Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0160900 | XP_024629994.1 | 68.077 | 780 | 201 | 7 | 41 | 774 | 14 | 791 | 0.0 | 1075 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0160900 | sp|Q9SZL8|FRS5_ARATH | 32.964 | 631 | 377 | 9 | 74 | 661 | 73 | 700 | 4.45e-104 | 343 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0160900 | A0A3Q7Y261 | 72.490 | 727 | 162 | 4 | 43 | 734 | 1 | 724 | 0.0 | 1067 |
Gene ID | Type | Classification |
---|---|---|
Msa0160900 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0070230 | Msa0160900 | 0.922027 | 1.676097e-88 | -8.615850e-47 |
Msa0160900 | Msa0270480 | 0.861537 | 9.568294e-64 | -8.615850e-47 |
Msa0160900 | Msa0309040 | 0.896224 | 4.528740e-76 | -8.615850e-47 |
Msa0160900 | Msa0747180 | 0.893144 | 8.261668e-75 | -8.615850e-47 |
Msa0160900 | Msa0875920 | 0.846031 | 2.804317e-59 | -8.615850e-47 |
Msa0160900 | Msa1033330 | 0.882085 | 1.400348e-70 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0160900 | MtrunA17_Chr3g0082121 | 69.871 | 697 | 164 | 3 | 40 | 698 | 5 | 693 | 0.0 | 993 |
Msa0160900 | MtrunA17_Chr1g0164591 | 76.677 | 313 | 65 | 1 | 152 | 464 | 1 | 305 | 7.87e-177 | 513 |
Msa0160900 | MtrunA17_Chr2g0324011 | 43.501 | 577 | 283 | 6 | 74 | 610 | 10 | 583 | 6.08e-155 | 466 |
Msa0160900 | MtrunA17_Chr1g0203721 | 38.462 | 637 | 349 | 6 | 80 | 675 | 69 | 703 | 2.13e-145 | 451 |
Msa0160900 | MtrunA17_Chr6g0458391 | 40.773 | 569 | 278 | 8 | 67 | 596 | 218 | 766 | 1.44e-144 | 446 |
Msa0160900 | MtrunA17_Chr6g0458391 | 34.161 | 161 | 101 | 3 | 45 | 205 | 65 | 220 | 3.86e-20 | 95.9 |
Msa0160900 | MtrunA17_Chr5g0448761 | 33.123 | 634 | 376 | 7 | 74 | 661 | 60 | 691 | 1.59e-112 | 362 |
Msa0160900 | MtrunA17_Chr5g0401121 | 92.593 | 162 | 12 | 0 | 19 | 180 | 1 | 162 | 1.49e-101 | 312 |
Msa0160900 | MtrunA17_Chr1g0202341 | 33.984 | 615 | 344 | 13 | 74 | 636 | 47 | 651 | 1.17e-99 | 325 |
Msa0160900 | MtrunA17_Chr8g0363841 | 32.194 | 556 | 324 | 9 | 86 | 595 | 29 | 577 | 1.30e-95 | 314 |
Msa0160900 | MtrunA17_Chr1g0207551 | 30.034 | 596 | 366 | 9 | 74 | 629 | 34 | 618 | 3.30e-86 | 292 |
Msa0160900 | MtrunA17_Chr2g0287651 | 30.638 | 643 | 385 | 11 | 76 | 669 | 77 | 707 | 5.35e-86 | 293 |
Msa0160900 | MtrunA17_Chr2g0329031 | 29.969 | 644 | 383 | 16 | 74 | 674 | 14 | 632 | 1.10e-82 | 281 |
Msa0160900 | MtrunA17_Chr3g0080351 | 29.985 | 667 | 381 | 17 | 74 | 686 | 76 | 710 | 1.44e-81 | 280 |
Msa0160900 | MtrunA17_Chr7g0258861 | 49.653 | 288 | 137 | 6 | 74 | 356 | 10 | 294 | 1.13e-80 | 262 |
Msa0160900 | MtrunA17_Chr5g0440451 | 29.518 | 664 | 379 | 16 | 58 | 657 | 26 | 664 | 4.09e-76 | 266 |
Msa0160900 | MtrunA17_Chr3g0118611 | 32.500 | 480 | 274 | 9 | 253 | 691 | 122 | 592 | 1.39e-72 | 254 |
Msa0160900 | MtrunA17_Chr2g0287061 | 29.485 | 563 | 316 | 13 | 74 | 597 | 183 | 703 | 4.07e-68 | 242 |
Msa0160900 | MtrunA17_Chr2g0296781 | 30.314 | 574 | 326 | 20 | 78 | 595 | 1 | 556 | 9.18e-68 | 239 |
Msa0160900 | MtrunA17_Chr5g0448511 | 30.736 | 462 | 271 | 6 | 258 | 679 | 22 | 474 | 2.15e-67 | 234 |
Msa0160900 | MtrunA17_Chr2g0276841 | 28.748 | 567 | 358 | 10 | 68 | 592 | 64 | 626 | 3.07e-66 | 234 |
Msa0160900 | MtrunA17_Chr1g0203051 | 27.353 | 563 | 349 | 11 | 66 | 582 | 73 | 621 | 2.51e-65 | 231 |
Msa0160900 | MtrunA17_Chr1g0198761 | 29.204 | 565 | 348 | 12 | 80 | 596 | 53 | 613 | 5.42e-65 | 232 |
Msa0160900 | MtrunA17_Chr2g0294841 | 26.124 | 712 | 437 | 16 | 66 | 709 | 37 | 727 | 8.37e-64 | 229 |
Msa0160900 | MtrunA17_Chr5g0441581 | 28.059 | 613 | 373 | 17 | 74 | 638 | 32 | 624 | 8.32e-62 | 222 |
Msa0160900 | MtrunA17_Chr1g0149131 | 77.679 | 112 | 25 | 0 | 353 | 464 | 1 | 112 | 2.53e-59 | 197 |
Msa0160900 | MtrunA17_Chr2g0290391 | 26.560 | 689 | 435 | 18 | 39 | 678 | 26 | 692 | 1.57e-57 | 209 |
Msa0160900 | MtrunA17_Chr2g0291581 | 28.451 | 594 | 343 | 15 | 59 | 598 | 59 | 624 | 6.40e-57 | 208 |
Msa0160900 | MtrunA17_Chr6g0477261 | 30.769 | 455 | 239 | 14 | 201 | 595 | 7 | 445 | 1.71e-54 | 200 |
Msa0160900 | MtrunA17_Chr1g0196541 | 27.352 | 574 | 337 | 17 | 78 | 592 | 1 | 553 | 5.45e-50 | 188 |
Msa0160900 | MtrunA17_Chr5g0431001 | 29.882 | 425 | 276 | 9 | 73 | 481 | 60 | 478 | 2.11e-47 | 176 |
Msa0160900 | MtrunA17_Chr2g0291591 | 25.630 | 476 | 301 | 9 | 78 | 513 | 68 | 530 | 8.13e-42 | 161 |
Msa0160900 | MtrunA17_Chr4g0033611 | 46.296 | 108 | 52 | 3 | 74 | 179 | 76 | 179 | 1.44e-20 | 92.4 |
Msa0160900 | MtrunA17_Chr2g0329421 | 41.379 | 116 | 58 | 4 | 74 | 183 | 27 | 138 | 2.51e-19 | 87.4 |
Msa0160900 | MtrunA17_Chr7g0238821 | 44.037 | 109 | 57 | 3 | 78 | 185 | 1 | 106 | 6.49e-17 | 77.4 |
Msa0160900 | MtrunA17_Chr3g0078041 | 39.048 | 105 | 62 | 2 | 74 | 177 | 50 | 153 | 1.01e-13 | 71.6 |
Msa0160900 | MtrunA17_Chr7g0233911 | 37.143 | 105 | 62 | 3 | 74 | 176 | 34 | 136 | 3.46e-13 | 69.7 |
Msa0160900 | MtrunA17_Chr2g0329361 | 32.414 | 145 | 92 | 4 | 60 | 200 | 47 | 189 | 2.99e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0160900 | AT4G38180.1 | 32.964 | 631 | 377 | 9 | 74 | 661 | 73 | 700 | 4.53e-105 | 343 |
Msa0160900 | AT4G15090.1 | 30.449 | 624 | 386 | 8 | 74 | 657 | 51 | 666 | 2.84e-90 | 304 |
Msa0160900 | AT4G15090.5 | 30.449 | 624 | 386 | 8 | 74 | 657 | 51 | 666 | 2.84e-90 | 304 |
Msa0160900 | AT4G15090.3 | 30.449 | 624 | 386 | 8 | 74 | 657 | 51 | 666 | 2.84e-90 | 304 |
Msa0160900 | AT4G15090.2 | 30.449 | 624 | 386 | 8 | 74 | 657 | 51 | 666 | 2.84e-90 | 304 |
Msa0160900 | AT4G15090.4 | 30.449 | 624 | 386 | 8 | 74 | 657 | 51 | 666 | 2.84e-90 | 304 |
Msa0160900 | AT3G22170.2 | 31.562 | 621 | 330 | 13 | 78 | 640 | 74 | 657 | 2.68e-87 | 296 |
Msa0160900 | AT3G22170.1 | 31.562 | 621 | 330 | 13 | 78 | 640 | 74 | 657 | 2.68e-87 | 296 |
Msa0160900 | AT2G27110.2 | 30.274 | 621 | 358 | 14 | 74 | 653 | 49 | 635 | 1.24e-79 | 275 |
Msa0160900 | AT2G27110.1 | 30.274 | 621 | 358 | 14 | 74 | 653 | 49 | 635 | 1.24e-79 | 275 |
Msa0160900 | AT1G76320.3 | 30.832 | 613 | 369 | 14 | 78 | 652 | 1 | 596 | 1.52e-79 | 271 |
Msa0160900 | AT1G76320.2 | 30.832 | 613 | 369 | 14 | 78 | 652 | 1 | 596 | 2.83e-79 | 271 |
Msa0160900 | AT1G76320.1 | 30.832 | 613 | 369 | 14 | 78 | 652 | 1 | 596 | 3.26e-79 | 271 |
Msa0160900 | AT1G76320.4 | 30.832 | 613 | 369 | 14 | 78 | 652 | 1 | 596 | 3.26e-79 | 271 |
