AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0131770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131770 MtrunA17_Chr6g0469931 62.348 247 81 4 1 241 1 241 2.10e-96 309
Msa0131770 MtrunA17_Chr6g0469811 59.124 137 56 0 2 138 11 147 9.80e-55 183
Msa0131770 MtrunA17_Chr2g0279021 32.472 271 181 2 160 428 1 271 7.93e-48 172
Msa0131770 MtrunA17_Chr4g0077081 44.853 136 68 1 241 376 27 155 3.55e-35 130
Msa0131770 MtrunA17_Chr7g0259081 41.566 166 96 1 8 173 8 172 8.26e-35 129
Msa0131770 MtrunA17_Chr7g0234721 39.884 173 103 1 1 173 1 172 4.85e-33 127
Msa0131770 MtrunA17_Chr3g0093401 33.058 242 155 2 1 242 1 235 5.21e-33 126
Msa0131770 MtrunA17_Chr4g0010241 40.559 143 85 0 51 193 70 212 1.72e-28 113
Msa0131770 MtrunA17_Chr8g0374181 36.620 142 89 1 288 428 12 153 1.42e-27 112
Msa0131770 MtrunA17_Chr1g0206481 25.641 234 171 3 11 242 11 243 5.89e-24 102
Msa0131770 MtrunA17_Chr2g0278111 24.806 258 191 3 14 269 14 270 5.93e-24 103
Msa0131770 MtrunA17_Chr5g0411141 24.806 258 191 3 14 269 15 271 6.51e-24 102
Msa0131770 MtrunA17_Chr5g0423441 25.991 227 165 3 14 238 14 239 3.39e-23 99.4
Msa0131770 MtrunA17_Chr4g0019691 30.822 146 96 2 286 428 18 161 5.98e-22 94.0
Msa0131770 MtrunA17_Chr2g0280031 25.991 227 158 4 22 238 3 229 8.08e-22 95.5
Msa0131770 MtrunA17_Chr1g0193821 32.961 179 96 1 62 240 2 156 1.09e-21 94.7
Msa0131770 MtrunA17_Chr5g0421841 27.136 199 141 4 14 210 14 210 4.18e-21 92.0
Msa0131770 MtrunA17_Chr2g0309041 50.000 96 48 0 44 139 1 96 9.39e-21 87.4
Msa0131770 MtrunA17_Chr7g0270381 29.714 175 113 4 142 315 1 166 7.73e-20 87.4
Msa0131770 MtrunA17_Chr1g0167871 25.245 408 276 15 8 400 213 606 8.28e-20 94.0
Msa0131770 MtrunA17_Chr2g0304851 22.135 384 260 11 1 373 5 360 1.26e-16 82.4
Msa0131770 MtrunA17_Chr2g0304051 36.170 94 58 1 267 360 17 108 7.96e-16 73.9
Msa0131770 MtrunA17_Chr4g0044661 23.265 245 174 6 3 240 9 246 8.61e-15 77.4
Msa0131770 MtrunA17_Chr5g0421741 31.405 121 83 0 14 134 14 134 2.14e-14 71.6
Msa0131770 MtrunA17_Chr1g0148711 31.405 121 83 0 14 134 14 134 2.14e-14 71.6
Msa0131770 MtrunA17_Chr1g0168201 34.746 118 74 2 332 448 15 130 1.49e-13 68.6
Msa0131770 MtrunA17_Chr2g0300361 22.135 384 258 15 13 371 189 556 3.79e-12 69.3
Msa0131770 MtrunA17_Chr6g0471721 30.693 101 70 0 328 428 5 105 2.50e-11 64.3
Msa0131770 MtrunA17_Chr8g0375881 34.343 99 64 1 331 428 1 99 3.42e-11 63.5
Msa0131770 MtrunA17_Chr4g0015041 39.394 66 40 0 144 209 1 66 4.51e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131770 AT1G52950.1 26.330 376 249 9 7 365 9 373 1.09e-38 150
Msa0131770 AT2G05642.1 22.851 442 268 8 19 428 19 419 3.79e-29 122
Msa0131770 AT2G06510.2 22.546 377 254 13 13 365 182 544 1.38e-14 77.4
Msa0131770 AT2G06510.1 22.546 377 254 13 13 365 205 567 1.71e-14 77.4
Msa0131770 AT4G19130.1 21.410 383 265 13 11 371 234 602 2.81e-13 73.6
Msa0131770 AT4G19130.2 21.410 383 265 13 11 371 235 603 3.10e-13 73.6

Find 161 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGCTGATTATGATTATT+TGG 0.171287 1_3:-62737182 Msa0131770:CDS
TTATGAACACAACTAGAATT+TGG 0.178621 1_3:-62736624 Msa0131770:CDS
ATTTGAAATATCAGCTTATA+TGG 0.194564 1_3:+62737289 None:intergenic
GGGAAGGATGATGTTGTTTA+AGG 0.226381 1_3:-62735825 Msa0131770:CDS
GTTCAACTTTAGCTACTAAT+TGG 0.252527 1_3:+62734279 None:intergenic
GGATGTGAGGCCGTAAGTTT+GGG 0.293152 1_3:-62734757 Msa0131770:CDS
TAGTTGTGTTCATAACATTC+TGG 0.296156 1_3:+62736632 None:intergenic
CTGCTGAGAGAGAGTATGTT+AGG 0.296330 1_3:-62737049 Msa0131770:CDS
TGGATGTGAGGCCGTAAGTT+TGG 0.314992 1_3:-62734758 Msa0131770:CDS
CAGTAATATGCACCAGAATC+AGG 0.344639 1_3:+62736229 None:intergenic
TTTCAGAAGAAGTTGGTAGA+AGG 0.346459 1_3:-62737379 Msa0131770:CDS
AGCCTGATCAGGTTTCAAAA+AGG 0.354626 1_3:+62737616 None:intergenic
GAGAGCTGGGGAAGGATTGC+CGG 0.355817 1_3:-62736834 Msa0131770:CDS
CAGTGTGGGCACAAACTTCT+TGG 0.366360 1_3:+62737200 None:intergenic
CAGGAGATGATGGGGAGAGC+TGG 0.369493 1_3:-62736848 Msa0131770:CDS
AGGAGTGTTACTCCTGATTC+TGG 0.380403 1_3:-62736241 Msa0131770:CDS
AATTATGTGTTGTAGGTATA+AGG 0.382305 1_3:-62736103 Msa0131770:intron
GTTGTGGAAGGTTTGGTTAA+GGG 0.388393 1_3:-62736298 Msa0131770:CDS
CAGAACCTGGATGTGGATCC+TGG 0.394902 1_3:-62734778 Msa0131770:CDS
TATGAACACAACTAGAATTT+GGG 0.398933 1_3:-62736623 Msa0131770:CDS
AAGGTTGAGTGTGCGTTGTT+TGG 0.400585 1_3:-62736890 Msa0131770:CDS
CAGAATTCCTCAATAATAGA+TGG 0.403586 1_3:+62735734 None:intergenic
CAAAATGATACCTCATGAAA+TGG 0.407294 1_3:+62734928 None:intergenic
GCAAATTGAACCACAACAAC+CGG 0.411747 1_3:+62736815 None:intergenic
ATCCATGGCATTGAACCTTC+TGG 0.412452 1_3:-62736448 Msa0131770:CDS
TGAGGTTAGTGGTTTGGTAG+AGG 0.413204 1_3:-62735545 Msa0131770:CDS
CTTCGCTTGGTCCTCGCGTT+AGG 0.417322 1_3:-62736417 Msa0131770:CDS
AATAAAACCTTGGAACCATA+TGG 0.418853 1_3:+62736182 None:intergenic
CTTATATTTGCAGCAGAACC+TGG 0.420798 1_3:-62734791 Msa0131770:intron
AGGAGATGATGGGGAGAGCT+GGG 0.421282 1_3:-62736847 Msa0131770:CDS
GCAGTGTTTGTGATGTTTGA+TGG 0.421830 1_3:-62736048 Msa0131770:CDS
CAGCTCTCCCCATCATCTCC+TGG 0.422859 1_3:+62736849 None:intergenic
TCTGGTGTTGTTCCTTCGCT+TGG 0.423328 1_3:-62736430 Msa0131770:CDS
CAGAAGAAGTTGGTAGAAGG+AGG 0.429595 1_3:-62737376 Msa0131770:CDS
TCAACAGAATTAGCCTGATC+AGG 0.430135 1_3:+62737605 None:intergenic
GTCTCAGACACATGACCAAC+TGG 0.432162 1_3:+62734973 None:intergenic
