Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887970 | XP_013452255.1 | 90.000 | 110 | 11 | 0 | 25 | 134 | 1 | 110 | 6.25e-65 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887970 | sp|O03982|HIP39_ARATH | 55.714 | 70 | 30 | 1 | 25 | 93 | 1 | 70 | 4.08e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887970 | A0A072UB34 | 90.000 | 110 | 11 | 0 | 25 | 134 | 1 | 110 | 2.98e-65 | 203 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731940 | Msa0887970 | 0.802391 | 5.737051e-49 | -8.615850e-47 |
| Msa0131770 | Msa0887970 | 0.811061 | 8.452599e-51 | -8.615850e-47 |
| Msa0204840 | Msa0887970 | 0.805106 | 1.566770e-49 | -8.615850e-47 |
| Msa0887970 | Msa0967280 | 0.815610 | 8.466453e-52 | -8.615850e-47 |
| Msa0887970 | Msa1121480 | 0.807594 | 4.682641e-50 | -8.615850e-47 |
| Msa0887970 | Msa1121490 | 0.808699 | 2.724208e-50 | -8.615850e-47 |
| Msa0887970 | Msa1147740 | 0.803192 | 3.920290e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887970 | MtrunA17_Chr6g0469541 | 90.000 | 110 | 11 | 0 | 25 | 134 | 1 | 110 | 5.74e-69 | 203 |
| Msa0887970 | MtrunA17_Chr7g0233251 | 75.229 | 109 | 27 | 0 | 25 | 133 | 1 | 109 | 4.22e-57 | 173 |
| Msa0887970 | MtrunA17_Chr7g0233191 | 71.818 | 110 | 31 | 0 | 25 | 134 | 1 | 110 | 8.92e-55 | 167 |
| Msa0887970 | MtrunA17_Chr7g0233201 | 70.909 | 110 | 32 | 0 | 25 | 134 | 1 | 110 | 4.05e-54 | 165 |
| Msa0887970 | MtrunA17_Chr7g0233211 | 70.000 | 110 | 33 | 0 | 25 | 134 | 1 | 110 | 2.72e-53 | 163 |
| Msa0887970 | MtrunA17_Chr7g0233231 | 69.091 | 110 | 34 | 0 | 25 | 134 | 1 | 110 | 4.03e-52 | 160 |
| Msa0887970 | MtrunA17_Chr7g0233181 | 74.757 | 103 | 26 | 0 | 25 | 127 | 1 | 103 | 5.30e-52 | 160 |
| Msa0887970 | MtrunA17_Chr6g0469591 | 58.716 | 109 | 39 | 2 | 25 | 129 | 1 | 107 | 1.62e-32 | 111 |
| Msa0887970 | MtrunA17_Chr6g0469571 | 57.798 | 109 | 40 | 2 | 25 | 129 | 1 | 107 | 2.53e-32 | 110 |
| Msa0887970 | MtrunA17_Chr6g0469551 | 56.881 | 109 | 41 | 2 | 25 | 129 | 1 | 107 | 7.04e-32 | 109 |
| Msa0887970 | MtrunA17_Chr6g0469671 | 62.319 | 69 | 26 | 0 | 25 | 93 | 1 | 69 | 1.89e-27 | 97.8 |
| Msa0887970 | MtrunA17_Chr6g0469651 | 65.217 | 69 | 24 | 0 | 25 | 93 | 1 | 69 | 5.62e-27 | 97.4 |
| Msa0887970 | MtrunA17_Chr6g0469681 | 62.319 | 69 | 26 | 0 | 25 | 93 | 1 | 69 | 1.35e-26 | 96.3 |
| Msa0887970 | MtrunA17_Chr1g0202541 | 62.319 | 69 | 26 | 0 | 25 | 93 | 1 | 69 | 6.30e-26 | 95.1 |
| Msa0887970 | MtrunA17_Chr1g0202561 | 63.768 | 69 | 25 | 0 | 25 | 93 | 1 | 69 | 7.29e-26 | 94.7 |
| Msa0887970 | MtrunA17_Chr8g0387471 | 55.556 | 72 | 32 | 0 | 25 | 96 | 1 | 72 | 8.96e-25 | 91.7 |
| Msa0887970 | MtrunA17_Chr1g0202581 | 59.420 | 69 | 27 | 1 | 25 | 93 | 1 | 68 | 1.63e-22 | 86.3 |
| Msa0887970 | MtrunA17_Chr1g0204291 | 57.971 | 69 | 28 | 1 | 25 | 93 | 1 | 68 | 2.05e-22 | 85.9 |
| Msa0887970 | MtrunA17_Chr1g0202501 | 54.412 | 68 | 31 | 0 | 25 | 92 | 1 | 68 | 2.02e-21 | 83.2 |
| Msa0887970 | MtrunA17_Chr7g0248671 | 54.412 | 68 | 31 | 0 | 25 | 92 | 1 | 68 | 6.19e-21 | 83.2 |