Msa0160900 | AT3G06250.2 | 28.275 | 626 | 363 | 15 | 65 | 652 | 181 | 758 | 4.52e-69 | 244 |
Msa0160900 | AT3G06250.1 | 28.275 | 626 | 363 | 15 | 65 | 652 | 181 | 758 | 4.52e-69 | 244 |
Msa0160900 | AT3G06250.3 | 28.275 | 626 | 363 | 15 | 65 | 652 | 181 | 758 | 4.52e-69 | 244 |
Msa0160900 | AT5G18960.2 | 28.910 | 633 | 358 | 17 | 62 | 652 | 200 | 782 | 1.54e-68 | 243 |
Msa0160900 | AT5G18960.2 | 33.051 | 118 | 65 | 2 | 59 | 176 | 28 | 131 | 5.52e-11 | 67.0 |
Msa0160900 | AT5G18960.1 | 28.910 | 633 | 358 | 17 | 62 | 652 | 200 | 782 | 1.54e-68 | 243 |
Msa0160900 | AT5G18960.1 | 33.051 | 118 | 65 | 2 | 59 | 176 | 28 | 131 | 5.52e-11 | 67.0 |
Msa0160900 | AT2G27110.3 | 31.818 | 440 | 257 | 8 | 253 | 653 | 55 | 490 | 3.59e-67 | 238 |
Msa0160900 | AT2G32250.8 | 27.950 | 644 | 359 | 14 | 78 | 670 | 1 | 590 | 1.19e-66 | 237 |
Msa0160900 | AT2G32250.5 | 28.217 | 645 | 356 | 15 | 78 | 670 | 42 | 631 | 1.25e-66 | 237 |
Msa0160900 | AT2G32250.7 | 27.950 | 644 | 359 | 14 | 78 | 670 | 1 | 590 | 1.39e-66 | 237 |
Msa0160900 | AT2G32250.2 | 27.950 | 644 | 359 | 14 | 78 | 670 | 42 | 631 | 1.58e-66 | 238 |
Msa0160900 | AT2G32250.4 | 27.950 | 644 | 359 | 14 | 78 | 670 | 42 | 631 | 1.58e-66 | 238 |
Msa0160900 | AT2G32250.6 | 27.950 | 644 | 359 | 14 | 78 | 670 | 42 | 631 | 1.92e-66 | 238 |
Msa0160900 | AT2G32250.1 | 27.950 | 644 | 359 | 14 | 78 | 670 | 42 | 631 | 1.92e-66 | 238 |
Msa0160900 | AT2G32250.3 | 27.950 | 644 | 359 | 14 | 78 | 670 | 42 | 631 | 1.92e-66 | 238 |
Msa0160900 | AT1G10240.2 | 27.817 | 568 | 364 | 10 | 67 | 592 | 41 | 604 | 1.28e-63 | 227 |
Msa0160900 | AT1G10240.1 | 27.817 | 568 | 364 | 10 | 67 | 592 | 41 | 604 | 1.28e-63 | 227 |
Msa0160900 | AT5G28530.3 | 26.746 | 587 | 381 | 13 | 74 | 615 | 55 | 637 | 5.03e-57 | 208 |
Msa0160900 | AT5G28530.2 | 26.746 | 587 | 381 | 13 | 74 | 615 | 55 | 637 | 5.03e-57 | 208 |
Msa0160900 | AT5G28530.1 | 26.565 | 591 | 381 | 13 | 74 | 615 | 55 | 641 | 1.50e-56 | 207 |
Msa0160900 | AT4G19990.5 | 27.612 | 670 | 381 | 15 | 79 | 686 | 26 | 653 | 3.64e-55 | 204 |
Msa0160900 | AT4G19990.6 | 27.463 | 670 | 382 | 15 | 79 | 686 | 26 | 653 | 3.65e-55 | 204 |
Msa0160900 | AT4G19990.2 | 27.463 | 670 | 382 | 15 | 79 | 686 | 26 | 653 | 3.65e-55 | 204 |
Msa0160900 | AT4G19990.3 | 27.612 | 670 | 381 | 15 | 79 | 686 | 26 | 653 | 4.21e-55 | 204 |
Msa0160900 | AT4G19990.4 | 27.612 | 670 | 381 | 15 | 79 | 686 | 26 | 653 | 4.21e-55 | 204 |
Msa0160900 | AT4G19990.7 | 27.612 | 670 | 381 | 15 | 79 | 686 | 40 | 667 | 4.87e-55 | 204 |
Msa0160900 | AT1G80010.1 | 28.331 | 593 | 336 | 15 | 70 | 595 | 91 | 661 | 4.55e-54 | 201 |
Msa0160900 | AT4G38170.1 | 29.024 | 379 | 224 | 6 | 258 | 596 | 27 | 400 | 1.98e-52 | 192 |
Msa0160900 | AT1G52520.1 | 26.829 | 574 | 352 | 15 | 72 | 595 | 83 | 638 | 3.21e-50 | 189 |
Msa0160900 | AT4G19990.1 | 26.887 | 636 | 361 | 15 | 113 | 686 | 3 | 596 | 1.10e-47 | 181 |
Msa0160900 | AT5G28530.5 | 23.917 | 577 | 347 | 13 | 74 | 615 | 55 | 574 | 2.35e-38 | 152 |
Msa0160900 | AT5G28530.4 | 23.752 | 581 | 347 | 13 | 74 | 615 | 55 | 578 | 1.09e-37 | 150 |
Msa0160900 | AT3G59470.3 | 46.226 | 106 | 55 | 2 | 74 | 179 | 70 | 173 | 4.84e-21 | 94.0 |
Msa0160900 | AT3G59470.1 | 46.226 | 106 | 55 | 2 | 74 | 179 | 70 | 173 | 4.84e-21 | 94.0 |
Msa0160900 | AT3G59470.2 | 46.226 | 106 | 55 | 2 | 74 | 179 | 82 | 185 | 6.00e-21 | 94.0 |
Msa0160900 | AT3G07500.1 | 41.905 | 105 | 60 | 1 | 74 | 178 | 33 | 136 | 3.82e-15 | 75.9 |
Msa0160900 | AT2G43280.1 | 37.500 | 128 | 71 | 4 | 74 | 199 | 22 | 142 | 1.32e-13 | 71.2 |
Msa0160900 | AT4G12850.4 | 32.540 | 126 | 78 | 3 | 74 | 199 | 11 | 129 | 3.33e-12 | 65.5 |
Msa0160900 | AT2G43280.2 | 40.659 | 91 | 50 | 3 | 89 | 177 | 2 | 90 | 2.06e-11 | 63.9 |
Msa0160900 | AT4G12850.2 | 34.951 | 103 | 63 | 2 | 74 | 176 | 11 | 109 | 5.40e-11 | 61.6 |
Find 160 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCAAATAACAAACATATTT+TGG | 0.063618 | 1_4:-34598098 | Msa0160900:CDS |
CCATTGTCAGCTTCTGTTAA+AGG | 0.115830 | 1_4:+34596254 | None:intergenic |
TCCAACTTGGCTTGAGAAAT+TGG | 0.175914 | 1_4:-34596694 | Msa0160900:CDS |
CACAGACAAACAATTGTTTA+TGG | 0.199392 | 1_4:-34597958 | Msa0160900:CDS |
ATTCATCAGCCAATACAATT+TGG | 0.204201 | 1_4:+34598334 | None:intergenic |
TTGTTTGTCTGTGGCTATTA+AGG | 0.204260 | 1_4:+34597968 | None:intergenic |
GCACAAATGATAAATGATTA+TGG | 0.212778 | 1_4:-34598069 | Msa0160900:CDS |
CACAATCCATGAAATGTTTC+TGG | 0.237682 | 1_4:+34597793 | None:intergenic |
GAAATTTGCTTCGCACTAAA+AGG | 0.249768 | 1_4:-34598224 | Msa0160900:CDS |
GGTTGGGATGTAATCAAAAT+TGG | 0.250331 | 1_4:-34597040 | Msa0160900:CDS |
GATTGTGCACTTGGCATATA+AGG | 0.257928 | 1_4:-34597777 | Msa0160900:CDS |
ACAAATTCATGAAAATCTTT+TGG | 0.298226 | 1_4:+34598300 | None:intergenic |
CTACCATTGGAGCAAGCTTC+AGG | 0.308495 | 1_4:+34599024 | None:intergenic |
ATTGTATTGGCTGATGAATC+TGG | 0.322531 | 1_4:-34598330 | Msa0160900:CDS |
CATTTCATGGATTGTGCACT+TGG | 0.334162 | 1_4:-34597786 | Msa0160900:CDS |
TAGTGCGAAGCAAATTTCTA+TGG | 0.349224 | 1_4:+34598229 | None:intergenic |
GCTTGGAATGGAAGCCAATC+TGG | 0.361798 | 1_4:-34596332 | Msa0160900:CDS |
GACATTCCTCATATTCATCT+TGG | 0.362108 | 1_4:+34597294 | None:intergenic |
ACAGACAAACAATTGTTTAT+GGG | 0.367661 | 1_4:-34597957 | Msa0160900:CDS |
TATAGTAGGAAATGTGGTTT+TGG | 0.369598 | 1_4:-34598648 | Msa0160900:CDS |
CGTCCGTTGGGAGTATTTGT+TGG | 0.371935 | 1_4:-34597991 | Msa0160900:CDS |
CGCGACGGTGGCAGTGGCGG+AGG | 0.371954 | 1_4:-34595785 | Msa0160900:CDS |
TTCATCAGCCAATACAATTT+GGG | 0.375471 | 1_4:+34598335 | None:intergenic |
GAAAGGGGAACATATTGAAT+TGG | 0.379587 | 1_4:-34597018 | Msa0160900:CDS |
TCAAATAACCATTGAAAAGA+AGG | 0.380370 | 1_4:+34597907 | None:intergenic |
GGTGAATGATATCGTGCAAC+AGG | 0.381657 | 1_4:-34598754 | Msa0160900:CDS |
TCACCATTCATCACCACCTC+TGG | 0.385515 | 1_4:-34598970 | Msa0160900:CDS |
GAACGAGAAAGGGCAGATTT+AGG | 0.389727 | 1_4:-34595862 | Msa0160900:CDS |
GCCCCGCTGTTCAGCTGACT+TGG | 0.391248 | 1_4:-34600694 | Msa0160900:CDS |
CCCACCCATTGCTTTGAGAA+AGG | 0.392844 | 1_4:+34597882 | None:intergenic |
ATGAGACTCTTCATAAACTT+TGG | 0.394637 | 1_4:+34596893 | None:intergenic |
ATTTCACTTGATCGGAAGAT+TGG | 0.399360 | 1_4:-34598465 | Msa0160900:CDS |
