AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0890300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0890300 MtrunA17_Chr6g0471251 88.427 769 84 2 1 765 1 768 0.0 1288
Msa0890300 MtrunA17_Chr2g0325661 63.951 896 172 11 2 765 1 877 0.0 981
Msa0890300 MtrunA17_Chr2g0325351 52.426 742 252 10 55 764 16 688 0.0 596
Msa0890300 MtrunA17_Chr2g0325811 45.128 862 341 18 2 763 1 830 0.0 555
Msa0890300 MtrunA17_Chr2g0325621 51.243 724 273 12 51 765 9 661 0.0 544
Msa0890300 MtrunA17_Chr2g0325711 44.780 795 331 11 57 745 26 818 2.37e-180 536
Msa0890300 MtrunA17_Chr2g0325611 56.624 551 188 4 214 764 91 590 8.97e-177 519
Msa0890300 MtrunA17_Chr2g0325761 53.181 613 135 14 2 484 1 591 9.39e-154 464
Msa0890300 MtrunA17_Chr2g0325761 61.616 99 37 1 661 759 591 688 1.49e-27 119
Msa0890300 MtrunA17_Chr2g0325361 50.327 612 243 4 192 764 488 1077 1.13e-153 475
Msa0890300 MtrunA17_Chr2g0325361 37.189 562 206 10 47 474 2 550 4.78e-73 258
Msa0890300 MtrunA17_Chr2g0325321 44.358 771 263 13 48 664 3 761 1.20e-152 463
Msa0890300 MtrunA17_Chr2g0280141 40.241 830 337 17 57 764 25 817 1.32e-149 457
Msa0890300 MtrunA17_Chr2g0325701 43.852 675 271 13 5 661 5 589 1.46e-135 414
Msa0890300 MtrunA17_Chr2g0325231 50.628 478 209 6 200 673 427 881 7.16e-120 382
Msa0890300 MtrunA17_Chr2g0325231 37.236 521 256 12 1 510 1 461 1.69e-54 202
Msa0890300 MtrunA17_Chr5g0434761 69.811 265 80 0 500 764 1 265 2.43e-118 357
Msa0890300 MtrunA17_Chr5g0416271 43.121 596 218 12 74 669 14 488 3.91e-114 354
Msa0890300 MtrunA17_Chr2g0333341 39.435 743 296 17 2 709 1 624 4.81e-111 351
Msa0890300 MtrunA17_Chr2g0325631 69.549 266 81 0 500 765 1 266 5.23e-107 327
Msa0890300 MtrunA17_Chr2g0325861 42.907 571 256 10 158 683 296 841 7.00e-101 330
Msa0890300 MtrunA17_Chr2g0325861 40.262 611 186 13 1 484 1 559 4.44e-90 301
Msa0890300 MtrunA17_Chr2g0325721 42.831 551 189 12 2 476 1 501 1.04e-93 301
Msa0890300 MtrunA17_Chr2g0325221 39.409 609 243 15 2 495 1 598 2.36e-92 303
Msa0890300 MtrunA17_Chr2g0325221 59.804 102 40 1 662 763 599 699 4.67e-27 117
Msa0890300 MtrunA17_Chr2g0325281 43.697 476 207 9 48 474 3 466 1.31e-89 294
Msa0890300 MtrunA17_Chr2g0325281 39.233 339 163 5 158 464 255 582 6.30e-39 153
Msa0890300 MtrunA17_Chr2g0325281 32.653 294 147 6 160 417 313 591 7.28e-15 78.6
Msa0890300 MtrunA17_Chr2g0325651 43.707 437 178 9 1 421 1 385 2.55e-83 270
Msa0890300 MtrunA17_Chr2g0325651 37.879 198 108 4 314 500 194 387 3.05e-14 75.5
Msa0890300 MtrunA17_Chr2g0325651 32.870 216 119 3 301 490 130 345 3.52e-11 65.9
Msa0890300 MtrunA17_Chr5g0434741 46.175 366 126 8 2 358 1 304 3.03e-75 246
Msa0890300 MtrunA17_Chr2g0325261 45.924 368 127 8 1 359 1 305 6.62e-75 245
Msa0890300 MtrunA17_Chr2g0325341 45.924 368 127 8 1 359 1 305 6.62e-75 245
Msa0890300 MtrunA17_Chr2g0325691 39.522 544 253 12 5 504 5 516 1.32e-69 243
Msa0890300 MtrunA17_Chr2g0325691 36.247 389 167 6 162 491 353 719 2.13e-38 152
Msa0890300 MtrunA17_Chr2g0325691 34.555 191 115 1 234 424 542 722 5.11e-14 75.9
Msa0890300 MtrunA17_Chr2g0325291 59.701 201 81 0 519 719 6 206 1.29e-68 225
Msa0890300 MtrunA17_Chr2g0332961 44.411 331 125 7 305 634 81 353 8.38e-59 203
Msa0890300 MtrunA17_Chr2g0332961 35.043 234 134 6 87 312 2 225 2.53e-21 96.3
Msa0890300 MtrunA17_Chr2g0325241 40.823 316 164 3 283 586 120 424 9.85e-53 189
Msa0890300 MtrunA17_Chr2g0332951 46.154 247 88 5 419 661 2 207 1.08e-52 182
Msa0890300 MtrunA17_Chr2g0325331 65.806 155 53 0 500 654 1 155 8.35e-52 178
Msa0890300 MtrunA17_Chr2g0325781 40.171 351 160 11 2 351 1 302 1.67e-50 179
Msa0890300 MtrunA17_Chr2g0325771 64.072 167 50 2 497 661 14 172 2.84e-50 174
Msa0890300 MtrunA17_Chr2g0325741 40.805 348 139 12 1 328 1 301 6.84e-50 177
Msa0890300 MtrunA17_Chr8g0361651 36.634 404 211 7 362 756 32 399 3.92e-45 169
Msa0890300 MtrunA17_Chr7g0235901 40.179 336 173 6 106 440 1 309 5.01e-43 158
Msa0890300 MtrunA17_Chr7g0235901 34.426 244 110 7 278 503 64 275 2.55e-13 71.6
Msa0890300 MtrunA17_Chr3g0140591 53.333 165 76 1 497 661 6 169 5.09e-42 150
Msa0890300 MtrunA17_Chr2g0325311 68.067 119 36 2 648 764 1 119 2.09e-41 147
Msa0890300 MtrunA17_Chr4g0024061 42.063 252 110 4 509 759 432 648 3.07e-39 155
Msa0890300 MtrunA17_Chr2g0325641 38.924 316 126 7 239 494 2 310 1.27e-38 146
Msa0890300 MtrunA17_Chr2g0325641 37.229 231 110 2 276 471 1 231 3.61e-23 101
Msa0890300 MtrunA17_Chr2g0325641 30.798 263 144 5 192 426 53 305 6.19e-14 73.9
Msa0890300 MtrunA17_Chr2g0325641 27.090 299 162 6 119 417 68 310 8.03e-11 64.3
Msa0890300 MtrunA17_Chr2g0325271 64.423 104 37 0 661 764 40 143 1.43e-36 134
Msa0890300 MtrunA17_Chr5g0434751 39.542 306 147 5 196 494 1 275 1.77e-29 119
Msa0890300 MtrunA17_Chr2g0325751 52.985 134 56 1 368 494 1 134 1.54e-27 108
Msa0890300 MtrunA17_Chr2g0325751 35.135 148 86 2 286 433 3 140 2.19e-13 68.6
Msa0890300 MtrunA17_Chr2g0325201 38.710 217 121 4 167 371 11 227 6.90e-27 109
Msa0890300 MtrunA17_Chr7g0235921 72.917 96 25 1 578 673 1 95 9.11e-26 102
Msa0890300 MtrunA17_Chr4g0044221 57.143 98 39 2 501 596 195 291 6.08e-24 103