TGTGTCTCCTCAACAACCTC+AGG 0.434614 1_3:+62735030 None:intergenic
CCTTGATCCATCTATTATTG+AGG 0.436230 1_3:-62735741 Msa0131770:CDS
AATATCATGCAAACAATCAA+TGG 0.436828 1_3:+62737700 None:intergenic
GGTGTCTCTTCAGCAACATC+TGG 0.437831 1_3:+62735520 None:intergenic
TGTTTGCATGATATTGTTCC+TGG 0.438082 1_3:-62737692 Msa0131770:CDS
GGATGGGAAGGTTACTAAGA+TGG 0.439092 1_3:-62737027 Msa0131770:CDS
ATACAACAACTGCCTTCTAA+TGG 0.441497 1_3:+62737405 None:intergenic
CCCTTCAGACTAACAATCTC+AGG 0.442351 1_3:+62735845 None:intergenic
TGTTGTGGAAGGTTTGGTTA+AGG 0.449353 1_3:-62736299 Msa0131770:CDS
CTCTGATGTTGTTGGTTCTG+AGG 0.449695 1_3:-62735563 Msa0131770:CDS
GCTGCAGCTCCTGACATGTC+TGG 0.452331 1_3:+62734709 None:intergenic
GTCGAGAAGACTGCATCTGC+AGG 0.453268 1_3:-62735803 Msa0131770:CDS
AGAAGAAGTTGGTAGAAGGA+GGG 0.455726 1_3:-62737375 Msa0131770:CDS
TGGTGTTTCACTCAGTGGTA+AGG 0.457510 1_3:-62736909 Msa0131770:intron
TGGTTCTGAGGTTAGTGGTT+TGG 0.460911 1_3:-62735551 Msa0131770:CDS
CACATCCAGGATCCACATCC+AGG 0.461386 1_3:+62734773 None:intergenic
TCTGCAGGGGTCATGTTTGA+TGG 0.461394 1_3:-62735788 Msa0131770:CDS
AATGTTGTTGTTACTCCAGT+TGG 0.463124 1_3:-62734988 Msa0131770:CDS
CAATTATGTGCAGATGTTGT+TGG 0.468907 1_3:-62737089 Msa0131770:intron
TTGTGGAAGGTTTGGTTAAG+GGG 0.472061 1_3:-62736297 Msa0131770:CDS
TTTGCAGTTGCCCCTGGTGT+TGG 0.473861 1_3:-62737334 Msa0131770:CDS
TTGCGCTGTTGTGGAAGGTT+TGG 0.473932 1_3:-62736305 Msa0131770:CDS
GCTGATTATGATTATTTGGT+TGG 0.476089 1_3:-62737178 Msa0131770:intron
TCATACTTTGCAGTTGCCCC+TGG 0.477173 1_3:-62737340 Msa0131770:CDS
TGATTCTCTCCAGGAGATGA+TGG 0.477794 1_3:-62736858 Msa0131770:CDS
AGAGTATGTTAGGGATGGGA+AGG 0.479555 1_3:-62737039 Msa0131770:CDS
AGAGAGAGTATGTTAGGGAT+GGG 0.480304 1_3:-62737043 Msa0131770:CDS
GATGTTGTTGGTTTGATGAC+GGG 0.481397 1_3:-62737077 Msa0131770:CDS
GGATGCTGAGTTGAGTGAAT+TGG 0.483193 1_3:-62735061 Msa0131770:CDS
AGATTCATGCTACCATTAGA+AGG 0.485964 1_3:-62737417 Msa0131770:CDS
GAAGAAGTTGGTAGAAGGAG+GGG 0.488168 1_3:-62737374 Msa0131770:CDS
CCTCAATAATAGATGGATCA+AGG 0.491698 1_3:+62735741 None:intergenic
CTCTGTCAGGCTGAAAATGC+GGG 0.492631 1_3:-62735878 Msa0131770:intron
AAGTTGTGAAATTTAGAGAA+GGG 0.495260 1_3:-62736582 Msa0131770:intron
AATGTGCAGTTTGTGTCTGA+TGG 0.498589 1_3:-62735087 Msa0131770:CDS
AAACTTACGGCCTCACATCC+AGG 0.504373 1_3:+62734760 None:intergenic
GAGAGAGAGTATGTTAGGGA+TGG 0.504553 1_3:-62737044 Msa0131770:CDS
CAACTTAGTTTCTGCAGCCA+AGG 0.505104 1_3:-62735992 Msa0131770:intron
GTTGTTGGTTCTGAGGTTAG+TGG 0.505174 1_3:-62735556 Msa0131770:CDS
GAAGTTGTGAAATTTAGAGA+AGG 0.509519 1_3:-62736583 Msa0131770:CDS
TATCAGCTTATATGGATGAA+TGG 0.512952 1_3:+62737297 None:intergenic
ATCAGAGAAAGTCCATGCAC+AGG 0.514979 1_3:+62737229 None:intergenic
TCAGGCTAATTCTGTTGAGA+TGG 0.516511 1_3:-62737600 Msa0131770:CDS
TGTTGAGGAGACACAAATTG+AGG 0.516639 1_3:-62735022 Msa0131770:CDS
ATCCTGCATGTCGTTGTCAT+AGG 0.517357 1_3:-62736261 Msa0131770:CDS
GATTCTCTCCAGGAGATGAT+GGG 0.519972 1_3:-62736857 Msa0131770:CDS
CGTTAGGCCTTCGATTGAAG+AGG 0.523592 1_3:-62736401 Msa0131770:CDS
AAGCTATGTTGATTCTCTCC+AGG 0.524177 1_3:-62736867 Msa0131770:CDS
AATATCAGTGTTGCAATCCA+TGG 0.525062 1_3:-62736463 Msa0131770:intron
CACCAGAAGGTTCAATGCCA+TGG 0.526115 1_3:+62736446 None:intergenic
GGTCATGTGTCTGAGACATC+TGG 0.527265 1_3:-62734967 Msa0131770:CDS
ATGATGGGGAGAGCTGGGGA+AGG 0.529373 1_3:-62736842 Msa0131770:CDS
CATGTCAGGAGCTGCAGCTG+TGG 0.529395 1_3:-62734704 Msa0131770:CDS
ATCCTCCATGACTCTCTACC+AGG 0.529476 1_3:+62737674 None:intergenic
CCTGAGATTGTTAGTCTGAA+GGG 0.531336 1_3:-62735845 Msa0131770:CDS
TTCACAACTTCTTCGAAAGG+AGG 0.531881 1_3:+62736595 None:intergenic
TCCTGAGATTGTTAGTCTGA+AGG 0.533453 1_3:-62735846 Msa0131770:CDS
GGAAGGATTGCCGGTTGTTG+TGG 0.534201 1_3:-62736825 Msa0131770:CDS
TTTAAAAGTCCAGACATGTC+AGG 0.535925 1_3:-62734718 Msa0131770:CDS
TGCTGAGAGAGAGTATGTTA+GGG 0.536407 1_3:-62737048 Msa0131770:CDS
GACACAAATTGAGGATTTCG+TGG 0.538543 1_3:-62735013 Msa0131770:CDS
TTGAATGCCATTGTGGAGGA+TGG 0.542450 1_3:-62736340 Msa0131770:CDS
GTTGTTTGCGCTGTTGTGGA+AGG 0.543951 1_3:-62736310 Msa0131770:CDS
ATGTGTTCCATATGGTTCCA+AGG 0.544519 1_3:-62736189 Msa0131770:intron
TTATGTTGTTTGCGCTGTTG+TGG 0.549199 1_3:-62736314 Msa0131770:CDS
TGTGGAAGGTTTGGTTAAGG+GGG 0.551576 1_3:-62736296 Msa0131770:CDS
ATAAGTATACACACCTTGGC+CGG 0.552491 1_3:+62735499 None:intergenic
TGTGAAGCATGTGTTCCATA+TGG 0.553469 1_3:-62736197 Msa0131770:CDS
TAGAGAGTCATGGAGGATCA+AGG 0.553834 1_3:-62737669 Msa0131770:CDS
AGATGTTGTTGGTTTGATGA+CGG 0.554619 1_3:-62737078 Msa0131770:CDS
GCGAAAATTAAAATATTCCG+AGG 0.559220 1_3:-62736794 Msa0131770:intron
AATTTCACAACTTCTTCGAA+AGG 0.561133 1_3:+62736592 None:intergenic
GGAATTCTGCACTTCTGCCA+AGG 0.561850 1_3:-62735720 Msa0131770:intron
TTCTGGTGCATATTACTGCA+AGG 0.569175 1_3:-62736224 Msa0131770:CDS
CTCCTATGACAACGACATGC+AGG 0.572521 1_3:+62736259 None:intergenic
AAGAAATCCTCTTCAATCGA+AGG 0.574744 1_3:+62736394 None:intergenic
GCAGTTTGTGTCTGATGGTG+TGG 0.575103 1_3:-62735082 Msa0131770:CDS
TATATGGATGAATGGTAGTA+CGG 0.578247 1_3:+62737305 None:intergenic
TTTGCAGCAGAACCTGGATG+TGG 0.581132 1_3:-62734785 Msa0131770:intron
AATGAAGACAAAGGTGGAGA+GGG 0.584507 1_3:-62737269 Msa0131770:CDS
TTGTTCCTGGTAGAGAGTCA+TGG 0.586636 1_3:-62737679 Msa0131770:CDS