GTCATGCCAGAAACATTTCA+TGG | 0.400517 | 1_4:-34597799 | Msa0160900:CDS |
GACACCGCGTCTACCCTCTT+TGG | 0.402002 | 1_4:+34598557 | None:intergenic |
CACAAATGATAAATGATTAT+GGG | 0.407470 | 1_4:-34598068 | Msa0160900:CDS |
TGCCAAGTCAGCTGAACAGC+GGG | 0.415382 | 1_4:+34600692 | None:intergenic |
TTAGAAAACATGAACGAGAA+AGG | 0.427796 | 1_4:-34595873 | Msa0160900:intron |
TAATGTACCACACTTGGAAA+TGG | 0.430430 | 1_4:-34598712 | Msa0160900:CDS |
TCTTGGAGTGTAAACATTGT+CGG | 0.432000 | 1_4:+34597331 | None:intergenic |
GTCAGCTGAACAGCGGGGCC+AGG | 0.432324 | 1_4:+34600698 | None:intergenic |
TCCAAGCATGTATGCCATCA+TGG | 0.434387 | 1_4:+34596348 | None:intergenic |
ATATGGAAGCCATGCTTTGA+TGG | 0.436030 | 1_4:-34596309 | Msa0160900:CDS |
TACACCTTCAACCATTGGAT+TGG | 0.436578 | 1_4:+34598785 | None:intergenic |
AATGGAAGCCAATCTGGATA+TGG | 0.437868 | 1_4:-34596326 | Msa0160900:CDS |
TAAATGATTCACATGCCTTA+AGG | 0.440417 | 1_4:+34597747 | None:intergenic |
ATCATTTATCATTTGTGCAT+CGG | 0.444064 | 1_4:+34598074 | None:intergenic |
ACGTGTGTCGTTTCTACCAT+TGG | 0.448381 | 1_4:+34599011 | None:intergenic |
TCCAATTTCTCAAGCCAAGT+TGG | 0.453093 | 1_4:+34596693 | None:intergenic |
TATGGTGTTGGCTTCTAGAA+AGG | 0.456254 | 1_4:-34595825 | Msa0160900:CDS |
GAAACCTTTCTCAAAGCAAT+GGG | 0.457265 | 1_4:-34597886 | Msa0160900:CDS |
TGTGTACCATCATTGTTTGC+AGG | 0.460822 | 1_4:+34596518 | None:intergenic |
AGAGCCGAGATTGCTTAGAT+AGG | 0.461774 | 1_4:-34596731 | Msa0160900:CDS |
CATGGCTTCCATATCCAGAT+TGG | 0.462462 | 1_4:+34596318 | None:intergenic |
AACAGGATGTTTAGCACGTA+TGG | 0.468473 | 1_4:-34598490 | Msa0160900:CDS |
TGCATCTTGATCTGTTAGAA+TGG | 0.469730 | 1_4:+34597846 | None:intergenic |
GGAGTTTGAGTCTGAGGCCT+TGG | 0.475074 | 1_4:-34598691 | Msa0160900:CDS |
TGAAACCTTTCTCAAAGCAA+TGG | 0.476564 | 1_4:-34597887 | Msa0160900:CDS |
ATGGAAGTCTACATGAGATT+AGG | 0.477147 | 1_4:-34596235 | Msa0160900:CDS |
TAGAAAACATGAACGAGAAA+GGG | 0.477194 | 1_4:-34595872 | Msa0160900:CDS |
ATAAATGATTATGGGTACTT+TGG | 0.482723 | 1_4:-34598060 | Msa0160900:CDS |
GGAATTCCAAGATGAATATG+AGG | 0.483458 | 1_4:-34597300 | Msa0160900:CDS |
AATAAGAATTATCGTCCGTT+GGG | 0.484650 | 1_4:-34598003 | Msa0160900:CDS |
AAGAGGCGCGACGGTGGCAG+TGG | 0.486772 | 1_4:-34595791 | Msa0160900:CDS |
CCCATGATGGCATACATGCT+TGG | 0.488076 | 1_4:-34596349 | Msa0160900:CDS |
GTGGACACTGTTGATCTTGG+TGG | 0.493561 | 1_4:-34596768 | Msa0160900:CDS |
AGGCGCGACGGTGGCAGTGG+CGG | 0.494164 | 1_4:-34595788 | Msa0160900:CDS |
TTTGCTTTGAGATGCGGCGA+CGG | 0.494801 | 1_4:-34595760 | Msa0160900:CDS |
CAAATAACCATTGAAAAGAA+GGG | 0.495588 | 1_4:+34597908 | None:intergenic |
ACAAGCATCCCAAATTGTAT+TGG | 0.495869 | 1_4:-34598343 | Msa0160900:CDS |
GATGTAATCAAAATTGGAAA+GGG | 0.496181 | 1_4:-34597034 | Msa0160900:CDS |
TCACTAAGGTATGGTGAAGT+AGG | 0.507546 | 1_4:-34598195 | Msa0160900:CDS |
GCGACGGTGGCAGTGGCGGA+GGG | 0.509515 | 1_4:-34595784 | Msa0160900:CDS |
TCTATGGATGGAGAGTCAAT+TGG | 0.511024 | 1_4:-34596840 | Msa0160900:CDS |
GATGGTACACATGCTTTGAA+TGG | 0.516924 | 1_4:-34596506 | Msa0160900:CDS |
TTGTCGGCTTGTACAAGCAT+AGG | 0.519591 | 1_4:+34597347 | None:intergenic |
AGACCTGAAGCTTGCTCCAA+TGG | 0.521133 | 1_4:-34599027 | Msa0160900:CDS |
ATTGTGCACTTGGCATATAA+GGG | 0.522000 | 1_4:-34597776 | Msa0160900:CDS |
ATCATATAAACATACTCAGC+TGG | 0.522562 | 1_4:+34598393 | None:intergenic |
GATAGTAGTAGCGAATCATA+TGG | 0.523742 | 1_4:-34597201 | Msa0160900:CDS |
TTGGACAAGAGATGCAAGGT+TGG | 0.524873 | 1_4:-34597057 | Msa0160900:CDS |
CATACTCAGCTGGCAGAAGA+AGG | 0.525063 | 1_4:+34598403 | None:intergenic |
GAGGGCTTTGCTTTGAGATG+CGG | 0.525523 | 1_4:-34595766 | Msa0160900:CDS |
AAATAAGAATTATCGTCCGT+TGG | 0.526037 | 1_4:-34598004 | Msa0160900:CDS |
TGAAACTCATAAAAGAATGA+AGG | 0.528219 | 1_4:+34598135 | None:intergenic |
ATGGTGTTGGCTTCTAGAAA+GGG | 0.528676 | 1_4:-34595824 | Msa0160900:CDS |
GCTTTGAGATGCGGCGACGG+CGG | 0.528736 | 1_4:-34595757 | Msa0160900:CDS |
CACCATTCATCACCACCTCT+GGG | 0.529997 | 1_4:-34598969 | Msa0160900:CDS |
TAGTCCTATCTAAGCAATCT+CGG | 0.530700 | 1_4:+34596727 | None:intergenic |
TGGACAAGAGATGCAAGGTT+GGG | 0.530700 | 1_4:-34597056 | Msa0160900:CDS |
ACATCCAATCCAATGGTTGA+AGG | 0.531051 | 1_4:-34598789 | Msa0160900:CDS |
AATGAATATAGTAGGAAATG+TGG | 0.531225 | 1_4:-34598654 | Msa0160900:CDS |
GTATGGTTATTTCACTTGAT+CGG | 0.532614 | 1_4:-34598473 | Msa0160900:CDS |
TGCGGCGACGGCGGAAGTGA+CGG | 0.535449 | 1_4:-34595748 | Msa0160900:CDS |
GCTCGAGCAGAAACTAGAAC+AGG | 0.536024 | 1_4:-34598507 | Msa0160900:CDS |
AAATCTCCTGCAAACAATGA+TGG | 0.536617 | 1_4:-34596524 | Msa0160900:CDS |
AATGTGGACACTGTTGATCT+TGG | 0.536764 | 1_4:-34596771 | Msa0160900:CDS |
ATTATAAAATTCATATGCCA+AGG | 0.537166 | 1_4:+34598674 | None:intergenic |
TGTATGCCATCATGGGTTGC+TGG | 0.540590 | 1_4:+34596356 | None:intergenic |
TCAAGATGCAGCAATGGCTA+AGG | 0.541612 | 1_4:-34597833 | Msa0160900:CDS |
ACGTGATTACTTAACAAAAG+AGG | 0.543276 | 1_4:-34598529 | Msa0160900:CDS |
CTAAAAGGAACCACTCACTA+AGG | 0.543419 | 1_4:-34598209 | Msa0160900:CDS |
CAATCTCCAGCAACCCATGA+TGG | 0.544924 | 1_4:-34596362 | Msa0160900:CDS |
TGCCCAGAGGTGGTGATGAA+TGG | 0.545146 | 1_4:+34598967 | None:intergenic |
GTACACATGCTTTGAATGGA+AGG | 0.545764 | 1_4:-34596502 | Msa0160900:CDS |
CAGACAAACAATTGTTTATG+GGG | 0.545894 | 1_4:-34597956 | Msa0160900:CDS |
AGCAATATATACTAAAACGT+TGG | 0.545983 | 1_4:-34597076 | Msa0160900:CDS |
ATAATGTTTCTAAAGACTCA+TGG | 0.548211 | 1_4:-34597621 | Msa0160900:CDS |
CCAAGCATGTATGCCATCAT+GGG | 0.548509 | 1_4:+34596349 | None:intergenic |
GGAAATGGAGTTTGAGTCTG+AGG | 0.549669 | 1_4:-34598697 | Msa0160900:CDS |
ACCTTTCTCAAAGCAATGGG+TGG | 0.552305 | 1_4:-34597883 | Msa0160900:CDS |
GGATGTAATCAAAATTGGAA+AGG | 0.552421 | 1_4:-34597035 | Msa0160900:CDS |
TCGGAAGATTGGAAAATACA+AGG | 0.556421 | 1_4:-34598454 | Msa0160900:CDS |
TCTTAGTAATGTACCACACT+TGG | 0.558175 | 1_4:-34598718 | Msa0160900:CDS |
TGGACACTGTTGATCTTGGT+GGG | 0.560318 | 1_4:-34596767 | Msa0160900:CDS |
GCTGTTCAGCTGACTTGGCA+TGG | 0.563167 | 1_4:-34600689 | Msa0160900:intron |
TTGCTCAATTTAACTGCTCG+AGG | 0.564353 | 1_4:+34596954 | None:intergenic |
TAGGTCGTCACAGTAACATA+TGG | 0.564923 | 1_4:-34595843 | Msa0160900:CDS |
ATCTTACCGGTGCCCAGAGG+TGG | 0.565589 | 1_4:+34598957 | None:intergenic |