Msa0890300 MtrunA17_Chr4g0044221 35.000 180 81 3 153 297 12 190 8.05e-14 73.2
Msa0890300 MtrunA17_Chr2g0325801 64.062 64 23 0 127 190 62 125 3.58e-19 84.3
Msa0890300 MtrunA17_Chr4g0053711 27.237 257 160 6 530 763 189 441 2.19e-16 83.2
Msa0890300 MtrunA17_Chr2g0325791 38.667 150 83 2 351 491 41 190 1.58e-14 75.5
Msa0890300 MtrunA17_Chr2g0325791 39.394 132 78 2 233 363 25 155 1.43e-12 69.7
Msa0890300 MtrunA17_Chr2g0325791 35.036 137 79 1 281 417 41 167 5.30e-12 67.8
Msa0890300 MtrunA17_Chr3g0140581 33.987 153 69 3 135 256 4 155 8.39e-13 67.0
Msa0890300 MtrunA17_Chr3g0101121 30.636 173 114 3 588 759 189 356 1.33e-12 70.9
Msa0890300 MtrunA17_Chr5g0445281 25.424 236 154 6 538 763 162 385 7.27e-12 68.9
Msa0890300 MtrunA17_Chr2g0325211 36.813 182 97 3 314 495 3 166 2.68e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0890300 AT5G27220.4 24.291 494 331 9 193 658 322 800 1.95e-14 78.2
Msa0890300 AT5G27220.2 24.291 494 331 9 193 658 322 800 1.95e-14 78.2
Msa0890300 AT5G27220.1 24.291 494 331 9 193 658 322 800 2.57e-14 77.8
Msa0890300 AT5G27220.1 26.606 218 150 5 529 743 861 1071 8.24e-13 72.8
Msa0890300 AT5G27220.3 24.291 494 331 9 193 658 322 800 2.57e-14 77.8
Msa0890300 AT5G27220.3 26.606 218 150 5 529 743 861 1071 8.24e-13 72.8
Msa0890300 AT5G16320.1 25.714 245 175 6 522 764 122 361 3.38e-11 66.6
Msa0890300 AT5G48385.1 25.397 252 169 4 511 743 185 436 5.20e-11 66.6

Find 140 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAATCTGTTTCGCATTC+TGG 0.170781 6_1:-63242712 None:intergenic
GATGGGAACTTAAATGTTAA+AGG 0.230809 6_1:+63238944 Msa0890300:CDS
GCTGAAGAAAGAAGTTAATT+TGG 0.233019 6_1:+63239294 Msa0890300:CDS
AGAATCAAAAGAGGAGAAAT+TGG 0.236431 6_1:+63240023 Msa0890300:CDS
TTGGGGCTATCTGTATTTCT+TGG 0.250533 6_1:+63243045 Msa0890300:three_prime_UTR
AAGCAAGAGAGAGGAATTTA+AGG 0.253598 6_1:+63239534 Msa0890300:CDS
TGCATCAAGCTCTTTCTCTT+TGG 0.259439 6_1:-63239599 None:intergenic
TCATAATATGGTGACATCTT+TGG 0.299892 6_1:-63239217 None:intergenic
GAGTCAAAGCTGAACGAATT+TGG 0.304547 6_1:+63240276 Msa0890300:CDS
AGATCCATCAAGACTTGTTT+TGG 0.316859 6_1:+63240961 Msa0890300:CDS
ATATTCTCCGAGTTCAAGTT+TGG 0.326157 6_1:+63239078 Msa0890300:CDS
AATAGGATGTGGGAGTTAAA+AGG 0.333936 6_1:-63243297 None:intergenic
AGATCACGAAATCGCTAGTC+TGG 0.346396 6_1:+63242889 Msa0890300:CDS
CCGAAGGAGCCTGAGTTAAC+AGG 0.347686 6_1:+63240306 Msa0890300:CDS
ATCAATTAATTGATTCTTGT+CGG 0.348922 6_1:-63242672 None:intergenic
TTATCAAACAACCTCTTAAC+TGG 0.355392 6_1:-63239163 None:intergenic
AAACGAACATAAAGGCAAAT+AGG 0.360837 6_1:+63242997 Msa0890300:CDS
GAAGCAGGTCCTCAGATTCT+AGG 0.366184 6_1:-63242943 None:intergenic
TCTTCGCCGTGATCATAATA+TGG 0.366420 6_1:-63239229 None:intergenic
ATATCCAAAACAAGTCTTGA+TGG 0.375408 6_1:-63240965 None:intergenic
AAAAGTTGCTGAATGTAATC+TGG 0.380835 6_1:+63239567 Msa0890300:CDS
GTACTTAGAAGGACAATTAA+AGG 0.383331 6_1:+63239828 Msa0890300:CDS
TGCAGCTTGATTGCCGGAAA+AGG 0.383405 6_1:+63239995 Msa0890300:CDS
TTGCTATAGTTGATTAATGA+TGG 0.385227 6_1:+63238877 Msa0890300:exon
CCTGTTAACTCAGGCTCCTT+CGG 0.386860 6_1:-63240306 None:intergenic
GCAAGTTGAAGGACGAGAAA+TGG 0.399180 6_1:+63239954 Msa0890300:CDS
AAGAGATGCAGCTTGATTGC+CGG 0.404895 6_1:+63239989 Msa0890300:CDS
CTTTAGTAACTGCTTCCTTT+CGG 0.405060 6_1:-63239662 None:intergenic
TAGCCACATCTATCTGTTAG+AGG 0.409281 6_1:+63241048 Msa0890300:CDS
GTTAGTTACTTTATCAATGC+AGG 0.409309 6_1:+63243130 Msa0890300:three_prime_UTR
GGAACTTGAAAATCATATAA+AGG 0.412247 6_1:+63239912 Msa0890300:CDS
TATGGAGCTGTTTGAGACCC+TGG 0.428104 6_1:+63241285 Msa0890300:CDS
TCACAAATTCATGGATCAAA+GGG 0.428316 6_1:-63243238 None:intergenic
TTCTTACACAGTGGAGTACC+AGG 0.432724 6_1:-63240998 None:intergenic
CATTAATCAACTATAGCAAC+TGG 0.436179 6_1:-63238873 None:intergenic
TCAAAGTCCTCACAAGAAAC+AGG 0.437023 6_1:-63239016 None:intergenic
CTTACACAAGGTCTAATACT+TGG 0.437242 6_1:-63241088 None:intergenic
AATTGGTAGAACAAGTTTGC+GGG 0.439130 6_1:+63240865 Msa0890300:CDS
ATGCAATTGTCACAAATTCA+TGG 0.443477 6_1:-63243247 None:intergenic
AATTATTTACAACAAAATGC+TGG 0.446749 6_1:+63239459 Msa0890300:CDS
TATTCTCCGAGTTCAAGTTT+GGG 0.447098 6_1:+63239079 Msa0890300:CDS
CTTGAACTCGGAGAATATCT+TGG 0.448365 6_1:-63239073 None:intergenic
AACAAACTCAATTGAAATCA+AGG 0.452472 6_1:+63242751 Msa0890300:CDS
ATGGAGCTGTTTGAGACCCT+GGG 0.455267 6_1:+63241286 Msa0890300:CDS
ATGGGAACTTAAATGTTAAA+GGG 0.457071 6_1:+63238945 Msa0890300:CDS
CTCTTCTTAACAGAAACATC+AGG 0.468989 6_1:-63239118 None:intergenic
TCGACGAAGAAGTACTTAGA+AGG 0.469384 6_1:+63239817 Msa0890300:CDS
TCAATTCATGCTCCTTCACT+CGG 0.469446 6_1:-63240050 None:intergenic
CATGAGCTAAACGAACATAA+AGG 0.475448 6_1:+63242989 Msa0890300:CDS
AGAGAATCAGTTCAAAGTAA+AGG 0.475996 6_1:+63240200 Msa0890300:CDS
GCAATGAAAATATTAATTAG+TGG 0.476511 6_1:+63239619 Msa0890300:CDS
TTAAGAATTGCAAAAGGAAG+AGG 0.479453 6_1:+63239329 Msa0890300:CDS
TTTCTTGACAGAAATGTTCA+AGG 0.482922 6_1:-63239194 None:intergenic
GTCACAAATTCATGGATCAA+AGG 0.486905 6_1:-63243239 None:intergenic
ATACTACACTGCCAGTTAAG+AGG 0.487504 6_1:+63239152 Msa0890300:CDS