| Msa0887970 | MtrunA17_Chr8g0348361 | 61.702 | 47 | 18 | 0 | 46 | 92 | 22 | 68 | 8.15e-14 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887970 | AT1G01490.1 | 55.714 | 70 | 30 | 1 | 25 | 93 | 1 | 70 | 4.15e-20 | 81.6 |
| Msa0887970 | AT1G01490.2 | 55.714 | 70 | 30 | 1 | 25 | 93 | 1 | 70 | 4.15e-20 | 81.6 |
| Msa0887970 | AT1G01490.4 | 52.632 | 76 | 35 | 1 | 19 | 93 | 22 | 97 | 8.57e-20 | 81.3 |
| Msa0887970 | AT5G52740.1 | 50.000 | 70 | 33 | 1 | 25 | 94 | 1 | 68 | 2.32e-17 | 72.8 |
| Msa0887970 | AT5G52760.1 | 40.187 | 107 | 58 | 4 | 29 | 133 | 7 | 109 | 8.05e-14 | 63.9 |
Find 33 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACAGTGTCCAGCCTTTC+AGG | 0.233115 | 6_1:-51623981 | Msa0887970:intron |
| TCTTTCTTCTCCTCATTTAG+AGG | 0.286030 | 6_1:+51622967 | None:intergenic |
| GGGATGGGAGGGGAGGGTTT+TGG | 0.296206 | 6_1:-51625725 | Msa0887970:CDS |
| TTTGGAGGGGATGGGAGGGG+AGG | 0.343087 | 6_1:-51625732 | None:intergenic |
| TAGTAGTAATCTCGAATATA+AGG | 0.349148 | 6_1:+51622868 | None:intergenic |
| GAGAAGAAACTGACGTTAAC+GGG | 0.351681 | 6_1:-51623060 | Msa0887970:CDS |
| AATGGGTTCATTTGCATTTG+TGG | 0.362031 | 6_1:+51622942 | None:intergenic |
| GAGTTTGGAGGGGATGGGAG+GGG | 0.378375 | 6_1:-51625735 | None:intergenic |
| ACATTGGGAGGAGAGGGCTT+TGG | 0.379962 | 6_1:-51625669 | Msa0887970:CDS |
| GAGAGTTTGGAGGGGATGGG+AGG | 0.391990 | 6_1:-51625737 | None:intergenic |
| TTAACAGAAAGTAGTGTTGA+AGG | 0.397592 | 6_1:-51624042 | Msa0887970:intron |
| AGAGTTTGGAGGGGATGGGA+GGG | 0.422886 | 6_1:-51625736 | None:intergenic |
| TTGGAGGGGATGGGAGGGGA+GGG | 0.426968 | 6_1:-51625731 | None:intergenic |
| TGAGAAGAAACTGACGTTAA+CGG | 0.462715 | 6_1:-51623061 | Msa0887970:CDS |
| TGAAAGAAATAGAAGACATT+GGG | 0.462763 | 6_1:-51625684 | Msa0887970:CDS |
| TTGGGAGGAGAGGGCTTTGG+AGG | 0.482407 | 6_1:-51625666 | Msa0887970:intron |
| TCAAATGACGGAAGTGGAAT+GGG | 0.484078 | 6_1:+51622925 | None:intergenic |
| TTCAAATGACGGAAGTGGAA+TGG | 0.494749 | 6_1:+51622924 | None:intergenic |
| GTATATGTTACCTGAAAGGC+TGG | 0.499301 | 6_1:+51623971 | None:intergenic |
| TAGAAGACATTGGGAGGAGA+GGG | 0.505993 | 6_1:-51625675 | Msa0887970:CDS |
| TAGGATTCAAATGACGGAAG+TGG | 0.521164 | 6_1:+51622919 | None:intergenic |
| GTGAAAGAAATAGAAGACAT+TGG | 0.521193 | 6_1:-51625685 | Msa0887970:CDS |
| TAATCTCGAATATAAGGTGC+TGG | 0.541682 | 6_1:+51622874 | None:intergenic |
| TTCAGTTGGACCTCTAAATG+AGG | 0.554745 | 6_1:-51622977 | Msa0887970:CDS |
| CAAACAGAAGTAGTTTCAGT+TGG | 0.563429 | 6_1:-51622991 | Msa0887970:CDS |
| ATAGAAGACATTGGGAGGAG+AGG | 0.564987 | 6_1:-51625676 | Msa0887970:CDS |
| GGTGTCATCTGATAATAGAA+TGG | 0.565401 | 6_1:+51622895 | None:intergenic |
| AATGGATAGGATTCAAATGA+CGG | 0.583871 | 6_1:+51622913 | None:intergenic |
| AAGAAATAGAAGACATTGGG+AGG | 0.599623 | 6_1:-51625681 | Msa0887970:CDS |
| GGGAGTATATGTTACCTGAA+AGG | 0.601617 | 6_1:+51623967 | None:intergenic |
| AGAAGAAACTGACGTTAACG+GGG | 0.641876 | 6_1:-51623059 | Msa0887970:CDS |
| CATCTGATAATAGAATGGAT+AGG | 0.681841 | 6_1:+51622900 | None:intergenic |