ATATAAGGGAAAATGCCTTA+AGG | 0.566279 | 1_4:-34597762 | Msa0160900:CDS |
AACAGATCAAGATGCAGCAA+TGG | 0.573110 | 1_4:-34597839 | Msa0160900:CDS |
ATTCTTATTTGTCTTGAATG+TGG | 0.574010 | 1_4:+34598017 | None:intergenic |
AGGAACCACTCACTAAGGTA+TGG | 0.576328 | 1_4:-34598204 | Msa0160900:CDS |
GTGCGAAAGACTTTCACTGC+AGG | 0.578283 | 1_4:-34597553 | Msa0160900:intron |
TGTCGAAAGTTTGAGACACA+TGG | 0.578537 | 1_4:-34597158 | Msa0160900:CDS |
TTTGAGATGCCATCAAAGCA+TGG | 0.583887 | 1_4:+34596300 | None:intergenic |
CATAAACAATTGTTTGTCTG+TGG | 0.584673 | 1_4:+34597959 | None:intergenic |
TGTCGGCTTGTACAAGCATA+GGG | 0.586633 | 1_4:+34597348 | None:intergenic |
AAAGAGTTGTCAACGGAAAG+CGG | 0.589356 | 1_4:-34597436 | Msa0160900:intron |
AAAATTTGTGTGCTCCAAAG+AGG | 0.589431 | 1_4:-34598571 | Msa0160900:CDS |
TCATCACCACCTCTGGGCAC+CGG | 0.597509 | 1_4:-34598963 | Msa0160900:intron |
TGTTGGCTTCTAGAAAGGGT+AGG | 0.602571 | 1_4:-34595820 | Msa0160900:CDS |
GATGGCATACATGCTTGGAA+TGG | 0.609086 | 1_4:-34596344 | Msa0160900:CDS |
CACTTTGAAAGAGTTGTCAA+CGG | 0.610932 | 1_4:-34597443 | Msa0160900:intron |
CCTTTAACAGAAGCTGACAA+TGG | 0.612454 | 1_4:-34596254 | Msa0160900:CDS |
CCTTTCTCAAAGCAATGGGT+GGG | 0.612770 | 1_4:-34597882 | Msa0160900:CDS |
GTCACAGTAACATATGGTGT+TGG | 0.612986 | 1_4:-34595837 | Msa0160900:CDS |
ATGTAATCAAAATTGGAAAG+GGG | 0.613707 | 1_4:-34597033 | Msa0160900:CDS |
ATGCATTGATCTACACGAAG+AGG | 0.614015 | 1_4:-34597686 | Msa0160900:CDS |
GAATATTACATCCAATCCAA+TGG | 0.614280 | 1_4:-34598796 | Msa0160900:CDS |
AAATTTGTGTGCTCCAAAGA+GGG | 0.614397 | 1_4:-34598570 | Msa0160900:CDS |
GAATTTGTGTCAAAACAAGC+TGG | 0.617409 | 1_4:-34598285 | Msa0160900:CDS |
CAAGGTTATTGACTTTGTAG+CGG | 0.620198 | 1_4:-34598436 | Msa0160900:CDS |
CTTCACCATACCTTAGTGAG+TGG | 0.628280 | 1_4:+34598199 | None:intergenic |
AACGTTGGACAAGAGATGCA+AGG | 0.629157 | 1_4:-34597061 | Msa0160900:CDS |
AGGTTTGCAAAGAGGCGCGA+CGG | 0.630884 | 1_4:-34595800 | Msa0160900:CDS |
TACAAATTATGATAACAGCA+AGG | 0.637062 | 1_4:-34597228 | Msa0160900:CDS |
GAAAGGGTAGGTTTGCAAAG+AGG | 0.637487 | 1_4:-34595808 | Msa0160900:CDS |
GCTGGTGGAATAAACACTGT+TGG | 0.638577 | 1_4:-34598267 | Msa0160900:CDS |
TTTGCAAAGAGGCGCGACGG+TGG | 0.639189 | 1_4:-34595797 | Msa0160900:CDS |
TCAAACTCCATTTCCAAGTG+TGG | 0.642402 | 1_4:+34598705 | None:intergenic |
TTTGTGTCAAAACAAGCTGG+TGG | 0.647892 | 1_4:-34598282 | Msa0160900:CDS |
AGGCCAACAAATACTCCCAA+CGG | 0.650363 | 1_4:+34597988 | None:intergenic |
TGCTCCAAAGAGGGTAGACG+CGG | 0.660484 | 1_4:-34598561 | Msa0160900:CDS |
GTGAATGATATCGTGCAACA+GGG | 0.667513 | 1_4:-34598753 | Msa0160900:CDS |
ATGCCAAGTCAGCTGAACAG+CGG | 0.668455 | 1_4:+34600691 | None:intergenic |
GGCGACGGCGGAAGTGACGG+AGG | 0.681192 | 1_4:-34595745 | Msa0160900:CDS |
GGACACTGTTGATCTTGGTG+GGG | 0.681245 | 1_4:-34596766 | Msa0160900:CDS |
ATTATGATAACAGCAAGGAG+CGG | 0.694152 | 1_4:-34597223 | Msa0160900:CDS |
GCCAAGTCAGCTGAACAGCG+GGG | 0.718283 | 1_4:+34600693 | None:intergenic |
AAAATCTTACCGGTGCCCAG+AGG | 0.742952 | 1_4:+34598954 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATATATATATTTTTTTTA+AGG | + | chr1_4:34596818-34596837 | None:intergenic | 0.0% |
!!! | ATTTTTATTTTTTAATTACG+TGG | + | chr1_4:34595840-34595859 | None:intergenic | 10.0% |
!!! | TATAATTTTCAGATATTTTT+CGG | + | chr1_4:34596044-34596063 | None:intergenic | 10.0% |
!! | CTGAAAATTATAAAAAATTT+CGG | - | chr1_4:34596052-34596071 | Msa0160900:intron | 10.0% |
!!! | TTATTTTCAGAAAATATAAT+TGG | + | chr1_4:34596153-34596172 | None:intergenic | 10.0% |
!!! | AAATTTATTTTCAGATTTTT+CGG | - | chr1_4:34596361-34596380 | Msa0160900:CDS | 10.0% |
!!! | AAATTTATTTTCAGATTTTT+CGG | - | chr1_4:34596361-34596380 | Msa0160900:CDS | 10.0% |
!!! | AAATTTATTTTCAGATTTTT+CGG | - | chr1_4:34596361-34596380 | Msa0160900:CDS | 10.0% |
!!! | AAAAAAAATTTGTTTGAAAA+TGG | + | chr1_4:34596711-34596730 | None:intergenic | 10.0% |
!!! | AATTTTATAATGAATATAGT+AGG | - | chr1_4:34597780-34597799 | Msa0160900:CDS | 10.0% |
!!! | AAATTTCTTTTCAGATTTTT+CGG | + | chr1_4:34595962-34595981 | None:intergenic | 15.0% |
!!! | TTACAATTTTCAGATTTTTT+TGG | - | chr1_4:34596493-34596512 | Msa0160900:CDS | 15.0% |
!!! | TCAAACAAATTTTTTTTTAC+AGG | - | chr1_4:34596714-34596733 | Msa0160900:CDS | 15.0% |
!!! | CAAACAAATTTTTTTTTACA+GGG | - | chr1_4:34596715-34596734 | Msa0160900:CDS | 15.0% |
!!! | AATTCAAACTTTTTTTTTAC+AGG | - | chr1_4:34596742-34596761 | Msa0160900:CDS | 15.0% |
!!! | ATTCAAACTTTTTTTTTACA+GGG | - | chr1_4:34596743-34596762 | Msa0160900:CDS | 15.0% |
!!! | TATGCTTTTTTTTTATGATA+TGG | + | chr1_4:34596952-34596971 | None:intergenic | 15.0% |
!! | TGTTTAAAAAATTTGAAAGA+AGG | - | chr1_4:34599179-34599198 | Msa0160900:intron | 15.0% |
!! | GTTTAAAAAATTTGAAAGAA+GGG | - | chr1_4:34599180-34599199 | Msa0160900:intron | 15.0% |
!! | AACAGTGAATTTAGAAATAT+AGG | - | chr1_4:34596997-34597016 | Msa0160900:CDS | 20.0% |
!!! | CATGAATATTTGAAAGTATT+TGG | - | chr1_4:34597542-34597561 | Msa0160900:intron | 20.0% |
!! | TATTCACATTATCTAGAAAA+TGG | + | chr1_4:34597631-34597650 | None:intergenic | 20.0% |
!! | ATTATAAAATTCATATGCCA+AGG | + | chr1_4:34597771-34597790 | None:intergenic | 20.0% |
!!! | ACAAATTCATGAAAATCTTT+TGG | + | chr1_4:34598145-34598164 | None:intergenic | 20.0% |
!!! | AGCAAATAACAAACATATTT+TGG | - | chr1_4:34598344-34598363 | Msa0160900:CDS | 20.0% |
!!! | GCAAATAACAAACATATTTT+GGG | - | chr1_4:34598345-34598364 | Msa0160900:CDS | 20.0% |
!! | CACAAATGATAAATGATTAT+GGG | - | chr1_4:34598374-34598393 | Msa0160900:CDS | 20.0% |
!!! | ATCTTTTTCATTTTCAATCT+TGG | + | chr1_4:34599074-34599093 | None:intergenic | 20.0% |
!! | ATCAATTGCAAATGAAAAAA+AGG | - | chr1_4:34599643-34599662 | Msa0160900:intron | 20.0% |
!!! | ACATTACTACTTTTTCTATT+AGG | - | chr1_4:34600288-34600307 | Msa0160900:intron | 20.0% |
!!! | CATTACTACTTTTTCTATTA+GGG | - | chr1_4:34600289-34600308 | Msa0160900:intron | 20.0% |
!!! | ATTACTACTTTTTCTATTAG+GGG | - | chr1_4:34600290-34600309 | Msa0160900:intron | 20.0% |
!!! | CACTTTGTATTTTATTTTAC+TGG | + | chr1_4:34600445-34600464 | None:intergenic | 20.0% |
!! | AATTGTTCATATCAATTTAG+AGG | + | chr1_4:34600472-34600491 | None:intergenic | 20.0% |
! | AAAATGTCTTGGATCAAATT+TGG | + | chr1_4:34596858-34596877 | None:intergenic | 25.0% |
