:40221740-40221759 | Msa0070230:intron | 75.0% | |
AGGCGCGACGGTGGCAGTGG+CGG | + | chr1_2:40225783-40225802 | Msa0070230:CDS | 75.0% | |
! | GCGACGGTGGCAGTGGCGGA+GGG | + | chr1_2:40225787-40225806 | Msa0070230:CDS | 75.0% |
GGCGACGGCGGAAGTGACGG+AGG | + | chr1_2:40225826-40225845 | Msa0070230:CDS | 75.0% | |
! | CGCGACGGTGGCAGTGGCGG+AGG | + | chr1_2:40225786-40225805 | Msa0070230:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 40220865 | 40225855 | 40220865 | ID=Msa0070230;Name=Msa0070230 |
chr1_2 | mRNA | 40220865 | 40225855 | 40220865 | ID=Msa0070230-mRNA-1;Parent=Msa0070230;Name=Msa0070230-mRNA-1;_AED=0.27;_eAED=0.28;_QI=0|0|0|0.5|1|1|6|0|894 |
chr1_2 | exon | 40220865 | 40220901 | 40220865 | ID=Msa0070230-mRNA-1:exon:12315;Parent=Msa0070230-mRNA-1 |
chr1_2 | exon | 40222545 | 40222628 | 40222545 | ID=Msa0070230-mRNA-1:exon:12316;Parent=Msa0070230-mRNA-1 |
chr1_2 | exon | 40222767 | 40224949 | 40222767 | ID=Msa0070230-mRNA-1:exon:12317;Parent=Msa0070230-mRNA-1 |
chr1_2 | exon | 40225044 | 40225109 | 40225044 | ID=Msa0070230-mRNA-1:exon:12318;Parent=Msa0070230-mRNA-1 |
chr1_2 | exon | 40225206 | 40225366 | 40225206 | ID=Msa0070230-mRNA-1:exon:12319;Parent=Msa0070230-mRNA-1 |
chr1_2 | exon | 40225702 | 40225855 | 40225702 | ID=Msa0070230-mRNA-1:exon:12320;Parent=Msa0070230-mRNA-1 |
chr1_2 | CDS | 40220865 | 40220901 | 40220865 | ID=Msa0070230-mRNA-1:cds;Parent=Msa0070230-mRNA-1 |
chr1_2 | CDS | 40222545 | 40222628 | 40222545 | ID=Msa0070230-mRNA-1:cds;Parent=Msa0070230-mRNA-1 |
chr1_2 | CDS | 40222767 | 40224949 | 40222767 | ID=Msa0070230-mRNA-1:cds;Parent=Msa0070230-mRNA-1 |
chr1_2 | CDS | 40225044 | 40225109 | 40225044 | ID=Msa0070230-mRNA-1:cds;Parent=Msa0070230-mRNA-1 |
chr1_2 | CDS | 40225206 | 40225366 | 40225206 | ID=Msa0070230-mRNA-1:cds;Parent=Msa0070230-mRNA-1 |
chr1_2 | CDS | 40225702 | 40225855 | 40225702 | ID=Msa0070230-mRNA-1:cds;Parent=Msa0070230-mRNA-1 |
Gene Sequence |
Protein sequence |