TGCTGAAGAGACACCGGCCA+AGG 0.590160 1_3:-62735512 Msa0131770:CDS
TGAATGCCATTGTGGAGGAT+GGG 0.592525 1_3:-62736339 Msa0131770:CDS
GGAGATGATGGGGAGAGCTG+GGG 0.594933 1_3:-62736846 Msa0131770:CDS
TCGAGAAGACTGCATCTGCA+GGG 0.595551 1_3:-62735802 Msa0131770:CDS
GTACGGTATGAACCAACACC+AGG 0.604717 1_3:+62737322 None:intergenic
GTGTCTCCTCAACAACCTCA+GGG 0.605563 1_3:+62735031 None:intergenic
AAATGAAGACAAAGGTGGAG+AGG 0.612097 1_3:-62737270 Msa0131770:CDS
AGATTGTTAGTCTGAAGGGA+AGG 0.612243 1_3:-62735841 Msa0131770:CDS
AAACATCACAAACACTGCAT+CGG 0.613338 1_3:+62736053 None:intergenic
TCTCTGTCAGGCTGAAAATG+CGG 0.615138 1_3:-62735879 Msa0131770:intron
ATAATCATAATCAGCAGTGT+GGG 0.617146 1_3:+62737186 None:intergenic
AGTTCACTTATCCCTGTGCA+TGG 0.617904 1_3:-62737241 Msa0131770:CDS
TGAGGACCCTGAGGTTGTTG+AGG 0.619049 1_3:-62735037 Msa0131770:CDS
AGCGAAGGAACAACACCAGA+AGG 0.623319 1_3:+62736433 None:intergenic
ATTCTCTCCAGGAGATGATG+GGG 0.623487 1_3:-62736856 Msa0131770:CDS
TCAGAGAAAGTCCATGCACA+GGG 0.624214 1_3:+62737230 None:intergenic
GGTGATATGCAAATGTTGCT+TGG 0.625001 1_3:-62736027 Msa0131770:CDS
AGCTAAGAGAAATTTGCGCA+AGG 0.625659 1_3:-62734659 Msa0131770:CDS
AATAATCATAATCAGCAGTG+TGG 0.629057 1_3:+62737185 None:intergenic
CGAGAAGACTGCATCTGCAG+GGG 0.629581 1_3:-62735801 Msa0131770:CDS
ATGTTGTTGGTTTGATGACG+GGG 0.629588 1_3:-62737076 Msa0131770:CDS
ATTTCAAATGAAGACAAAGG+TGG 0.632682 1_3:-62737275 Msa0131770:CDS
GATATTTCAAATGAAGACAA+AGG 0.634663 1_3:-62737278 Msa0131770:CDS
CTAACGCGAGGACCAAGCGA+AGG 0.636906 1_3:+62736418 None:intergenic
CTATGAGTTGAATGCCATTG+TGG 0.639853 1_3:-62736347 Msa0131770:CDS
GGTGCGTGTGCTTAGAATGT+GGG 0.640704 1_3:-62737648 Msa0131770:CDS
AGATGTTGCTGAAGAGACAC+CGG 0.651942 1_3:-62735518 Msa0131770:CDS
GATGTGAGGCCGTAAGTTTG+GGG 0.655968 1_3:-62734756 Msa0131770:CDS
GCTACTAATTGGCAACTCAG+AGG 0.657803 1_3:+62734290 None:intergenic
TCTGGTGCATATTACTGCAA+GGG 0.660196 1_3:-62736223 Msa0131770:CDS
AAATACTGCTCCATTTCATG+AGG 0.667003 1_3:-62734938 Msa0131770:intron
TGAGTTGAGTGAATTGGCTG+AGG 0.671419 1_3:-62735055 Msa0131770:CDS
ATAAATCCCATCCTCCACAA+TGG 0.672201 1_3:+62736333 None:intergenic
TACGGTATGAACCAACACCA+GGG 0.673121 1_3:+62737323 None:intergenic
TTCAGACTAACAATCTCAGG+AGG 0.673353 1_3:+62735848 None:intergenic
ATGTGAGGCCGTAAGTTTGG+GGG 0.680906 1_3:-62734755 Msa0131770:CDS
AGGTGCGTGTGCTTAGAATG+TGG 0.683079 1_3:-62737649 Msa0131770:CDS
TCAATCGAAGGCCTAACGCG+AGG 0.683506 1_3:+62736406 None:intergenic
GGATGTGGATCCTGGATGTG+AGG 0.690644 1_3:-62734770 Msa0131770:CDS
GCGTGTGCTTAGAATGTGGG+AGG 0.703016 1_3:-62737645 Msa0131770:CDS
TGAATTGGCTGAGGACCCTG+AGG 0.710872 1_3:-62735046 Msa0131770:CDS
TGAGTTGAATGCCATTGTGG+AGG 0.719334 1_3:-62736344 Msa0131770:CDS
ACGGTATGAACCAACACCAG+GGG 0.729241 1_3:+62737324 None:intergenic
TTCCTGGTAGAGAGTCATGG+AGG 0.748573 1_3:-62737676 Msa0131770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTATTTTGTCTATT+TGG - chr1_3:62734359-62734378 Msa0131770:intron 10.0%
!!! TTATTTCATTTTTGTAAAAA+TGG + chr1_3:62736669-62736688 None:intergenic 10.0%
!! TATAAATACTTAAACAATAA+AGG + chr1_3:62737434-62737453 None:intergenic 10.0%
!! ACGAATTTAAAAATTAAAAC+TGG + chr1_3:62734797-62734816 None:intergenic 15.0%
!! ATTTCCAAAAAAATATTGTT+AGG - chr1_3:62736689-62736708 Msa0131770:intron 15.0%
!! TTTCCAAAAAAATATTGTTA+GGG - chr1_3:62736690-62736709 Msa0131770:intron 15.0%
!! GGAATAAATAAATAATTATG+AGG - chr1_3:62736736-62736755 Msa0131770:intron 15.0%
!!! ATCAATATATTTTTCAGAAA+AGG + chr1_3:62736762-62736781 None:intergenic 15.0%
!! TCAAAGTAATTTATTATTCA+CGG + chr1_3:62737587-62737606 None:intergenic 15.0%
!!! ATTTGAAATATCAGCTTATA+TGG + chr1_3:62734626-62734645 None:intergenic 20.0%
!!! AAATTATATTAACCCTGTTT+TGG - chr1_3:62734983-62735002 Msa0131770:CDS 20.0%
!! AACTACAAAATGCAAATAAA+CGG + chr1_3:62735167-62735186 None:intergenic 20.0%
!!! TATTTGCATTTTGTAGTTTA+TGG - chr1_3:62735169-62735188 Msa0131770:intron 20.0%
!!! ATTTGCATTTTGTAGTTTAT+GGG - chr1_3:62735170-62735189 Msa0131770:intron 20.0%
!!! AACTCATAGATATTTTTCTT+GGG + chr1_3:62735554-62735573 None:intergenic 20.0%
!! TTATTGTAATTATGTGTTGT+AGG - chr1_3:62735802-62735821 Msa0131770:CDS 20.0%
!! TTGTAAATAAAGACAAAAAC+CGG + chr1_3:62735990-62736009 None:intergenic 20.0%
!!! TTTTTTTAGCATTTGTTGTT+GGG - chr1_3:62736231-62736250 Msa0131770:CDS 20.0%
!!! ATTTTATGTTAGTAATGTTG+AGG - chr1_3:62736449-62736468 Msa0131770:CDS 20.0%
!!! TTTTATGTTAGTAATGTTGA+GGG - chr1_3:62736450-62736469 Msa0131770:CDS 20.0%
!! TTATGATTATGTGCATTAAT+GGG - chr1_3:62736715-62736734 Msa0131770:intron 20.0%
!! AAGAATTTATGCAACAATTA+AGG + chr1_3:62737104-62737123 None:intergenic 20.0%
! AATATCATGCAAACAATCAA+TGG + chr1_3:62734215-62734234 None:intergenic 25.0%
! ATAAATTTCGAGAGTAATAC+AGG + chr1_3:62734406-62734425 None:intergenic 25.0%
! GATATTTCAAATGAAGACAA+AGG - chr1_3:62734634-62734653 Msa0131770:intron 25.0%
! TTTAATGTCTTGACTGTTTA+GGG - chr1_3:62734771-62734790 Msa0131770:CDS 25.0%
! GACAGAAAATTTATAGGAAT+AGG + chr1_3:62735229-62735248 None:intergenic 25.0%
!! ATTCCTATAAATTTTCTGTC+CGG - chr1_3:62735229-62735248 Msa0131770:intron 25.0%
! TTATGAACACAACTAGAATT+TGG - chr1_3:62735288-62735307 Msa0131770:intron 25.0%
! TATGAACACAACTAGAATTT+GGG - chr1_3:62735289-62735308 Msa0131770:intron 25.0%
