Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877360 | XP_003618859.1 | 91.985 | 262 | 20 | 1 | 1 | 261 | 5 | 266 | 2.18e-175 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877360 | sp|A0A3Q8GYY4|NEPS2_NEPRA | 55.336 | 253 | 110 | 2 | 9 | 258 | 7 | 259 | 1.52e-91 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877360 | G7KNQ4 | 91.985 | 262 | 20 | 1 | 1 | 261 | 5 | 266 | 1.04e-175 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044160 | Msa0877360 | 0.811471 | 6.886168e-51 | -8.615850e-47 |
| Msa0723090 | Msa0877360 | 0.806998 | 6.263377e-50 | -8.615850e-47 |
| Msa0795750 | Msa0877360 | 0.804146 | 2.485404e-49 | -8.615850e-47 |
| Msa0209140 | Msa0877360 | 0.824365 | 8.399016e-54 | -8.615850e-47 |
| Msa0412790 | Msa0877360 | 0.806544 | 7.812152e-50 | -8.615850e-47 |
| Msa0437520 | Msa0877360 | 0.807651 | 4.554577e-50 | -8.615850e-47 |
| Msa0877360 | Msa1022420 | 0.813672 | 2.273092e-51 | -8.615850e-47 |
| Msa0877360 | Msa1044250 | 0.816229 | 6.157936e-52 | -8.615850e-47 |
| Msa0877360 | Msa1106590 | 0.800857 | 1.183807e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877360 | MtrunA17_Chr6g0459301 | 91.985 | 262 | 20 | 1 | 1 | 261 | 5 | 266 | 2.01e-179 | 493 |
| Msa0877360 | MtrunA17_Chr6g0459261 | 83.462 | 260 | 43 | 0 | 2 | 261 | 18 | 277 | 9.36e-162 | 449 |
| Msa0877360 | MtrunA17_Chr6g0459271 | 84.231 | 260 | 41 | 0 | 2 | 261 | 6 | 265 | 2.81e-155 | 432 |
| Msa0877360 | MtrunA17_Chr6g0459331 | 84.646 | 254 | 39 | 0 | 4 | 257 | 8 | 261 | 2.45e-152 | 425 |
| Msa0877360 | MtrunA17_Chr6g0459281 | 71.318 | 258 | 74 | 0 | 4 | 261 | 8 | 265 | 2.02e-137 | 387 |
| Msa0877360 | MtrunA17_Chr6g0459351 | 71.705 | 258 | 73 | 0 | 4 | 261 | 8 | 265 | 4.24e-134 | 379 |
| Msa0877360 | MtrunA17_Chr7g0270441 | 50.198 | 253 | 125 | 1 | 5 | 257 | 2 | 253 | 3.02e-82 | 247 |
| Msa0877360 | MtrunA17_Chr7g0266981 | 50.000 | 250 | 123 | 2 | 8 | 257 | 12 | 259 | 8.08e-78 | 236 |
| Msa0877360 | MtrunA17_Chr4g0044111 | 49.600 | 250 | 124 | 2 | 8 | 257 | 12 | 259 | 4.36e-77 | 234 |
| Msa0877360 | MtrunA17_Chr2g0324021 | 45.850 | 253 | 135 | 2 | 5 | 257 | 2 | 252 | 5.21e-76 | 231 |
| Msa0877360 | MtrunA17_Chr7g0270451 | 47.600 | 250 | 129 | 2 | 8 | 257 | 5 | 252 | 6.69e-76 | 231 |
| Msa0877360 | MtrunA17_Chr7g0266891 | 48.996 | 249 | 125 | 2 | 9 | 257 | 7 | 253 | 9.27e-75 | 228 |
| Msa0877360 | MtrunA17_Chr4g0026001 | 46.640 | 253 | 130 | 3 | 8 | 260 | 13 | 260 | 1.19e-71 | 221 |
| Msa0877360 | MtrunA17_Chr4g0025971 | 45.312 | 256 | 135 | 3 | 1 | 256 | 6 | 256 | 2.52e-71 | 219 |
| Msa0877360 | MtrunA17_Chr4g0025981 | 46.122 | 245 | 127 | 3 | 11 | 255 | 43 | 282 | 3.49e-69 | 216 |
| Msa0877360 | MtrunA17_Chr7g0244061 | 43.015 | 272 | 133 | 5 | 5 | 257 | 25 | 293 | 3.23e-66 | 207 |
| Msa0877360 | MtrunA17_Chr4g0040371 | 43.969 | 257 | 133 | 3 | 8 | 257 | 18 | 270 | 6.62e-62 | 196 |
| Msa0877360 | MtrunA17_Chr7g0252031 | 43.359 | 256 | 136 | 6 | 8 | 257 | 34 | 286 | 3.68e-61 | 195 |
| Msa0877360 | MtrunA17_Chr4g0044131 | 40.400 | 250 | 147 | 2 | 8 | 257 | 7 | 254 | 1.65e-60 | 192 |
| Msa0877360 | MtrunA17_Chr7g0268591 | 40.154 | 259 | 147 | 4 | 8 | 261 | 32 | 287 | 7.76e-60 | 191 |
| Msa0877360 | MtrunA17_Chr3g0084871 | 41.264 | 269 | 137 | 6 | 2 | 257 | 9 | 269 | 1.22e-54 | 177 |
| Msa0877360 | MtrunA17_Chr7g0267011 | 43.915 | 189 | 104 | 2 | 8 | 196 | 7 | 193 | 3.62e-50 | 163 |
| Msa0877360 | MtrunA17_Chr7g0267001 | 36.800 | 250 | 138 | 3 | 8 | 257 | 7 | 236 | 3.56e-48 | 160 |
| Msa0877360 | MtrunA17_Chr7g0266991 | 41.558 | 231 | 116 | 3 | 8 | 238 | 24 | 235 | 6.33e-46 | 154 |
| Msa0877360 | MtrunA17_Chr6g0463951 | 47.904 | 167 | 86 | 1 | 91 | 257 | 1 | 166 | 2.39e-45 | 150 |
| Msa0877360 | MtrunA17_Chr7g0270471 | 46.099 | 141 | 76 | 0 | 117 | 257 | 1 | 141 | 2.39e-39 | 134 |
| Msa0877360 | MtrunA17_Chr4g0044121 | 41.916 | 167 | 96 | 1 | 91 | 257 | 1 | 166 | 6.29e-35 | 123 |
| Msa0877360 | MtrunA17_Chr7g0272961 | 32.197 | 264 | 154 | 8 | 8 | 258 | 39 | 290 | 3.02e-29 | 112 |
| Msa0877360 | MtrunA17_Chr1g0191751 | 33.333 | 267 | 153 | 10 | 5 | 258 | 97 | 351 | 1.30e-28 | 111 |
| Msa0877360 | MtrunA17_Chr7g0270461 | 54.369 | 103 | 46 | 1 | 8 | 110 | 45 | 146 | 4.13e-28 | 105 |