| GAAGAAACTGACGTTAACGG+GGG | 0.769247 | 6_1:-51623058 | Msa0887970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATTATTTAAATTTTTC+GGG | + | chr6_1:51624063-51624082 | None:intergenic | 10.0% |
| !!! | TTGAATTATTTAAATTTTTC+GGG | + | chr6_1:51624063-51624082 | None:intergenic | 10.0% |
| !!! | TTGAATTATTTAAATTTTTC+GGG | + | chr6_1:51624063-51624082 | None:intergenic | 10.0% |
| !!! | TTGAATTATTTAAATTTTTC+GGG | + | chr6_1:51624063-51624082 | None:intergenic | 10.0% |
| !!! | TAGTATTTATTTTTTTAGAT+TGG | + | chr6_1:51625306-51625325 | None:intergenic | 10.0% |
| !! | GTTGAAAATATATAGAAAAA+TGG | + | chr6_1:51623157-51623176 | None:intergenic | 15.0% |
| !! | ATTCATATATTTAAATTCAG+TGG | - | chr6_1:51623887-51623906 | Msa0887970:intron | 15.0% |
| !!! | GTTGATTTTTTAATTTTTTG+GGG | + | chr6_1:51623949-51623968 | None:intergenic | 15.0% |
| !!! | CGTTGATTTTTTAATTTTTT+GGG | + | chr6_1:51623950-51623969 | None:intergenic | 15.0% |
| !!! | TCGTTGATTTTTTAATTTTT+TGG | + | chr6_1:51623951-51623970 | None:intergenic | 15.0% |
| !! | ATTAAAAAATCAACGATTAT+AGG | - | chr6_1:51623955-51623974 | Msa0887970:intron | 15.0% |
| !!! | GTTTTTATACAATTTTATGT+CGG | - | chr6_1:51624102-51624121 | Msa0887970:intron | 15.0% |
| !!! | GCTTTTATACAATTTTATAT+CGG | - | chr6_1:51624216-51624235 | Msa0887970:intron | 15.0% |
| !!! | TAAGAAAAGATTCTTTTTTT+AGG | + | chr6_1:51624742-51624761 | None:intergenic | 15.0% |
| !! | ATTTACGAATTATTTCAAAT+AGG | - | chr6_1:51625367-51625386 | Msa0887970:intron | 15.0% |
| !! | TTAGTTAAAAAGTTGTTTAG+TGG | + | chr6_1:51623283-51623302 | None:intergenic | 20.0% |
| !! | AATTATATAGCACTACTAAT+AGG | - | chr6_1:51623473-51623492 | Msa0887970:intron | 20.0% |
| !!! | ATTATTGATGACAAATGTAA+AGG | + | chr6_1:51623722-51623741 | None:intergenic | 20.0% |
| !! | AAATGAGAAAAGTGAAAAAA+TGG | + | chr6_1:51623804-51623823 | None:intergenic | 20.0% |
| !!! | ATTTTTTAATTTTTTGGGGT+GGG | + | chr6_1:51623945-51623964 | None:intergenic | 20.0% |
| !!! | ATTATTTAAATTTTTCGGGT+GGG | + | chr6_1:51624059-51624078 | None:intergenic | 20.0% |
| !!! | AATTATTTAAATTTTTCGGG+TGG | + | chr6_1:51624060-51624079 | None:intergenic | 20.0% |
| !!! | AATTATTTAAATTTTTCGGG+TGG | + | chr6_1:51624060-51624079 | None:intergenic | 20.0% |
| !!! | TACAATTTTATATCGGTTTT+AGG | - | chr6_1:51624223-51624242 | Msa0887970:intron | 20.0% |
| !!! | AATTATTTAAATTTTTCGGG+TGG | + | chr6_1:51624060-51624079 | None:intergenic | 20.0% |
| !!! | GCTTTTATACAATTTTATGT+CGG | - | chr6_1:51624330-51624349 | Msa0887970:intron | 20.0% |
| !!! | ATTATTTAAATTTTTCGGGT+AGG | + | chr6_1:51624059-51624078 | None:intergenic | 20.0% |
| !! | ATAATTCAATTATAGGTCTA+TGG | - | chr6_1:51624074-51624093 | Msa0887970:intron | 20.0% |
| !!! | TTATATCTATTTTTAAACCG+TGG | + | chr6_1:51624483-51624502 | None:intergenic | 20.0% |
| !!! | TAAGAAAAGATTCCTTTTTT+AGG | - | chr6_1:51624653-51624672 | Msa0887970:intron | 20.0% |
| !! | TTATTCAATGAACCTAAAAA+AGG | + | chr6_1:51624668-51624687 | None:intergenic | 20.0% |