! AAGTTGTGAAATTTAGAGAA+GGG - chr1_3:62735330-62735349 Msa0131770:intron 25.0%
!! CAACTCATAGATATTTTTCT+TGG + chr1_3:62735555-62735574 None:intergenic 25.0%
! GGTTTAATCTAATAAAACCT+TGG + chr1_3:62735743-62735762 None:intergenic 25.0%
! AATTATGTGTTGTAGGTATA+AGG - chr1_3:62735809-62735828 Msa0131770:CDS 25.0%
! AAATCATCTATAACAAACCT+TGG + chr1_3:62735940-62735959 None:intergenic 25.0%
!!! CTTTTTTTAGCATTTGTTGT+TGG - chr1_3:62736230-62736249 Msa0131770:CDS 25.0%
! GTGTATACTTATTCTATCAA+CGG - chr1_3:62736424-62736443 Msa0131770:CDS 25.0%
!! ATAACTTGGAGAATTTCTTT+TGG - chr1_3:62736479-62736498 Msa0131770:intron 25.0%
!!! TAGGTATTAGATTTAGTTTG+AGG - chr1_3:62736513-62736532 Msa0131770:intron 25.0%
!!! AGGTATTAGATTTAGTTTGA+GGG - chr1_3:62736514-62736533 Msa0131770:intron 25.0%
!!! AACAATTCATGGGTTTTATA+TGG + chr1_3:62736592-62736611 None:intergenic 25.0%
!!! ACTCCCTAACAATATTTTTT+TGG + chr1_3:62736696-62736715 None:intergenic 25.0%
! GTTATGATTATGTGCATTAA+TGG - chr1_3:62736714-62736733 Msa0131770:intron 25.0%
!! TCATTTTGCGTTTATAACTT+TGG - chr1_3:62736999-62737018 Msa0131770:intron 25.0%
! GGGTTTGTACATATTTAAAT+AGG - chr1_3:62737024-62737043 Msa0131770:CDS 25.0%
! TTACAAAGCATAAAGTCTAA+AGG + chr1_3:62737407-62737426 None:intergenic 25.0%
! AACATAGATACTCATACAAT+AGG + chr1_3:62737563-62737582 None:intergenic 25.0%
!! GTATGTTTTTCAGAAGAAGT+TGG - chr1_3:62734526-62734545 Msa0131770:intron 30.0%
TATATGGATGAATGGTAGTA+CGG + chr1_3:62734610-62734629 None:intergenic 30.0%
TATCAGCTTATATGGATGAA+TGG + chr1_3:62734618-62734637 None:intergenic 30.0%
ATTTCAAATGAAGACAAAGG+TGG - chr1_3:62734637-62734656 Msa0131770:intron 30.0%
ATAATCATAATCAGCAGTGT+GGG + chr1_3:62734729-62734748 None:intergenic 30.0%
AATAATCATAATCAGCAGTG+TGG + chr1_3:62734730-62734749 None:intergenic 30.0%
! CACTGCTGATTATGATTATT+TGG - chr1_3:62734730-62734749 Msa0131770:CDS 30.0%
GCTGATTATGATTATTTGGT+TGG - chr1_3:62734734-62734753 Msa0131770:CDS 30.0%
GTTTAATGTCTTGACTGTTT+AGG - chr1_3:62734770-62734789 Msa0131770:CDS 30.0%
GCGAAAATTAAAATATTCCG+AGG - chr1_3:62735118-62735137 Msa0131770:intron 30.0%
AGGATGGAAAATTTATACCT+CGG + chr1_3:62735138-62735157 None:intergenic 30.0%
TTATAGGAATAGGACAGAAA+TGG + chr1_3:62735219-62735238 None:intergenic 30.0%
AAACCGGACAGAAAATTTAT+AGG + chr1_3:62735235-62735254 None:intergenic 30.0%
TAGTTGTGTTCATAACATTC+TGG + chr1_3:62735283-62735302 None:intergenic 30.0%
AATTTCACAACTTCTTCGAA+AGG + chr1_3:62735323-62735342 None:intergenic 30.0%
GAAGTTGTGAAATTTAGAGA+AGG - chr1_3:62735329-62735348 Msa0131770:intron 30.0%
AATAAAACCTTGGAACCATA+TGG + chr1_3:62735733-62735752 None:intergenic 30.0%
! TGTCATTCAACTCTTTTGTA+TGG - chr1_3:62735769-62735788 Msa0131770:CDS 30.0%
! GTCATTCAACTCTTTTGTAT+GGG - chr1_3:62735770-62735789 Msa0131770:CDS 30.0%
! TCATTCAACTCTTTTGTATG+GGG - chr1_3:62735771-62735790 Msa0131770:CDS 30.0%
! TTTGTTATAGATGATTTCCC+TGG - chr1_3:62735943-62735962 Msa0131770:intron 30.0%
!!! ATATTGCTGTGTTTTTTCAC+CGG - chr1_3:62735968-62735987 Msa0131770:intron 30.0%
!! TCATGTTTGATGGATCTTTT+AGG - chr1_3:62736134-62736153 Msa0131770:intron 30.0%
!! CATGTTTGATGGATCTTTTA+GGG - chr1_3:62736135-62736154 Msa0131770:intron 30.0%
CAGAATTCCTCAATAATAGA+TGG + chr1_3:62736181-62736200 None:intergenic 30.0%
CAAATGCTAAAAAAAGACGA+CGG + chr1_3:62736226-62736245 None:intergenic 30.0%
!! TTTAGAAGGGTTTTGATGTA+TGG - chr1_3:62736293-62736312 Msa0131770:CDS 30.0%
TAGAATAAGTATACACACCT+TGG + chr1_3:62736420-62736439 None:intergenic 30.0%
TCTATGCACACTTATTAACT+TGG - chr1_3:62736557-62736576 Msa0131770:intron 30.0%
!! TTCATGGGTTTTATATGGTA+AGG + chr1_3:62736587-62736606 None:intergenic 30.0%
CAAAATGATACCTCATGAAA+TGG + chr1_3:62736987-62737006 None:intergenic 30.0%
TTTGCGTTTATAACTTTGGT+TGG - chr1_3:62737003-62737022 Msa0131770:CDS 30.0%
TTGCGTTTATAACTTTGGTT+GGG - chr1_3:62737004-62737023 Msa0131770:CDS 30.0%
AAGTAGACATGTTGTATTAG+TGG - chr1_3:62737047-62737066 Msa0131770:CDS 30.0%
AACAATTAAGGTCTACATAG+AGG + chr1_3:62737092-62737111 None:intergenic 30.0%
ATTTAGGAAATGGAACATAG+AGG + chr1_3:62737465-62737484 None:intergenic 30.0%
TAGATACTCATACAATAGGT+AGG + chr1_3:62737559-62737578 None:intergenic 30.0%
GTTCAACTTTAGCTACTAAT+TGG + chr1_3:62737636-62737655 None:intergenic 30.0%
! ATCCACATCAAAATTTTGAG+GGG + chr1_3:62737689-62737708 None:intergenic 30.0%
! CATCCACATCAAAATTTTGA+GGG + chr1_3:62737690-62737709 None:intergenic 30.0%
!! AATTTTGATGTGGATGGTTA+TGG - chr1_3:62737694-62737713 Msa0131770:CDS 30.0%
!! ATTTTGATGTGGATGGTTAT+GGG - chr1_3:62737695-62737714 Msa0131770:CDS 30.0%
TGTTTGCATGATATTGTTCC+TGG - chr1_3:62734220-62734239 Msa0131770:CDS 35.0%
GATCAGGTTTCAAAAAGGTT+GGG + chr1_3:62734294-62734313 None:intergenic 35.0%
TGATCAGGTTTCAAAAAGGT+TGG + chr1_3:62734295-62734314 None:intergenic 35.0%
!!! AACCTTTTTGAAACCTGATC+AGG - chr1_3:62734294-62734313 Msa0131770:CDS 35.0%
!!! GATGGTTTTGATTGATGAGA+AGG - chr1_3:62734330-62734349 Msa0131770:intron 35.0%
AGATTCATGCTACCATTAGA+AGG - chr1_3:62734495-62734514 Msa0131770:intron 35.0%
ATACAACAACTGCCTTCTAA+TGG + chr1_3:62734510-62734529 None:intergenic 35.0%
!! TTTCAGAAGAAGTTGGTAGA+AGG - chr1_3:62734533-62734552 Msa0131770:intron 35.0%
CAACAACATCTGCACATAAT+TGG + chr1_3:62734825-62734844 None:intergenic 35.0%
CAATTATGTGCAGATGTTGT+TGG - chr1_3:62734823-62734842 Msa0131770:intron 35.0%