| Msa0877360 | MtrunA17_Chr4g0074511 | 30.000 | 270 | 161 | 8 | 4 | 258 | 35 | 291 | 3.93e-25 | 100 |
| Msa0877360 | MtrunA17_Chr4g0075531 | 31.225 | 253 | 161 | 6 | 8 | 257 | 6 | 248 | 5.26e-25 | 99.8 |
| Msa0877360 | MtrunA17_Chr3g0122901 | 28.462 | 260 | 163 | 8 | 8 | 258 | 74 | 319 | 1.85e-24 | 99.8 |
| Msa0877360 | MtrunA17_Chr7g0259521 | 30.534 | 262 | 168 | 6 | 5 | 259 | 2 | 256 | 2.65e-24 | 98.2 |
| Msa0877360 | MtrunA17_Chr3g0142651 | 41.284 | 109 | 63 | 1 | 91 | 199 | 1 | 108 | 1.39e-23 | 92.8 |
| Msa0877360 | MtrunA17_Chr0c30g0494101 | 29.520 | 271 | 159 | 9 | 4 | 258 | 35 | 289 | 1.64e-21 | 91.3 |
| Msa0877360 | MtrunA17_Chr7g0259531 | 32.184 | 261 | 159 | 8 | 6 | 257 | 8 | 259 | 2.16e-21 | 90.5 |
| Msa0877360 | MtrunA17_Chr1g0182511 | 29.008 | 262 | 169 | 7 | 6 | 258 | 11 | 264 | 2.98e-19 | 84.3 |
| Msa0877360 | MtrunA17_Chr7g0239481 | 28.077 | 260 | 179 | 6 | 3 | 258 | 9 | 264 | 2.19e-16 | 76.6 |
| Msa0877360 | MtrunA17_Chr4g0028911 | 25.984 | 254 | 179 | 6 | 9 | 256 | 11 | 261 | 8.76e-16 | 75.1 |
| Msa0877360 | MtrunA17_Chr4g0028921 | 26.255 | 259 | 172 | 7 | 9 | 256 | 11 | 261 | 3.47e-15 | 73.6 |
| Msa0877360 | MtrunA17_Chr7g0239501 | 26.996 | 263 | 176 | 7 | 3 | 257 | 10 | 264 | 4.51e-15 | 73.2 |
| Msa0877360 | MtrunA17_Chr4g0032181 | 27.835 | 194 | 131 | 5 | 66 | 257 | 59 | 245 | 9.37e-14 | 68.9 |
| Msa0877360 | MtrunA17_Chr6g0459341 | 71.111 | 45 | 13 | 0 | 4 | 48 | 8 | 52 | 1.04e-13 | 65.9 |
| Msa0877360 | MtrunA17_Chr3g0112141 | 27.652 | 264 | 157 | 10 | 9 | 257 | 17 | 261 | 2.41e-13 | 68.2 |
| Msa0877360 | MtrunA17_Chr4g0045041 | 28.365 | 208 | 129 | 6 | 10 | 202 | 5 | 207 | 3.09e-13 | 69.3 |
| Msa0877360 | MtrunA17_Chr3g0112151 | 26.667 | 270 | 164 | 10 | 3 | 257 | 80 | 330 | 1.53e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877360 | AT2G47140.1 | 48.617 | 253 | 128 | 2 | 5 | 257 | 2 | 252 | 4.04e-79 | 239 |
| Msa0877360 | AT3G29260.1 | 48.438 | 256 | 123 | 5 | 5 | 257 | 2 | 251 | 4.09e-71 | 219 |
| Msa0877360 | AT3G29250.2 | 46.640 | 253 | 133 | 2 | 5 | 257 | 2 | 252 | 4.60e-71 | 219 |
| Msa0877360 | AT3G29250.3 | 46.640 | 253 | 133 | 2 | 5 | 257 | 38 | 288 | 1.40e-70 | 219 |
| Msa0877360 | AT2G47130.1 | 46.484 | 256 | 128 | 4 | 5 | 257 | 2 | 251 | 7.62e-70 | 216 |
| Msa0877360 | AT2G47120.1 | 44.961 | 258 | 128 | 5 | 5 | 257 | 2 | 250 | 9.77e-70 | 216 |
| Msa0877360 | AT3G29250.1 | 46.275 | 255 | 133 | 3 | 5 | 257 | 38 | 290 | 1.37e-68 | 214 |
| Msa0877360 | AT2G47120.2 | 44.706 | 255 | 127 | 5 | 8 | 257 | 6 | 251 | 1.65e-68 | 213 |
| Msa0877360 | AT3G26770.1 | 44.186 | 258 | 135 | 5 | 6 | 257 | 38 | 292 | 6.65e-66 | 207 |
| Msa0877360 | AT3G26760.1 | 41.221 | 262 | 143 | 5 | 4 | 257 | 31 | 289 | 1.29e-60 | 194 |
| Msa0877360 | AT4G03140.1 | 40.392 | 255 | 144 | 4 | 8 | 257 | 77 | 328 | 1.57e-58 | 189 |
| Msa0877360 | AT1G52340.1 | 41.379 | 261 | 139 | 5 | 8 | 257 | 17 | 274 | 4.11e-55 | 179 |
| Msa0877360 | AT3G51680.1 | 39.773 | 264 | 143 | 5 | 8 | 256 | 31 | 293 | 5.77e-54 | 177 |
| Msa0877360 | AT3G42960.1 | 42.205 | 263 | 138 | 7 | 4 | 257 | 3 | 260 | 3.07e-51 | 169 |
| Msa0877360 | AT2G47150.1 | 33.465 | 254 | 104 | 8 | 9 | 257 | 1 | 194 | 1.22e-29 | 110 |
| Msa0877360 | AT1G54870.2 | 31.679 | 262 | 162 | 8 | 6 | 258 | 81 | 334 | 2.77e-26 | 105 |
| Msa0877360 | AT1G54870.1 | 31.679 | 262 | 162 | 8 | 6 | 258 | 79 | 332 | 2.89e-26 | 105 |
| Msa0877360 | AT5G18210.1 | 30.385 | 260 | 164 | 6 | 9 | 258 | 8 | 260 | 1.79e-24 | 99.0 |
| Msa0877360 | AT3G05260.1 | 29.167 | 264 | 169 | 8 | 4 | 258 | 32 | 286 | 4.50e-23 | 95.9 |
| Msa0877360 | AT4G13180.1 | 27.941 | 272 | 162 | 9 | 4 | 258 | 8 | 262 | 1.01e-21 | 91.7 |
| Msa0877360 | AT5G18210.2 | 30.502 | 259 | 150 | 7 | 9 | 257 | 8 | 246 | 4.32e-21 | 90.1 |
| Msa0877360 | AT4G05530.1 | 31.008 | 258 | 169 | 5 | 1 | 257 | 1 | 250 | 1.11e-20 | 88.6 |
| Msa0877360 | AT3G03980.1 | 28.625 | 269 | 171 | 6 | 4 | 258 | 9 | 270 | 3.32e-20 | 87.8 |
| Msa0877360 | AT3G04000.1 | 27.444 | 266 | 175 | 5 | 4 | 256 | 9 | 269 | 3.83e-19 | 84.7 |
| Msa0877360 | AT2G29340.2 | 29.412 | 272 | 156 | 10 | 1 | 257 | 1 | 251 | 2.73e-18 | 82.4 |