!!! | ATCCAAGACATTTTTTAAGT+GGG | - | chr1_4:34596864-34596883 | Msa0160900:CDS | 25.0% |
! | AGGAATTAGAATCACAAATA+AGG | - | chr1_4:34597017-34597036 | Msa0160900:CDS | 25.0% |
! | GGAATTAGAATCACAAATAA+GGG | - | chr1_4:34597018-34597037 | Msa0160900:CDS | 25.0% |
! | GAATTAGAATCACAAATAAG+GGG | - | chr1_4:34597019-34597038 | Msa0160900:CDS | 25.0% |
! | GATCTCAATTTCTTAAGAAA+TGG | + | chr1_4:34597057-34597076 | None:intergenic | 25.0% |
! | AGAAGAGAATATGAAGAAAA+CGG | - | chr1_4:34597184-34597203 | Msa0160900:CDS | 25.0% |
! | AATGAATATAGTAGGAAATG+TGG | - | chr1_4:34597788-34597807 | Msa0160900:CDS | 25.0% |
!!! | TTTTATTTGCATATTCTCGA+CGG | + | chr1_4:34597823-34597842 | None:intergenic | 25.0% |
! | GCAAATAAAAGCAAAAAAGA+TGG | - | chr1_4:34597833-34597852 | Msa0160900:CDS | 25.0% |
! | TGAAACTCATAAAAGAATGA+AGG | + | chr1_4:34598310-34598329 | None:intergenic | 25.0% |
!! | ATTCTTTTATGAGTTTCAGA+TGG | - | chr1_4:34598312-34598331 | Msa0160900:CDS | 25.0% |
! | ATCATTTATCATTTGTGCAT+CGG | + | chr1_4:34598371-34598390 | None:intergenic | 25.0% |
! | GCACAAATGATAAATGATTA+TGG | - | chr1_4:34598373-34598392 | Msa0160900:CDS | 25.0% |
! | ATAAATGATTATGGGTACTT+TGG | - | chr1_4:34598382-34598401 | Msa0160900:CDS | 25.0% |
!! | ATTCTTATTTGTCTTGAATG+TGG | + | chr1_4:34598428-34598447 | None:intergenic | 25.0% |
! | ACAGACAAACAATTGTTTAT+GGG | - | chr1_4:34598485-34598504 | Msa0160900:CDS | 25.0% |
! | CAAATAACCATTGAAAAGAA+GGG | + | chr1_4:34598537-34598556 | None:intergenic | 25.0% |
! | TCAAATAACCATTGAAAAGA+AGG | + | chr1_4:34598538-34598557 | None:intergenic | 25.0% |
!! | ATAATGTTTCTAAAGACTCA+TGG | - | chr1_4:34598821-34598840 | Msa0160900:intron | 25.0% |
! | CCTTGAATCGAAAAATATTA+TGG | + | chr1_4:34598849-34598868 | None:intergenic | 25.0% |
!!! | CCATAATATTTTTCGATTCA+AGG | - | chr1_4:34598846-34598865 | Msa0160900:intron | 25.0% |
!!! | TTTTTCGATTCAAGGAAAAA+TGG | - | chr1_4:34598854-34598873 | Msa0160900:intron | 25.0% |
!! | TTTTCGATTCAAGGAAAAAT+GGG | - | chr1_4:34598855-34598874 | Msa0160900:intron | 25.0% |
! | TACAAATTATGATAACAGCA+AGG | - | chr1_4:34599214-34599233 | Msa0160900:intron | 25.0% |
! | AGCAATATATACTAAAACGT+TGG | - | chr1_4:34599366-34599385 | Msa0160900:intron | 25.0% |
! | GATGTAATCAAAATTGGAAA+GGG | - | chr1_4:34599408-34599427 | Msa0160900:intron | 25.0% |
! | ATGTAATCAAAATTGGAAAG+GGG | - | chr1_4:34599409-34599428 | Msa0160900:intron | 25.0% |
! | TGGATAAAAAGAGACAAAAA+AGG | - | chr1_4:34599768-34599787 | Msa0160900:intron | 25.0% |
! | GACTAAGAGAAAGAAAAAAT+TGG | - | chr1_4:34599799-34599818 | Msa0160900:intron | 25.0% |
!!! | TGTTACTTTTACTACTATGT+AGG | - | chr1_4:34599893-34599912 | Msa0160900:intron | 25.0% |
! | AAGGAAGAGAAAGAAAAAAT+TGG | - | chr1_4:34599959-34599978 | Msa0160900:intron | 25.0% |
! | CACATGTTAAAAAGAAAGTA+TGG | + | chr1_4:34599834-34599853 | None:intergenic | 25.0% |
!! | TGTTACTTCTACTATTATGT+AGG | - | chr1_4:34600055-34600074 | Msa0160900:intron | 25.0% |
! | TGATCAACAAAATGCAATAT+AGG | + | chr1_4:34600317-34600336 | None:intergenic | 25.0% |
!!! | CATTTTGTTGATCACTTTTT+GGG | - | chr1_4:34600323-34600342 | Msa0160900:intron | 25.0% |
TCAAAACACGTCTATATTAC+AGG | - | chr1_4:34596773-34596792 | Msa0160900:CDS | 30.0% | |
CAAAACACGTCTATATTACA+GGG | - | chr1_4:34596774-34596793 | Msa0160900:CDS | 30.0% | |
!!! | GATCCAAGACATTTTTTAAG+TGG | - | chr1_4:34596863-34596882 | Msa0160900:CDS | 30.0% |
AACCCACTTAAAAAATGTCT+TGG | + | chr1_4:34596869-34596888 | None:intergenic | 30.0% | |
CAATTTCTTAAGAAATGGAG+AGG | + | chr1_4:34597052-34597071 | None:intergenic | 30.0% | |
TTAAAATGAATCTCAGCCAT+TGG | + | chr1_4:34597125-34597144 | None:intergenic | 30.0% | |
AAAGTGAAACCAAATGATGA+TGG | + | chr1_4:34597306-34597325 | None:intergenic | 30.0% | |
GACAAAGAACAAAATCTTAC+CGG | + | chr1_4:34597501-34597520 | None:intergenic | 30.0% | |
GAATATTACATCCAATCCAA+TGG | - | chr1_4:34597646-34597665 | Msa0160900:CDS | 30.0% | |
! | TATAGTAGGAAATGTGGTTT+TGG | - | chr1_4:34597794-34597813 | Msa0160900:CDS | 30.0% |
ACGTGATTACTTAACAAAAG+AGG | - | chr1_4:34597913-34597932 | Msa0160900:CDS | 30.0% | |
! | GTATGGTTATTTCACTTGAT+CGG | - | chr1_4:34597969-34597988 | Msa0160900:CDS | 30.0% |
ATCATATAAACATACTCAGC+TGG | + | chr1_4:34598052-34598071 | None:intergenic | 30.0% | |
TTCATCAGCCAATACAATTT+GGG | + | chr1_4:34598110-34598129 | None:intergenic | 30.0% | |
ATTCATCAGCCAATACAATT+TGG | + | chr1_4:34598111-34598130 | None:intergenic | 30.0% | |
AAATAAGAATTATCGTCCGT+TGG | - | chr1_4:34598438-34598457 | Msa0160900:CDS | 30.0% | |
AATAAGAATTATCGTCCGTT+GGG | - | chr1_4:34598439-34598458 | Msa0160900:CDS | 30.0% | |
CATAAACAATTGTTTGTCTG+TGG | + | chr1_4:34598486-34598505 | None:intergenic | 30.0% | |
CACAGACAAACAATTGTTTA+TGG | - | chr1_4:34598484-34598503 | Msa0160900:CDS | 30.0% | |
CAGACAAACAATTGTTTATG+GGG | - | chr1_4:34598486-34598505 | Msa0160900:CDS | 30.0% | |
! | AAACAATCCCTTCTTTTCAA+TGG | - | chr1_4:34598527-34598546 | Msa0160900:CDS | 30.0% |
! | TGATCTGTTAGAATGGTTTT+AGG | + | chr1_4:34598592-34598611 | None:intergenic | 30.0% |
ATATAAGGGAAAATGCCTTA+AGG | - | chr1_4:34598680-34598699 | Msa0160900:CDS | 30.0% | |
TAAATGATTCACATGCCTTA+AGG | + | chr1_4:34598698-34598717 | None:intergenic | 30.0% | |
!!! | AAGAAGAATTTTTGAGTGGA+TGG | - | chr1_4:34598779-34598798 | Msa0160900:CDS | 30.0% |
!!! | AGAAGAATTTTTGAGTGGAT+GGG | - | chr1_4:34598780-34598799 | Msa0160900:CDS | 30.0% |
! | TTACACTCCAAGAATTTTTG+AGG | - | chr1_4:34599121-34599140 | Msa0160900:intron | 30.0% |
TGGAATTCCTCAAAAATTCT+TGG | + | chr1_4:34599131-34599150 | None:intergenic | 30.0% | |
!! | CGTTTTAGTATATATTGCTG+AGG | + | chr1_4:34599365-34599384 | None:intergenic | 30.0% |
GGATGTAATCAAAATTGGAA+AGG | - | chr1_4:34599407-34599426 | Msa0160900:intron | 30.0% | |
ATGAGACTCTTCATAAACTT+TGG | + | chr1_4:34599552-34599571 | None:intergenic | 30.0% | |
! | TATGCTGACTAAAAAGTCTA+TGG | - | chr1_4:34599586-34599605 | Msa0160900:intron | 30.0% |
TGAAAAAAAGGATCAGAATG+TGG | - | chr1_4:34599655-34599674 | Msa0160900:intron | 30.0% | |
GCTTAGATAGGACTAAAAAA+AGG | - | chr1_4:34599723-34599742 | Msa0160900:intron | 30.0% | |
GATAGCAGTACTAAAATTCT+AGG | + | chr1_4:34599857-34599876 | None:intergenic | 30.0% | |