TTCCCTCAACACATCTGAAT+GGG 0.489378 6_1:-63238993 None:intergenic
GCGACTTGAAGATCATGTTA+AGG 0.491092 6_1:+63239744 Msa0890300:CDS
GATCAATTAAGTCATACAAT+TGG 0.493216 6_1:+63240848 Msa0890300:CDS
TCTGAAGTACACTGGTATAG+TGG 0.493856 6_1:-63243173 None:intergenic
ATTGAATTTCCCCACGAAGC+AGG 0.494840 6_1:-63242958 None:intergenic
GTGTGTTTCCCTGTTAACTC+AGG 0.500333 6_1:-63240315 None:intergenic
TAGACCTTGTGTAAGAGAAA+AGG 0.506206 6_1:+63241096 Msa0890300:CDS
TTCTGTGTTGGTGATGATGA+TGG 0.509317 6_1:+63238926 Msa0890300:CDS
ATTATTTACAACAAAATGCT+GGG 0.509387 6_1:+63239460 Msa0890300:CDS
GCAGCTTGATTGCCGGAAAA+GGG 0.509652 6_1:+63239996 Msa0890300:CDS
AGAATAATCGTGCTCAAATG+AGG 0.509795 6_1:+63239701 Msa0890300:CDS
GTTCCCTCAACACATCTGAA+TGG 0.509947 6_1:-63238994 None:intergenic
TTGCATGTAGGCACAGTTTG+AGG 0.510211 6_1:+63243264 Msa0890300:three_prime_UTR
ATTCAGCAGTGCATATAACT+TGG 0.514087 6_1:+63242649 Msa0890300:CDS
AATCTGAGGACCTGCTTCGT+GGG 0.515903 6_1:+63242948 Msa0890300:CDS
AAGCAAGGAAGAGGAACTTA+AGG 0.518404 6_1:+63239492 Msa0890300:CDS
ATCCCATTCAGATGTGTTGA+GGG 0.518671 6_1:+63238991 Msa0890300:CDS
ATTAACTTCTTTCTTCAGCA+AGG 0.524372 6_1:-63239290 None:intergenic
AAGGGAGTTAGAATCAAAAG+AGG 0.525036 6_1:+63240014 Msa0890300:CDS
AGAACTCGAAGGTCGAGTTA+AGG 0.526141 6_1:+63240080 Msa0890300:CDS
TGGTACTCCACTGTGTAAGA+AGG 0.526175 6_1:+63241000 Msa0890300:CDS
TTGATGTGAAATACTCAACT+TGG 0.530419 6_1:-63240134 None:intergenic
CGAAAGGAAGCAGTTACTAA+AGG 0.530759 6_1:+63239663 Msa0890300:CDS
CAGAAATATTAGAGTCCGAA+AGG 0.531965 6_1:+63239647 Msa0890300:CDS
GAATCTGAGGACCTGCTTCG+TGG 0.537026 6_1:+63242947 Msa0890300:CDS
GAAATTGGAAGGCCGAGTGA+AGG 0.538466 6_1:+63240038 Msa0890300:CDS
GAGGGAACCTGTTTCTTGTG+AGG 0.542255 6_1:+63239009 Msa0890300:CDS
AATTGTTTAAGAATTGCAAA+AGG 0.542780 6_1:+63239323 Msa0890300:CDS
AAACTTTATTTGCAAAACCC+AGG 0.546446 6_1:-63241303 None:intergenic
AACTTTATTTGCAAAACCCA+GGG 0.549647 6_1:-63241302 None:intergenic
CTGATGTTTCTGTTAAGAAG+AGG 0.551021 6_1:+63239119 Msa0890300:CDS
CAATTGGTAGAACAAGTTTG+CGG 0.560973 6_1:+63240864 Msa0890300:CDS
GCAGATTGAAGTACAAGTCA+AGG 0.561383 6_1:+63240248 Msa0890300:CDS
GAAGGAGCTCAAGTTGAAAG+AGG 0.561445 6_1:+63240224 Msa0890300:CDS
TGATGTTTCTGTTAAGAAGA+GGG 0.562050 6_1:+63239120 Msa0890300:CDS
AGAGAATAAGTGCAAAGGAC+GGG 0.562693 6_1:+63239780 Msa0890300:CDS
TCAGTTCAAAGTAAAGGAGA+AGG 0.569881 6_1:+63240206 Msa0890300:CDS
CATCCCATTCAGATGTGTTG+AGG 0.570187 6_1:+63238990 Msa0890300:CDS
TGCTCAGCACAAGACAGCTA+TGG 0.572742 6_1:+63241267 Msa0890300:CDS
AAAAGTTGAAAGCAAGGAAG+AGG 0.574724 6_1:+63239483 Msa0890300:CDS
CGAAGGAGCCTGAGTTAACA+GGG 0.575767 6_1:+63240307 Msa0890300:CDS
TCACGAGCGAAGCAGATGAA+AGG 0.576879 6_1:+63239859 Msa0890300:CDS
AGCTGTCTTGTGCTGAGCAA+CGG 0.577834 6_1:-63241263 None:intergenic
TGCAAGACAAGGAAAGTACA+TGG 0.578367 6_1:-63243074 None:intergenic
GATAAGCGAAACTTCTGTGT+TGG 0.587037 6_1:+63238914 Msa0890300:CDS
AGACAAGGAAAGTACATGGA+TGG 0.590027 6_1:-63243070 None:intergenic
GGTACTCCACTGTGTAAGAA+GGG 0.590457 6_1:+63241001 Msa0890300:CDS
ATATGCAGTTGCATCTCACA+TGG 0.591770 6_1:+63240823 Msa0890300:intron
TAAGTGCAAAGGACGGGTGG+AGG 0.593225 6_1:+63239786 Msa0890300:CDS
CATGTTCCCAAACTTGAACT+CGG 0.594075 6_1:-63239085 None:intergenic
GCTGGGAAAAGTTGAAAGCA+AGG 0.594654 6_1:+63239477 Msa0890300:CDS
AAGAGAATAAGTGCAAAGGA+CGG 0.595971 6_1:+63239779 Msa0890300:CDS
AAAAGTTGAAAGCAAGAGAG+AGG 0.600380 6_1:+63239525 Msa0890300:CDS
GAATAATCGTGCTCAAATGA+GGG 0.601937 6_1:+63239702 Msa0890300:CDS
TCAAAGCTGAACGAATTTGG+TGG 0.606081 6_1:+63240279 Msa0890300:CDS
ATTCATGGATCAAAGGGGAA+AGG 0.606671 6_1:-63243232 None:intergenic
GATCACGAAATCGCTAGTCT+GGG 0.607346 6_1:+63242890 Msa0890300:CDS
AATTTGTGACAATTGCATGT+AGG 0.609210 6_1:+63243252 Msa0890300:three_prime_UTR
ATGTCACCATATTATGATCA+CGG 0.609362 6_1:+63239223 Msa0890300:CDS
ACAGTTTAAGTCAACGAAGA+GGG 0.610799 6_1:+63239891 Msa0890300:CDS
TCAAAAGAGAATAAGTGCAA+AGG 0.611853 6_1:+63239775 Msa0890300:CDS
TCAAAAGAGGAGAAATTGGA+AGG 0.614791 6_1:+63240027 Msa0890300:CDS
CGAATTTGGTGGACAACCGA+AGG 0.618341 6_1:+63240290 Msa0890300:CDS
ACGATAAGCAATTTGAAGAA+CGG 0.619335 6_1:+63240157 Msa0890300:CDS
TGGTAGAACAAGTTTGCGGG+TGG 0.621034 6_1:+63240868 Msa0890300:CDS
GGAGAATATCTTGGTGACAC+AGG 0.622505 6_1:-63239064 None:intergenic
AAAGGGCTCAATTCATGTGA+GGG 0.623050 6_1:+63238962 Msa0890300:CDS
ATCTGAGGACCTGCTTCGTG+GGG 0.627236 6_1:+63242949 Msa0890300:CDS
AGACAACAGCCTAGAATCTG+AGG 0.629433 6_1:+63242934 Msa0890300:CDS
GAATAAGTGCAAAGGACGGG+TGG 0.629481 6_1:+63239783 Msa0890300:CDS
TTGTTAAATATCTCATCAGG+AGG 0.629954 6_1:+63242603 Msa0890300:CDS
AATCAACTATAGCAACTGGA+AGG 0.630773 6_1:-63238869 None:intergenic
ACTAAAACTCTGAAGTACAC+TGG 0.631757 6_1:-63243181 None:intergenic
TCTGTGTTGGTGATGATGAT+GGG 0.640405 6_1:+63238927 Msa0890300:CDS
TAAAGGGCTCAATTCATGTG+AGG 0.641920 6_1:+63238961 Msa0890300:CDS
ATAAGCAATTTGAAGAACGG+TGG 0.646820 6_1:+63240160 Msa0890300:CDS
AACAGTTTAAGTCAACGAAG+AGG 0.648243 6_1:+63239890 Msa0890300:CDS
TCTATCTAAATTGCAAGACA+AGG 0.659337 6_1:-63243085 None:intergenic