!! AGATGTTGTTGGTTTGATGA+CGG - chr1_3:62734834-62734853 Msa0131770:intron 35.0%
!!! TTTTCGAGTTAACTGACGAA+AGG - chr1_3:62734911-62734930 Msa0131770:intron 35.0%
! TAGATAGCAGTGATTTGTGT+AGG - chr1_3:62734945-62734964 Msa0131770:CDS 35.0%
AAATAAACGGACAAACAGGA+TGG + chr1_3:62735154-62735173 None:intergenic 35.0%
ATGCAAATAAACGGACAAAC+AGG + chr1_3:62735158-62735177 None:intergenic 35.0%
TTTGTAGTTTATGGGTAACG+AGG - chr1_3:62735178-62735197 Msa0131770:intron 35.0%
TTGTAGTTTATGGGTAACGA+GGG - chr1_3:62735179-62735198 Msa0131770:intron 35.0%
CTCTCTGCATATAAACAAAC+CGG + chr1_3:62735251-62735270 None:intergenic 35.0%
! GGTTTGTTTATATGCAGAGA+GGG - chr1_3:62735250-62735269 Msa0131770:intron 35.0%
AATATCAGTGTTGCAATCCA+TGG - chr1_3:62735449-62735468 Msa0131770:intron 35.0%
AAGAAATCCTCTTCAATCGA+AGG + chr1_3:62735521-62735540 None:intergenic 35.0%
AAGAGTTGAATGACAATGAC+AGG + chr1_3:62735764-62735783 None:intergenic 35.0%
AAACATCACAAACACTGCAT+CGG + chr1_3:62735862-62735881 None:intergenic 35.0%
AAAACACAGCAATATCACCA+GGG + chr1_3:62735963-62735982 None:intergenic 35.0%
AAAAACACAGCAATATCACC+AGG + chr1_3:62735964-62735983 None:intergenic 35.0%
!! TTTGATGATGTATCTCTGTC+AGG - chr1_3:62736021-62736040 Msa0131770:CDS 35.0%
CCTCAATAATAGATGGATCA+AGG + chr1_3:62736174-62736193 None:intergenic 35.0%
CCTTGATCCATCTATTATTG+AGG - chr1_3:62736171-62736190 Msa0131770:intron 35.0%
CATCAGAGAAAACCTACAAA+TGG + chr1_3:62736337-62736356 None:intergenic 35.0%
! TAGGTTTTCTCTGATGTTGT+TGG - chr1_3:62736341-62736360 Msa0131770:CDS 35.0%
! GTTGAGGGTGTAATATAACT+TGG - chr1_3:62736465-62736484 Msa0131770:intron 35.0%
TTTGCAGAAGGGAAATAGTT+AGG - chr1_3:62736610-62736629 Msa0131770:CDS 35.0%
! AATGTTGTTGTTACTCCAGT+TGG - chr1_3:62736924-62736943 Msa0131770:intron 35.0%
AAATACTGCTCCATTTCATG+AGG - chr1_3:62736974-62736993 Msa0131770:intron 35.0%
TTTAAAAGTCCAGACATGTC+AGG - chr1_3:62737194-62737213 Msa0131770:CDS 35.0%
AACTCAATCCAGATCAAGTT+TGG + chr1_3:62737333-62737352 None:intergenic 35.0%
GGGTTTATGGGAGTTTATTA+TGG - chr1_3:62737494-62737513 Msa0131770:intron 35.0%
! CCATCCACATCAAAATTTTG+AGG + chr1_3:62737691-62737710 None:intergenic 35.0%
!! CCTCAAAATTTTGATGTGGA+TGG - chr1_3:62737688-62737707 Msa0131770:CDS 35.0%
AGCCTGATCAGGTTTCAAAA+AGG + chr1_3:62734299-62734318 None:intergenic 40.0%
! TCAACAGAATTAGCCTGATC+AGG + chr1_3:62734310-62734329 None:intergenic 40.0%
TCAGGCTAATTCTGTTGAGA+TGG - chr1_3:62734312-62734331 Msa0131770:intron 40.0%
! TCCATTTTCCTTCCTTTCGT+AGG - chr1_3:62734466-62734485 Msa0131770:intron 40.0%
! CCATTTTCCTTCCTTTCGTA+GGG - chr1_3:62734467-62734486 Msa0131770:intron 40.0%
!! AGAAGAAGTTGGTAGAAGGA+GGG - chr1_3:62734537-62734556 Msa0131770:intron 40.0%
AAATGAAGACAAAGGTGGAG+AGG - chr1_3:62734642-62734661 Msa0131770:intron 40.0%
AATGAAGACAAAGGTGGAGA+GGG - chr1_3:62734643-62734662 Msa0131770:intron 40.0%
!! GATGTTGTTGGTTTGATGAC+GGG - chr1_3:62734835-62734854 Msa0131770:intron 40.0%
!! ATGTTGTTGGTTTGATGACG+GGG - chr1_3:62734836-62734855 Msa0131770:intron 40.0%
! TGCTGAGAGAGAGTATGTTA+GGG - chr1_3:62734864-62734883 Msa0131770:intron 40.0%
! AGAGAGAGTATGTTAGGGAT+GGG - chr1_3:62734869-62734888 Msa0131770:intron 40.0%
CTGAGTGAAACACCAAAACA+GGG + chr1_3:62734998-62735017 None:intergenic 40.0%
ACTGAGTGAAACACCAAAAC+AGG + chr1_3:62734999-62735018 None:intergenic 40.0%
!!! TGTTTTGGTGTTTCACTCAG+TGG - chr1_3:62734998-62735017 Msa0131770:CDS 40.0%
!! AAGCTATGTTGATTCTCTCC+AGG - chr1_3:62735045-62735064 Msa0131770:CDS 40.0%
GCAAATTGAACCACAACAAC+CGG + chr1_3:62735100-62735119 None:intergenic 40.0%
! CGGTTTGTTTATATGCAGAG+AGG - chr1_3:62735249-62735268 Msa0131770:intron 40.0%
TTCACAACTTCTTCGAAAGG+AGG + chr1_3:62735320-62735339 None:intergenic 40.0%
TTCTCTCTGTTGTGTGACTT+TGG - chr1_3:62735376-62735395 Msa0131770:intron 40.0%
! CTATGAGTTGAATGCCATTG+TGG - chr1_3:62735565-62735584 Msa0131770:CDS 40.0%
ATAAATCCCATCCTCCACAA+TGG + chr1_3:62735582-62735601 None:intergenic 40.0%
! TTATGTTGTTTGCGCTGTTG+TGG - chr1_3:62735598-62735617 Msa0131770:intron 40.0%
! TGTTGTGGAAGGTTTGGTTA+AGG - chr1_3:62735613-62735632 Msa0131770:intron 40.0%
! GTTGTGGAAGGTTTGGTTAA+GGG - chr1_3:62735614-62735633 Msa0131770:intron 40.0%
! TTGTGGAAGGTTTGGTTAAG+GGG - chr1_3:62735615-62735634 Msa0131770:intron 40.0%
CAGTAATATGCACCAGAATC+AGG + chr1_3:62735686-62735705 None:intergenic 40.0%
TTCTGGTGCATATTACTGCA+AGG - chr1_3:62735688-62735707 Msa0131770:intron 40.0%
TCTGGTGCATATTACTGCAA+GGG - chr1_3:62735689-62735708 Msa0131770:intron 40.0%
TGTGAAGCATGTGTTCCATA+TGG - chr1_3:62735715-62735734 Msa0131770:intron 40.0%
ATGTGTTCCATATGGTTCCA+AGG - chr1_3:62735723-62735742 Msa0131770:CDS 40.0%
GCAGTGTTTGTGATGTTTGA+TGG - chr1_3:62735864-62735883 Msa0131770:CDS 40.0%
GGTGATATGCAAATGTTGCT+TGG - chr1_3:62735885-62735904 Msa0131770:intron 40.0%
TTCAGACTAACAATCTCAGG+AGG + chr1_3:62736067-62736086 None:intergenic 40.0%
! TCCTGAGATTGTTAGTCTGA+AGG - chr1_3:62736066-62736085 Msa0131770:CDS 40.0%
! CCTGAGATTGTTAGTCTGAA+GGG - chr1_3:62736067-62736086 Msa0131770:CDS 40.0%
! AGATTGTTAGTCTGAAGGGA+AGG - chr1_3:62736071-62736090 Msa0131770:CDS 40.0%
! GGGAAGGATGATGTTGTTTA+AGG - chr1_3:62736087-62736106 Msa0131770:CDS 40.0%
!!! ATGGATCTTTTAGGGTGAAG+AGG - chr1_3:62736143-62736162 Msa0131770:intron 40.0%