TCCAAATGTCAAATGAGATT+AGG | - | chr1_4:34600231-34600250 | Msa0160900:intron | 30.0% | |
TCCTAATCTCATTTGACATT+TGG | + | chr1_4:34600235-34600254 | None:intergenic | 30.0% | |
AGATTAGGATCTAACACAAT+TGG | - | chr1_4:34600246-34600265 | Msa0160900:intron | 30.0% | |
GATTAGGATCTAACACAATT+GGG | - | chr1_4:34600247-34600266 | Msa0160900:intron | 30.0% | |
!! | GCATTTTGTTGATCACTTTT+TGG | - | chr1_4:34600322-34600341 | Msa0160900:intron | 30.0% |
TCATAATTTGAGCAAGACTT+TGG | + | chr1_4:34600387-34600406 | None:intergenic | 30.0% | |
ACAATTGAACATGTATGCAA+AGG | - | chr1_4:34600486-34600505 | Msa0160900:intron | 30.0% | |
ATTGAAGAATTAGAATGCCA+AGG | - | chr1_4:34600520-34600539 | Msa0160900:intron | 30.0% | |
TTGAAGAATTAGAATGCCAA+GGG | - | chr1_4:34600521-34600540 | Msa0160900:intron | 30.0% | |
AAAAGACAACAAAGACATGA+AGG | + | chr1_4:34600551-34600570 | None:intergenic | 30.0% | |
TTAGAAAACATGAACGAGAA+AGG | - | chr1_4:34600569-34600588 | Msa0160900:intron | 30.0% | |
TAGAAAACATGAACGAGAAA+GGG | - | chr1_4:34600570-34600589 | Msa0160900:intron | 30.0% | |
ATTTGTTTGAAAATGGTCCC+TGG | + | chr1_4:34596704-34596723 | None:intergenic | 35.0% | |
!! | AACTAAGTTGATGACATGGA+AGG | + | chr1_4:34596908-34596927 | None:intergenic | 35.0% |
TATGGTCTGAACCAATACTA+TGG | - | chr1_4:34597244-34597263 | Msa0160900:CDS | 35.0% | |
TGTGACTTACCATCATCATT+TGG | - | chr1_4:34597294-34597313 | Msa0160900:CDS | 35.0% | |
! | TTTTCTACACCTTCAACCAT+TGG | + | chr1_4:34597665-34597684 | None:intergenic | 35.0% |
! | GGTTGAAGGTGTAGAAAAAT+TGG | - | chr1_4:34597667-34597686 | Msa0160900:CDS | 35.0% |
TCTTAGTAATGTACCACACT+TGG | - | chr1_4:34597724-34597743 | Msa0160900:CDS | 35.0% | |
TAATGTACCACACTTGGAAA+TGG | - | chr1_4:34597730-34597749 | Msa0160900:CDS | 35.0% | |
AAAATTTGTGTGCTCCAAAG+AGG | - | chr1_4:34597871-34597890 | Msa0160900:CDS | 35.0% | |
AAATTTGTGTGCTCCAAAGA+GGG | - | chr1_4:34597872-34597891 | Msa0160900:CDS | 35.0% | |
ATTTCACTTGATCGGAAGAT+TGG | - | chr1_4:34597977-34597996 | Msa0160900:CDS | 35.0% | |
TCGGAAGATTGGAAAATACA+AGG | - | chr1_4:34597988-34598007 | Msa0160900:CDS | 35.0% | |
!! | CAAGGTTATTGACTTTGTAG+CGG | - | chr1_4:34598006-34598025 | Msa0160900:CDS | 35.0% |
ACAAGCATCCCAAATTGTAT+TGG | - | chr1_4:34598099-34598118 | Msa0160900:CDS | 35.0% | |
!! | ATTGTATTGGCTGATGAATC+TGG | - | chr1_4:34598112-34598131 | Msa0160900:CDS | 35.0% |
GAATTTGTGTCAAAACAAGC+TGG | - | chr1_4:34598157-34598176 | Msa0160900:CDS | 35.0% | |
TAGTGCGAAGCAAATTTCTA+TGG | + | chr1_4:34598216-34598235 | None:intergenic | 35.0% | |
! | GAAATTTGCTTCGCACTAAA+AGG | - | chr1_4:34598218-34598237 | Msa0160900:CDS | 35.0% |
TTGTTTGTCTGTGGCTATTA+AGG | + | chr1_4:34598477-34598496 | None:intergenic | 35.0% | |
TGAAACCTTTCTCAAAGCAA+TGG | - | chr1_4:34598555-34598574 | Msa0160900:CDS | 35.0% | |
GAAACCTTTCTCAAAGCAAT+GGG | - | chr1_4:34598556-34598575 | Msa0160900:CDS | 35.0% | |
TGCATCTTGATCTGTTAGAA+TGG | + | chr1_4:34598599-34598618 | None:intergenic | 35.0% | |
CACAATCCATGAAATGTTTC+TGG | + | chr1_4:34598652-34598671 | None:intergenic | 35.0% | |
ATTGTGCACTTGGCATATAA+GGG | - | chr1_4:34598666-34598685 | Msa0160900:CDS | 35.0% | |
!! | GAGGAAGAAGAATTTTTGAG+TGG | - | chr1_4:34598775-34598794 | Msa0160900:CDS | 35.0% |
ATTCAAGGAAAAATGGGCAT+GGG | - | chr1_4:34598861-34598880 | Msa0160900:intron | 35.0% | |
! | CACTTTGAAAGAGTTGTCAA+CGG | - | chr1_4:34598999-34599018 | Msa0160900:CDS | 35.0% |
TCTTGGAGTGTAAACATTGT+CGG | + | chr1_4:34599114-34599133 | None:intergenic | 35.0% | |
GGAATTCCAAGATGAATATG+AGG | - | chr1_4:34599142-34599161 | Msa0160900:intron | 35.0% | |
GACATTCCTCATATTCATCT+TGG | + | chr1_4:34599151-34599170 | None:intergenic | 35.0% | |
ATTATGATAACAGCAAGGAG+CGG | - | chr1_4:34599219-34599238 | Msa0160900:intron | 35.0% | |
GATAGTAGTAGCGAATCATA+TGG | - | chr1_4:34599241-34599260 | Msa0160900:intron | 35.0% | |
GGTTGGGATGTAATCAAAAT+TGG | - | chr1_4:34599402-34599421 | Msa0160900:intron | 35.0% | |
GAAAGGGGAACATATTGAAT+TGG | - | chr1_4:34599424-34599443 | Msa0160900:intron | 35.0% | |
CTGACTAAAAAGTCTATGGA+TGG | - | chr1_4:34599590-34599609 | Msa0160900:intron | 35.0% | |
TAGTCCTATCTAAGCAATCT+CGG | + | chr1_4:34599718-34599737 | None:intergenic | 35.0% | |
!! | CTAAAAAAAGGCATCCAACT+TGG | - | chr1_4:34599735-34599754 | Msa0160900:intron | 35.0% |
AAATCTCCTGCAAACAATGA+TGG | - | chr1_4:34599918-34599937 | Msa0160900:intron | 35.0% | |
ATGGAAGTCTACATGAGATT+AGG | - | chr1_4:34600207-34600226 | Msa0160900:intron | 35.0% | |
!! | TAAGTTGATGACATGGAAGG+AGG | + | chr1_4:34596905-34596924 | None:intergenic | 40.0% |
!! | TGGCAACTAAGTTGATGACA+TGG | + | chr1_4:34596912-34596931 | None:intergenic | 40.0% |
! | AAAAGCATAAACTGCGCAGT+TGG | - | chr1_4:34596963-34596982 | Msa0160900:CDS | 40.0% |
GTGGCACATTAAAACTCCAA+TGG | - | chr1_4:34597106-34597125 | Msa0160900:CDS | 40.0% | |
!! | TATTGGTTCAGACCATAGAG+AGG | + | chr1_4:34597241-34597260 | None:intergenic | 40.0% |
AAGTCACAGTAATGAGGAGA+AGG | + | chr1_4:34597282-34597301 | None:intergenic | 40.0% | |
GATGGTAAGTCACAGTAATG+AGG | + | chr1_4:34597288-34597307 | None:intergenic | 40.0% | |
AAATTCAGAATCGACGTCGT+CGG | + | chr1_4:34597369-34597388 | None:intergenic | 40.0% | |
GTCTACAATACAGTGGAACA+AGG | + | chr1_4:34597399-34597418 | None:intergenic | 40.0% | |
ACATCCAATCCAATGGTTGA+AGG | - | chr1_4:34597653-34597672 | Msa0160900:CDS | 40.0% | |
TACACCTTCAACCATTGGAT+TGG | + | chr1_4:34597660-34597679 | None:intergenic | 40.0% | |
GTGAATGATATCGTGCAACA+GGG | - | chr1_4:34597689-34597708 | Msa0160900:CDS | 40.0% | |
TCAAACTCCATTTCCAAGTG+TGG | + | chr1_4:34597740-34597759 | None:intergenic | 40.0% | |
AACAGGATGTTTAGCACGTA+TGG | - | chr1_4:34597952-34597971 | Msa0160900:CDS | 40.0% | |
TTTGTGTCAAAACAAGCTGG+TGG | - | chr1_4:34598160-34598179 | Msa0160900:CDS | 40.0% | |
CTAAAAGGAACCACTCACTA+AGG | - | chr1_4:34598233-34598252 | Msa0160900:CDS | 40.0% | |
TCACTAAGGTATGGTGAAGT+AGG | - | chr1_4:34598247-34598266 | Msa0160900:CDS | 40.0% | |
AACAGATCAAGATGCAGCAA+TGG | - | chr1_4:34598603-34598622 | Msa0160900:CDS | 40.0% | |
GTCATGCCAGAAACATTTCA+TGG | - | chr1_4:34598643-34598662 | Msa0160900:CDS | 40.0% | |
! | CATTTCATGGATTGTGCACT+TGG | - | chr1_4:34598656-34598675 | Msa0160900:CDS | 40.0% |