| Msa0877360 | AT2G29310.1 | 29.889 | 271 | 142 | 10 | 9 | 257 | 7 | 251 | 3.18e-18 | 82.0 |
| Msa0877360 | AT2G29340.1 | 29.412 | 272 | 156 | 10 | 1 | 257 | 1 | 251 | 4.63e-18 | 82.4 |
| Msa0877360 | AT1G24360.1 | 26.848 | 257 | 169 | 8 | 8 | 257 | 73 | 317 | 5.89e-18 | 82.0 |
| Msa0877360 | AT2G29330.1 | 27.273 | 264 | 158 | 8 | 9 | 257 | 7 | 251 | 2.18e-16 | 77.0 |
| Msa0877360 | AT1G63380.4 | 26.562 | 256 | 176 | 7 | 9 | 256 | 19 | 270 | 4.27e-16 | 76.6 |
| Msa0877360 | AT1G63380.3 | 26.562 | 256 | 176 | 7 | 9 | 256 | 15 | 266 | 4.73e-16 | 76.3 |
| Msa0877360 | AT1G63380.1 | 26.562 | 256 | 176 | 7 | 9 | 256 | 17 | 268 | 5.40e-16 | 76.3 |
| Msa0877360 | AT1G63380.2 | 26.562 | 256 | 176 | 7 | 9 | 256 | 22 | 273 | 5.44e-16 | 76.3 |
| Msa0877360 | AT5G06060.1 | 26.937 | 271 | 166 | 8 | 1 | 257 | 1 | 253 | 8.59e-16 | 75.5 |
| Msa0877360 | AT1G62610.2 | 26.172 | 256 | 177 | 7 | 9 | 256 | 13 | 264 | 1.51e-15 | 74.7 |
| Msa0877360 | AT1G62610.3 | 26.172 | 256 | 177 | 7 | 9 | 256 | 15 | 266 | 1.59e-15 | 74.7 |
| Msa0877360 | AT1G62610.1 | 26.172 | 256 | 177 | 7 | 9 | 256 | 14 | 265 | 1.64e-15 | 74.7 |
| Msa0877360 | AT1G62610.4 | 26.172 | 256 | 177 | 7 | 9 | 256 | 19 | 270 | 1.92e-15 | 74.7 |
| Msa0877360 | AT1G07450.1 | 29.213 | 267 | 148 | 11 | 9 | 257 | 8 | 251 | 2.97e-15 | 73.9 |
| Msa0877360 | AT3G46170.1 | 25.287 | 261 | 174 | 8 | 8 | 256 | 25 | 276 | 2.76e-14 | 71.6 |
| Msa0877360 | AT3G55290.2 | 25.000 | 260 | 174 | 7 | 9 | 256 | 17 | 267 | 1.38e-13 | 69.3 |
| Msa0877360 | AT3G55290.1 | 25.000 | 260 | 174 | 7 | 9 | 256 | 18 | 268 | 1.51e-13 | 69.3 |
| Msa0877360 | AT2G29310.2 | 28.700 | 223 | 123 | 8 | 46 | 257 | 52 | 249 | 4.17e-13 | 67.8 |
| Msa0877360 | AT3G47350.1 | 24.096 | 249 | 164 | 8 | 9 | 241 | 44 | 283 | 9.47e-13 | 67.4 |
| Msa0877360 | AT3G47360.1 | 26.289 | 194 | 131 | 5 | 12 | 200 | 48 | 234 | 1.16e-12 | 67.0 |
| Msa0877360 | AT2G29260.1 | 25.385 | 260 | 182 | 7 | 1 | 256 | 60 | 311 | 1.70e-12 | 66.6 |
| Msa0877360 | AT2G29300.2 | 27.839 | 273 | 150 | 13 | 9 | 259 | 7 | 254 | 2.04e-12 | 66.2 |
| Msa0877360 | AT2G29320.1 | 27.612 | 268 | 153 | 11 | 9 | 257 | 13 | 258 | 2.39e-12 | 65.9 |
| Msa0877360 | AT2G29340.3 | 28.037 | 214 | 123 | 8 | 1 | 200 | 1 | 197 | 3.50e-12 | 64.3 |
| Msa0877360 | AT2G29340.4 | 28.037 | 214 | 123 | 8 | 1 | 200 | 1 | 197 | 3.50e-12 | 64.3 |
| Msa0877360 | AT2G29300.1 | 28.000 | 275 | 150 | 13 | 9 | 260 | 7 | 256 | 5.20e-12 | 64.7 |
| Msa0877360 | AT3G55310.1 | 24.427 | 262 | 173 | 8 | 9 | 256 | 17 | 267 | 6.18e-12 | 64.7 |
| Msa0877360 | AT3G47350.2 | 24.873 | 197 | 136 | 5 | 9 | 200 | 44 | 233 | 6.98e-12 | 64.7 |
| Msa0877360 | AT2G29350.2 | 29.048 | 210 | 122 | 8 | 4 | 200 | 10 | 205 | 7.05e-12 | 63.9 |
| Msa0877360 | AT5G50770.1 | 28.877 | 187 | 125 | 5 | 9 | 192 | 45 | 226 | 9.07e-12 | 64.7 |
| Msa0877360 | AT2G29310.3 | 29.384 | 211 | 110 | 8 | 9 | 200 | 7 | 197 | 1.44e-11 | 62.4 |
Find 70 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGACGGTGGATTTGTTTA+TGG | 0.160976 | 6_1:-16784611 | Msa0877360:CDS |
| TAATCTTAGACTAGAGTTTC+TGG | 0.222230 | 6_1:+16785487 | None:intergenic |
| CAATGGTGGAGGGGCGCGTT+AGG | 0.251861 | 6_1:-16784967 | Msa0877360:CDS |
| CAATCAACGGTTAATACTTA+TGG | 0.256946 | 6_1:-16785257 | Msa0877360:CDS |
| GTTGTGCACTAAACTATATT+TGG | 0.261324 | 6_1:-16785530 | Msa0877360:five_prime_UTR |
| ATGTCAAAGCACACAGTATT+GGG | 0.299970 | 6_1:-16784878 | Msa0877360:CDS |
| AACTCTAGTCTAAGATTATC+AGG | 0.316109 | 6_1:-16785482 | Msa0877360:CDS |
| TCTGGTCATAGCTTCATGTT+TGG | 0.341049 | 6_1:+16785505 | None:intergenic |
| AATGGTGGAGGGGCGCGTTA+GGG | 0.343850 | 6_1:-16784966 | Msa0877360:CDS |
| GCATGCAACCAGCGTGCAAC+TGG | 0.368434 | 6_1:-16784849 | Msa0877360:CDS |
| ATGGTGGAGGGGCGCGTTAG+GGG | 0.370385 | 6_1:-16784965 | Msa0877360:CDS |
| ATCGGTTGGACTAAAGATTC+CGG | 0.377217 | 6_1:+16785084 | None:intergenic |
| CTTGAATGCCAAGTTCATCT+TGG | 0.426148 | 6_1:+16785360 | None:intergenic |
| AGTGGATGTAGGTGCACCTT+TGG | 0.435399 | 6_1:+16785318 | None:intergenic |
| GAACATTGATTGTGAATAAA+CGG | 0.441133 | 6_1:+16785026 | None:intergenic |