| !! | TTTATTTATTGACAAATCCA+CGG | + | chr6_1:51624986-51625005 | None:intergenic | 20.0% |
| !! | TAAATAAAAACAAGAGAAAC+CGG | - | chr6_1:51625002-51625021 | Msa0887970:intron | 20.0% |
| ! | TGAAAGAAATAGAAGACATT+GGG | - | chr6_1:51622899-51622918 | Msa0887970:CDS | 25.0% |
| !!! | TTAATCCTATTTTAAGCAAG+TGG | + | chr6_1:51623323-51623342 | None:intergenic | 25.0% |
| !! | TGCAAACTTTTATCATTTGA+CGG | - | chr6_1:51623357-51623376 | Msa0887970:intron | 25.0% |
| !! | AGTAGTGCTATATAATTTGT+CGG | + | chr6_1:51623470-51623489 | None:intergenic | 25.0% |
| ! | AATGTAAAGGATTTCAAAAG+AGG | + | chr6_1:51623709-51623728 | None:intergenic | 25.0% |
| ! | TCATTATTGTTGAGGTTTAT+GGG | + | chr6_1:51623757-51623776 | None:intergenic | 25.0% |
| ! | TTCATTATTGTTGAGGTTTA+TGG | + | chr6_1:51623758-51623777 | None:intergenic | 25.0% |
| ! | ATAAACCTCAACAATAATGA+AGG | - | chr6_1:51623757-51623776 | Msa0887970:intron | 25.0% |
| !! | TTTTACCTTCATTATTGTTG+AGG | + | chr6_1:51623765-51623784 | None:intergenic | 25.0% |
| ! | CATATATTTAAATTCAGTGG+CGG | - | chr6_1:51623890-51623909 | Msa0887970:intron | 25.0% |
| !!! | GATTTTTTAATTTTTTGGGG+TGG | + | chr6_1:51623946-51623965 | None:intergenic | 25.0% |
| !!! | ATTGTGTCAGTTTTAGATTT+CGG | - | chr6_1:51624001-51624020 | Msa0887970:CDS | 25.0% |
| !!! | TACAATTTTATGTCGGTTTT+AGG | - | chr6_1:51624109-51624128 | Msa0887970:intron | 25.0% |
| !!! | TTTATATCGGTTTTAGGTTT+CGG | - | chr6_1:51624229-51624248 | Msa0887970:intron | 25.0% |
| !!! | TACAATTTTATGTCGGTTTT+AGG | - | chr6_1:51624109-51624128 | Msa0887970:intron | 25.0% |
| !! | AGGTCTATGGTTAATTTTAA+TGG | - | chr6_1:51624429-51624448 | Msa0887970:intron | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | + | chr6_1:51624752-51624771 | None:intergenic | 25.0% |
| ! | ATGTATTTGCTTTACAATGT+AGG | - | chr6_1:51624691-51624710 | Msa0887970:intron | 25.0% |
| ! | AATGAATCCTTCATGTAATA+TGG | + | chr6_1:51625451-51625470 | None:intergenic | 25.0% |
| !! | TTTTTCCTTATCAATATTGC+AGG | - | chr6_1:51625472-51625491 | Msa0887970:intron | 25.0% |
| !! | TTTTCCTTATCAATATTGCA+GGG | - | chr6_1:51625473-51625492 | Msa0887970:intron | 25.0% |
| ! | TAGTAGTAATCTCGAATATA+AGG | + | chr6_1:51625718-51625737 | None:intergenic | 25.0% |
| GTGAAAGAAATAGAAGACAT+TGG | - | chr6_1:51622898-51622917 | Msa0887970:CDS | 30.0% | |
| TGATATGAATTATGAAGCCA+CGG | - | chr6_1:51623252-51623271 | Msa0887970:intron | 30.0% | |
| TAGTACCACTTGCTTAAAAT+AGG | - | chr6_1:51623315-51623334 | Msa0887970:intron | 30.0% | |
| TAAAAGTTTGCAACGATTGA+AGG | + | chr6_1:51623349-51623368 | None:intergenic | 30.0% | |
| AGTTCACACGGTTATAAAAT+AGG | - | chr6_1:51623429-51623448 | Msa0887970:intron | 30.0% | |
| ! | GTAGTGCTATATAATTTGTC+GGG | + | chr6_1:51623469-51623488 | None:intergenic | 30.0% |
| !!! | TTTATGTCGGTTTTAGGTTT+CGG | - | chr6_1:51624115-51624134 | Msa0887970:intron | 30.0% |
| !!! | TTTATGTCGGTTTTAGGTTT+CGG | - | chr6_1:51624115-51624134 | Msa0887970:intron | 30.0% |
| GGAGCTAGAAAAAAAAGTTA+GGG | + | chr6_1:51624459-51624478 | None:intergenic | 30.0% | |