GATTGTGCACTTGGCATATA+AGG | - | chr1_4:34598665-34598684 | Msa0160900:CDS | 40.0% | |
! | ATGCATTGATCTACACGAAG+AGG | - | chr1_4:34598756-34598775 | Msa0160900:CDS | 40.0% |
!!! | AGAATTTTTGAGTGGATGGG+AGG | - | chr1_4:34598783-34598802 | Msa0160900:CDS | 40.0% |
GATTCAAGGAAAAATGGGCA+TGG | - | chr1_4:34598860-34598879 | Msa0160900:intron | 40.0% | |
AAAGAGTTGTCAACGGAAAG+CGG | - | chr1_4:34599006-34599025 | Msa0160900:CDS | 40.0% | |
! | TGTCGAAAGTTTGAGACACA+TGG | - | chr1_4:34599284-34599303 | Msa0160900:intron | 40.0% |
TTGCTCAATTTAACTGCTCG+AGG | + | chr1_4:34599491-34599510 | None:intergenic | 40.0% | |
TCTATGGATGGAGAGTCAAT+TGG | - | chr1_4:34599602-34599621 | Msa0160900:intron | 40.0% | |
AATGTGGACACTGTTGATCT+TGG | - | chr1_4:34599671-34599690 | Msa0160900:intron | 40.0% | |
! | TCCAACTTGGCTTGAGAAAT+TGG | - | chr1_4:34599748-34599767 | Msa0160900:intron | 40.0% |
TCCAATTTCTCAAGCCAAGT+TGG | + | chr1_4:34599752-34599771 | None:intergenic | 40.0% | |
TGTGTACCATCATTGTTTGC+AGG | + | chr1_4:34599927-34599946 | None:intergenic | 40.0% | |
! | GATGGTACACATGCTTTGAA+TGG | - | chr1_4:34599936-34599955 | Msa0160900:intron | 40.0% |
! | GTACACATGCTTTGAATGGA+AGG | - | chr1_4:34599940-34599959 | Msa0160900:intron | 40.0% |
AATGGAAGCCAATCTGGATA+TGG | - | chr1_4:34600116-34600135 | Msa0160900:intron | 40.0% | |
ATATGGAAGCCATGCTTTGA+TGG | - | chr1_4:34600133-34600152 | Msa0160900:intron | 40.0% | |
! | TTTGAGATGCCATCAAAGCA+TGG | + | chr1_4:34600145-34600164 | None:intergenic | 40.0% |
CCATTGTCAGCTTCTGTTAA+AGG | + | chr1_4:34600191-34600210 | None:intergenic | 40.0% | |
CCTTTAACAGAAGCTGACAA+TGG | - | chr1_4:34600188-34600207 | Msa0160900:intron | 40.0% | |
! | AAGACATGAAGGTTTTCCCT+TGG | + | chr1_4:34600540-34600559 | None:intergenic | 40.0% |
TAGGTCGTCACAGTAACATA+TGG | - | chr1_4:34600599-34600618 | Msa0160900:intron | 40.0% | |
GTCACAGTAACATATGGTGT+TGG | - | chr1_4:34600605-34600624 | Msa0160900:intron | 40.0% | |
!! | TATGGTGTTGGCTTCTAGAA+AGG | - | chr1_4:34600617-34600636 | Msa0160900:intron | 40.0% |
!! | ATGGTGTTGGCTTCTAGAAA+GGG | - | chr1_4:34600618-34600637 | Msa0160900:intron | 40.0% |
!!! | CAACTGACTTGGCATGGTTT+TGG | + | chr1_4:34596671-34596690 | None:intergenic | 45.0% |
!! | ACTGTTCAACTGACTTGGCA+TGG | + | chr1_4:34596677-34596696 | None:intergenic | 45.0% |
ATGCCAAGTCAGTTGAACAG+TGG | - | chr1_4:34596676-34596695 | Msa0160900:CDS | 45.0% | |
TGCCAAGTCAGTTGAACAGT+GGG | - | chr1_4:34596677-34596696 | Msa0160900:CDS | 45.0% | |
TGGCATGTGAGATGCTTATG+TGG | + | chr1_4:34596932-34596951 | None:intergenic | 45.0% | |
TTGAGTATGAGCTTGACACG+TGG | - | chr1_4:34597087-34597106 | Msa0160900:CDS | 45.0% | |
TGAAGGAAGTGAAACGACGA+AGG | + | chr1_4:34597218-34597237 | None:intergenic | 45.0% | |
TCACTTCCTTCACCTCTCTA+TGG | - | chr1_4:34597226-34597245 | Msa0160900:CDS | 45.0% | |
TTCAGACCATAGAGAGGTGA+AGG | + | chr1_4:34597235-34597254 | None:intergenic | 45.0% | |
GGTTGGGAACACCATAGTAT+TGG | + | chr1_4:34597258-34597277 | None:intergenic | 45.0% | |
GTAATGAGGAGAAGGAGGTT+GGG | + | chr1_4:34597274-34597293 | None:intergenic | 45.0% | |
AGTAATGAGGAGAAGGAGGT+TGG | + | chr1_4:34597275-34597294 | None:intergenic | 45.0% | |
TCACAGTAATGAGGAGAAGG+AGG | + | chr1_4:34597279-34597298 | None:intergenic | 45.0% | |
GCTTCAGGTCTACAATACAG+TGG | + | chr1_4:34597406-34597425 | None:intergenic | 45.0% | |
!! | ACGTGTGTCGTTTCTACCAT+TGG | + | chr1_4:34597434-34597453 | None:intergenic | 45.0% |
GGTGAATGATATCGTGCAAC+AGG | - | chr1_4:34597688-34597707 | Msa0160900:CDS | 45.0% | |
GGAAATGGAGTTTGAGTCTG+AGG | - | chr1_4:34597745-34597764 | Msa0160900:CDS | 45.0% | |
GCTGGTGGAATAAACACTGT+TGG | - | chr1_4:34598175-34598194 | Msa0160900:CDS | 45.0% | |
AGGAACCACTCACTAAGGTA+TGG | - | chr1_4:34598238-34598257 | Msa0160900:CDS | 45.0% | |
CTTCACCATACCTTAGTGAG+TGG | + | chr1_4:34598246-34598265 | None:intergenic | 45.0% | |
AGGCCAACAAATACTCCCAA+CGG | + | chr1_4:34598457-34598476 | None:intergenic | 45.0% | |
ACCTTTCTCAAAGCAATGGG+TGG | - | chr1_4:34598559-34598578 | Msa0160900:CDS | 45.0% | |
CCTTTCTCAAAGCAATGGGT+GGG | - | chr1_4:34598560-34598579 | Msa0160900:CDS | 45.0% | |
TCAAGATGCAGCAATGGCTA+AGG | - | chr1_4:34598609-34598628 | Msa0160900:CDS | 45.0% | |
!! | TGTCGGCTTGTACAAGCATA+GGG | + | chr1_4:34599097-34599116 | None:intergenic | 45.0% |
!! | TTGTCGGCTTGTACAAGCAT+AGG | + | chr1_4:34599098-34599117 | None:intergenic | 45.0% |
AACGTTGGACAAGAGATGCA+AGG | - | chr1_4:34599381-34599400 | Msa0160900:intron | 45.0% | |
TTGGACAAGAGATGCAAGGT+TGG | - | chr1_4:34599385-34599404 | Msa0160900:intron | 45.0% | |
TGGACAAGAGATGCAAGGTT+GGG | - | chr1_4:34599386-34599405 | Msa0160900:intron | 45.0% | |
TGGACACTGTTGATCTTGGT+GGG | - | chr1_4:34599675-34599694 | Msa0160900:intron | 45.0% | |
AGAGCCGAGATTGCTTAGAT+AGG | - | chr1_4:34599711-34599730 | Msa0160900:intron | 45.0% | |
CCAAGCATGTATGCCATCAT+GGG | + | chr1_4:34600096-34600115 | None:intergenic | 45.0% | |
TCCAAGCATGTATGCCATCA+TGG | + | chr1_4:34600097-34600116 | None:intergenic | 45.0% | |
GATGGCATACATGCTTGGAA+TGG | - | chr1_4:34600098-34600117 | Msa0160900:intron | 45.0% | |
CATGGCTTCCATATCCAGAT+TGG | + | chr1_4:34600127-34600146 | None:intergenic | 45.0% | |
GAACGAGAAAGGGCAGATTT+AGG | - | chr1_4:34600580-34600599 | Msa0160900:intron | 45.0% | |
!! | TGTTGGCTTCTAGAAAGGGT+AGG | - | chr1_4:34600622-34600641 | Msa0160900:intron | 45.0% |
GAAAGGGTAGGTTTGCAAAG+AGG | - | chr1_4:34600634-34600653 | Msa0160900:intron | 45.0% | |
!!! | CAAAAAAATTAATTTTATAT+TGG | - | chr1_4:34596272-34596291 | Msa0160900:CDS | 5.0% |
!!! | TTTTAAAATTTAATATTATG+TGG | - | chr1_4:34596590-34596609 | Msa0160900:intron | 5.0% |
ATGCCAAGTCAGCTGAACAG+CGG | + | chr1_4:34595754-34595773 | None:intergenic | 50.0% | |
! | ACTGTGCAACTTTTGCCACG+TGG | - | chr1_4:34595799-34595818 | Msa0160900:CDS | 50.0% |
!!! | TTGGCATGGTTTTGGCCATG+TGG | + | chr1_4:34596663-34596682 | None:intergenic | 50.0% |
GCCAAGTCAGTTGAACAGTG+GGG | - | chr1_4:34596678-34596697 | Msa0160900:CDS | 50.0% | |
TCGTTGCTTCACTTCTGCGT+TGG | - | chr1_4:34597330-34597349 | Msa0160900:CDS | 50.0% | |
! | AGACCTGAAGCTTGCTCCAA+TGG | - | chr1_4:34597415-34597434 | Msa0160900:CDS | 50.0% |