| CGCGCCCCTCCACCATTGCA+CGG | 0.441858 | 6_1:+16784972 | None:intergenic |
| TGGTGGAGGGGCGCGTTAGG+GGG | 0.443091 | 6_1:-16784964 | Msa0877360:CDS |
| TGGACTAAAGATTCCGGCAT+TGG | 0.443211 | 6_1:+16785090 | None:intergenic |
| AAAGGATATGCAAGACTTGA+AGG | 0.443745 | 6_1:-16784722 | Msa0877360:CDS |
| TGCAGCCCGTGCAATGGTGG+AGG | 0.459063 | 6_1:-16784978 | Msa0877360:CDS |
| AAGGCACAAGAGACTTATAA+AGG | 0.461345 | 6_1:-16784740 | Msa0877360:CDS |
| TCCAACACAGTTTGATCGGT+TGG | 0.467057 | 6_1:+16785070 | None:intergenic |
| ACAGCATCTGCCACATGCTT+AGG | 0.471667 | 6_1:+16784686 | None:intergenic |
| TTATTCACAATCAATGTTCG+AGG | 0.474144 | 6_1:-16785022 | Msa0877360:CDS |
| GATATAATGTTCACCAATGC+CGG | 0.479834 | 6_1:-16785103 | Msa0877360:CDS |
| GATGTCAAAGCACACAGTAT+TGG | 0.492906 | 6_1:-16784879 | Msa0877360:CDS |
| TGATTGTGAATAAACGGTCT+AGG | 0.499386 | 6_1:+16785032 | None:intergenic |
| AAAGGTGTCGCGAGTCCATT+CGG | 0.500418 | 6_1:+16784794 | None:intergenic |
| ACTAGCACCACCCGTGATGA+TGG | 0.502192 | 6_1:+16785451 | None:intergenic |
| CACAATCAATGTTCGAGGAA+TGG | 0.504145 | 6_1:-16785017 | Msa0877360:CDS |
| ACGGGTGGTGCTAGTGGCAT+CGG | 0.517674 | 6_1:-16785443 | Msa0877360:CDS |
| GCAGCCCGTGCAATGGTGGA+GGG | 0.522760 | 6_1:-16784977 | Msa0877360:CDS |
| GGCAAAATAGCCATCATCAC+GGG | 0.526330 | 6_1:-16785461 | Msa0877360:CDS |
| CACCGTCGACACTAAGATCA+AGG | 0.530151 | 6_1:+16784624 | None:intergenic |
| AATGATGCTGAGTTTGTCAC+TGG | 0.531303 | 6_1:-16784647 | Msa0877360:CDS |
| AACGGTTAATACTTATGGAC+AGG | 0.532873 | 6_1:-16785252 | Msa0877360:intron |
| TTTAGGGGTGAGTGAGGAGA+AGG | 0.535551 | 6_1:-16784759 | Msa0877360:CDS |
| GCGCCCCTCCACCATTGCAC+GGG | 0.541845 | 6_1:+16784973 | None:intergenic |
| GAGTTCCAACACAGTTTGAT+CGG | 0.542405 | 6_1:+16785066 | None:intergenic |
| GGGAGTGCTCACGGTAGTCA+TGG | 0.546162 | 6_1:-16784926 | Msa0877360:CDS |
| GCTGACATCCAAGATGAACT+TGG | 0.551641 | 6_1:-16785368 | Msa0877360:CDS |
| ATCATCACGGGTGGTGCTAG+TGG | 0.552992 | 6_1:-16785449 | Msa0877360:CDS |
| GGCCTTGATCTTAGTGTCGA+CGG | 0.553227 | 6_1:-16784626 | Msa0877360:CDS |
| TGTGAATAAACGGTCTAGGT+TGG | 0.553958 | 6_1:+16785036 | None:intergenic |
| GTGAACTGTGTCTCGCCGAA+TGG | 0.562393 | 6_1:-16784809 | Msa0877360:CDS |
| TAGTGGCATCGGTGAAGCCA+CGG | 0.573146 | 6_1:-16785432 | Msa0877360:CDS |
| CAGCCCGTGCAATGGTGGAG+GGG | 0.580685 | 6_1:-16784976 | Msa0877360:CDS |
| GTCTTTGCTAACGAAGGCGT+CGG | 0.585405 | 6_1:-16785404 | Msa0877360:CDS |
| AGCGTGCAACTGGCCGCACA+CGG | 0.589469 | 6_1:-16784839 | Msa0877360:CDS |
| TCCAACCGATCAAACTGTGT+TGG | 0.590298 | 6_1:-16785071 | Msa0877360:CDS |
| ACATGCAGCCCGTGCAATGG+TGG | 0.591192 | 6_1:-16784981 | Msa0877360:CDS |
| TCATGGATTCTTGAGGTCAA+CGG | 0.591437 | 6_1:-16784909 | Msa0877360:CDS |
| ATTCAAGTAGCTGCGTCCAT+CGG | 0.592404 | 6_1:-16785344 | Msa0877360:CDS |
| GGTGCACCTTTGGTTGCCGA+TGG | 0.593029 | 6_1:+16785328 | None:intergenic |
| CTGCGTCCATCGGCAACCAA+AGG | 0.606542 | 6_1:-16785334 | Msa0877360:CDS |
| GTTCACTCTTATTCCGTGTG+CGG | 0.626381 | 6_1:+16784826 | None:intergenic |
| GAAACATGCAGCCCGTGCAA+TGG | 0.638047 | 6_1:-16784984 | Msa0877360:CDS |
| AGGCAAAATAGCCATCATCA+CGG | 0.640770 | 6_1:-16785462 | Msa0877360:CDS |
| GGATGTCAGCAATCACAACA+TGG | 0.642460 | 6_1:+16785381 | None:intergenic |
| TGCCACATCACAGTGGATGT+AGG | 0.644985 | 6_1:+16785307 | None:intergenic |
| CACCTACATCCACTGTGATG+TGG | 0.646592 | 6_1:-16785309 | Msa0877360:CDS |
| GCGCGTGTCTTTGCTAACGA+AGG | 0.654619 | 6_1:-16785410 | Msa0877360:CDS |
| TGTCAAAGCACACAGTATTG+GGG | 0.657388 | 6_1:-16784877 | Msa0877360:CDS |
| ATATGCAAGACTTGAAGGAG+TGG | 0.664008 | 6_1:-16784717 | Msa0877360:CDS |
| CTTGATCTTAGTGTCGACGG+TGG | 0.664645 | 6_1:-16784623 | Msa0877360:CDS |
| GGTGCTCACACCTAAGCATG+TGG | 0.673012 | 6_1:-16784696 | Msa0877360:CDS |
| AAAATAGCCATCATCACGGG+TGG | 0.677019 | 6_1:-16785458 | Msa0877360:CDS |
| ACGGTAGTCATGGATTCTTG+AGG | 0.700075 | 6_1:-16784916 | Msa0877360:CDS |
| CTTCGTCTGCCACATCACAG+TGG | 0.713218 | 6_1:+16785300 | None:intergenic |
| GTTAGCAAAGACACGCGCCG+TGG | 0.733448 | 6_1:+16785415 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTGACTTGTAAATTTTTA+GGG | - | chr6_1:16785325-16785344 | Msa0877360:CDS | 20.0% |