| !!! | TATCTATTTTTAAACCGTGG+CGG | + | chr6_1:51624480-51624499 | None:intergenic | 30.0% |
| ! | TTAACAGAAAGTAGTGTTGA+AGG | - | chr6_1:51624541-51624560 | Msa0887970:intron | 30.0% |
| ! | TGTCTTCATAACTTTTTGCT+TGG | + | chr6_1:51624588-51624607 | None:intergenic | 30.0% |
| AGTACTACTACAAAGTAATG+TGG | - | chr6_1:51624785-51624804 | Msa0887970:intron | 30.0% | |
| TATTACGAGAACATTTGATG+TGG | + | chr6_1:51625049-51625068 | None:intergenic | 30.0% | |
| ATTTGCATTCACAAATGACA+TGG | + | chr6_1:51625400-51625419 | None:intergenic | 30.0% | |
| ACACAAACCATATTACATGA+AGG | - | chr6_1:51625441-51625460 | Msa0887970:intron | 30.0% | |
| TTTCCTTATCAATATTGCAG+GGG | - | chr6_1:51625474-51625493 | Msa0887970:intron | 30.0% | |
| !! | AGTTTAGACACTACTTTTAC+AGG | + | chr6_1:51625559-51625578 | None:intergenic | 30.0% |
| AATGGATAGGATTCAAATGA+CGG | + | chr6_1:51625673-51625692 | None:intergenic | 30.0% | |
| CATCTGATAATAGAATGGAT+AGG | + | chr6_1:51625686-51625705 | None:intergenic | 30.0% | |
| AAGAAATAGAAGACATTGGG+AGG | - | chr6_1:51622902-51622921 | Msa0887970:CDS | 35.0% | |
| AAGAAAAAATCCCCCTCATT+TGG | - | chr6_1:51622956-51622975 | Msa0887970:CDS | 35.0% | |
| AGAAAAAATCCCCCTCATTT+GGG | - | chr6_1:51622957-51622976 | Msa0887970:CDS | 35.0% | |
| GGGAACTCAAAAATTGCATT+GGG | - | chr6_1:51622979-51622998 | Msa0887970:CDS | 35.0% | |
| GGAACTCAAAAATTGCATTG+GGG | - | chr6_1:51622980-51622999 | Msa0887970:CDS | 35.0% | |
| GAACTCAAAAATTGCATTGG+GGG | - | chr6_1:51622981-51623000 | Msa0887970:CDS | 35.0% | |
| ! | TTAGACTTTGGAAGTTTGGA+GGG | + | chr6_1:51623203-51623222 | None:intergenic | 35.0% |
| TAATGTTCACACAGTTCACA+CGG | - | chr6_1:51623417-51623436 | Msa0887970:intron | 35.0% | |
| AAAGACATAGTCAAGTCAAC+TGG | + | chr6_1:51623576-51623595 | None:intergenic | 35.0% | |
| GTGGTGATATTGATGAAGTA+AGG | + | chr6_1:51623632-51623651 | None:intergenic | 35.0% | |
| !! | AGTGAATTGTTTTCTAGCAG+TGG | + | chr6_1:51623656-51623675 | None:intergenic | 35.0% |
| TACATCACTTTGCGGAAATT+TGG | + | chr6_1:51624032-51624051 | None:intergenic | 35.0% | |
| GCTAGAAAAAAAAGTTAGGG+TGG | + | chr6_1:51624456-51624475 | None:intergenic | 35.0% | |
| CGGAGCTAGAAAAAAAAGTT+AGG | + | chr6_1:51624460-51624479 | None:intergenic | 35.0% | |
| ! | TTCTTATATTTGAGACCGGA+GGG | + | chr6_1:51624639-51624658 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | + | chr6_1:51624640-51624659 | None:intergenic | 35.0% |
| GTAAAATAAGAGAGAAACCG+TGG | - | chr6_1:51624966-51624985 | Msa0887970:intron | 35.0% | |
| ATAAAAACAAGAGAAACCGG+TGG | - | chr6_1:51625005-51625024 | Msa0887970:intron | 35.0% | |
| TAAAAACAAGAGAAACCGGT+GGG | - | chr6_1:51625006-51625025 | Msa0887970:intron | 35.0% | |
| TGAGAAGAAACTGACGTTAA+CGG | - | chr6_1:51625522-51625541 | Msa0887970:intron | 35.0% | |
| CAAACAGAAGTAGTTTCAGT+TGG | - | chr6_1:51625592-51625611 | Msa0887970:intron | 35.0% | |
| TCTTTCTTCTCCTCATTTAG+AGG | + | chr6_1:51625619-51625638 | None:intergenic | 35.0% | |
| ! | AATGGGTTCATTTGCATTTG+TGG | + | chr6_1:51625644-51625663 | None:intergenic | 35.0% |