CTACCATTGGAGCAAGCTTC+AGG | + | chr1_4:34597421-34597440 | None:intergenic | 50.0% | |
TCACCATTCATCACCACCTC+TGG | - | chr1_4:34597472-34597491 | Msa0160900:intron | 50.0% | |
CACCATTCATCACCACCTCT+GGG | - | chr1_4:34597473-34597492 | Msa0160900:intron | 50.0% | |
AAAATCTTACCGGTGCCCAG+AGG | + | chr1_4:34597491-34597510 | None:intergenic | 50.0% | |
GCTCGAGCAGAAACTAGAAC+AGG | - | chr1_4:34597935-34597954 | Msa0160900:CDS | 50.0% | |
CATACTCAGCTGGCAGAAGA+AGG | + | chr1_4:34598042-34598061 | None:intergenic | 50.0% | |
!! | CGTCCGTTGGGAGTATTTGT+TGG | - | chr1_4:34598451-34598470 | Msa0160900:CDS | 50.0% |
!! | CCCACCCATTGCTTTGAGAA+AGG | + | chr1_4:34598563-34598582 | None:intergenic | 50.0% |
GTGCGAAAGACTTTCACTGC+AGG | - | chr1_4:34598889-34598908 | Msa0160900:intron | 50.0% | |
GTGGACACTGTTGATCTTGG+TGG | - | chr1_4:34599674-34599693 | Msa0160900:intron | 50.0% | |
GGACACTGTTGATCTTGGTG+GGG | - | chr1_4:34599676-34599695 | Msa0160900:intron | 50.0% | |
CAATCTCCAGCAACCCATGA+TGG | - | chr1_4:34600080-34600099 | Msa0160900:intron | 50.0% | |
! | TGTATGCCATCATGGGTTGC+TGG | + | chr1_4:34600089-34600108 | None:intergenic | 50.0% |
CCCATGATGGCATACATGCT+TGG | - | chr1_4:34600093-34600112 | Msa0160900:intron | 50.0% | |
GCTTGGAATGGAAGCCAATC+TGG | - | chr1_4:34600110-34600129 | Msa0160900:intron | 50.0% | |
!! | GAGGGCTTTGCTTTGAGATG+CGG | - | chr1_4:34600676-34600695 | Msa0160900:intron | 50.0% |
!! | TTTGCTTTGAGATGCGGCGA+CGG | - | chr1_4:34600682-34600701 | Msa0160900:intron | 50.0% |
TGCCAAGTCAGCTGAACAGC+GGG | + | chr1_4:34595753-34595772 | None:intergenic | 55.0% | |
!! | GCTGTTCAGCTGACTTGGCA+TGG | - | chr1_4:34595753-34595772 | Msa0160900:CDS | 55.0% |
TTGGCATGGTATTCGCCACG+TGG | - | chr1_4:34595767-34595786 | Msa0160900:CDS | 55.0% | |
ACTGTGCAACTTTCGCCACG+TGG | + | chr1_4:34596631-34596650 | None:intergenic | 55.0% | |
CACAGTCAGCAACTGCCACA+TGG | - | chr1_4:34596645-34596664 | Msa0160900:CDS | 55.0% | |
GCCCCACTGTTCAACTGACT+TGG | + | chr1_4:34596682-34596701 | None:intergenic | 55.0% | |
TCAGTTGAACAGTGGGGCCA+GGG | - | chr1_4:34596684-34596703 | Msa0160900:CDS | 55.0% | |
TTCAGAATCGACGTCGTCGG+AGG | + | chr1_4:34597366-34597385 | None:intergenic | 55.0% | |
! | TGCCCAGAGGTGGTGATGAA+TGG | + | chr1_4:34597478-34597497 | None:intergenic | 55.0% |
! | GGAGTTTGAGTCTGAGGCCT+TGG | - | chr1_4:34597751-34597770 | Msa0160900:CDS | 55.0% |
TGCTCCAAAGAGGGTAGACG+CGG | - | chr1_4:34597881-34597900 | Msa0160900:CDS | 55.0% | |
! | AGGTTTGCAAAGAGGCGCGA+CGG | - | chr1_4:34600642-34600661 | Msa0160900:intron | 55.0% |
GCCAAGTCAGCTGAACAGCG+GGG | + | chr1_4:34595752-34595771 | None:intergenic | 60.0% | |
CACAGTCAGCAACTGCCACG+TGG | + | chr1_4:34595785-34595804 | None:intergenic | 60.0% | |
GTCAGTTGAACAGTGGGGCC+AGG | - | chr1_4:34596683-34596702 | Msa0160900:CDS | 60.0% | |
TCATCACCACCTCTGGGCAC+CGG | - | chr1_4:34597479-34597498 | Msa0160900:intron | 60.0% | |
ATCTTACCGGTGCCCAGAGG+TGG | + | chr1_4:34597488-34597507 | None:intergenic | 60.0% | |
GACACCGCGTCTACCCTCTT+TGG | + | chr1_4:34597888-34597907 | None:intergenic | 60.0% | |
! | TTTGCAAAGAGGCGCGACGG+TGG | - | chr1_4:34600645-34600664 | Msa0160900:intron | 60.0% |
GCCCCGCTGTTCAGCTGACT+TGG | - | chr1_4:34595748-34595767 | Msa0160900:CDS | 65.0% | |
!! | TTTGCCACGTGGCGCTGACG+TGG | - | chr1_4:34595810-34595829 | Msa0160900:CDS | 65.0% |
!! | GCTTTGAGATGCGGCGACGG+CGG | - | chr1_4:34600685-34600704 | Msa0160900:intron | 65.0% |
GTCAGCTGAACAGCGGGGCC+AGG | + | chr1_4:34595747-34595766 | None:intergenic | 70.0% | |
!! | TTCGCCACGTGGCGCTGACG+TGG | + | chr1_4:34596620-34596639 | None:intergenic | 70.0% |
! | AAGAGGCGCGACGGTGGCAG+TGG | - | chr1_4:34600651-34600670 | Msa0160900:intron | 70.0% |
TGCGGCGACGGCGGAAGTGA+CGG | - | chr1_4:34600694-34600713 | Msa0160900:CDS | 70.0% | |
!! | GCCACGTGGCGCTGACGTGG+CGG | - | chr1_4:34595813-34595832 | Msa0160900:CDS | 75.0% |
ACCGCCACGTCAGCGCCACG+TGG | + | chr1_4:34595817-34595836 | None:intergenic | 75.0% | |
CACGCCACGTCAGCGCCACG+TGG | - | chr1_4:34596613-34596632 | Msa0160900:intron | 75.0% | |
AGGCGCGACGGTGGCAGTGG+CGG | - | chr1_4:34600654-34600673 | Msa0160900:intron | 75.0% | |
! | GCGACGGTGGCAGTGGCGGA+GGG | - | chr1_4:34600658-34600677 | Msa0160900:intron | 75.0% |
GGCGACGGCGGAAGTGACGG+AGG | - | chr1_4:34600697-34600716 | Msa0160900:CDS | 75.0% | |
! | CGCGACGGTGGCAGTGGCGG+AGG | - | chr1_4:34600657-34600676 | Msa0160900:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 34595738 | 34600726 | 34595738 | ID=Msa0160900;Name=Msa0160900 |
chr1_4 | mRNA | 34595738 | 34600726 | 34595738 | ID=Msa0160900-mRNA-1;Parent=Msa0160900;Name=Msa0160900-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.57|1|1|7|0|860 |
chr1_4 | exon | 34600690 | 34600726 | 34600690 | ID=Msa0160900-mRNA-1:exon:10604;Parent=Msa0160900-mRNA-1 |
chr1_4 | exon | 34598964 | 34599047 | 34598964 | ID=Msa0160900-mRNA-1:exon:10603;Parent=Msa0160900-mRNA-1 |
chr1_4 | exon | 34597554 | 34598825 | 34597554 | ID=Msa0160900-mRNA-1:exon:10602;Parent=Msa0160900-mRNA-1 |
chr1_4 | exon | 34596644 | 34597452 | 34596644 | ID=Msa0160900-mRNA-1:exon:10601;Parent=Msa0160900-mRNA-1 |
chr1_4 | exon | 34596484 | 34596549 | 34596484 | ID=Msa0160900-mRNA-1:exon:10600;Parent=Msa0160900-mRNA-1 |
chr1_4 | exon | 34596227 | 34596387 | 34596227 | ID=Msa0160900-mRNA-1:exon:10599;Parent=Msa0160900-mRNA-1 |
chr1_4 | exon | 34595738 | 34595891 | 34595738 | ID=Msa0160900-mRNA-1:exon:10598;Parent=Msa0160900-mRNA-1 |
chr1_4 | CDS | 34600690 | 34600726 | 34600690 | ID=Msa0160900-mRNA-1:cds;Parent=Msa0160900-mRNA-1 |
chr1_4 | CDS | 34598964 | 34599047 | 34598964 | ID=Msa0160900-mRNA-1:cds;Parent=Msa0160900-mRNA-1 |
chr1_4 | CDS | 34597554 | 34598825 | 34597554 | ID=Msa0160900-mRNA-1:cds;Parent=Msa0160900-mRNA-1 |
chr1_4 | CDS | 34596644 | 34597452 | 34596644 | ID=Msa0160900-mRNA-1:cds;Parent=Msa0160900-mRNA-1 |
chr1_4 | CDS | 34596484 | 34596549 | 34596484 | ID=Msa0160900-mRNA-1:cds;Parent=Msa0160900-mRNA-1 |
chr1_4 | CDS | 34596227 | 34596387 | 34596227 | ID=Msa0160900-mRNA-1:cds;Parent=Msa0160900-mRNA-1 |
chr1_4 | CDS | 34595738 | 34595891 | 34595738 | ID=Msa0160900-mRNA-1:cds;Parent=Msa0160900-mRNA-1 |
Gene Sequence |
Protein sequence |