| !!! | TTTGACTTGTAAATTTTTAG+GGG | - | chr6_1:16785326-16785345 | Msa0877360:CDS | 20.0% |
| !!! | CTTTGACTTGTAAATTTTTA+GGG | - | chr6_1:16785325-16785344 | Msa0877360:CDS | 20.0% |
| !!! | TTTGACTTGTAAATTTTTAG+GGG | - | chr6_1:16785326-16785345 | Msa0877360:CDS | 20.0% |
| !! | GAACATTGATTGTGAATAAA+CGG | + | chr6_1:16785077-16785096 | None:intergenic | 25.0% |
| ! | CCTAAAAATTTACAAGTCAA+AGG | + | chr6_1:16785327-16785346 | None:intergenic | 25.0% |
| !!! | CCTTTGACTTGTAAATTTTT+AGG | - | chr6_1:16785324-16785343 | Msa0877360:CDS | 25.0% |
| ! | ATGCAACTAAAAAAAAACGA+AGG | - | chr6_1:16785525-16785544 | Msa0877360:five_prime_UTR | 25.0% |
| !! | GAACATTGATTGTGAATAAA+CGG | + | chr6_1:16785077-16785096 | None:intergenic | 25.0% |
| ! | CCTAAAAATTTACAAGTCAA+AGG | + | chr6_1:16785327-16785346 | None:intergenic | 25.0% |
| !!! | CCTTTGACTTGTAAATTTTT+AGG | - | chr6_1:16785324-16785343 | Msa0877360:CDS | 25.0% |
| ! | ATGCAACTAAAAAAAAACGA+AGG | - | chr6_1:16785525-16785544 | Msa0877360:five_prime_UTR | 25.0% |
| GTTGTGCACTAAACTATATT+TGG | - | chr6_1:16784570-16784589 | Msa0877360:three_prime_UTR | 30.0% | |
| TAATCTTAGACTAGAGTTTC+TGG | + | chr6_1:16784616-16784635 | None:intergenic | 30.0% | |
| ! | AACTCTAGTCTAAGATTATC+AGG | - | chr6_1:16784618-16784637 | Msa0877360:CDS | 30.0% |
| CAAAAATCTCGTTCAATCAA+CGG | - | chr6_1:16784830-16784849 | Msa0877360:CDS | 30.0% | |
| CAATCAACGGTTAATACTTA+TGG | - | chr6_1:16784843-16784862 | Msa0877360:CDS | 30.0% | |
| ! | ATTTCCTATCTTAGCTTTCA+AGG | - | chr6_1:16784878-16784897 | Msa0877360:CDS | 30.0% |
| ! | TTTCCTATCTTAGCTTTCAA+GGG | - | chr6_1:16784879-16784898 | Msa0877360:CDS | 30.0% |
| TTATTCACAATCAATGTTCG+AGG | - | chr6_1:16785078-16785097 | Msa0877360:CDS | 30.0% | |
| GTTGTGCACTAAACTATATT+TGG | - | chr6_1:16784570-16784589 | Msa0877360:three_prime_UTR | 30.0% | |
| TAATCTTAGACTAGAGTTTC+TGG | + | chr6_1:16784616-16784635 | None:intergenic | 30.0% | |
| ! | AACTCTAGTCTAAGATTATC+AGG | - | chr6_1:16784618-16784637 | Msa0877360:CDS | 30.0% |
| CAAAAATCTCGTTCAATCAA+CGG | - | chr6_1:16784830-16784849 | Msa0877360:CDS | 30.0% | |
| CAATCAACGGTTAATACTTA+TGG | - | chr6_1:16784843-16784862 | Msa0877360:CDS | 30.0% | |
| ! | ATTTCCTATCTTAGCTTTCA+AGG | - | chr6_1:16784878-16784897 | Msa0877360:CDS | 30.0% |
| ! | TTTCCTATCTTAGCTTTCAA+GGG | - | chr6_1:16784879-16784898 | Msa0877360:CDS | 30.0% |
| TTATTCACAATCAATGTTCG+AGG | - | chr6_1:16785078-16785097 | Msa0877360:CDS | 30.0% | |
| AACGGTTAATACTTATGGAC+AGG | - | chr6_1:16784848-16784867 | Msa0877360:CDS | 35.0% | |
| GATTATGTTATTCTCACACC+AGG | - | chr6_1:16784972-16784991 | Msa0877360:CDS | 35.0% | |
| TGGTGAACATTATATCTACC+TGG | + | chr6_1:16784993-16785012 | None:intergenic | 35.0% | |
| GATATAATGTTCACCAATGC+CGG | - | chr6_1:16784997-16785016 | Msa0877360:CDS | 35.0% | |
| TGATTGTGAATAAACGGTCT+AGG | + | chr6_1:16785071-16785090 | None:intergenic | 35.0% | |
| ATGTCAAAGCACACAGTATT+GGG | - | chr6_1:16785222-16785241 | Msa0877360:intron | 35.0% | |
| !! | TAAATTTTTAGGGGTGAGTG+AGG | - | chr6_1:16785335-16785354 | Msa0877360:CDS | 35.0% |
| AAGGCACAAGAGACTTATAA+AGG | - | chr6_1:16785360-16785379 | Msa0877360:CDS | 35.0% | |
| AAAGGATATGCAAGACTTGA+AGG | - | chr6_1:16785378-16785397 | Msa0877360:CDS | 35.0% | |
| AACGGTTAATACTTATGGAC+AGG | - | chr6_1:16784848-16784867 | Msa0877360:CDS | 35.0% | |
| GATTATGTTATTCTCACACC+AGG | - | chr6_1:16784972-16784991 | Msa0877360:CDS | 35.0% | |
| TGGTGAACATTATATCTACC+TGG | + | chr6_1:16784993-16785012 | None:intergenic | 35.0% | |
| GATATAATGTTCACCAATGC+CGG | - | chr6_1:16784997-16785016 | Msa0877360:CDS | 35.0% | |
| TGATTGTGAATAAACGGTCT+AGG | + | chr6_1:16785071-16785090 | None:intergenic | 35.0% | |
| ATGTCAAAGCACACAGTATT+GGG | - | chr6_1:16785222-16785241 | Msa0877360:intron | 35.0% | |
| !! | TAAATTTTTAGGGGTGAGTG+AGG | - | chr6_1:16785335-16785354 | Msa0877360:CDS | 35.0% |
| AAGGCACAAGAGACTTATAA+AGG | - | chr6_1:16785360-16785379 | Msa0877360:CDS | 35.0% | |
| AAAGGATATGCAAGACTTGA+AGG | - | chr6_1:16785378-16785397 | Msa0877360:CDS | 35.0% | |
| TCTGGTCATAGCTTCATGTT+TGG | + | chr6_1:16784598-16784617 | None:intergenic | 40.0% | |