| ! | GGTGTCATCTGATAATAGAA+TGG | + | chr6_1:51625691-51625710 | None:intergenic | 35.0% |
| TAATCTCGAATATAAGGTGC+TGG | + | chr6_1:51625712-51625731 | None:intergenic | 35.0% | |
| !!! | GAGGGTTTTGGAAAAAAGGA+AGG | - | chr6_1:51622870-51622889 | Msa0887970:CDS | 40.0% |
| GAAAAAATCCCCCTCATTTG+GGG | - | chr6_1:51622958-51622977 | Msa0887970:CDS | 40.0% | |
| AAAAAATCCCCCTCATTTGG+GGG | - | chr6_1:51622959-51622978 | Msa0887970:CDS | 40.0% | |
| !!! | TTTTGAGTTCCCCCAAATGA+GGG | + | chr6_1:51622971-51622990 | None:intergenic | 40.0% |
| !!! | TTTTTGAGTTCCCCCAAATG+AGG | + | chr6_1:51622972-51622991 | None:intergenic | 40.0% |
| GGGGAACTCAAAAATTGCAT+TGG | - | chr6_1:51622978-51622997 | Msa0887970:CDS | 40.0% | |
| ! | TAGACTTTGGAAGTTTGGAG+GGG | + | chr6_1:51623202-51623221 | None:intergenic | 40.0% |
| ! | CTTAGACTTTGGAAGTTTGG+AGG | + | chr6_1:51623204-51623223 | None:intergenic | 40.0% |
| ! | CGTCTTAGACTTTGGAAGTT+TGG | + | chr6_1:51623207-51623226 | None:intergenic | 40.0% |
| GAAACACACGTCTTAGACTT+TGG | + | chr6_1:51623215-51623234 | None:intergenic | 40.0% | |
| GCAAGTGGTACTAGAAAAGT+AGG | + | chr6_1:51623308-51623327 | None:intergenic | 40.0% | |
| !! | ATTGTTTTCTAGCAGTGGAG+TGG | + | chr6_1:51623651-51623670 | None:intergenic | 40.0% |
| ATTTCCGCAAAGTGATGTAG+TGG | - | chr6_1:51624033-51624052 | Msa0887970:CDS | 40.0% | |
| !!! | ATATCGGTTTTAGGTTTCGG+TGG | - | chr6_1:51624232-51624251 | Msa0887970:intron | 40.0% |
| ATTCCCGCAAAGTAATGTAG+TGG | - | chr6_1:51624375-51624394 | Msa0887970:intron | 40.0% | |
| TAGGCCACTACATTACTTTG+CGG | + | chr6_1:51624382-51624401 | None:intergenic | 40.0% | |
| !!! | TTTTTTTTCTAGCTCCGCCA+CGG | - | chr6_1:51624463-51624482 | Msa0887970:intron | 40.0% |
| GTATATGTTACCTGAAAGGC+TGG | + | chr6_1:51624615-51624634 | None:intergenic | 40.0% | |
| ! | GGGAGTATATGTTACCTGAA+AGG | + | chr6_1:51624619-51624638 | None:intergenic | 40.0% |
| CAACCCCTGCAATATTGATA+AGG | + | chr6_1:51625480-51625499 | None:intergenic | 40.0% | |
| GAGAAGAAACTGACGTTAAC+GGG | - | chr6_1:51625523-51625542 | Msa0887970:intron | 40.0% | |
| AGAAGAAACTGACGTTAACG+GGG | - | chr6_1:51625524-51625543 | Msa0887970:intron | 40.0% | |
| TTCAGTTGGACCTCTAAATG+AGG | - | chr6_1:51625606-51625625 | Msa0887970:intron | 40.0% | |
| ! | TCAAATGACGGAAGTGGAAT+GGG | + | chr6_1:51625661-51625680 | None:intergenic | 40.0% |
| ! | TTCAAATGACGGAAGTGGAA+TGG | + | chr6_1:51625662-51625681 | None:intergenic | 40.0% |
| ! | TAGGATTCAAATGACGGAAG+TGG | + | chr6_1:51625667-51625686 | None:intergenic | 40.0% |
| !!! | AGGGGAGGGTTTTGGAAAAA+AGG | - | chr6_1:51622866-51622885 | Msa0887970:CDS | 45.0% |
| ATAGAAGACATTGGGAGGAG+AGG | - | chr6_1:51622907-51622926 | Msa0887970:CDS | 45.0% | |
| TAGAAGACATTGGGAGGAGA+GGG | - | chr6_1:51622908-51622927 | Msa0887970:CDS | 45.0% | |
| ! | TTTGAGTTCCCCCAAATGAG+GGG | + | chr6_1:51622970-51622989 | None:intergenic | 45.0% |
| CTCAAAAATTGCATTGGGGG+AGG | - | chr6_1:51622984-51623003 | Msa0887970:CDS | 45.0% | |