!!! TGGATCTTTTAGGGTGAAGA+GGG - chr1_3:62736144-62736163 Msa0131770:intron 40.0%
! TTGTTGTTGGGCACTTTAGA+AGG - chr1_3:62736279-62736298 Msa0131770:CDS 40.0%
! TGTTGTTGGGCACTTTAGAA+GGG - chr1_3:62736280-62736299 Msa0131770:CDS 40.0%
TTTGATGTATGGCCTAAGAC+CGG - chr1_3:62736304-62736323 Msa0131770:CDS 40.0%
ACCTACAAATGGAAACCAAC+CGG + chr1_3:62736326-62736345 None:intergenic 40.0%
ATAAGTATACACACCTTGGC+CGG + chr1_3:62736416-62736435 None:intergenic 40.0%
!! TCTTTTGGTTGCAGTAGTGT+AGG - chr1_3:62736494-62736513 Msa0131770:intron 40.0%
ACCCATGAATTGTTTGCAGA+AGG - chr1_3:62736598-62736617 Msa0131770:CDS 40.0%
CCCTTCTGCAAACAATTCAT+GGG + chr1_3:62736602-62736621 None:intergenic 40.0%
CCCATGAATTGTTTGCAGAA+GGG - chr1_3:62736599-62736618 Msa0131770:CDS 40.0%
TCCCTTCTGCAAACAATTCA+TGG + chr1_3:62736603-62736622 None:intergenic 40.0%
TGGTTAGCATACATGTACTC+TGG + chr1_3:62736649-62736668 None:intergenic 40.0%
GCACTTTAATGTGAGTGAGA+TGG - chr1_3:62736796-62736815 Msa0131770:CDS 40.0%
AATGTGCAGTTTGTGTCTGA+TGG - chr1_3:62736825-62736844 Msa0131770:CDS 40.0%
TGTTGAGGAGACACAAATTG+AGG - chr1_3:62736890-62736909 Msa0131770:CDS 40.0%
GACACAAATTGAGGATTTCG+TGG - chr1_3:62736899-62736918 Msa0131770:intron 40.0%
CTTATATTTGCAGCAGAACC+TGG - chr1_3:62737121-62737140 Msa0131770:intron 40.0%
AGCTAAGAGAAATTTGCGCA+AGG - chr1_3:62737253-62737272 Msa0131770:CDS 40.0%
TTTGGTTGCCTTTGCTTTCT+TGG + chr1_3:62737315-62737334 None:intergenic 40.0%
AAAGGCAACCAAACTTGATC+TGG - chr1_3:62737322-62737341 Msa0131770:CDS 40.0%
ATTTCCTAAATGCTCCCTCT+GGG - chr1_3:62737474-62737493 Msa0131770:intron 40.0%
TAAACTCCCATAAACCCAGA+GGG + chr1_3:62737491-62737510 None:intergenic 40.0%
ATAAACTCCCATAAACCCAG+AGG + chr1_3:62737492-62737511 None:intergenic 40.0%
GCACTTGTGTTATGTAGTTG+TGG - chr1_3:62737516-62737535 Msa0131770:intron 40.0%
!! TGCCCCTCAAAATTTTGATG+TGG - chr1_3:62737684-62737703 Msa0131770:CDS 40.0%
TTGTTCCTGGTAGAGAGTCA+TGG - chr1_3:62734233-62734252 Msa0131770:CDS 45.0%
TAGAGAGTCATGGAGGATCA+AGG - chr1_3:62734243-62734262 Msa0131770:CDS 45.0%
CCCTACGAAAGGAAGGAAAA+TGG + chr1_3:62734470-62734489 None:intergenic 45.0%
! TTTTCCTTCCTTTCGTAGGG+TGG - chr1_3:62734470-62734489 Msa0131770:intron 45.0%
TTTCCTTCCTTTCGTAGGGT+GGG - chr1_3:62734471-62734490 Msa0131770:intron 45.0%
!! CAGAAGAAGTTGGTAGAAGG+AGG - chr1_3:62734536-62734555 Msa0131770:intron 45.0%
!! GAAGAAGTTGGTAGAAGGAG+GGG - chr1_3:62734538-62734557 Msa0131770:intron 45.0%
TACGGTATGAACCAACACCA+GGG + chr1_3:62734592-62734611 None:intergenic 45.0%
AGTTCACTTATCCCTGTGCA+TGG - chr1_3:62734671-62734690 Msa0131770:CDS 45.0%
TCAGAGAAAGTCCATGCACA+GGG + chr1_3:62734685-62734704 None:intergenic 45.0%
ATCAGAGAAAGTCCATGCAC+AGG + chr1_3:62734686-62734705 None:intergenic 45.0%
GTCAAGACATTAAACCACGC+TGG + chr1_3:62734765-62734784 None:intergenic 45.0%
! CTGCTGAGAGAGAGTATGTT+AGG - chr1_3:62734863-62734882 Msa0131770:intron 45.0%
! GAGAGAGAGTATGTTAGGGA+TGG - chr1_3:62734868-62734887 Msa0131770:intron 45.0%
AGAGTATGTTAGGGATGGGA+AGG - chr1_3:62734873-62734892 Msa0131770:intron 45.0%
GGATGGGAAGGTTACTAAGA+TGG - chr1_3:62734885-62734904 Msa0131770:intron 45.0%
TGGTGTTTCACTCAGTGGTA+AGG - chr1_3:62735003-62735022 Msa0131770:CDS 45.0%
AAGGTTGAGTGTGCGTTGTT+TGG - chr1_3:62735022-62735041 Msa0131770:CDS 45.0%
TGATTCTCTCCAGGAGATGA+TGG - chr1_3:62735054-62735073 Msa0131770:CDS 45.0%
GATTCTCTCCAGGAGATGAT+GGG - chr1_3:62735055-62735074 Msa0131770:CDS 45.0%
ATTCTCTCCAGGAGATGATG+GGG - chr1_3:62735056-62735075 Msa0131770:CDS 45.0%
! ATGGGTAACGAGGGTTGTTT+TGG - chr1_3:62735188-62735207 Msa0131770:intron 45.0%
! ATCCATGGCATTGAACCTTC+TGG - chr1_3:62735464-62735483 Msa0131770:intron 45.0%
! TGAGTTGAATGCCATTGTGG+AGG - chr1_3:62735568-62735587 Msa0131770:CDS 45.0%
TTGAATGCCATTGTGGAGGA+TGG - chr1_3:62735572-62735591 Msa0131770:intron 45.0%
TGAATGCCATTGTGGAGGAT+GGG - chr1_3:62735573-62735592 Msa0131770:intron 45.0%
! TGTGGAAGGTTTGGTTAAGG+GGG - chr1_3:62735616-62735635 Msa0131770:intron 45.0%
GTTTGGTTAAGGGGGAAGAT+TGG - chr1_3:62735624-62735643 Msa0131770:intron 45.0%
ATCCTGCATGTCGTTGTCAT+AGG - chr1_3:62735651-62735670 Msa0131770:intron 45.0%
!! AGGAGTGTTACTCCTGATTC+TGG - chr1_3:62735671-62735690 Msa0131770:intron 45.0%
CAACTTAGTTTCTGCAGCCA+AGG - chr1_3:62735920-62735939 Msa0131770:intron 45.0%
TCTCTGTCAGGCTGAAAATG+CGG - chr1_3:62736033-62736052 Msa0131770:CDS 45.0%
CCCTTCAGACTAACAATCTC+AGG + chr1_3:62736070-62736089 None:intergenic 45.0%
AGACGACGGTTTACAAACCT+TGG + chr1_3:62736212-62736231 None:intergenic 45.0%
AATGGAAACCAACCGGTCTT+AGG + chr1_3:62736319-62736338 None:intergenic 45.0%
!! ACCGGTTGGTTTCCATTTGT+AGG - chr1_3:62736322-62736341 Msa0131770:CDS 45.0%
!! CTCTGATGTTGTTGGTTCTG+AGG - chr1_3:62736349-62736368 Msa0131770:CDS 45.0%
!! GTTGTTGGTTCTGAGGTTAG+TGG - chr1_3:62736356-62736375 Msa0131770:CDS 45.0%
!! TGGTTCTGAGGTTAGTGGTT+TGG - chr1_3:62736361-62736380 Msa0131770:CDS 45.0%
!! TGAGGTTAGTGGTTTGGTAG+AGG - chr1_3:62736367-62736386 Msa0131770:CDS 45.0%
AGATGTTGCTGAAGAGACAC+CGG - chr1_3:62736394-62736413 Msa0131770:CDS 45.0%
! GGATGCTGAGTTGAGTGAAT+TGG - chr1_3:62736851-62736870 Msa0131770:CDS 45.0%
! TGAGTTGAGTGAATTGGCTG+AGG - chr1_3:62736857-62736876 Msa0131770:CDS 45.0%
ACCATCATCCCCCAAACTTA+CGG + chr1_3:62737168-62737187 None:intergenic 45.0%