| AGGCAAAATAGCCATCATCA+CGG | - | chr6_1:16784638-16784657 | Msa0877360:CDS | 40.0% | |
| CTTGAATGCCAAGTTCATCT+TGG | + | chr6_1:16784743-16784762 | None:intergenic | 40.0% | |
| ACACCCTTGAAAGCTAAGAT+AGG | + | chr6_1:16784885-16784904 | None:intergenic | 40.0% | |
| ATCGGTTGGACTAAAGATTC+CGG | + | chr6_1:16785019-16785038 | None:intergenic | 40.0% | |
| GAGTTCCAACACAGTTTGAT+CGG | + | chr6_1:16785037-16785056 | None:intergenic | 40.0% | |
| TGTGAATAAACGGTCTAGGT+TGG | + | chr6_1:16785067-16785086 | None:intergenic | 40.0% | |
| CACAATCAATGTTCGAGGAA+TGG | - | chr6_1:16785083-16785102 | Msa0877360:CDS | 40.0% | |
| TCATGGATTCTTGAGGTCAA+CGG | - | chr6_1:16785191-16785210 | Msa0877360:intron | 40.0% | |
| GATGTCAAAGCACACAGTAT+TGG | - | chr6_1:16785221-16785240 | Msa0877360:intron | 40.0% | |
| TGTCAAAGCACACAGTATTG+GGG | - | chr6_1:16785223-16785242 | Msa0877360:intron | 40.0% | |
| ATATGCAAGACTTGAAGGAG+TGG | - | chr6_1:16785383-16785402 | Msa0877360:CDS | 40.0% | |
| AATGATGCTGAGTTTGTCAC+TGG | - | chr6_1:16785453-16785472 | Msa0877360:CDS | 40.0% | |
| TCTGGTCATAGCTTCATGTT+TGG | + | chr6_1:16784598-16784617 | None:intergenic | 40.0% | |
| AGGCAAAATAGCCATCATCA+CGG | - | chr6_1:16784638-16784657 | Msa0877360:CDS | 40.0% | |
| CTTGAATGCCAAGTTCATCT+TGG | + | chr6_1:16784743-16784762 | None:intergenic | 40.0% | |
| ACACCCTTGAAAGCTAAGAT+AGG | + | chr6_1:16784885-16784904 | None:intergenic | 40.0% | |
| ATCGGTTGGACTAAAGATTC+CGG | + | chr6_1:16785019-16785038 | None:intergenic | 40.0% | |
| GAGTTCCAACACAGTTTGAT+CGG | + | chr6_1:16785037-16785056 | None:intergenic | 40.0% | |
| TGTGAATAAACGGTCTAGGT+TGG | + | chr6_1:16785067-16785086 | None:intergenic | 40.0% | |
| CACAATCAATGTTCGAGGAA+TGG | - | chr6_1:16785083-16785102 | Msa0877360:CDS | 40.0% | |
| TCATGGATTCTTGAGGTCAA+CGG | - | chr6_1:16785191-16785210 | Msa0877360:intron | 40.0% | |
| GATGTCAAAGCACACAGTAT+TGG | - | chr6_1:16785221-16785240 | Msa0877360:intron | 40.0% | |
| TGTCAAAGCACACAGTATTG+GGG | - | chr6_1:16785223-16785242 | Msa0877360:intron | 40.0% | |
| ATATGCAAGACTTGAAGGAG+TGG | - | chr6_1:16785383-16785402 | Msa0877360:CDS | 40.0% | |
| AATGATGCTGAGTTTGTCAC+TGG | - | chr6_1:16785453-16785472 | Msa0877360:CDS | 40.0% | |
| GGCAAAATAGCCATCATCAC+GGG | - | chr6_1:16784639-16784658 | Msa0877360:CDS | 45.0% | |
| AAAATAGCCATCATCACGGG+TGG | - | chr6_1:16784642-16784661 | Msa0877360:CDS | 45.0% | |
| GGATGTCAGCAATCACAACA+TGG | + | chr6_1:16784722-16784741 | None:intergenic | 45.0% | |
| GCTGACATCCAAGATGAACT+TGG | - | chr6_1:16784732-16784751 | Msa0877360:CDS | 45.0% | |
| ATTCAAGTAGCTGCGTCCAT+CGG | - | chr6_1:16784756-16784775 | Msa0877360:CDS | 45.0% | |
| TGGACTAAAGATTCCGGCAT+TGG | + | chr6_1:16785013-16785032 | None:intergenic | 45.0% | |
| TCCAACCGATCAAACTGTGT+TGG | - | chr6_1:16785029-16785048 | Msa0877360:CDS | 45.0% | |
| TCCAACACAGTTTGATCGGT+TGG | + | chr6_1:16785033-16785052 | None:intergenic | 45.0% | |
| ACGGTAGTCATGGATTCTTG+AGG | - | chr6_1:16785184-16785203 | Msa0877360:intron | 45.0% | |
| GTTCACTCTTATTCCGTGTG+CGG | + | chr6_1:16785277-16785296 | None:intergenic | 45.0% | |
| ! | GTCGACGGTGGATTTGTTTA+TGG | - | chr6_1:16785489-16785508 | Msa0877360:CDS | 45.0% |
| GGCAAAATAGCCATCATCAC+GGG | - | chr6_1:16784639-16784658 | Msa0877360:CDS | 45.0% | |
| AAAATAGCCATCATCACGGG+TGG | - | chr6_1:16784642-16784661 | Msa0877360:CDS | 45.0% | |
| GGATGTCAGCAATCACAACA+TGG | + | chr6_1:16784722-16784741 | None:intergenic | 45.0% | |
| GCTGACATCCAAGATGAACT+TGG | - | chr6_1:16784732-16784751 | Msa0877360:CDS | 45.0% | |
| ATTCAAGTAGCTGCGTCCAT+CGG | - | chr6_1:16784756-16784775 | Msa0877360:CDS | 45.0% | |
| TGGACTAAAGATTCCGGCAT+TGG | + | chr6_1:16785013-16785032 | None:intergenic | 45.0% | |
| TCCAACCGATCAAACTGTGT+TGG | - | chr6_1:16785029-16785048 | Msa0877360:CDS | 45.0% | |
| TCCAACACAGTTTGATCGGT+TGG | + | chr6_1:16785033-16785052 | None:intergenic | 45.0% | |
| ACGGTAGTCATGGATTCTTG+AGG | - | chr6_1:16785184-16785203 | Msa0877360:intron | 45.0% | |
| GTTCACTCTTATTCCGTGTG+CGG | + | chr6_1:16785277-16785296 | None:intergenic | 45.0% | |