| ! | ATTGCATTGGGGGAGGATTT+TGG | - | chr6_1:51622991-51623010 | Msa0887970:CDS | 45.0% |
| ! | TTGCATTGGGGGAGGATTTT+GGG | - | chr6_1:51622992-51623011 | Msa0887970:CDS | 45.0% |
| !! | AGGATTTTGGGGGTTATGGA+GGG | - | chr6_1:51623004-51623023 | Msa0887970:CDS | 45.0% |
| TTTGGAAGTTTGGAGGGGAA+GGG | + | chr6_1:51623197-51623216 | None:intergenic | 45.0% | |
| ATCACACTCACGACGAAAGA+GGG | + | chr6_1:51623386-51623405 | None:intergenic | 45.0% | |
| AGTCAAGTCAACTGGTCAAG+TGG | + | chr6_1:51623568-51623587 | None:intergenic | 45.0% | |
| !!! | ATGTCGGTTTTAGGTTTCGG+TGG | - | chr6_1:51624118-51624137 | Msa0887970:intron | 45.0% |
| ATTCCCGCAAAGTGATGTAG+TGG | - | chr6_1:51624147-51624166 | Msa0887970:intron | 45.0% | |
| TGGACCACTACATCACTTTG+CGG | + | chr6_1:51624154-51624173 | None:intergenic | 45.0% | |
| ATTCCCGCAAAGTGATGTAG+TGG | - | chr6_1:51624147-51624166 | Msa0887970:intron | 45.0% | |
| TGGACCACTACATCACTTTG+CGG | + | chr6_1:51624154-51624173 | None:intergenic | 45.0% | |
| AGGCCACTACATTACTTTGC+GGG | + | chr6_1:51624381-51624400 | None:intergenic | 45.0% | |
| CAGGTAACATATACTCCCTC+CGG | - | chr6_1:51624621-51624640 | Msa0887970:intron | 45.0% | |
| AATCACGTGATCAAACCCAC+CGG | + | chr6_1:51625024-51625043 | None:intergenic | 45.0% | |
| GAAGAAACTGACGTTAACGG+GGG | - | chr6_1:51625525-51625544 | Msa0887970:intron | 45.0% | |
| !!! | ATTGAATTATTTAAATTTTT+CGG | + | chr6_1:51624064-51624083 | None:intergenic | 5.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr6_1:51624067-51624086 | Msa0887970:intron | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+CGG | + | chr6_1:51624064-51624083 | None:intergenic | 5.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr6_1:51624067-51624086 | Msa0887970:intron | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+CGG | + | chr6_1:51624064-51624083 | None:intergenic | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+CGG | + | chr6_1:51624064-51624083 | None:intergenic | 5.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr6_1:51624067-51624086 | Msa0887970:intron | 5.0% |
| !! | TTAAAAATAGATATAATTAT+CGG | - | chr6_1:51624487-51624506 | Msa0887970:intron | 5.0% |
| TTGAGTTCCCCCAAATGAGG+GGG | + | chr6_1:51622969-51622988 | None:intergenic | 50.0% | |
| ! | TGCATTGGGGGAGGATTTTG+GGG | - | chr6_1:51622993-51623012 | Msa0887970:CDS | 50.0% |
| !! | GAGGATTTTGGGGGTTATGG+AGG | - | chr6_1:51623003-51623022 | Msa0887970:CDS | 50.0% |
| ! | CTTTGGAAGTTTGGAGGGGA+AGG | + | chr6_1:51623198-51623217 | None:intergenic | 50.0% |
| GTTGTTTAGTGGTTGCTCCG+TGG | + | chr6_1:51623272-51623291 | None:intergenic | 50.0% | |
| CATCACACTCACGACGAAAG+AGG | + | chr6_1:51623387-51623406 | None:intergenic | 50.0% | |
| !!! | TAATTTTTTGGGGTGGGCCG+TGG | + | chr6_1:51623939-51623958 | None:intergenic | 50.0% |
| TGGGCCACTACATCACTTTG+CGG | + | chr6_1:51624040-51624059 | None:intergenic | 50.0% | |
| GGACCACTACATCACTTTGC+GGG | + | chr6_1:51624153-51624172 | None:intergenic | 50.0% | |