TGCTACCACCAAGAAAGCAA+AGG - chr1_3:62737304-62737323 Msa0131770:CDS 45.0%
!! CAGAGGGAGCATTTAGGAAA+TGG + chr1_3:62737475-62737494 None:intergenic 45.0%
CATTTCCTAAATGCTCCCTC+TGG - chr1_3:62737473-62737492 Msa0131770:intron 45.0%
!! TAAACCCAGAGGGAGCATTT+AGG + chr1_3:62737481-62737500 None:intergenic 45.0%
AAATGCTCCCTCTGGGTTTA+TGG - chr1_3:62737481-62737500 Msa0131770:intron 45.0%
AATGCTCCCTCTGGGTTTAT+GGG - chr1_3:62737482-62737501 Msa0131770:intron 45.0%
GCTACTAATTGGCAACTCAG+AGG + chr1_3:62737625-62737644 None:intergenic 45.0%
TTCCTGGTAGAGAGTCATGG+AGG - chr1_3:62734236-62734255 Msa0131770:CDS 50.0%
ATCCTCCATGACTCTCTACC+AGG + chr1_3:62734241-62734260 None:intergenic 50.0%
AGGTGCGTGTGCTTAGAATG+TGG - chr1_3:62734263-62734282 Msa0131770:CDS 50.0%
GGTGCGTGTGCTTAGAATGT+GGG - chr1_3:62734264-62734283 Msa0131770:CDS 50.0%
GAATCTTCCCACCCTACGAA+AGG + chr1_3:62734481-62734500 None:intergenic 50.0%
TCATACTTTGCAGTTGCCCC+TGG - chr1_3:62734572-62734591 Msa0131770:intron 50.0%
ACGGTATGAACCAACACCAG+GGG + chr1_3:62734591-62734610 None:intergenic 50.0%
GTACGGTATGAACCAACACC+AGG + chr1_3:62734593-62734612 None:intergenic 50.0%
CAGTGTGGGCACAAACTTCT+TGG + chr1_3:62734715-62734734 None:intergenic 50.0%
CACCAGAAGGTTCAATGCCA+TGG + chr1_3:62735469-62735488 None:intergenic 50.0%
AGCGAAGGAACAACACCAGA+AGG + chr1_3:62735482-62735501 None:intergenic 50.0%
!! TCTGGTGTTGTTCCTTCGCT+TGG - chr1_3:62735482-62735501 Msa0131770:intron 50.0%
CGTTAGGCCTTCGATTGAAG+AGG - chr1_3:62735511-62735530 Msa0131770:CDS 50.0%
GTTGTTTGCGCTGTTGTGGA+AGG - chr1_3:62735602-62735621 Msa0131770:intron 50.0%
TTGCGCTGTTGTGGAAGGTT+TGG - chr1_3:62735607-62735626 Msa0131770:intron 50.0%
TGGTTAAGGGGGAAGATTGG+TGG - chr1_3:62735627-62735646 Msa0131770:intron 50.0%
CTCCTATGACAACGACATGC+AGG + chr1_3:62735656-62735675 None:intergenic 50.0%
CTCTGTCAGGCTGAAAATGC+GGG - chr1_3:62736034-62736053 Msa0131770:CDS 50.0%
TCGAGAAGACTGCATCTGCA+GGG - chr1_3:62736110-62736129 Msa0131770:intron 50.0%
TCTGCAGGGGTCATGTTTGA+TGG - chr1_3:62736124-62736143 Msa0131770:intron 50.0%
GGAATTCTGCACTTCTGCCA+AGG - chr1_3:62736192-62736211 Msa0131770:CDS 50.0%
ATGTATGGCCTAAGACCGGT+TGG - chr1_3:62736308-62736327 Msa0131770:CDS 50.0%
GGTGTCTCTTCAGCAACATC+TGG + chr1_3:62736395-62736414 None:intergenic 50.0%
! GCAGTTTGTGTCTGATGGTG+TGG - chr1_3:62736830-62736849 Msa0131770:CDS 50.0%
GTGTCTCCTCAACAACCTCA+GGG + chr1_3:62736884-62736903 None:intergenic 50.0%
TGTGTCTCCTCAACAACCTC+AGG + chr1_3:62736885-62736904 None:intergenic 50.0%
GTCTCAGACACATGACCAAC+TGG + chr1_3:62736942-62736961 None:intergenic 50.0%
! GGTCATGTGTCTGAGACATC+TGG - chr1_3:62736945-62736964 Msa0131770:intron 50.0%
TTTGCAGCAGAACCTGGATG+TGG - chr1_3:62737127-62737146 Msa0131770:intron 50.0%
AAACTTACGGCCTCACATCC+AGG + chr1_3:62737155-62737174 None:intergenic 50.0%
TGGATGTGAGGCCGTAAGTT+TGG - chr1_3:62737154-62737173 Msa0131770:intron 50.0%
GGATGTGAGGCCGTAAGTTT+GGG - chr1_3:62737155-62737174 Msa0131770:intron 50.0%
GATGTGAGGCCGTAAGTTTG+GGG - chr1_3:62737156-62737175 Msa0131770:intron 50.0%
ATGTGAGGCCGTAAGTTTGG+GGG - chr1_3:62737157-62737176 Msa0131770:intron 50.0%
GCTGCAGCTGTGGAGAAAAA+TGG - chr1_3:62737218-62737237 Msa0131770:CDS 50.0%
GGTTGCCTTTGCTTTCTTGG+TGG + chr1_3:62737312-62737331 None:intergenic 50.0%
TCTGGATTGAGTTCACCTGC+AGG - chr1_3:62737340-62737359 Msa0131770:CDS 50.0%
CTGGATTGAGTTCACCTGCA+GGG - chr1_3:62737341-62737360 Msa0131770:CDS 50.0%
GCGTGTGCTTAGAATGTGGG+AGG - chr1_3:62734267-62734286 Msa0131770:CDS 55.0%
CTTCCCACCCTACGAAAGGA+AGG + chr1_3:62734477-62734496 None:intergenic 55.0%
TTTGCAGTTGCCCCTGGTGT+TGG - chr1_3:62734578-62734597 Msa0131770:intron 55.0%
!! TTTGGTTGGTGAGTCCAGCG+TGG - chr1_3:62734748-62734767 Msa0131770:CDS 55.0%
!! AGGAGATGATGGGGAGAGCT+GGG - chr1_3:62735065-62735084 Msa0131770:CDS 55.0%
! GGAAGGATTGCCGGTTGTTG+TGG - chr1_3:62735087-62735106 Msa0131770:CDS 55.0%
TCAATCGAAGGCCTAACGCG+AGG + chr1_3:62735509-62735528 None:intergenic 55.0%
GTCGAGAAGACTGCATCTGC+AGG - chr1_3:62736109-62736128 Msa0131770:intron 55.0%
CGAGAAGACTGCATCTGCAG+GGG - chr1_3:62736111-62736130 Msa0131770:intron 55.0%
TGAATTGGCTGAGGACCCTG+AGG - chr1_3:62736866-62736885 Msa0131770:CDS 55.0%
TGAGGACCCTGAGGTTGTTG+AGG - chr1_3:62736875-62736894 Msa0131770:CDS 55.0%
CAGAACCTGGATGTGGATCC+TGG - chr1_3:62737134-62737153 Msa0131770:intron 55.0%
CACATCCAGGATCCACATCC+AGG + chr1_3:62737142-62737161 None:intergenic 55.0%
GGATGTGGATCCTGGATGTG+AGG - chr1_3:62737142-62737161 Msa0131770:intron 55.0%
GCCGTAAGTTTGGGGGATGA+TGG - chr1_3:62737164-62737183 Msa0131770:intron 55.0%
! CGCAAGGCATTTGACGCAGT+TGG - chr1_3:62737269-62737288 Msa0131770:CDS 55.0%
CAGCTCTCCCCATCATCTCC+TGG + chr1_3:62735066-62735085 None:intergenic 60.0%
!! CAGGAGATGATGGGGAGAGC+TGG - chr1_3:62735064-62735083 Msa0131770:CDS 60.0%
!! GGAGATGATGGGGAGAGCTG+GGG - chr1_3:62735066-62735085 Msa0131770:CDS 60.0%
! ATGATGGGGAGAGCTGGGGA+AGG - chr1_3:62735070-62735089 Msa0131770:CDS 60.0%
GAGAGCTGGGGAAGGATTGC+CGG - chr1_3:62735078-62735097 Msa0131770:CDS 60.0%
CTAACGCGAGGACCAAGCGA+AGG + chr1_3:62735497-62735516 None:intergenic 60.0%
CTTCGCTTGGTCCTCGCGTT+AGG - chr1_3:62735495-62735514 Msa0131770:intron 60.0%
TGCTGAAGAGACACCGGCCA+AGG - chr1_3:62736400-62736419 Msa0131770:CDS 60.0%
GCTGCAGCTCCTGACATGTC+TGG + chr1_3:62737206-62737225 None:intergenic 60.0%