| ! | GTCGACGGTGGATTTGTTTA+TGG | - | chr6_1:16785489-16785508 | Msa0877360:CDS | 45.0% |
| ! | GTCTTTGCTAACGAAGGCGT+CGG | - | chr6_1:16784696-16784715 | Msa0877360:CDS | 50.0% |
| AGTGGATGTAGGTGCACCTT+TGG | + | chr6_1:16784785-16784804 | None:intergenic | 50.0% | |
| CACCTACATCCACTGTGATG+TGG | - | chr6_1:16784791-16784810 | Msa0877360:CDS | 50.0% | |
| TGCCACATCACAGTGGATGT+AGG | + | chr6_1:16784796-16784815 | None:intergenic | 50.0% | |
| !! | TAGGGGGAGTATTGTGTGCA+CGG | - | chr6_1:16785152-16785171 | Msa0877360:intron | 50.0% |
| !! | AAAGGTGTCGCGAGTCCATT+CGG | + | chr6_1:16785309-16785328 | None:intergenic | 50.0% |
| TTTAGGGGTGAGTGAGGAGA+AGG | - | chr6_1:16785341-16785360 | Msa0877360:CDS | 50.0% | |
| ACAGCATCTGCCACATGCTT+AGG | + | chr6_1:16785417-16785436 | None:intergenic | 50.0% | |
| ! | GGCCTTGATCTTAGTGTCGA+CGG | - | chr6_1:16785474-16785493 | Msa0877360:CDS | 50.0% |
| CACCGTCGACACTAAGATCA+AGG | + | chr6_1:16785479-16785498 | None:intergenic | 50.0% | |
| !! | CTTGATCTTAGTGTCGACGG+TGG | - | chr6_1:16785477-16785496 | Msa0877360:CDS | 50.0% |
| ! | GTCTTTGCTAACGAAGGCGT+CGG | - | chr6_1:16784696-16784715 | Msa0877360:CDS | 50.0% |
| AGTGGATGTAGGTGCACCTT+TGG | + | chr6_1:16784785-16784804 | None:intergenic | 50.0% | |
| CACCTACATCCACTGTGATG+TGG | - | chr6_1:16784791-16784810 | Msa0877360:CDS | 50.0% | |
| TGCCACATCACAGTGGATGT+AGG | + | chr6_1:16784796-16784815 | None:intergenic | 50.0% | |
| !! | TAGGGGGAGTATTGTGTGCA+CGG | - | chr6_1:16785152-16785171 | Msa0877360:intron | 50.0% |
| !! | AAAGGTGTCGCGAGTCCATT+CGG | + | chr6_1:16785309-16785328 | None:intergenic | 50.0% |
| TTTAGGGGTGAGTGAGGAGA+AGG | - | chr6_1:16785341-16785360 | Msa0877360:CDS | 50.0% | |
| ACAGCATCTGCCACATGCTT+AGG | + | chr6_1:16785417-16785436 | None:intergenic | 50.0% | |
| ! | GGCCTTGATCTTAGTGTCGA+CGG | - | chr6_1:16785474-16785493 | Msa0877360:CDS | 50.0% |
| CACCGTCGACACTAAGATCA+AGG | + | chr6_1:16785479-16785498 | None:intergenic | 50.0% | |
| !! | CTTGATCTTAGTGTCGACGG+TGG | - | chr6_1:16785477-16785496 | Msa0877360:CDS | 50.0% |
| ACTAGCACCACCCGTGATGA+TGG | + | chr6_1:16784652-16784671 | None:intergenic | 55.0% | |
| ! | ATCATCACGGGTGGTGCTAG+TGG | - | chr6_1:16784651-16784670 | Msa0877360:CDS | 55.0% |
| !! | TAGTGGCATCGGTGAAGCCA+CGG | - | chr6_1:16784668-16784687 | Msa0877360:CDS | 55.0% |
| GCGCGTGTCTTTGCTAACGA+AGG | - | chr6_1:16784690-16784709 | Msa0877360:CDS | 55.0% | |
| CTTCGTCTGCCACATCACAG+TGG | + | chr6_1:16784803-16784822 | None:intergenic | 55.0% | |
| GAAACATGCAGCCCGTGCAA+TGG | - | chr6_1:16785116-16785135 | Msa0877360:intron | 55.0% | |
| !! | AGGGGGAGTATTGTGTGCAC+GGG | - | chr6_1:16785153-16785172 | Msa0877360:intron | 55.0% |
| GTGAACTGTGTCTCGCCGAA+TGG | - | chr6_1:16785291-16785310 | Msa0877360:CDS | 55.0% | |
| GGTGCTCACACCTAAGCATG+TGG | - | chr6_1:16785404-16785423 | Msa0877360:CDS | 55.0% | |
| ACTAGCACCACCCGTGATGA+TGG | + | chr6_1:16784652-16784671 | None:intergenic | 55.0% | |
| ! | ATCATCACGGGTGGTGCTAG+TGG | - | chr6_1:16784651-16784670 | Msa0877360:CDS | 55.0% |
| !! | TAGTGGCATCGGTGAAGCCA+CGG | - | chr6_1:16784668-16784687 | Msa0877360:CDS | 55.0% |
| GCGCGTGTCTTTGCTAACGA+AGG | - | chr6_1:16784690-16784709 | Msa0877360:CDS | 55.0% | |
| CTTCGTCTGCCACATCACAG+TGG | + | chr6_1:16784803-16784822 | None:intergenic | 55.0% | |
| GAAACATGCAGCCCGTGCAA+TGG | - | chr6_1:16785116-16785135 | Msa0877360:intron | 55.0% | |
| !! | AGGGGGAGTATTGTGTGCAC+GGG | - | chr6_1:16785153-16785172 | Msa0877360:intron | 55.0% |
| GTGAACTGTGTCTCGCCGAA+TGG | - | chr6_1:16785291-16785310 | Msa0877360:CDS | 55.0% | |
| GGTGCTCACACCTAAGCATG+TGG | - | chr6_1:16785404-16785423 | Msa0877360:CDS | 55.0% | |
| ! | ACGGGTGGTGCTAGTGGCAT+CGG | - | chr6_1:16784657-16784676 | Msa0877360:CDS | 60.0% |
| GTTAGCAAAGACACGCGCCG+TGG | + | chr6_1:16784688-16784707 | None:intergenic | 60.0% | |
| CTGCGTCCATCGGCAACCAA+AGG | - | chr6_1:16784766-16784785 | Msa0877360:CDS | 60.0% | |
| GGTGCACCTTTGGTTGCCGA+TGG | + | chr6_1:16784775-16784794 | None:intergenic | 60.0% | |
| ACATGCAGCCCGTGCAATGG+TGG | - | chr6_1:16785119-16785138 | Msa0877360:intron | 60.0% | |
| ! | AATGGTGGAGGGGCGCGTTA+GGG | - | chr6_1:16785134-16785153 | Msa0877360:intron | 60.0% |