GTTCCTCTAACAGATAGATG+TGG 0.661932 6_1:-63241051 None:intergenic
ACTTGAAAATCATATAAAGG+AGG 0.666678 6_1:+63239915 Msa0890300:CDS
CACAAATTCATGGATCAAAG+GGG 0.674220 6_1:-63243237 None:intergenic
TCTTACACAGTGGAGTACCA+GGG 0.675321 6_1:-63240997 None:intergenic
TTGGATATAATACAGAACCC+TGG 0.676216 6_1:+63240980 Msa0890300:CDS
TTGAAAGCAGAAGAACTCGA+AGG 0.687468 6_1:+63240069 Msa0890300:CDS
ATTAAATAAACATATTGACG+AGG 0.707144 6_1:+63240344 Msa0890300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCAATATCAGATTTTATA+AGG - chr6_1:63238376-63238395 None:intergenic 15.0%
!! AATTCAATTGAAAAATTCAT+AGG - chr6_1:63238418-63238437 None:intergenic 15.0%
!! TCTTCAATTGTAAAATTTAT+AGG - chr6_1:63238793-63238812 None:intergenic 15.0%
!!! TTTACTCATTTTATCATTTT+TGG + chr6_1:63241445-63241464 Msa0890300:intron 15.0%
!!! TATTTTCTTATTTACATCAA+AGG + chr6_1:63241657-63241676 Msa0890300:intron 15.0%
!! ATCAAACATAAATGATAAAC+AGG - chr6_1:63238593-63238612 None:intergenic 20.0%
!! TTATCATTTATGTTTGATTC+TGG + chr6_1:63238595-63238614 Msa0890300:intron 20.0%
!! AATTGTTTAAGAATTGCAAA+AGG + chr6_1:63239323-63239342 Msa0890300:CDS 20.0%
!! AATTATTTACAACAAAATGC+TGG + chr6_1:63239459-63239478 Msa0890300:CDS 20.0%
!! ATTATTTACAACAAAATGCT+GGG + chr6_1:63239460-63239479 Msa0890300:CDS 20.0%
!! GCAATGAAAATATTAATTAG+TGG + chr6_1:63239619-63239638 Msa0890300:CDS 20.0%
!! ATTAAATAAACATATTGACG+AGG + chr6_1:63240344-63240363 Msa0890300:CDS 20.0%
!! GAAATTCATAAAATGTTCAA+GGG - chr6_1:63240505-63240524 None:intergenic 20.0%
!! AGAAATTCATAAAATGTTCA+AGG - chr6_1:63240506-63240525 None:intergenic 20.0%
!!! TTATTTTTAAACCATAGACA+TGG - chr6_1:63240557-63240576 None:intergenic 20.0%
!! AGAGAATACTAAAAATTCTT+CGG + chr6_1:63241156-63241175 Msa0890300:CDS 20.0%
!! AAATCATAAAGATAAAAGGA+GGG - chr6_1:63241347-63241366 None:intergenic 20.0%
!! TACCAAATCATAAAGATAAA+AGG - chr6_1:63241351-63241370 None:intergenic 20.0%
!! TTATAAAATGTGCAGATTAT+TGG + chr6_1:63241391-63241410 Msa0890300:intron 20.0%
!! TGTAAATAATAAGATACTAC+TGG + chr6_1:63241521-63241540 Msa0890300:intron 20.0%
!! ATAAAACCACATTAATTAGT+TGG + chr6_1:63241617-63241636 Msa0890300:intron 20.0%
!!! TTAATTAGTTGGATACATTT+TGG + chr6_1:63241628-63241647 Msa0890300:intron 20.0%
!!! TGATTTTCTCAAATAATTTG+CGG - chr6_1:63241734-63241753 None:intergenic 20.0%
!!! GATTTTTTTTGGGTTATATT+TGG - chr6_1:63241980-63241999 None:intergenic 20.0%
!!! TCATTTCAGAGATTTTTTTT+GGG - chr6_1:63241990-63242009 None:intergenic 20.0%
!!! TTCATTTCAGAGATTTTTTT+TGG - chr6_1:63241991-63242010 None:intergenic 20.0%
!! GAAGCAGTATAAAAAAAAAA+AGG + chr6_1:63242238-63242257 Msa0890300:intron 20.0%
!! ATTAATCCTTTCAAGAAAAT+AGG + chr6_1:63242274-63242293 Msa0890300:intron 20.0%
!!! ACTTTAAAATTGTTTGACTT+TGG - chr6_1:63242320-63242339 None:intergenic 20.0%
!!! ATTTTGTTAAATATCTCATC+AGG + chr6_1:63242600-63242619 Msa0890300:CDS 20.0%
!!! ATCAATTAATTGATTCTTGT+CGG - chr6_1:63242675-63242694 None:intergenic 20.0%
!! TAAGTTATGACTATCATTTA+GGG - chr6_1:63242836-63242855 None:intergenic 20.0%
!! TTAAGTTATGACTATCATTT+AGG - chr6_1:63242837-63242856 None:intergenic 20.0%
!! TCAAAACTTTTAACATTGCA+TGG - chr6_1:63238546-63238565 None:intergenic 25.0%
! ATGATAAACAGGAAGAAAAA+TGG - chr6_1:63238582-63238601 None:intergenic 25.0%
! CTGTACTTCATAATAGATTA+CGG - chr6_1:63238623-63238642 None:intergenic 25.0%
! TTGCTATAGTTGATTAATGA+TGG + chr6_1:63238877-63238896 Msa0890300:exon 25.0%
!!! TTGATTAATGATGGATTTTG+AGG + chr6_1:63238886-63238905 Msa0890300:exon 25.0%
! ATGGGAACTTAAATGTTAAA+GGG + chr6_1:63238945-63238964 Msa0890300:CDS 25.0%
!! ATTACATTCAGCAACTTTTT+GGG - chr6_1:63239566-63239585 None:intergenic 25.0%
! GGAACTTGAAAATCATATAA+AGG + chr6_1:63239912-63239931 Msa0890300:CDS 25.0%
! ACTTGAAAATCATATAAAGG+AGG + chr6_1:63239915-63239934 Msa0890300:CDS 25.0%
!! TCAAAAAATAAGCAAGTTGA+AGG + chr6_1:63239943-63239962 Msa0890300:CDS 25.0%
! CGAATCAAAAAATAAGCATT+TGG + chr6_1:63240107-63240126 Msa0890300:CDS 25.0%
! TTTCACTATTTGCATTTACT+TGG - chr6_1:63240635-63240654 None:intergenic 25.0%
! CAAAACTAAATAAATGGAGA+CGG - chr6_1:63240699-63240718 None:intergenic 25.0%
! AGTTACAATCAATGTCAATA+TGG - chr6_1:63240725-63240744 None:intergenic 25.0%
! GATCAATTAAGTCATACAAT+TGG + chr6_1:63240848-63240867 Msa0890300:CDS 25.0%
! CAAATCATAAAGATAAAAGG+AGG - chr6_1:63241348-63241367 None:intergenic 25.0%
!! CTCCTTTTATCTTTATGATT+TGG + chr6_1:63241346-63241365 Msa0890300:intron 25.0%
!!! TTTATCATTTTTGGTAGATG+TGG + chr6_1:63241454-63241473 Msa0890300:intron 25.0%
!!! TTATCATTTTTGGTAGATGT+GGG + chr6_1:63241455-63241474 Msa0890300:intron 25.0%
! ATGTATCCAACTAATTAATG+TGG - chr6_1:63241626-63241645 None:intergenic 25.0%
! AAAAAAAAGGAATCAGTTCA+AGG + chr6_1:63242251-63242270 Msa0890300:intron 25.0%
! AAGATTAAGATTGTAGTTGT+TGG + chr6_1:63242377-63242396 Msa0890300:intron 25.0%
! GATATTTAACAAAATCTGCA+AGG - chr6_1:63242595-63242614 None:intergenic 25.0%
! AACAAACTCAATTGAAATCA+AGG + chr6_1:63242751-63242770 Msa0890300:CDS 25.0%
! AAGTTATGACTATCATTTAG+GGG - chr6_1:63242835-63242854 None:intergenic 25.0%