| GGACCACTACATCACTTTGC+GGG | + | chr6_1:51624153-51624172 | None:intergenic | 50.0% | |
| AAGACAGTGTCCAGCCTTTC+AGG | - | chr6_1:51624602-51624621 | Msa0887970:intron | 50.0% | |
| ACATTGGGAGGAGAGGGCTT+TGG | - | chr6_1:51622914-51622933 | Msa0887970:CDS | 55.0% | |
| ! | GCATTGGGGGAGGATTTTGG+GGG | - | chr6_1:51622994-51623013 | Msa0887970:CDS | 55.0% |
| !! | GGGGAGGATTTTGGGGGTTA+TGG | - | chr6_1:51623000-51623019 | Msa0887970:CDS | 55.0% |
| AAGTTTGGAGGGGAAGGGAG+GGG | + | chr6_1:51623192-51623211 | None:intergenic | 55.0% | |
| GAAGTTTGGAGGGGAAGGGA+GGG | + | chr6_1:51623193-51623212 | None:intergenic | 55.0% | |
| ! | AGCCCTTCATGGGTTGAGGT+GGG | - | chr6_1:51623913-51623932 | Msa0887970:intron | 55.0% |
| ! | TTGGGAGGAGAGGGCTTTGG+AGG | - | chr6_1:51622917-51622936 | Msa0887970:CDS | 60.0% |
| GGAAGTTTGGAGGGGAAGGG+AGG | + | chr6_1:51623194-51623213 | None:intergenic | 60.0% | |
| ! | TTCAGTGGCGGAGCCCTTCA+TGG | - | chr6_1:51623902-51623921 | Msa0887970:intron | 60.0% |
| ! | TCAGTGGCGGAGCCCTTCAT+GGG | - | chr6_1:51623903-51623922 | Msa0887970:intron | 60.0% |
| ! | GAGCCCTTCATGGGTTGAGG+TGG | - | chr6_1:51623912-51623931 | Msa0887970:intron | 60.0% |
| GGCCCACCTCAACCCATGAA+GGG | + | chr6_1:51623918-51623937 | None:intergenic | 60.0% | |
| TGGCCCACCTCAACCCATGA+AGG | + | chr6_1:51623919-51623938 | None:intergenic | 60.0% | |
| ! | TCATGGGTTGAGGTGGGCCA+CGG | - | chr6_1:51623919-51623938 | Msa0887970:intron | 60.0% |
| ! | AAGGGAGGGGAGGGCTTTGG+GGG | + | chr6_1:51623179-51623198 | None:intergenic | 65.0% |
| GAAGGGAGGGGAGGGCTTTG+GGG | + | chr6_1:51623180-51623199 | None:intergenic | 65.0% | |
| GGAAGGGAGGGGAGGGCTTT+GGG | + | chr6_1:51623181-51623200 | None:intergenic | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+GGG | + | chr6_1:51623188-51623207 | None:intergenic | 65.0% | |
| TTTGGAGGGGAAGGGAGGGG+AGG | + | chr6_1:51623189-51623208 | None:intergenic | 65.0% | |
| ! | GCGGAGCCCTTCATGGGTTG+AGG | - | chr6_1:51623909-51623928 | Msa0887970:intron | 65.0% |
| GGGAAGGGAGGGGAGGGCTT+TGG | + | chr6_1:51623182-51623201 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 51622861 | 51625744 | 51622861 | ID=Msa0887970;Name=Msa0887970 |
| chr6_1 | mRNA | 51622861 | 51625744 | 51622861 | ID=Msa0887970-mRNA-1;Parent=Msa0887970;Name=Msa0887970-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.5|0.33|0.66|1|1|3|0|134 |
| chr6_1 | exon | 51625667 | 51625744 | 51625667 | ID=Msa0887970-mRNA-1:exon:10443;Parent=Msa0887970-mRNA-1 |
| chr6_1 | exon | 51623982 | 51624057 | 51623982 | ID=Msa0887970-mRNA-1:exon:10442;Parent=Msa0887970-mRNA-1 |
| chr6_1 | exon | 51622861 | 51623111 | 51622861 | ID=Msa0887970-mRNA-1:exon:10441;Parent=Msa0887970-mRNA-1 |
| chr6_1 | CDS | 51625667 | 51625744 | 51625667 | ID=Msa0887970-mRNA-1:cds;Parent=Msa0887970-mRNA-1 |
| chr6_1 | CDS | 51623982 | 51624057 | 51623982 | ID=Msa0887970-mRNA-1:cds;Parent=Msa0887970-mRNA-1 |
| chr6_1 | CDS | 51622861 | 51623111 | 51622861 | ID=Msa0887970-mRNA-1:cds;Parent=Msa0887970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