CATGTCAGGAGCTGCAGCTG+TGG - chr1_3:62737208-62737227 Msa0131770:CDS 60.0%
CCACACAGTCTCAACCCTGC+AGG + chr1_3:62737358-62737377 None:intergenic 60.0%
CCTGCAGGGTTGAGACTGTG+TGG - chr1_3:62737355-62737374 Msa0131770:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 62734202 62737732 62734202 ID=Msa0131770;Name=Msa0131770
chr1_3 mRNA 62734202 62737732 62734202 ID=Msa0131770-mRNA-1;Parent=Msa0131770;Name=Msa0131770-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|0.83|0.81|0.66|12|0|611
chr1_3 exon 62737583 62737732 62737583 ID=Msa0131770-mRNA-1:exon:21002;Parent=Msa0131770-mRNA-1
chr1_3 exon 62737179 62737446 62737179 ID=Msa0131770-mRNA-1:exon:21001;Parent=Msa0131770-mRNA-1
chr1_3 exon 62737002 62737098 62737002 ID=Msa0131770-mRNA-1:exon:21000;Parent=Msa0131770-mRNA-1
chr1_3 exon 62736795 62736916 62736795 ID=Msa0131770-mRNA-1:exon:20999;Parent=Msa0131770-mRNA-1
chr1_3 exon 62736583 62736667 62736583 ID=Msa0131770-mRNA-1:exon:20998;Parent=Msa0131770-mRNA-1
chr1_3 exon 62736190 62736477 62736190 ID=Msa0131770-mRNA-1:exon:20997;Parent=Msa0131770-mRNA-1
chr1_3 exon 62735993 62736110 62735993 ID=Msa0131770-mRNA-1:exon:20996;Parent=Msa0131770-mRNA-1
chr1_3 exon 62735721 62735891 62735721 ID=Msa0131770-mRNA-1:exon:20995;Parent=Msa0131770-mRNA-1
chr1_3 exon 62735511 62735590 62735511 ID=Msa0131770-mRNA-1:exon:20994;Parent=Msa0131770-mRNA-1
chr1_3 exon 62734939 62735119 62734939 ID=Msa0131770-mRNA-1:exon:20993;Parent=Msa0131770-mRNA-1
chr1_3 exon 62734648 62734800 62734648 ID=Msa0131770-mRNA-1:exon:20992;Parent=Msa0131770-mRNA-1
chr1_3 exon 62734202 62734324 62734202 ID=Msa0131770-mRNA-1:exon:20991;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62737583 62737732 62737583 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62737179 62737446 62737179 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62737002 62737098 62737002 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62736795 62736916 62736795 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62736583 62736667 62736583 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62736190 62736477 62736190 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62735993 62736110 62735993 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62735721 62735891 62735721 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62735511 62735590 62735511 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62734939 62735119 62734939 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62734648 62734800 62734648 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
chr1_3 CDS 62734202 62734324 62734202 ID=Msa0131770-mRNA-1:cds;Parent=Msa0131770-mRNA-1
Gene Sequence

>Msa0131770

ATGGATAAATCCATTGATTGTTTGCATGATATTGTTCCTGGTAGAGAGTCATGGAGGATCAAGGTGCGTGTGCTTAGAATGTGGGAGGTCCCAACCTTTTTGAAACCTGATCAGGCTAATTCTGTTGAGATGGTTTTGATTGATGAGAAGGGTGGGAAGATTCATGCTACCATTAGAAGGCAGTTGTTGTATGTTTTTCAGAAGAAGTTGGTAGAAGGAGGGGTGTACAAGATGTCATACTTTGCAGTTGCCCCTGGTGTTGGTTCATACCGTACTACCATTCATCCATATAAGCTGATATTTCAAATGAAGACAAAGGTGGAGAGGGTTGAGAGTTCACTTATCCCTGTGCATGGACTTTCTCTGATTAAGATCCAAGAAGTTTGTGCCCACACTGCTGATTATGATTATTTGGTTGATGTTGTTGGTTTGATGACGGGGATTTCTGCTGAGAGAGAGTATGTTAGGGATGGGAAGGTTACTAAGATGGTTGTTTTCGAGTTAACTGACGAAAGTGGTAAGGTTGAGTGTGCGTTGTTTGGAAGCTATGTTGATTCTCTCCAGGAGATGATGGGGAGAGCTGGGGAAGGATTGCCGGTTGTTGTGGTTCAATTTGCGAAAATTAAAATATTCCGAGAGAGGGTCTCTATCCAGAATGTTATGAACACAACTAGAATTTGGGTGAATCCTCCTTTCGAAGAAGTTGTGAAATTTAGAGAAGGTGTTGCAATCCATGGCATTGAACCTTCTGGTGTTGTTCCTTCGCTTGGTCCTCGCGTTAGGCCTTCGATTGAAGAGGATTTCTTGCGAAATCATCCCAAGAAAAATATCTATGAGTTGAATGCCATTGTGGAGGATGGGATTTATGTTGTTTGCGCTGTTGTGGAAGGTTTGGTTAAGGGGGAAGATTGGTGGTATCCTGCATGTCGTTGTCATAGGAGTGTTACTCCTGATTCTGGTGCATATTACTGCAAGGGATGTGTGAAGCATGTGTTCCATATGGTTCCAAGGTATAAGGTGAAGCTCAATGCGAGTGATTCTACATCCGATGCAGTGTTTGTGATGTTTGATGGTGATATGCAAATGTTGCTTGGTGAGCAGTGTAGCAACTTAGTTTCTGCAGCCAAGGCTGAAAATGCGGGATTTTATCCTCCTGAGATTGTTAGTCTGAAGGGAAGGATGATGTTGTTTAAGGTCGAGAAGACTGCATCTGCAGGGGTCATGTTTGATGGATCTTTTAGGGTGAAGAGGGTTTGCCTTGATCCATCTATTATTGAGGAATTCTGCACTTCTGCCAAGGTTTTCTCTGATGTTGTTGGTTCTGAGGTTAGTGGTTTGGTAGAGGATCCAGATGTTGCTGAAGAGACACCGGCCAAGGTATGGTATTTTAATGTGCAGTTTGTGTCTGATGGTGTGGATGCTGAGTTGAGTGAATTGGCTGAGGACCCTGAGGTTGTTGAGGAGACACAAATTGAGGATTTCGTGGCTAATGTTGTTGTTACTCCAGTTGGTCATGTGTCTGAGACATCTGGATATGAAAATACTGCTCCATTTCATGAGCAGAACCTGGATGTGGATCCTGGATGTGAGGCCGTAAGTTTGGGGGATGATGGTAGTGTCTTTAAAAGTCCAGACATGTCAGGAGCTGCAGCTGTGGAGAAAAATGGTGCTGTCAACAAAGCTAAGAGAAATTTGCGCAAGGCATTTGACGCATTATGCAGAGCACCTCTGAGTTGCCAATTAGTAGCTAAAGTTGAACTTGATAGAGTTCATTTAATTATTTCTGATGCCCCTCAAAATTTTGATGTGGATGGTTATGGGCAGAAACTAAACTAA

Protein sequence

>Msa0131770

MDKSIDCLHDIVPGRESWRIKVRVLRMWEVPTFLKPDQANSVEMVLIDEKGGKIHATIRRQLLYVFQKKLVEGGVYKMSYFAVAPGVGSYRTTIHPYKLIFQMKTKVERVESSLIPVHGLSLIKIQEVCAHTADYDYLVDVVGLMTGISAEREYVRDGKVTKMVVFELTDESGKVECALFGSYVDSLQEMMGRAGEGLPVVVVQFAKIKIFRERVSIQNVMNTTRIWVNPPFEEVVKFREGVAIHGIEPSGVVPSLGPRVRPSIEEDFLRNHPKKNIYELNAIVEDGIYVVCAVVEGLVKGEDWWYPACRCHRSVTPDSGAYYCKGCVKHVFHMVPRYKVKLNASDSTSDAVFVMFDGDMQMLLGEQCSNLVSAAKAENAGFYPPEIVSLKGRMMLFKVEKTASAGVMFDGSFRVKRVCLDPSIIEEFCTSAKVFSDVVGSEVSGLVEDPDVAEETPAKVWYFNVQFVSDGVDAELSELAEDPEVVEETQIEDFVANVVVTPVGHVSETSGYENTAPFHEQNLDVDPGCEAVSLGDDGSVFKSPDMSGAAAVEKNGAVNKAKRNLRKAFDALCRAPLSCQLVAKVELDRVHLIISDAPQNFDVDGYGQKLN*