!!! GTACATAAACTACTTTTGTT+GGG + chr6_1:63243027-63243046 Msa0890300:three_prime_UTR 25.0%
!!! TACATAAACTACTTTTGTTG+GGG + chr6_1:63243028-63243047 Msa0890300:three_prime_UTR 25.0%
! TGATTTTCTCAAACTATCTG+CGG + chr6_1:63238723-63238742 Msa0890300:intron 30.0%
CATTAATCAACTATAGCAAC+TGG - chr6_1:63238876-63238895 None:intergenic 30.0%
GATGGGAACTTAAATGTTAA+AGG + chr6_1:63238944-63238963 Msa0890300:CDS 30.0%
! TGATGTTTCTGTTAAGAAGA+GGG + chr6_1:63239120-63239139 Msa0890300:CDS 30.0%
TTATCAAACAACCTCTTAAC+TGG - chr6_1:63239166-63239185 None:intergenic 30.0%
TTTCTTGACAGAAATGTTCA+AGG - chr6_1:63239197-63239216 None:intergenic 30.0%
TCATAATATGGTGACATCTT+TGG - chr6_1:63239220-63239239 None:intergenic 30.0%
ATGTCACCATATTATGATCA+CGG + chr6_1:63239223-63239242 Msa0890300:CDS 30.0%
ATTAACTTCTTTCTTCAGCA+AGG - chr6_1:63239293-63239312 None:intergenic 30.0%
GCTGAAGAAAGAAGTTAATT+TGG + chr6_1:63239294-63239313 Msa0890300:CDS 30.0%
TTAAGAATTGCAAAAGGAAG+AGG + chr6_1:63239329-63239348 Msa0890300:CDS 30.0%
! TCTCTTGCTTTCAACTTTTT+GGG - chr6_1:63239524-63239543 None:intergenic 30.0%
! GATTACATTCAGCAACTTTT+TGG - chr6_1:63239567-63239586 None:intergenic 30.0%
AAAAGTTGCTGAATGTAATC+TGG + chr6_1:63239567-63239586 Msa0890300:CDS 30.0%
TCAAAAGAGAATAAGTGCAA+AGG + chr6_1:63239775-63239794 Msa0890300:CDS 30.0%
GTACTTAGAAGGACAATTAA+AGG + chr6_1:63239828-63239847 Msa0890300:CDS 30.0%
AGAATCAAAAGAGGAGAAAT+TGG + chr6_1:63240023-63240042 Msa0890300:CDS 30.0%
TTGATGTGAAATACTCAACT+TGG - chr6_1:63240137-63240156 None:intergenic 30.0%
ACGATAAGCAATTTGAAGAA+CGG + chr6_1:63240157-63240176 Msa0890300:CDS 30.0%
AGAGAATCAGTTCAAAGTAA+AGG + chr6_1:63240200-63240219 Msa0890300:CDS 30.0%
TATTGACGAGGAAAAAGAAT+TGG + chr6_1:63240356-63240375 Msa0890300:CDS 30.0%
ATTGACGAGGAAAAAGAATT+GGG + chr6_1:63240357-63240376 Msa0890300:CDS 30.0%
!! CGTCTCCATTTATTTAGTTT+TGG + chr6_1:63240697-63240716 Msa0890300:intron 30.0%
TGGCACCAAAACTAAATAAA+TGG - chr6_1:63240705-63240724 None:intergenic 30.0%
ATATCCAAAACAAGTCTTGA+TGG - chr6_1:63240968-63240987 None:intergenic 30.0%
! TTTTGATGAATGCGAAGTTT+TGG + chr6_1:63241228-63241247 Msa0890300:CDS 30.0%
! AACTTTATTTGCAAAACCCA+GGG - chr6_1:63241305-63241324 None:intergenic 30.0%
! AAACTTTATTTGCAAAACCC+AGG - chr6_1:63241306-63241325 None:intergenic 30.0%
! GGTTTTGCAAATAAAGTTTC+TGG + chr6_1:63241307-63241326 Msa0890300:CDS 30.0%
ACAACTAAAAGAATGACAGT+TGG + chr6_1:63241584-63241603 Msa0890300:intron 30.0%
! AGTTGTCCTATTTTCTTGAA+AGG - chr6_1:63242283-63242302 None:intergenic 30.0%
TAACAAAAAACTGAGCAGAT+TGG - chr6_1:63242509-63242528 None:intergenic 30.0%
TCACTTCATCAAAACTTATC+AGG - chr6_1:63242561-63242580 None:intergenic 30.0%
TTGTTAAATATCTCATCAGG+AGG + chr6_1:63242603-63242622 Msa0890300:CDS 30.0%
!! TTGAGTTTGTTTTCTCACAA+TGG - chr6_1:63242742-63242761 None:intergenic 30.0%
ATTACTATGAACTTGAACTC+AGG + chr6_1:63242856-63242875 Msa0890300:intron 30.0%
AAACGAACATAAAGGCAAAT+AGG + chr6_1:63242997-63243016 Msa0890300:CDS 30.0%
! ATAAAGGCAAATAGGTTTTG+TGG + chr6_1:63243005-63243024 Msa0890300:exon 30.0%
!! GGTACATAAACTACTTTTGT+TGG + chr6_1:63243026-63243045 Msa0890300:three_prime_UTR 30.0%
TCTATCTAAATTGCAAGACA+AGG - chr6_1:63243088-63243107 None:intergenic 30.0%
! GTTAGTTACTTTATCAATGC+AGG + chr6_1:63243130-63243149 Msa0890300:three_prime_UTR 30.0%
TCACAAATTCATGGATCAAA+GGG - chr6_1:63243241-63243260 None:intergenic 30.0%
ATGCAATTGTCACAAATTCA+TGG - chr6_1:63243250-63243269 None:intergenic 30.0%
AATTTGTGACAATTGCATGT+AGG + chr6_1:63243252-63243271 Msa0890300:three_prime_UTR 30.0%
CAACTGGAAGGAAAAATCTT+GGG - chr6_1:63238860-63238879 None:intergenic 35.0%
AATCAACTATAGCAACTGGA+AGG - chr6_1:63238872-63238891 None:intergenic 35.0%
! ATATTCTCCGAGTTCAAGTT+TGG + chr6_1:63239078-63239097 Msa0890300:CDS 35.0%
! TATTCTCCGAGTTCAAGTTT+GGG + chr6_1:63239079-63239098 Msa0890300:CDS 35.0%
CTCTTCTTAACAGAAACATC+AGG - chr6_1:63239121-63239140 None:intergenic 35.0%
! CTGATGTTTCTGTTAAGAAG+AGG + chr6_1:63239119-63239138 Msa0890300:CDS 35.0%
AAAAGTTGAAAGCAAGGAAG+AGG + chr6_1:63239483-63239502 Msa0890300:CDS 35.0%
!!! GCTTTCAACTTTTTGGGTAA+GGG - chr6_1:63239518-63239537 None:intergenic 35.0%
!!! TGCTTTCAACTTTTTGGGTA+AGG - chr6_1:63239519-63239538 None:intergenic 35.0%
! CTCTCTTGCTTTCAACTTTT+TGG - chr6_1:63239525-63239544 None:intergenic 35.0%
AAAAGTTGAAAGCAAGAGAG+AGG + chr6_1:63239525-63239544 Msa0890300:CDS 35.0%
AAGCAAGAGAGAGGAATTTA+AGG + chr6_1:63239534-63239553 Msa0890300:CDS 35.0%
CAGAAATATTAGAGTCCGAA+AGG + chr6_1:63239647-63239666 Msa0890300:CDS 35.0%
CTTTAGTAACTGCTTCCTTT+CGG - chr6_1:63239665-63239684 None:intergenic 35.0%
AGAATAATCGTGCTCAAATG+AGG + chr6_1:63239701-63239720 Msa0890300:CDS 35.0%
GAATAATCGTGCTCAAATGA+GGG + chr6_1:63239702-63239721 Msa0890300:CDS 35.0%
AAGAGAATAAGTGCAAAGGA+CGG + chr6_1:63239779-63239798 Msa0890300:CDS 35.0%
AACAGTTTAAGTCAACGAAG+AGG + chr6_1:63239890-63239909 Msa0890300:CDS 35.0%
ACAGTTTAAGTCAACGAAGA+GGG + chr6_1:63239891-63239910 Msa0890300:CDS 35.0%
! TTGATTCTAACTCCCTTTTC+CGG - chr6_1:63240011-63240030 None:intergenic 35.0%