| !! | GGGGGAGTATTGTGTGCACG+GGG | - | chr6_1:16785154-16785173 | Msa0877360:intron | 60.0% |
| !! | GGGAGTGCTCACGGTAGTCA+TGG | - | chr6_1:16785174-16785193 | Msa0877360:intron | 60.0% |
| GCATGCAACCAGCGTGCAAC+TGG | - | chr6_1:16785251-16785270 | Msa0877360:intron | 60.0% | |
| ! | ACGGGTGGTGCTAGTGGCAT+CGG | - | chr6_1:16784657-16784676 | Msa0877360:CDS | 60.0% |
| GTTAGCAAAGACACGCGCCG+TGG | + | chr6_1:16784688-16784707 | None:intergenic | 60.0% | |
| CTGCGTCCATCGGCAACCAA+AGG | - | chr6_1:16784766-16784785 | Msa0877360:CDS | 60.0% | |
| GGTGCACCTTTGGTTGCCGA+TGG | + | chr6_1:16784775-16784794 | None:intergenic | 60.0% | |
| ACATGCAGCCCGTGCAATGG+TGG | - | chr6_1:16785119-16785138 | Msa0877360:intron | 60.0% | |
| ! | AATGGTGGAGGGGCGCGTTA+GGG | - | chr6_1:16785134-16785153 | Msa0877360:intron | 60.0% |
| !! | GGGGGAGTATTGTGTGCACG+GGG | - | chr6_1:16785154-16785173 | Msa0877360:intron | 60.0% |
| !! | GGGAGTGCTCACGGTAGTCA+TGG | - | chr6_1:16785174-16785193 | Msa0877360:intron | 60.0% |
| GCATGCAACCAGCGTGCAAC+TGG | - | chr6_1:16785251-16785270 | Msa0877360:intron | 60.0% | |
| TGCAGCCCGTGCAATGGTGG+AGG | - | chr6_1:16785122-16785141 | Msa0877360:intron | 65.0% | |
| ! | GCAGCCCGTGCAATGGTGGA+GGG | - | chr6_1:16785123-16785142 | Msa0877360:intron | 65.0% |
| ! | CAGCCCGTGCAATGGTGGAG+GGG | - | chr6_1:16785124-16785143 | Msa0877360:intron | 65.0% |
| ! | CAATGGTGGAGGGGCGCGTT+AGG | - | chr6_1:16785133-16785152 | Msa0877360:intron | 65.0% |
| ! | ATGGTGGAGGGGCGCGTTAG+GGG | - | chr6_1:16785135-16785154 | Msa0877360:intron | 65.0% |
| !! | GTGTGCACGGGGAGTGCTCA+CGG | - | chr6_1:16785165-16785184 | Msa0877360:intron | 65.0% |
| AGCGTGCAACTGGCCGCACA+CGG | - | chr6_1:16785261-16785280 | Msa0877360:CDS | 65.0% | |
| TGCAGCCCGTGCAATGGTGG+AGG | - | chr6_1:16785122-16785141 | Msa0877360:intron | 65.0% | |
| ! | GCAGCCCGTGCAATGGTGGA+GGG | - | chr6_1:16785123-16785142 | Msa0877360:intron | 65.0% |
| ! | CAGCCCGTGCAATGGTGGAG+GGG | - | chr6_1:16785124-16785143 | Msa0877360:intron | 65.0% |
| ! | CAATGGTGGAGGGGCGCGTT+AGG | - | chr6_1:16785133-16785152 | Msa0877360:intron | 65.0% |
| ! | ATGGTGGAGGGGCGCGTTAG+GGG | - | chr6_1:16785135-16785154 | Msa0877360:intron | 65.0% |
| !! | GTGTGCACGGGGAGTGCTCA+CGG | - | chr6_1:16785165-16785184 | Msa0877360:intron | 65.0% |
| AGCGTGCAACTGGCCGCACA+CGG | - | chr6_1:16785261-16785280 | Msa0877360:CDS | 65.0% | |
| GCGCCCCTCCACCATTGCAC+GGG | + | chr6_1:16785130-16785149 | None:intergenic | 70.0% | |
| CGCGCCCCTCCACCATTGCA+CGG | + | chr6_1:16785131-16785150 | None:intergenic | 70.0% | |
| ! | TGGTGGAGGGGCGCGTTAGG+GGG | - | chr6_1:16785136-16785155 | Msa0877360:intron | 70.0% |
| GTGTGCGGCCAGTTGCACGC+TGG | + | chr6_1:16785262-16785281 | None:intergenic | 70.0% | |
| GCGCCCCTCCACCATTGCAC+GGG | + | chr6_1:16785130-16785149 | None:intergenic | 70.0% | |
| CGCGCCCCTCCACCATTGCA+CGG | + | chr6_1:16785131-16785150 | None:intergenic | 70.0% | |
| ! | TGGTGGAGGGGCGCGTTAGG+GGG | - | chr6_1:16785136-16785155 | Msa0877360:intron | 70.0% |
| GTGTGCGGCCAGTTGCACGC+TGG | + | chr6_1:16785262-16785281 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 16784565 | 16785557 | 16784565 | ID=Msa0877360;Name=Msa0877360 |
| chr6_1 | mRNA | 16784565 | 16785557 | 16784565 | ID=Msa0877360-mRNA-1;Parent=Msa0877360;Name=Msa0877360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=44|1|1|1|1|1|2|39|261 |
| chr6_1 | exon | 16784565 | 16785128 | 16784565 | ID=Msa0877360-mRNA-1:exon:4703;Parent=Msa0877360-mRNA-1 |
| chr6_1 | exon | 16785253 | 16785557 | 16785253 | ID=Msa0877360-mRNA-1:exon:4702;Parent=Msa0877360-mRNA-1 |
| chr6_1 | five_prime_UTR | 16785514 | 16785557 | 16785514 | ID=Msa0877360-mRNA-1:five_prime_utr;Parent=Msa0877360-mRNA-1 |
| chr6_1 | CDS | 16785253 | 16785513 | 16785253 | ID=Msa0877360-mRNA-1:cds;Parent=Msa0877360-mRNA-1 |
| chr6_1 | CDS | 16784604 | 16785128 | 16784604 | ID=Msa0877360-mRNA-1:cds;Parent=Msa0877360-mRNA-1 |
| chr6_1 | three_prime_UTR | 16784565 | 16784603 | 16784565 | ID=Msa0877360-mRNA-1:three_prime_utr;Parent=Msa0877360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