AAGGGAGTTAGAATCAAAAG+AGG + chr6_1:63240014-63240033 Msa0890300:CDS 35.0%
TCAAAAGAGGAGAAATTGGA+AGG + chr6_1:63240027-63240046 Msa0890300:CDS 35.0%
ATAAGCAATTTGAAGAACGG+TGG + chr6_1:63240160-63240179 Msa0890300:CDS 35.0%
TCAGTTCAAAGTAAAGGAGA+AGG + chr6_1:63240206-63240225 Msa0890300:CDS 35.0%
!! TATGAGGGTGCTAAAATATC+TGG + chr6_1:63240787-63240806 Msa0890300:intron 35.0%
CAATTGGTAGAACAAGTTTG+CGG + chr6_1:63240864-63240883 Msa0890300:CDS 35.0%
AATTGGTAGAACAAGTTTGC+GGG + chr6_1:63240865-63240884 Msa0890300:CDS 35.0%
!! AGATCCATCAAGACTTGTTT+TGG + chr6_1:63240961-63240980 Msa0890300:CDS 35.0%
TTGGATATAATACAGAACCC+TGG + chr6_1:63240980-63240999 Msa0890300:CDS 35.0%
CTTACACAAGGTCTAATACT+TGG - chr6_1:63241091-63241110 None:intergenic 35.0%
TAGACCTTGTGTAAGAGAAA+AGG + chr6_1:63241096-63241115 Msa0890300:CDS 35.0%
! AATGCCTTTTCTCTTACACA+AGG - chr6_1:63241103-63241122 None:intergenic 35.0%
AAAGATAAAAGGAGGGATAC+TGG - chr6_1:63241340-63241359 None:intergenic 35.0%
! TCTCAAATAATTTGCGGTGT+TGG - chr6_1:63241728-63241747 None:intergenic 35.0%
AATGTGATTCAGATATGCTC+TGG - chr6_1:63241901-63241920 None:intergenic 35.0%
AAAACACATGCAAGAACTGT+TGG - chr6_1:63242444-63242463 None:intergenic 35.0%
GACATCTTAGTGTTAATGCT+TGG + chr6_1:63242473-63242492 Msa0890300:intron 35.0%
ATTCAGCAGTGCATATAACT+TGG + chr6_1:63242649-63242668 Msa0890300:CDS 35.0%
TACAAATCTGTTTCGCATTC+TGG - chr6_1:63242715-63242734 None:intergenic 35.0%
! TTAGGGGTATATGTCTGAAA+TGG - chr6_1:63242819-63242838 None:intergenic 35.0%
ATGAACTTGAACTCAGGATA+AGG + chr6_1:63242862-63242881 Msa0890300:intron 35.0%
CATGAGCTAAACGAACATAA+AGG + chr6_1:63242989-63243008 Msa0890300:CDS 35.0%
!! ACTAAAACTCTGAAGTACAC+TGG - chr6_1:63243184-63243203 None:intergenic 35.0%
CACAAATTCATGGATCAAAG+GGG - chr6_1:63243240-63243259 None:intergenic 35.0%
GTCACAAATTCATGGATCAA+AGG - chr6_1:63243242-63243261 None:intergenic 35.0%
TATGAAGTACAGACACTCCA+CGG + chr6_1:63238631-63238650 Msa0890300:intron 40.0%
TTTATAGGCCCTATGAAGCA+CGG - chr6_1:63238778-63238797 None:intergenic 40.0%
GCAACTGGAAGGAAAAATCT+TGG - chr6_1:63238861-63238880 None:intergenic 40.0%
GATAAGCGAAACTTCTGTGT+TGG + chr6_1:63238914-63238933 Msa0890300:CDS 40.0%
!! TTCTGTGTTGGTGATGATGA+TGG + chr6_1:63238926-63238945 Msa0890300:CDS 40.0%
!! TCTGTGTTGGTGATGATGAT+GGG + chr6_1:63238927-63238946 Msa0890300:CDS 40.0%
TAAAGGGCTCAATTCATGTG+AGG + chr6_1:63238961-63238980 Msa0890300:CDS 40.0%
AAAGGGCTCAATTCATGTGA+GGG + chr6_1:63238962-63238981 Msa0890300:CDS 40.0%
ATCCCATTCAGATGTGTTGA+GGG + chr6_1:63238991-63239010 Msa0890300:CDS 40.0%
TTCCCTCAACACATCTGAAT+GGG - chr6_1:63238996-63239015 None:intergenic 40.0%
TCAAAGTCCTCACAAGAAAC+AGG - chr6_1:63239019-63239038 None:intergenic 40.0%
CTTGAACTCGGAGAATATCT+TGG - chr6_1:63239076-63239095 None:intergenic 40.0%
CATGTTCCCAAACTTGAACT+CGG - chr6_1:63239088-63239107 None:intergenic 40.0%
ATACTACACTGCCAGTTAAG+AGG + chr6_1:63239152-63239171 Msa0890300:CDS 40.0%
TCTTCGCCGTGATCATAATA+TGG - chr6_1:63239232-63239251 None:intergenic 40.0%
AAGCAAGGAAGAGGAACTTA+AGG + chr6_1:63239492-63239511 Msa0890300:CDS 40.0%
TGCATCAAGCTCTTTCTCTT+TGG - chr6_1:63239602-63239621 None:intergenic 40.0%
CGAAAGGAAGCAGTTACTAA+AGG + chr6_1:63239663-63239682 Msa0890300:CDS 40.0%
GCGACTTGAAGATCATGTTA+AGG + chr6_1:63239744-63239763 Msa0890300:CDS 40.0%
AGAGAATAAGTGCAAAGGAC+GGG + chr6_1:63239780-63239799 Msa0890300:CDS 40.0%
!! TCGACGAAGAAGTACTTAGA+AGG + chr6_1:63239817-63239836 Msa0890300:CDS 40.0%
TCAATTCATGCTCCTTCACT+CGG - chr6_1:63240053-63240072 None:intergenic 40.0%
TTGAAAGCAGAAGAACTCGA+AGG + chr6_1:63240069-63240088 Msa0890300:CDS 40.0%
GCAGATTGAAGTACAAGTCA+AGG + chr6_1:63240248-63240267 Msa0890300:CDS 40.0%
GAGTCAAAGCTGAACGAATT+TGG + chr6_1:63240276-63240295 Msa0890300:CDS 40.0%
TCAAAGCTGAACGAATTTGG+TGG + chr6_1:63240279-63240298 Msa0890300:CDS 40.0%
! TGTGCTTTTGTCCATGTCTA+TGG + chr6_1:63240543-63240562 Msa0890300:intron 40.0%
ACGACGCTTCTATCAATATG+AGG + chr6_1:63240771-63240790 Msa0890300:intron 40.0%
CGACGCTTCTATCAATATGA+GGG + chr6_1:63240772-63240791 Msa0890300:intron 40.0%
ATATGCAGTTGCATCTCACA+TGG + chr6_1:63240823-63240842 Msa0890300:intron 40.0%
! TTTTCTCCCTTCTTACACAG+TGG - chr6_1:63241010-63241029 None:intergenic 40.0%
TAGCCACATCTATCTGTTAG+AGG + chr6_1:63241048-63241067 Msa0890300:CDS 40.0%
GTTCCTCTAACAGATAGATG+TGG - chr6_1:63241054-63241073 None:intergenic 40.0%
!!! CTGCTGCTTTTGTCAGTTTA+TGG + chr6_1:63241193-63241212 Msa0890300:CDS 40.0%
!! CATTAGCCCACTCTAAGATA+GGG + chr6_1:63241414-63241433 Msa0890300:intron 40.0%
TTGACACCCTATCTTAGAGT+GGG - chr6_1:63241423-63241442 None:intergenic 40.0%
ATTGACACCCTATCTTAGAG+TGG - chr6_1:63241424-63241443 None:intergenic 40.0%
TGCTTCATAGTTCCTGTCTA+GGG - chr6_1:63241685-63241704 None:intergenic 40.0%
ATGCTTCATAGTTCCTGTCT+AGG - chr6_1:63241686-63241705 None:intergenic 40.0%
TAGACAGGAACTATGAAGCA+TGG + chr6_1:63241685-63241704 Msa0890300:intron 40.0%
ATGAAGCATGGATACGAACA+CGG + chr6_1:63241697-63241716 Msa0890300:intron 40.0%
GCACCACAAGTTTCTTACAT+CGG + chr6_1:63241796-63241815 Msa0890300:intron 40.0%
CACCACAAGTTTCTTACATC+GGG + chr6_1:63241797-63241816 Msa0890300:intron 40.0%
TATGAAGCACAGACAATCCT+CGG - chr6_1:63241834-63241853 None:intergenic 40.0%
TTAAGAAGTCGCAGACTCTT+TGG - chr6_1:63242066-63242085 None:intergenic 40.0%
CTCATTATGCCTTCATCACT+TGG - chr6_1:63242108-63242127 None:intergenic 40.0%
TTGGGGCTATCTGTATTTCT+TGG + chr6_1:63243045-63243064 Msa0890300:three_prime_UTR 40.0%
! AGACAAGGAAAGTACATGGA+TGG - chr6_1:63243073-63243092 None:intergenic 40.0%
! TGCAAGACAAGGAAAGTACA+TGG - chr6_1:63243077-63243096 None:intergenic 40.0%
! TCTGAAGTACACTGGTATAG+TGG - chr6_1:63243176-63243195 None:intergenic 40.0%
ATTCATGGATCAAAGGGGAA+AGG - chr6_1:63243235-63243254 None:intergenic 40.0%
! TCGTATCGGTATTGGACACA+TGG - chr6_1:63238668-63238687 None:intergenic 45.0%
CATCCCATTCAGATGTGTTG+AGG + chr6_1:63238990-63239009 Msa0890300:CDS 45.0%
GTTCCCTCAACACATCTGAA+TGG - chr6_1:63238997-63239016 None:intergenic 45.0%
! GGAGAATATCTTGGTGACAC+AGG - chr6_1:63239067-63239086 None:intergenic 45.0%
GCTGGGAAAAGTTGAAAGCA+AGG + chr6_1:63239477-63239496 Msa0890300:CDS 45.0%
! GCAAGTTGAAGGACGAGAAA+TGG + chr6_1:63239954-63239973 Msa0890300:CDS 45.0%
AAGAGATGCAGCTTGATTGC+CGG + chr6_1:63239989-63240008 Msa0890300:CDS 45.0%
AGAACTCGAAGGTCGAGTTA+AGG + chr6_1:63240080-63240099 Msa0890300:CDS 45.0%
!! GAAGGAGCTCAAGTTGAAAG+AGG + chr6_1:63240224-63240243 Msa0890300:CDS 45.0%
GTGTGTTTCCCTGTTAACTC+AGG - chr6_1:63240318-63240337 None:intergenic 45.0%
! TCTTACACAGTGGAGTACCA+GGG - chr6_1:63241000-63241019 None:intergenic 45.0%
! TTCTTACACAGTGGAGTACC+AGG - chr6_1:63241001-63241020 None:intergenic 45.0%
TGGTACTCCACTGTGTAAGA+AGG + chr6_1:63241000-63241019 Msa0890300:CDS 45.0%
GGTACTCCACTGTGTAAGAA+GGG + chr6_1:63241001-63241020 Msa0890300:CDS 45.0%
!! GCATTAGCCCACTCTAAGAT+AGG + chr6_1:63241413-63241432 Msa0890300:intron 45.0%
CTTCATAGTTCCTGTCTAGG+GGG - chr6_1:63241683-63241702 None:intergenic 45.0%
GCTTCATAGTTCCTGTCTAG+GGG - chr6_1:63241684-63241703 None:intergenic 45.0%
GTCCCGATGTAAGAAACTTG+TGG - chr6_1:63241802-63241821 None:intergenic 45.0%
GAGGATTGTCTGTGCTTCAT+AGG + chr6_1:63241833-63241852 Msa0890300:intron 45.0%
TCGCTTTCACTGACAGTTCT+AGG + chr6_1:63241941-63241960 Msa0890300:intron 45.0%
! AAATGGGCGTTGTAGCAAAG+AGG - chr6_1:63242154-63242173 None:intergenic 45.0%
CACATGCAAGAACTGTTGGA+TGG - chr6_1:63242440-63242459 None:intergenic 45.0%
AGATCACGAAATCGCTAGTC+TGG + chr6_1:63242889-63242908 Msa0890300:CDS 45.0%
! GATCACGAAATCGCTAGTCT+GGG + chr6_1:63242890-63242909 Msa0890300:CDS 45.0%
AGACAACAGCCTAGAATCTG+AGG + chr6_1:63242934-63242953 Msa0890300:CDS 45.0%
ATTGAATTTCCCCACGAAGC+AGG - chr6_1:63242961-63242980 None:intergenic 45.0%
TTGCATGTAGGCACAGTTTG+AGG + chr6_1:63243264-63243283 Msa0890300:three_prime_UTR 45.0%
ACATGGACACGTCTAATCCG+TGG - chr6_1:63238651-63238670 None:intergenic 50.0%
! GTGTCGTGTCGTATCGGTAT+TGG - chr6_1:63238676-63238695 None:intergenic 50.0%
GTGTCTGTGTCGTGTCGTAT+CGG - chr6_1:63238682-63238701 None:intergenic 50.0%
CAGCGTATCAGTGTTGTGTC+CGG + chr6_1:63238749-63238768 Msa0890300:intron 50.0%
! GAGGGAACCTGTTTCTTGTG+AGG + chr6_1:63239009-63239028 Msa0890300:CDS 50.0%
GAATAAGTGCAAAGGACGGG+TGG + chr6_1:63239783-63239802 Msa0890300:CDS 50.0%
TCACGAGCGAAGCAGATGAA+AGG + chr6_1:63239859-63239878 Msa0890300:CDS 50.0%
TGCAGCTTGATTGCCGGAAA+AGG + chr6_1:63239995-63240014 Msa0890300:CDS 50.0%
GCAGCTTGATTGCCGGAAAA+GGG + chr6_1:63239996-63240015 Msa0890300:CDS 50.0%
GAAATTGGAAGGCCGAGTGA+AGG + chr6_1:63240038-63240057 Msa0890300:CDS 50.0%
! CGAATTTGGTGGACAACCGA+AGG + chr6_1:63240290-63240309 Msa0890300:CDS 50.0%
CCTGTTAACTCAGGCTCCTT+CGG - chr6_1:63240309-63240328 None:intergenic 50.0%
CGAAGGAGCCTGAGTTAACA+GGG + chr6_1:63240307-63240326 Msa0890300:CDS 50.0%
TGGTAGAACAAGTTTGCGGG+TGG + chr6_1:63240868-63240887 Msa0890300:CDS 50.0%
AGCTGTCTTGTGCTGAGCAA+CGG - chr6_1:63241266-63241285 None:intergenic 50.0%
TGCTCAGCACAAGACAGCTA+TGG + chr6_1:63241267-63241286 Msa0890300:CDS 50.0%
! TATGGAGCTGTTTGAGACCC+TGG + chr6_1:63241285-63241304 Msa0890300:CDS 50.0%
! ATGGAGCTGTTTGAGACCCT+GGG + chr6_1:63241286-63241305 Msa0890300:CDS 50.0%
TGTCAGTGACGTGTCAGTGT+CGG + chr6_1:63241774-63241793 Msa0890300:intron 50.0%
TCTGCGACTTCTTAACCGTG+TGG + chr6_1:63242071-63242090 Msa0890300:intron 50.0%
TCTAGCGAGCAGCGGAAAAT+GGG - chr6_1:63242170-63242189 None:intergenic 50.0%
GAAGCAGGTCCTCAGATTCT+AGG - chr6_1:63242946-63242965 None:intergenic 50.0%
AATCTGAGGACCTGCTTCGT+GGG + chr6_1:63242948-63242967 Msa0890300:CDS 50.0%
TCCGGTGTCCGTGCTTCATA+GGG + chr6_1:63238767-63238786 Msa0890300:intron 55.0%
TAAGTGCAAAGGACGGGTGG+AGG + chr6_1:63239786-63239805 Msa0890300:CDS 55.0%
CCGAAGGAGCCTGAGTTAAC+AGG + chr6_1:63240306-63240325 Msa0890300:CDS 55.0%
ACATCAAAGGCCCCCTAGAC+AGG + chr6_1:63241670-63241689 Msa0890300:intron 55.0%
ATCGGGACACGTCTAATCCG+AGG + chr6_1:63241814-63241833 Msa0890300:intron 55.0%
GCTGCAGAGCCAAGTGATGA+AGG + chr6_1:63242096-63242115 Msa0890300:intron 55.0%
CTCTAGCGAGCAGCGGAAAA+TGG - chr6_1:63242171-63242190 None:intergenic 55.0%
CTGTCATCTCTAGCGAGCAG+CGG - chr6_1:63242178-63242197 None:intergenic 55.0%
GAATCTGAGGACCTGCTTCG+TGG + chr6_1:63242947-63242966 Msa0890300:CDS 55.0%
ATCTGAGGACCTGCTTCGTG+GGG + chr6_1:63242949-63242968 Msa0890300:CDS 55.0%
GTCCGGTGTCCGTGCTTCAT+AGG + chr6_1:63238766-63238785 Msa0890300:intron 60.0%
GCCCTATGAAGCACGGACAC+CGG - chr6_1:63238771-63238790 None:intergenic 60.0%
!! TTGGCTCTGCAGCTGCCACA+CGG - chr6_1:63242089-63242108 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 63238330 63243311 63238330 ID=Msa0890300;Name=Msa0890300
chr6_1 mRNA 63238330 63243311 63238330 ID=Msa0890300-mRNA-1;Parent=Msa0890300;Name=Msa0890300-mRNA-1;_AED=0.28;_eAED=0.28;_QI=140|1|1|1|0.75|0.6|5|293|765
chr6_1 exon 63238330 63238439 63238330 ID=Msa0890300-mRNA-1:exon:11520;Parent=Msa0890300-mRNA-1
chr6_1 exon 63238863 63240378 63238863 ID=Msa0890300-mRNA-1:exon:11521;Parent=Msa0890300-mRNA-1
chr6_1 exon 63240831 63241328 63240831 ID=Msa0890300-mRNA-1:exon:11522;Parent=Msa0890300-mRNA-1
chr6_1 exon 63242600 63242772 63242600 ID=Msa0890300-mRNA-1:exon:11523;Parent=Msa0890300-mRNA-1
chr6_1 exon 63242878 63243311 63242878 ID=Msa0890300-mRNA-1:exon:11524;Parent=Msa0890300-mRNA-1
chr6_1 five_prime_UTR 63238330 63238439 63238330 ID=Msa0890300-mRNA-1:five_prime_utr;Parent=Msa0890300-mRNA-1
chr6_1 five_prime_UTR 63238863 63238892 63238863 ID=Msa0890300-mRNA-1:five_prime_utr;Parent=Msa0890300-mRNA-1
chr6_1 CDS 63238893 63240378 63238893 ID=Msa0890300-mRNA-1:cds;Parent=Msa0890300-mRNA-1
chr6_1 CDS 63240831 63241328 63240831 ID=Msa0890300-mRNA-1:cds;Parent=Msa0890300-mRNA-1
chr6_1 CDS 63242600 63242772 63242600 ID=Msa0890300-mRNA-1:cds;Parent=Msa0890300-mRNA-1
chr6_1 CDS 63242878 63243018 63242878 ID=Msa0890300-mRNA-1:cds;Parent=Msa0890300-mRNA-1
chr6_1 three_prime_UTR 63243019 63243311 63243019 ID=Msa0890300-mRNA-1:three_prime_utr;Parent=Msa0890300-mRNA-1
Gene Sequence

>Msa0890300

ATGATGGATTTTGAGGCTTCTGATAAGCGAAACTTCTGTGTTGGTGATGATGATGGGAACTTAAATGTTAAAGGGCTCAATTCATGTGAGGGTAAAACATCCCATTCAGATGTGTTGAGGGAACCTGTTTCTTGTGAGGACTTTGAATCTGCACATGATGTTGATGATGTTCCTGTGTCACCAAGATATTCTCCGAGTTCAAGTTTGGGAACATGTAGTAGTAAACCTGATGTTTCTGTTAAGAAGAGGGATATTAGTAATACTACACTGCCAGTTAAGAGGTTGTTTGATAACAGCAATTCCTTGAACATTTCTGTCAAGAAACCAAAGATGTCACCATATTATGATCACGGCGAAGACGAAAATGTTGATGATGAATCAGCTGATGAATCATTTTCCTTGCTGAAGAAAGAAGTTAATTTGGTAGAAAAATTGTTTAAGAATTGCAAAAGGAAGAGGACAGAAGAAGAGAAGAGATTGCAGTCTGTAAAGAGAGATATTGAAGAATGCTTGAAAGAGCTTCAAAATAAGAAGCAGCAAGTTATTTGTGTTAGAAGAGTTAATGAAATTATTTACAACAAAATGCTGGGAAAAGTTGAAAGCAAGGAAGAGGAACTTAAGGCCCTTACCCAAAAAGTTGAAAGCAAGAGAGAGGAATTTAAGGCTCTTACCCAAAAAGTTGCTGAATGTAATCTGGAACTTAAGTCCAAAGAGAAAGAGCTTGATGCAATGAAAATATTAATTAGTGGACAAGCAGAAATATTAGAGTCCGAAAGGAAGCAGTTACTAAAGGTAATATCAGTAATGCAGAATAATCGTGCTCAAATGAGGGATGTTGAGTCAAAGAAAAAGCGACTTGAAGATCATGTTAAGGAACTTGAGTCAAAAGAGAATAAGTGCAAAGGACGGGTGGAGGAACTTGAGTCGACGAAGAAGTACTTAGAAGGACAATTAAAGGCGTTAGAATCACGAGCGAAGCAGATGAAAGGACATGTGAAACAGTTTAAGTCAACGAAGAGGGAACTTGAAAATCATATAAAGGAGGTTGAATCAAAAAATAAGCAAGTTGAAGGACGAGAAATGGAACTAAAGTCAAAAGAGATGCAGCTTGATTGCCGGAAAAGGGAGTTAGAATCAAAAGAGGAGAAATTGGAAGGCCGAGTGAAGGAGCATGAATTGAAAGCAGAAGAACTCGAAGGTCGAGTTAAGGAAATCGAATCAAAAAATAAGCATTTGGAAAGCCAAGTTGAGTATTTCACATCAAACGATAAGCAATTTGAAGAACGGTGGAAAGAACTCGAGTCAAAAGAGAATCAGTTCAAAGTAAAGGAGAAGGAGCTCAAGTTGAAAGAGGAGCAGATTGAAGTACAAGTCAAGGAGCTTGAGTCAAAGCTGAACGAATTTGGTGGACAACCGAAGGAGCCTGAGTTAACAGGGAAACACACTGAAGCATTAAATAAACATATTGACGAGGAAAAAGAATTGGTTGCATCTCACATGGATGATCAATTAAGTCATACAATTGGTAGAACAAGTTTGCGGGTGGACAAAAGTGAGAAAACTGACGACGTTGAGTCACTTTGCAACGACATTTTTGTTTATCTGCAACAATCAGCAGATCCATCAAGACTTGTTTTGGATATAATACAGAACCCTGGTACTCCACTGTGTAAGAAGGGAGAAAATGCTGTGATTATTGATGATAGCCACATCTATCTGTTAGAGGAACTGATGAGAATATCACCAAGTATTAGACCTTGTGTAAGAGAAAAGGCATTGAAGCTAGCATGTGATTTGAAAGCTTACATGAGAGAGAATACTAAAAATTCTTCGGCTGTTCTTGTTTTTCTGCTGCTTTTGTCAGTTTATGGATTGCTTACTTCTTTTGATGAATGCGAAGTTTTGGAGCTCTTTGCATCCGTTGCTCAGCACAAGACAGCTATGGAGCTGTTTGAGACCCTGGGTTTTGCAAATAAAGTTTCTGATTTTGTTAAATATCTCATCAGGAGGAAGCAATTTGATGAAGCTGTTAGATTCAGCAGTGCATATAACTTGGCCGACAAGAATCAATTAATTGATATGTTGCGAGAACACGTCCAGAATGCGAAACAGATTTGTATGAGCCATTGTGAGAAAACAAACTCAATTGAAATCAAGGATAAGGCTAGAGATCACGAAATCGCTAGTCTGGGAACTGTTCTACAATGCATATCAGACAACAGCCTAGAATCTGAGGACCTGCTTCGTGGGGAAATTCAATGTCGTATTCATGAGCTAAACGAACATAAAGGCAAATAG
Protein sequence

>Msa0890300

MMDFEASDKRNFCVGDDDGNLNVKGLNSCEGKTSHSDVLREPVSCEDFESAHDVDDVPVSPRYSPSSSLGTCSSKPDVSVKKRDISNTTLPVKRLFDNSNSLNISVKKPKMSPYYDHGEDENVDDESADESFSLLKKEVNLVEKLFKNCKRKRTEEEKRLQSVKRDIEECLKELQNKKQQVICVRRVNEIIYNKMLGKVESKEEELKALTQKVESKREEFKALTQKVAECNLELKSKEKELDAMKILISGQAEILESERKQLLKVISVMQNNRAQMRDVESKKKRLEDHVKELESKENKCKGRVEELESTKKYLEGQLKALESRAKQMKGHVKQFKSTKRELENHIKEVESKNKQVEGREMELKSKEMQLDCRKRELESKEEKLEGRVKEHELKAEELEGRVKEIESKNKHLESQVEYFTSNDKQFEERWKELESKENQFKVKEKELKLKEEQIEVQVKELESKLNEFGGQPKEPELTGKHTEALNKHIDEEKELVASHMDDQLSHTIGRTSLRVDKSEKTDDVESLCNDIFVYLQQSADPSRLVLDIIQNPGTPLCKKGENAVIIDDSHIYLLEELMRISPSIRPCVREKALKLACDLKAYMRENTKNSSAVLVFLLLLSVYGLLTSFDECEVLELFASVAQHKTAMELFETLGFANKVSDFVKYLIRRKQFDEAVRFSSAYNLADKNQLIDMLREHVQNAKQICMSHCEKTNSIEIKDKARDHEIASLGTVLQCISDNSLESEDLLRGEIQCRIHELNEHKGK*